data_1DH3 # _entry.id 1DH3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DH3 pdb_00001dh3 10.2210/pdb1dh3/pdb NDB PD0102 ? ? RCSB RCSB010086 ? ? WWPDB D_1000010086 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DH3 _pdbx_database_status.recvd_initial_deposition_date 1999-11-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schumacher, M.A.' 1 'Goodman, R.H.' 2 'Brennan, R.G.' 3 # _citation.id primary _citation.title ;The structure of a CREB bZIP.somatostatin CRE complex reveals the basis for selective dimerization and divalent cation-enhanced DNA binding ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 275 _citation.page_first 35242 _citation.page_last 35247 _citation.year 2000 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10952992 _citation.pdbx_database_id_DOI 10.1074/jbc.M007293200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schumacher, M.A.' 1 ? primary 'Goodman, R.H.' 2 ? primary 'Brennan, R.G.' 3 ? # _cell.entry_id 1DH3 _cell.length_a 110.610 _cell.length_b 49.320 _cell.length_c 79.250 _cell.angle_alpha 90.00 _cell.angle_beta 122.18 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DH3 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*TP*TP*GP*GP*CP*TP*GP*AP*CP*GP*TP*CP*AP*GP*CP*CP*AP*AP*G)-3') ; 6424.148 2 ? ? ? ? 2 polymer man 'TRANSCRIPTION FACTOR CREB' 6686.831 2 ? ? 'RESIDUES 201-255' ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 17 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DC)(DC)(DT)(DT)(DG)(DG)(DC)(DT)(DG)(DA)(DC)(DG)(DT)(DC)(DA)(DG)(DC)(DC)(DA)(DA) (DG) ; CCTTGGCTGACGTCAGCCAAG B,D ? 2 'polypeptide(L)' no no KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSHK KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSHK A,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DT n 1 4 DT n 1 5 DG n 1 6 DG n 1 7 DC n 1 8 DT n 1 9 DG n 1 10 DA n 1 11 DC n 1 12 DG n 1 13 DT n 1 14 DC n 1 15 DA n 1 16 DG n 1 17 DC n 1 18 DC n 1 19 DA n 1 20 DA n 1 21 DG n 2 1 LYS n 2 2 ARG n 2 3 GLU n 2 4 VAL n 2 5 ARG n 2 6 LEU n 2 7 MET n 2 8 LYS n 2 9 ASN n 2 10 ARG n 2 11 GLU n 2 12 ALA n 2 13 ALA n 2 14 ARG n 2 15 GLU n 2 16 SER n 2 17 ARG n 2 18 ARG n 2 19 LYS n 2 20 LYS n 2 21 LYS n 2 22 GLU n 2 23 TYR n 2 24 VAL n 2 25 LYS n 2 26 SER n 2 27 LEU n 2 28 GLU n 2 29 ASN n 2 30 ARG n 2 31 VAL n 2 32 ALA n 2 33 VAL n 2 34 LEU n 2 35 GLU n 2 36 ASN n 2 37 GLN n 2 38 ASN n 2 39 LYS n 2 40 THR n 2 41 LEU n 2 42 ILE n 2 43 GLU n 2 44 GLU n 2 45 LEU n 2 46 LYS n 2 47 ALA n 2 48 LEU n 2 49 LYS n 2 50 ASP n 2 51 LEU n 2 52 TYR n 2 53 SER n 2 54 HIS n 2 55 LYS n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET15B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP CREB1_MOUSE 2 Q01147 ? ? ? 2 PDB 1DH3 1 1DH3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DH3 A 1 ? 55 ? Q01147 201 ? 255 ? 285 339 2 1 1DH3 C 1 ? 55 ? Q01147 201 ? 255 ? 285 339 3 2 1DH3 B 1 ? 21 ? 1DH3 -11 ? 10 ? -11 10 4 2 1DH3 D 1 ? 21 ? 1DH3 -11 ? 10 ? -11 10 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1DH3 SER A 16 ? UNP Q01147 CYS 216 'engineered mutation' 300 1 1 1DH3 SER A 26 ? UNP Q01147 CYS 226 'engineered mutation' 310 2 1 1DH3 SER A 16 ? UNP Q01147 CYS 253 'engineered mutation' 300 3 2 1DH3 SER C 16 ? UNP Q01147 CYS 216 'engineered mutation' 300 4 2 1DH3 SER C 26 ? UNP Q01147 CYS 226 'engineered mutation' 310 5 2 1DH3 SER C 16 ? UNP Q01147 CYS 253 'engineered mutation' 300 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1DH3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.42 _exptl_crystal.density_percent_sol 64.