HEADER LIGASE 25-NOV-99 1DGT OBSLTE 30-MAR-04 1DGT 1V9P TITLE CRYSTAL STRUCTURE OF NAD+-DEPENDENT DNA LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 6.5.1.2; COMPND 5 OTHER_DETAILS: AMP IS BOUND TO LYS116 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS FILIFORMIS; SOURCE 3 ORGANISM_COMMON: BACTERIA KEYWDS AMP COMPLEX, NAD+-DEPENDENT EXPDTA X-RAY DIFFRACTION AUTHOR J.Y.LEE,C.CHANG,H.K.SONG,S.T.KWON,S.W.SUH REVDAT 2 30-MAR-04 1DGT 1 OBSLTE REVDAT 1 27-NOV-00 1DGT 0 JRNL AUTH J.Y.LEE,C.CHANG,H.K.SONG,J.MOON,J.K.YANG,H.K.KIM, JRNL AUTH 2 S.T.KWON,S.W.SUH JRNL TITL CRYSTAL STRUCTURE OF NAD(+)-DEPENDENT DNA LIGASE: JRNL TITL 2 MODULAR ARCHITECTURE AND FUNCTIONAL IMPLICATIONS. JRNL REF EMBO J. V. 19 1119 2000 JRNL REFN ASTM EMJODG UK ISSN 0261-4189 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.5 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 214789.790 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 36701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.323 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3723 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4709 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE : 0.4090 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 538 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9773 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 247 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 0.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.62000 REMARK 3 B22 (A**2) : 0.49000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 10.64000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.32 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.54 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.52 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.70 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.64 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 6.950 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 10.190; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 9.890 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 13.120; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.23 REMARK 3 BSOL : 10.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARH_LEE.PRO REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH_LEE.PRO REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DGT COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-1999. REMARK 100 THE RCSB ID CODE IS RCSB010076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-1999 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.009 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43634 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1DGS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICRO-SEEDING, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,1/2+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.81300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 582 REMARK 465 GLU A 583 REMARK 465 VAL A 584 REMARK 465 SER A 585 REMARK 465 ASP A 586 REMARK 465 LEU A 587 REMARK 465 LEU A 588 REMARK 465 SER A 589 REMARK 465 GLY A 590 REMARK 465 LEU A 591 REMARK 465 THR A 592 REMARK 465 PHE A 593 REMARK 465 VAL A 594 REMARK 465 LEU A 595 REMARK 465 THR A 596 REMARK 465 GLY A 597 REMARK 465 GLU A 598 REMARK 465 LEU A 599 REMARK 465 SER A 600 REMARK 465 ARG A 601 REMARK 465 PRO A 602 REMARK 465 ARG A 603 REMARK 465 GLU A 604 REMARK 465 GLU A 605 REMARK 465 VAL A 606 REMARK 465 LYS A 607 REMARK 465 ALA A 608 REMARK 465 LEU A 609 REMARK 465 LEU A 610 REMARK 465 GLY A 611 REMARK 465 ARG A 612 REMARK 465 LEU A 613 REMARK 465 GLY A 614 REMARK 465 ALA A 615 REMARK 465 LYS A 616 REMARK 465 VAL A 617 REMARK 465 THR A 618 REMARK 465 ASP A 619 REMARK 465 SER A 620 REMARK 465 VAL A 621 REMARK 465 SER A 622 REMARK 465 ARG A 623 REMARK 465 LYS A 624 REMARK 465 THR A 625 REMARK 465 SER A 626 REMARK 465 TYR A 627 REMARK 465 LEU A 628 REMARK 465 VAL A 629 REMARK 465 VAL A 630 REMARK 465 GLY A 631 REMARK 465 GLU A 632 REMARK 465 ASN A 633 REMARK 465 PRO A 634 REMARK 465 GLY A 635 REMARK 465 SER A 636 REMARK 465 LYS A 637 REMARK 465 LEU A 638 REMARK 465 GLU A 639 REMARK 465 LYS A 640 REMARK 465 ALA A 641 REMARK 465 ARG A 642 REMARK 465 ALA A 643 REMARK 465 LEU A 644 REMARK 465 GLY A 645 REMARK 465 VAL A 646 REMARK 465 ALA A 647 REMARK 465 VAL A 648 REMARK 465 LEU A 649 REMARK 465 THR A 650 REMARK 465 GLU A 651 REMARK 465 GLU A 652 REMARK 465 GLU A 653 REMARK 465 PHE A 654 REMARK 465 TRP A 655 REMARK 465 ARG A 656 REMARK 465 PHE A 657 REMARK 465 LEU A 658 REMARK 465 LYS A 659 REMARK 465 GLU A 660 REMARK 465 LYS A 661 REMARK 465 GLY A 662 REMARK 465 ALA A 663 REMARK 465 PRO A 664 REMARK 465 VAL A 665 REMARK 465 PRO A 666 REMARK 465 ALA A 667 REMARK 465 LYS B 2661 REMARK 465 GLY B 2662 REMARK 465 ALA B 2663 REMARK 465 PRO B 2664 REMARK 465 VAL B 2665 REMARK 465 PRO B 2666 REMARK 465 ALA B 2667 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B2582 CG CD OE1 OE2 REMARK 470 GLU B2583 CG CD OE1 OE2 REMARK 470 VAL B2584 CG1 CG2 REMARK 470 SER B2585 OG REMARK 470 ASP B2586 CG OD1 OD2 REMARK 470 LEU B2587 CG CD1 CD2 REMARK 470 LEU B2588 CG CD1 CD2 REMARK 470 SER B2589 OG REMARK 470 LEU B2591 CG CD1 CD2 REMARK 470 THR B2592 