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298. _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details 'PEG 8000, MGCL2, (NH4)2SO4, MES, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298.K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MGCL2 ? ? ? 1 2 1 '(NH4)2SO4' ? ? ? 1 3 1 MES ? ? ? 1 4 1 'PEG 8000' ? ? ? 1 5 2 'PEG 8000' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 298. _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0800 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 _diffrn_source.pdbx_wavelength 1.0800 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DH3 _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 10. _reflns.d_resolution_high 3.0 _reflns.number_obs 7316 _reflns.number_all 7436 _reflns.percent_possible_obs 90. _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17. _reflns.B_iso_Wilson_estimate 40. _reflns.pdbx_redundancy 5.7 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.0 _reflns_shell.d_res_low 3.2 _reflns_shell.percent_possible_all 95 _reflns_shell.Rmerge_I_obs 0.258 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 5.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1DH3 _refine.ls_number_reflns_obs 7316 _refine.ls_number_reflns_all 7436 _refine.pdbx_ls_sigma_I 1 _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10. _refine.ls_d_res_high 3.0 _refine.ls_percent_reflns_obs 98 _refine.ls_R_factor_obs 0.218 _refine.ls_R_factor_all 0.218 _refine.ls_R_factor_R_work 0.223 _refine.ls_R_factor_R_free 0.28 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10 _refine.ls_number_reflns_R_free 694 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;THE FIRST AND LAST TWO RESIDUES ARE DISORDERED AND NOT MODELED. THE DENSITY IS WEAK FOR RESIDUES 334-339 IN BOTH PROTEIN CHAINS. PROCHECK REVEALED NO BAD CONTACTS AND NO RAMACHANDRAN OUTLIERS ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 934 _refine_hist.pdbx_number_atoms_nucleic_acid 852 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 11 _refine_hist.number_atoms_total 1804 _refine_hist.d_res_high 3.0 _refine_hist.d_res_low 10. # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ? t_angle_deg 1.906 ? ? ? 'X-RAY DIFFRACTION' ? t_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? ? ? 'X-RAY DIFFRACTION' ? t_gen_planes ? ? ? ? 'X-RAY DIFFRACTION' ? t_it ? ? ? ? 'X-RAY DIFFRACTION' ? t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1DH3 _struct.title 'CRYSTAL STRUCTURE OF A CREB BZIP-CRE COMPLEX REVEALS THE BASIS FOR CREB FAIMLY SELECTIVE DIMERIZATION AND DNA BINDING' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DH3 _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS C 1 ? ASP C 50 ? LYS A 285 ASP A 334 1 ? 50 HELX_P HELX_P2 2 LYS D 1 ? LEU D 51 ? LYS C 285 LEU C 335 1 ? 51 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? F HOH . O ? ? ? 1_555 E MG . MG ? ? B HOH 411 C MG 100 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc2 metalc ? ? H HOH . O ? ? ? 1_555 E MG . MG ? ? A HOH 413 C MG 100 1_555 ? ? ? ? ? ? ? 2.085 ? ? metalc3 metalc ? ? H HOH . O ? ? ? 1_555 E MG . MG ? ? A HOH 415 C MG 100 1_555 ? ? ? ? ? ? ? 2.051 ? ? metalc4 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? C MG 100 C HOH 412 1_555 ? ? ? ? ? ? ? 2.147 ? ? metalc5 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? C MG 100 C HOH 414 1_555 ? ? ? ? ? ? ? 2.109 ? ? metalc6 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? C MG 100 C HOH 416 1_555 ? ? ? ? ? ? ? 2.102 ? ? hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 21 N1 ? ? B DC -10 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 21 O6 ? ? B DC -10 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 21 N2 ? ? B DC -10 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 19 N6 ? ? B DT -9 D DA 8 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog5 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 20 N1 ? ? B DT -9 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 20 N6 ? ? B DT -9 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 19 N1 ? ? B DT -8 D DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 19 N6 ? ? B DT -8 D DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 18 N3 ? ? B DG -7 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 18 O2 ? ? B DG -7 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 18 N4 ? ? B DG -7 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 17 N3 ? ? B DG -6 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 17 O2 ? ? B DG -6 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 17 N4 ? ? B DG -6 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 16 N1 ? ? B DC -5 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 16 O6 ? ? B DC -5 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 16 N2 ? ? B DC -5 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 15 N1 ? ? B DT -4 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 15 N6 ? ? B DT -4 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 14 N3 ? ? B DG -3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 14 O2 ? ? B DG -3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 14 N4 ? ? B DG -3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 13 N3 ? ? B DA -2 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 13 O4 ? ? B DA -2 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 12 N1 ? ? B DC -1 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 12 O6 ? ? B DC -1 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 12 N2 ? ? B DC -1 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 11 N3 ? ? B DG 1 D DC -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 11 O2 ? ? B DG 1 D DC -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 11 N4 ? ? B DG 1 D DC -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DA 10 N1 ? ? B DT 2 D DA -2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DA 10 N6 ? ? B DT 2 D DA -2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 14 N4 ? ? ? 1_555 B DT 8 O4 ? ? B DC 3 D DT -4 1_555 ? ? ? ? ? ? 'DC-DT MISPAIR' ? ? ? hydrog34 hydrog ? ? A DC 14 N3 ? ? ? 1_555 B DG 9 N1 ? ? B DC 3 D DG -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 14 N4 ? ? ? 1_555 B DG 9 O6 ? ? B DC 3 D DG -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 14 O2 ? ? ? 1_555 B DG 9 N2 ? ? B DC 3 D DG -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DA 15 N1 ? ? ? 1_555 B DT 8 N3 ? ? B DA 4 D DT -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DA 15 N6 ? ? ? 1_555 B DT 8 O4 ? ? B DA 4 D DT -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 16 N1 ? ? ? 