OG1 CG2 REMARK 470 PHE B2593 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL B2594 CG1 CG2 REMARK 470 LEU B2595 CG CD1 CD2 REMARK 470 THR B2596 OG1 CG2 REMARK 470 GLU B2598 CG CD OE1 OE2 REMARK 470 LEU B2599 CG CD1 CD2 REMARK 470 SER B2600 OG REMARK 470 ARG B2601 CG CD NE CZ NH1 NH2 REMARK 470 PRO B2602 CG CD REMARK 470 ARG B2603 CG CD NE CZ NH1 NH2 REMARK 470 GLU B2604 CG CD OE1 OE2 REMARK 470 GLU B2605 CG CD OE1 OE2 REMARK 470 VAL B2606 CG1 CG2 REMARK 470 LYS B2607 CG CD CE NZ REMARK 470 LEU B2609 CG CD1 CD2 REMARK 470 LEU B2610 CG CD1 CD2 REMARK 470 ARG B2612 CG CD NE CZ NH1 NH2 REMARK 470 LEU B2613 CG CD1 CD2 REMARK 470 LYS B2616 CG CD CE NZ REMARK 470 VAL B2617 CG1 CG2 REMARK 470 THR B2618 OG1 CG2 REMARK 470 ASP B2619 CG OD1 OD2 REMARK 470 SER B2620 OG REMARK 470 VAL B2621 CG1 CG2 REMARK 470 SER B2622 OG REMARK 470 ARG B2623 CG CD NE CZ NH1 NH2 REMARK 470 LYS B2624 CG CD CE NZ REMARK 470 THR B2625 OG1 CG2 REMARK 470 SER B2626 OG REMARK 470 TYR B2627 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B2628 CG CD1 CD2 REMARK 470 VAL B2629 CG1 CG2 REMARK 470 VAL B2630 CG1 CG2 REMARK 470 GLU B2632 CG CD OE1 OE2 REMARK 470 ASN B2633 CG OD1 ND2 REMARK 470 PRO B2634 CG CD REMARK 470 SER B2636 OG REMARK 470 LYS B2637 CG CD CE NZ REMARK 470 LEU B2638 CG CD1 CD2 REMARK 470 GLU B2639 CG CD OE1 OE2 REMARK 470 LYS B2640 CG CD CE NZ REMARK 470 ARG B2642 CB CG CD NE CZ NH1 NH2 REMARK 470 LEU B2644 CG CD1 CD2 REMARK 470 VAL B2646 CG1 CG2 REMARK 470 VAL B2648 CG1 CG2 REMARK 470 LEU B2649 CG CD1 CD2 REMARK 470 THR B2650 OG1 CG2 REMARK 470 GLU B2651 CG CD OE1 OE2 REMARK 470 GLU B2652 CG CD OE1 OE2 REMARK 470 GLU B2653 CG CD OE1 OE2 REMARK 470 PHE B2654 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP B2655 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B2655 CZ3 CH2 REMARK 470 ARG B2656 CG CD NE CZ NH1 NH2 REMARK 470 PHE B2657 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B2658 CG CD1 CD2 REMARK 470 LYS B2659 CG CD CE NZ REMARK 470 GLU B2660 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 489 CD GLN A 489 NE2 -0.078 REMARK 500 GLN B2489 CD GLN B2489 NE2 -0.076 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 109 N - CA - C ANGL. DEV. = 12.6 DEGREES REMARK 500 THR A 112 N - CA - C ANGL. DEV. =-12.9 DEGREES REMARK 500 LEU A 120 CA - CB - CG ANGL. DEV. = 12.9 DEGREES REMARK 500 LEU A 120 N - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 GLY A 133 N - CA - C ANGL. DEV. =-11.0 DEGREES REMARK 500 SER A 134 N - CA - C ANGL. DEV. = 10.9 DEGREES REMARK 500 GLU A 138 N - CA - C ANGL. DEV. =-10.3 DEGREES REMARK 500 VAL A 139 N - CA - C