1_555 B DC 7 N3 ? ? B DG 5 D DC -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 16 N2 ? ? ? 1_555 B DC 7 O2 ? ? B DG 5 D DC -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 16 O6 ? ? ? 1_555 B DC 7 N4 ? ? B DG 5 D DC -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 17 N3 ? ? ? 1_555 B DG 6 N1 ? ? B DC 6 D DG -6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DC 17 N4 ? ? ? 1_555 B DG 6 O6 ? ? B DC 6 D DG -6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DC 17 O2 ? ? ? 1_555 B DG 6 N2 ? ? B DC 6 D DG -6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DC 18 N3 ? ? ? 1_555 B DG 5 N2 ? ? B DC 7 D DG -7 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog46 hydrog ? ? A DA 19 N1 ? ? ? 1_555 B DT 4 N3 ? ? B DA 8 D DT -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DA 19 N6 ? ? ? 1_555 B DT 4 O4 ? ? B DA 8 D DT -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DA 20 N1 ? ? ? 1_555 B DT 3 N3 ? ? B DA 9 D DT -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DA 20 N6 ? ? ? 1_555 B DT 3 O4 ? ? B DA 9 D DT -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DG 21 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 10 D DC -10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A DG 21 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 10 D DC -10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A DG 21 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 10 D DC -10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id C _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 100 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE MG C 100' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH H . ? HOH A 413 . ? 1_555 ? 2 AC1 7 HOH H . ? HOH A 415 . ? 1_555 ? 3 AC1 7 HOH F . ? HOH B 411 . ? 1_555 ? 4 AC1 7 LYS D 20 ? LYS C 304 . ? 1_555 ? 5 AC1 7 HOH I . ? HOH C 412 . ? 1_555 ? 6 AC1 7 HOH I . ? HOH C 414 . ? 1_555 ? 7 AC1 7 HOH I . ? HOH C 416 . ? 1_555 ? # _database_PDB_matrix.entry_id 1DH3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1DH3 _atom_sites.fract_transf_matrix[1][1] 0.009041 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005689 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020276 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014909 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 -11 -11 DC C B . n A 1 2 DC 2 -10 -10 DC C B . n A 1 3 DT 3 -9 -9 DT T B . n A 1 4 DT 4 -8 -8 DT T B . n A 1 5 DG 5 -7 -7 DG G B . n A 1 6 DG 6 -6 -6 DG G B . n A 1 7 DC 7 -5 -5 DC C B . n A 1 8 DT 8 -4 -4 DT T B . n A 1 9 DG 9 -3 -3 DG G B . n A 1 10 DA 10 -2 -2 DA A B . n A 1 11 DC 11 -1 -1 DC C B . n A 1 12 DG 12 1 1 DG G B . n A 1 13 DT 13 2 2 DT T B . n A 1 14 DC 14 3 3 DC C B . n A 1 15 DA 15 4 4 DA A B . n A 1 16 DG 16 5 5 DG G B . n A 1 17 DC 17 6 6 DC C B . n A 1 18 DC 18 7 7 DC C B . n A 1 19 DA 19 8 8 DA A B . n A 1 20 DA 20 9 9 DA A B . n A 1 21 DG 21 10 10 DG G B . n B 1 1 DC 1 -11 -11 DC C D . n B 1 2 DC 2 -10 -10 DC C D . n B 1 3 DT 3 -9 -9 DT T D . n B 1 4 DT 4 -8 -8 DT T D . n B 1 5 DG 5 -7 -7 DG G D . n B 1 6 DG 6 -6 -6 DG G D . n B 1 7 DC 7 -5 -5 DC C D . n B 1 8 DT 8 -4 -4 DT T D . n B 1 9 DG 9 -3 -3 DG G D . n B 1 10 DA 10 -2 -2 DA A D . n B 1 11 DC 11 -1 -1 DC C D . n B 1 12 DG 12 1 1 DG G D . n B 1 13 DT 13 2 2 DT T D . n B 1 14 DC 14 3 3 DC C D . n B 1 15 DA 15 4 4 DA A D . n B 1 16 DG 16 5 5 DG