ANGL. DEV. =-12.7 DEGREES REMARK 500 VAL A 170 N - CA - C ANGL. DEV. =-11.9 DEGREES REMARK 500 LEU A 225 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 VAL A 251 N - CA - C ANGL. DEV. =-12.6 DEGREES REMARK 500 LEU A 322 CA - CB - CG ANGL. DEV. = 11.4 DEGREES REMARK 500 LEU B2016 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 ILE B2017 N - CA - C ANGL. DEV. =-11.6 DEGREES REMARK 500 GLY B2065 N - CA - C ANGL. DEV. = 10.6 DEGREES REMARK 500 LEU B2120 N - CA - C ANGL. DEV. = 11.7 DEGREES REMARK 500 GLU B2138 N - CA - C ANGL. DEV. =-10.7 DEGREES REMARK 500 LEU B2148 CA - CB - CG ANGL. DEV. = 10.6 DEGREES REMARK 500 ILE B2150 N - CA - C ANGL. DEV. =-10.9 DEGREES REMARK 500 LEU B2157 CA - CB - CG ANGL. DEV. = 10.8 DEGREES REMARK 500 VAL B2170 N - CA - C ANGL. DEV. =-14.6 DEGREES REMARK 500 ARG B2214 N - CA - C ANGL. DEV. =-10.8 DEGREES REMARK 500 VAL B2251 N - CA - C ANGL. DEV. =-12.2 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 357 -84.37 59.80 REMARK 500 HIS B2357 -81.90 47.95 REMARK 500 GLU B2583 -115.38 55.54 REMARK 500 LEU B2587 -70.81 62.67 REMARK 500 ARG B2601 -68.53 71.51 REMARK 500 VAL B2630 137.71 70.21 REMARK 525 REMARK 525 SOLVENT REMARK 525 THE FOLLOWING SOLVENT MOLECULES LIE FARTHER THAN EXPECTED REMARK 525 FROM THE PROTEIN OR NUCLEIC ACID MOLECULE AND MAY BE REMARK 525 ASSOCIATED WITH A SYMMETRY RELATED MOLECULE (M=MODEL REMARK 525 NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH 1152 DISTANCE = 5.42 ANGSTROMS REMARK 525 HOH 1155 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH 1159 DISTANCE = 5.63 ANGSTROMS REMARK 525 HOH 1185 DISTANCE = 5.27 ANGSTROMS REMARK 525 HOH 1190 DISTANCE = 5.69 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DGS RELATED DB: PDB REMARK 900 1DGS: SEMET DATA DBREF 1DGT A 1 667 GB AAC68862 AF061572 1 667 DBREF 1DGT B 2001 2667 GB AAC68862 AF061572 1 667 SEQRES 1 A 667 MET THR ARG GLU GLU ALA ARG ARG ARG ILE ASN GLU LEU SEQRES 2 A 667 ARG ASP LEU ILE ARG TYR HIS ASN TYR ARG TYR TYR VAL SEQRES 3 A 667 LEU ALA ASP PRO GLU ILE SER ASP ALA GLU TYR ASP ARG SEQRES 4 A 667 LEU LEU ARG GLU LEU LYS GLU LEU GLU GLU ARG PHE PRO SEQRES 5 A 667 GLU PHE LYS SER PRO ASP SER PRO THR GLU GLN VAL GLY SEQRES 6 A 667 ALA ARG PRO LEU GLU PRO THR PHE ARG PRO VAL ARG HIS SEQRES 7 A 667 PRO THR ARG MET TYR SER LEU ASP ASN ALA PHE THR TYR SEQRES 8 A 667 GLU GLU VAL LEU ALA PHE GLU GLU ARG LEU GLU ARG GLU SEQRES 9 A 667 ALA GLU ALA PRO SER LEU TYR THR VAL GLU HIS LYS VAL SEQRES 10 A 667 ASP GLY LEU SER VAL LEU TYR TYR GLU GLU GLY VAL TRP SEQRES 11 A 667 SER THR GLY SER GLY ASP GLY GLU VAL GLY GLU GLU VAL SEQRES 12 A 667 THR GLN ASN LEU LEU THR ILE PRO THR ILE PRO ARG ARG SEQRES 13 A 667 LEU LYS GLY VAL PRO ASP ARG LEU GLU VAL ARG GLY GLU SEQRES 14 A 667 VAL TYR MET PRO ILE GLU ALA PHE LEU ARG LEU ASN GLU SEQRES 15 A 667 GLU LEU GLU GLU ARG GLY GLU LYS VAL PHE LYS ASN PRO SEQRES 16 A 667 ARG ASN ALA ALA ALA GLY SER LEU ARG GLN LYS ASP PRO SEQRES 17 A 667 ARG VAL THR ALA LYS ARG GLY LEU ARG ALA THR PHE TYR SEQRES 18 A 667 ALA LEU GLY LEU GLY LEU GLY LEU GLU GLU SER GLY LEU SEQRES 19 A 667 LYS SER GLN TYR GLU LEU LEU LEU TRP LEU LYS GLU LYS SEQRES 20 A 667 GLY PHE PRO VAL GLU HIS CYS TYR GLU LYS ALA LEU GLY SEQRES 21 A 667 ALA GLU GLY VAL GLU GLU VAL TYR ARG ARG GLY LEU ALA SEQRES 22 A 667 GLN ARG HIS ALA LEU PRO PHE GLU ALA ASP GLY VAL VAL SEQRES 23 A 667 LEU LYS LEU ASP ASP LEU THR LEU TRP GLY GLU LEU GLY SEQRES 24 A 667 TYR THR ALA ARG ALA PRO ARG PHE ALA LEU ALA TYR LYS SEQRES 25 A 667 PHE PRO ALA GLU GLU LYS GLU THR ARG LEU LEU ASP VAL SEQRES 26 A 667 VAL PHE GLN VAL GLY ARG THR GLY ARG VAL THR PRO VAL SEQRES 27 A 667 GLY VAL LEU GLU PRO VAL PHE ILE GLU GLY SER GLU VAL SEQRES 28 A 667 SER ARG VAL THR LEU HIS ASN GLU SER TYR ILE GLU GLU SEQRES 29 A 667 LEU ASP ILE ARG ILE GLY ASP TRP VAL LEU VAL HIS LYS SEQRES 30 A 667 ALA GLY GLY VAL ILE PRO GLU VAL LEU ARG VAL LEU LYS SEQRES 31 A 667 GLU ARG ARG THR GLY LYS GLU ARG PRO ILE ARG TRP PRO SEQRES 32 A 667 GLU ALA CYS PRO GLU CYS GLY HIS ARG LEU VAL LYS GLU SEQRES 33 A 667 GLY LYS VAL HIS ARG CYS PRO ASN PRO LEU CYS PRO ALA SEQRES 34 A 667 LYS ARG PHE GLU ALA ILE ARG HIS TYR ALA SER ARG LYS SEQRES 35 A 667 ALA MET ASP ILE GLU GLY LEU GLY GLU LYS LEU ILE GLU SEQRES 36 A 667 ARG LEU LEU GLU LYS GLY LEU VAL ARG ASP VAL ALA ASP SEQRES 37 A 667 LEU TYR HIS LEU ARG LYS GLU ASP LEU LEU GLY LEU GLU SEQRES 38 A 667 ARG MET GLY GLU LYS SER ALA GLN ASN LEU LEU ARG GLN SEQRES 39 A 667 ILE GLU GLU SER LYS HIS ARG GLY LEU GLU ARG LEU LEU SEQRES 40 A 667 TYR ALA LEU GLY LEU PRO GLY VAL GLY GLU VAL LEU ALA SEQRES 41 A 667 ARG ASN LEU ALA ARG ARG PHE GLY THR MET ASP ARG LEU SEQRES 42 A 667 LEU GLU ALA SER LEU GLU GLU LEU ILE GLU VAL GLU GLU SEQRES 43 A 667 VAL GLY GLU LEU THR ALA ARG ALA ILE LEU GLU THR LEU SEQRES 44 A 667 LYS ASP PRO ALA PHE ARG ASP LEU VAL ARG ARG LEU LYS SEQRES 45 A 667 GLU ALA GLY VAL SER MET GLU SER LYS GLU GLU VAL SER SEQRES 46 A 667 ASP LEU LEU SER GLY LEU THR PHE VAL LEU THR GLY GLU SEQRES 47 A 667 LEU SER ARG PRO ARG GLU GLU VAL LYS ALA LEU LEU GLY SEQRES 48 A 667 ARG LEU GLY ALA LYS VAL THR ASP SER VAL SER ARG LYS SEQRES 49 A 667 THR SER TYR LEU VAL VAL GLY GLU ASN PRO GLY SER LYS SEQRES 50 A 667 LEU GLU LYS ALA ARG ALA LEU GLY VAL ALA VAL LEU THR SEQRES 51 A 667 GLU GLU GLU PHE TRP ARG PHE LEU LYS GLU LYS GLY ALA SEQRES 52 A 667 PRO VAL PRO ALA SEQRES 1 B 667 MET THR ARG GLU GLU ALA ARG ARG ARG ILE ASN GLU LEU SEQRES 2 B 667 ARG ASP LEU ILE ARG TYR HIS ASN TYR ARG TYR TYR VAL SEQRES 3 B 667 LEU ALA ASP PRO GLU ILE SER ASP ALA GLU TYR ASP ARG SEQRES 4 B 667 LEU LEU ARG GLU LEU LYS GLU LEU GLU GLU ARG PHE PRO SEQRES 5 B 667 GLU PHE LYS SER PRO ASP SER PRO THR GLU GLN VAL GLY SEQRES 6 B 667 ALA ARG PRO LEU GLU PRO THR PHE ARG PRO VAL ARG HIS SEQRES 7 B 667 PRO THR ARG MET TYR SER LEU ASP ASN ALA PHE THR TYR SEQRES 8 B 667 GLU GLU VAL LEU ALA PHE GLU GLU ARG LEU GLU ARG GLU SEQRES 9 B 667 ALA GLU ALA PRO SER LEU TYR THR VAL GLU HIS LYS VAL SEQRES 10 B 667 ASP GLY LEU SER VAL LEU TYR TYR GLU GLU GLY VAL TRP SEQRES 11 B 667 SER THR GLY SER GLY ASP GLY GLU VAL GLY GLU GLU VAL SEQRES 12 B 667 THR GLN ASN LEU LEU THR ILE PRO THR ILE PRO ARG ARG SEQRES 13 B 667 LEU LYS GLY VAL PRO ASP ARG LEU GLU VAL ARG GLY GLU SEQRES 14 B 667 VAL TYR MET PRO ILE GLU ALA PHE LEU ARG LEU ASN GLU SEQRES 15 B 667 GLU LEU GLU GLU ARG GLY GLU LYS VAL PHE LYS ASN PRO SEQRES 16 B 667 ARG ASN ALA ALA ALA GLY SER LEU ARG GLN LYS ASP PRO SEQRES 17 B 667 ARG VAL THR ALA LYS ARG GLY LEU ARG ALA THR PHE TYR SEQRES 18 B 667 ALA LEU GLY LEU GLY LEU GLY LEU GLU GLU SER GLY LEU SEQRES 19 B 667 LYS SER GLN TYR GLU LEU LEU LEU TRP LEU LYS GLU LYS SEQRES 20 B 667 GLY PHE PRO VAL GLU HIS CYS TYR GLU LYS ALA LEU GLY SEQRES 21 B 667 ALA GLU GLY VAL GLU GLU VAL TYR ARG ARG GLY LEU ALA SEQRES 22 B 667 GLN ARG HIS ALA LEU PRO PHE GLU ALA ASP GLY VAL VAL SEQRES 23 B 667 LEU LYS LEU ASP ASP LEU THR LEU TRP GLY GLU LEU GLY SEQRES 24 B 667 TYR THR ALA ARG ALA PRO ARG PHE ALA LEU ALA TYR LYS SEQRES 25 B 667 PHE PRO ALA GLU GLU LYS GLU THR ARG LEU LEU ASP VAL SEQRES 26 B 667 VAL PHE GLN VAL GLY ARG THR GLY ARG VAL THR PRO VAL SEQRES 27 B 667 GLY VAL LEU GLU PRO VAL PHE ILE GLU GLY SER GLU VAL SEQRES 28 B 667 SER ARG VAL THR LEU HIS ASN GLU SER TYR ILE GLU GLU SEQRES 29 B 667 LEU ASP ILE ARG ILE GLY ASP TRP VAL LEU VAL HIS LYS SEQRES 30 B 667 ALA GLY GLY VAL ILE PRO GLU VAL LEU ARG VAL LEU LYS SEQRES 31 B 667 GLU ARG ARG THR GLY LYS GLU ARG PRO ILE ARG TRP PRO SEQRES 32 B 667 GLU ALA CYS PRO GLU CYS GLY HIS ARG LEU VAL LYS GLU SEQRES 33 B 667 GLY LYS VAL HIS ARG CYS PRO ASN PRO LEU CYS PRO ALA SEQRES 34 B 667 LYS ARG PHE GLU ALA ILE ARG HIS TYR ALA SER ARG LYS SEQRES 35 B 667 ALA MET ASP ILE GLU GLY LEU GLY GLU LYS LEU ILE GLU SEQRES 36 B 667 ARG LEU LEU GLU LYS GLY LEU VAL ARG ASP VAL ALA ASP SEQRES 37 B 667 LEU TYR HIS LEU ARG LYS GLU ASP LEU LEU GLY LEU GLU SEQRES 38 B 667 ARG MET GLY GLU LYS SER ALA GLN ASN LEU LEU ARG GLN SEQRES 39 B 667 ILE GLU GLU SER LYS HIS ARG GLY LEU GLU ARG LEU LEU SEQRES 40 B 667 TYR ALA LEU GLY LEU PRO GLY VAL GLY GLU VAL LEU ALA SEQRES 41 B 667 ARG ASN LEU ALA ARG ARG PHE GLY THR MET ASP ARG LEU SEQRES 42 B 667 LEU GLU ALA SER LEU GLU GLU LEU ILE GLU VAL GLU GLU SEQRES 43 B 667 VAL GLY GLU LEU THR ALA ARG ALA ILE LEU GLU THR LEU SEQRES 44 B 667 LYS ASP PRO ALA PHE ARG ASP LEU VAL ARG ARG LEU LYS SEQRES 45 B 667 GLU ALA GLY VAL SER MET GLU SER LYS GLU GLU VAL SER SEQRES 46 B 667 ASP LEU LEU SER GLY LEU THR PHE VAL LEU THR GLY GLU SEQRES 47 B 667 LEU SER ARG PRO ARG GLU GLU VAL LYS ALA LEU LEU GLY SEQRES 48 B 667 ARG LEU GLY ALA LYS VAL THR ASP SER VAL SER ARG LYS SEQRES 49 B 667 THR SER TYR LEU VAL VAL GLY GLU ASN PRO GLY SER LYS SEQRES 50 B 667 LEU GLU LYS ALA ARG ALA LEU GLY VAL ALA VAL LEU THR SEQRES 51 B 667 GLU GLU GLU PHE TRP ARG PHE LEU LYS GLU LYS GLY ALA SEQRES 52 B 667 PRO VAL PRO ALA HET ZN 701 1 HET ZN 2701 1 HET AMP A 700 22 HET AMP B2700 22 HETNAM ZN ZINC ION HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 3 ZN 2(ZN 2+) FORMUL 5 AMP 2(C10 H14 N5 O7 P) FORMUL 7 HOH *247(H2 O1) HELIX 1 1 THR A 2 VAL A 26 1 25 HELIX 2 2 SER A 33 PHE A 51 1 19 HELIX 3 3 PRO A 52 LYS A 55 5 4 HELIX 4 4 SER A 59 GLN A 63 5 5 HELIX 5 5 THR A 90 LEU A 101 1 12 HELIX 6 6 PRO A 173 ARG A 187 1 15 HELIX 7 7 ASN A 194 ARG A 204 1 11 HELIX 8 8 ASP A 207 ARG A 214 1 8 HELIX 9 9 SER A 236 LYS A 247 1 12 HELIX 10 10 GLY A 260 GLN A 274 1 15 HELIX 11 11 LEU A 292 TRP A 295 5 4 HELIX 12 12 ASN A 358 ASP A 366 1 9 HELIX 13 13 CYS A 427 ALA A 429 5 3 HELIX 14 14 LYS A 430 SER A 440 1 11 HELIX 15 15 GLY A 450 LYS A 460 1 11 HELIX 16 16 ASP A 465 TYR A 470 5 6 HELIX 17 17 LYS A 474 LEU A 478 5 5 HELIX 18 18 SER A 487 SER A 498 1 12 HELIX 19 19 LYS A 499 ARG A 501 5 3 HELIX 20 20 GLY A 502 LEU A 510 1 9 HELIX 21 21 GLY A 516 GLY A 528 1 13 HELIX 22 22 THR A 529 LEU A 534 1 6 HELIX 23 23 SER A 537 GLU A 543 1 7 HELIX 24 24 GLU A 549 LYS A 560 1 12 HELIX 25 25 ASP A 561 GLU A 573 1 13 HELIX 26 26 THR B 2002 GLU B 2004 5 3 HELIX 27 27 GLU B 2005 VAL B 2026 1 22 HELIX 28 28 ALA B 2035 PHE B 2051 1 17 HELIX 29 29 PRO B 2052 LYS B 2055 5 4 HELIX 30 30 SER B 2059 GLN B 2063 5 5 HELIX 31 31 THR B 2090 ARG B 2100 1 11 HELIX 32 32 VAL B 2143 LEU B 2148 1 6 HELIX 33 33 PRO B 2173 GLU B 2186 1 14 HELIX 34 34 ASN B 2194 ARG B 2204 1 11 HELIX 35 35 PRO B 2208 LYS B 2213 1 6 HELIX 36 36 SER B 2236 GLY B 2248 1 13 HELIX 37 37 GLY B 2260 GLN B 2274 1 15 HELIX 38 38 ARG B 2275 LEU B 2278 5 4 HELIX 39 39 LEU B 2292 TRP B 2295 5 4 HELIX 40 40 LYS B 2430 ALA B 2439 1 10 HELIX 41 41 GLY B 2450 GLU B 2459 1 10 HELIX 42 42 LYS B 2474 GLY B 2479 1 6 HELIX 43 43 GLU B 2485 GLU B 2497 1 13 HELIX 44 44 SER B 2498 ARG B 2501 5 4 HELIX 45 45 GLY B 2502 GLY B 2511 1 10 HELIX 46 46 VAL B 2518 GLY B 2528 1 11 HELIX 47 47 THR B 2529 GLU B 2535 1 7 HELIX 48 48 SER B 2537 ILE B 2542 1 6 HELIX 49 49 GLY B 2548 ASP B 2561 1 14 HELIX 50 50 ASP B 2561 GLU B 2573 1 13 HELIX 51 51 GLU B 2604 LEU B 2609 1 6 SHEET 1 A 2 PRO A 75 ARG A 77 0 SHEET 2 A 2 VAL A 139 GLU A 141 -1 O GLY A 140 N VAL A 76 SHEET 1 B 5 ASN A 87 ALA A 88 0 SHEET 2 B 5 ALA A 308 LYS A 312 1 O ALA A 310 N ALA A 88 SHEET 3 B 5 GLY A 284 LEU A 289 -1 N VAL A 285 O TYR A 311 SHEET 4 B 5 LEU A 110 HIS A 115 -1 O THR A 112 N LYS A 288 SHEET 5 B 5 TYR A 255 LEU A 259 -1 O GLU A 256 N VAL A 113 SHEET 1 C 4 VAL A 129 GLY A 133 0 SHEET 2 C 4 LEU A 120 GLU A 126 -1 O TYR A 124 N SER A 131 SHEET 3 C 4 ARG A 163 TYR A 171 -1 N LEU A 164 O TYR A 125 SHEET 4 C 4 ARG A 217 LEU A 223 -1 N ARG A 217 O TYR A 171 SHEET 1 D 5 GLU A 350 THR A 355 0 SHEET 2 D 5 VAL A 335 PHE A 345 -1 N GLY A 339 O VAL A 354 SHEET 3 D 5 LYS A 318 VAL A 329 -1 O ARG A 321 N GLU A 342 SHEET 4 D 5 TRP A 372 LYS A 377 -1 N VAL A 373 O THR A 320 SHEET 5 D 5 PRO A 383 LEU A 389 -1 N GLU A 384 O HIS A 376 SHEET 1 E 2 VAL A 414 GLU A 416 0 SHEET 2 E 2 VAL A 419 ARG A 421 -1 O VAL A 419 N GLU A 416 SHEET 1 F 2 PRO B2075 ARG B2077 0 SHEET 2 F 2 VAL B2139 GLU B2141 -1 N GLY B2140 O VAL B2076 SHEET 1 G 5 ASN B2087 ALA B2088 0 SHEET 2 G 5 ALA B2308 LYS B2312 1 O ALA B2310 N ALA B2088 SHEET 3 G 5 GLY B2284 LEU B2289 -1 O VAL B2285 N TYR B2311 SHEET 4 G 5 LEU B2110 LYS B2116 -1 N THR B2112 O LYS B2288 SHEET 5 G 5 TYR B2255 LEU B2259 -1 O GLU B2256 N VAL B2113 SHEET 1 H 4 VAL B2129 GLY B2133 0 SHEET 2 H 4 LEU B2120 GLU B2126 -1 N TYR B2124 O THR B2132 SHEET 3 H 4 ARG B2163 TYR B2171 -1 O LEU B2164 N TYR B2125 SHEET 4 H 4 ARG B2217 LEU B2223 -1 O ARG B2217 N TYR B2171 SHEET 1 I 3 GLU B2317 ARG B2321 0 SHEET 2 I 3 TRP B2372 HIS B2376 -1 N VAL B2373 O THR B2320 SHEET 3 I 3 GLU B2384 VAL B2388 -1 N GLU B2384 O HIS B2376 SHEET 1 J 3 ASP B2324 VAL B2329 0 SHEET 2 J 3 VAL B2335 PHE B2345 -1 N THR B2336 O GLN B2328 SHEET 3 J 3 GLU B2350 THR B2355 -1 O VAL B2351 N VAL B2344 LINK NZ LYS A 116 P AMP A 700 LINK NZ LYS B2116 P AMP B2700 CRYST1 89.508 115.626 97.165 90.00 115.73 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011172 0.000000 0.005384 0.00000 SCALE2 0.000000 0.008649 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011425 0.00000