G D . n B 1 17 DC 17 6 6 DC C D . n B 1 18 DC 18 7 7 DC C D . n B 1 19 DA 19 8 8 DA A D . n B 1 20 DA 20 9 9 DA A D . n B 1 21 DG 21 10 10 DG G D . n C 2 1 LYS 1 285 285 LYS LYS A . n C 2 2 ARG 2 286 286 ARG ARG A . n C 2 3 GLU 3 287 287 GLU GLU A . n C 2 4 VAL 4 288 288 VAL VAL A . n C 2 5 ARG 5 289 289 ARG ARG A . n C 2 6 LEU 6 290 290 LEU LEU A . n C 2 7 MET 7 291 291 MET MET A . n C 2 8 LYS 8 292 292 LYS LYS A . n C 2 9 ASN 9 293 293 ASN ASN A . n C 2 10 ARG 10 294 294 ARG ARG A . n C 2 11 GLU 11 295 295 GLU GLU A . n C 2 12 ALA 12 296 296 ALA ALA A . n C 2 13 ALA 13 297 297 ALA ALA A . n C 2 14 ARG 14 298 298 ARG ARG A . n C 2 15 GLU 15 299 299 GLU GLU A . n C 2 16 SER 16 300 300 SER SER A . n C 2 17 ARG 17 301 301 ARG ARG A . n C 2 18 ARG 18 302 302 ARG ARG A . n C 2 19 LYS 19 303 303 LYS LYS A . n C 2 20 LYS 20 304 304 LYS LYS A . n C 2 21 LYS 21 305 305 LYS LYS A . n C 2 22 GLU 22 306 306 GLU GLU A . n C 2 23 TYR 23 307 307 TYR TYR A . n C 2 24 VAL 24 308 308 VAL VAL A . n C 2 25 LYS 25 309 309 LYS LYS A . n C 2 26 SER 26 310 310 SER SER A . n C 2 27 LEU 27 311 311 LEU LEU A . n C 2 28 GLU 28 312 312 GLU GLU A . n C 2 29 ASN 29 313 313 ASN ASN A . n C 2 30 ARG 30 314 314 ARG ARG A . n C 2 31 VAL 31 315 315 VAL VAL A . n C 2 32 ALA 32 316 316 ALA ALA A . n C 2 33 VAL 33 317 317 VAL VAL A . n C 2 34 LEU 34 318 318 LEU LEU A . n C 2 35 GLU 35 319 319 GLU GLU A . n C 2 36 ASN 36 320 320 ASN ASN A . n C 2 37 GLN 37 321 321 GLN GLN A . n C 2 38 ASN 38 322 322 ASN ASN A . n C 2 39 LYS 39 323 323 LYS LYS A . n C 2 40 THR 40 324 324 THR THR A . n C 2 41 LEU 41 325 325 LEU LEU A . n C 2 42 ILE 42 326 326 ILE ILE A . n C 2 43 GLU 43 327 327 GLU GLU A . n C 2 44 GLU 44 328 328 GLU GLU A . n C 2 45 LEU 45 329 329 LEU LEU A . n C 2 46 LYS 46 330 330 LYS LYS A . n C 2 47 ALA 47 331 331 ALA ALA A . n C 2 48 LEU 48 332 332 LEU LEU A . n C 2 49 LYS 49 333 333 LYS LYS A . n C 2 50 ASP 50 334 334 ASP ASP A . n C 2 51 LEU 51 335 335 LEU LEU A . n C 2 52 TYR 52 336 336 TYR TYR A . n C 2 53 SER 53 337 337 SER SER A . n C 2 54 HIS 54 338 338 HIS HIS A . n C 2 55 LYS 55 339 339 LYS LYS A . n D 2 1 LYS 1 285 285 LYS LYS C . n D 2 2 ARG 2 286 286 ARG ARG C . n D 2 3 GLU 3 287 287 GLU GLU C . n D 2 4 VAL 4 288 288 VAL VAL C . n D 2 5 ARG 5 289 289 ARG ARG C . n D 2 6 LEU 6 290 290 LEU LEU C . n D 2 7 MET 7 291 291 MET MET C . n D 2 8 LYS 8 292 292 LYS LYS C . n D 2 9 ASN 9 293 293 ASN ASN C . n D 2 10 ARG 10 294 294 ARG ARG C . n D 2 11 GLU 11 295 295 GLU GLU C . n D 2 12 ALA 12 296 296 ALA ALA C . n D 2 13 ALA 13 297 297 ALA ALA C . n D 2 14 ARG 14 298 298 ARG ARG C . n D 2 15 GLU 15 299 299 GLU GLU C . n D 2 16 SER 16 300 300 SER SER C . n D 2 17 ARG 17 301 301 ARG ARG C . n D 2 18 ARG 18 302 302 ARG ARG C . n D 2 19 LYS 19 303 303 LYS LYS C . n D 2 20 LYS 20 304 304 LYS LYS C . n D 2 21 LYS 21 305 305 LYS LYS C . n D 2 22 GLU 22 306 306 GLU GLU C . n D 2 23 TYR 23 307 307 TYR TYR C . n D 2 24 VAL 24 308 308 VAL VAL C . n D 2 25 LYS 25 309 309 LYS LYS C . n D 2 26 SER 26 310 310 SER SER C . n D 2 27 LEU 27 311 311 LEU LEU C . n D 2 28 GLU 28 312 312 GLU GLU C . n D 2 29 ASN 29 313 313 ASN ASN C . n D 2 30 ARG 30 314 314 ARG ARG C . n D 2 31 VAL 31 315 315 VAL VAL C . n D 2 32 ALA 32 316 316 ALA ALA C . n D 2 33 VAL 33 317 317 VAL VAL C . n D 2 34 LEU 34 318 318 LEU LEU C . n D 2 35 GLU 35 319 319 GLU GLU C . n D 2 36 ASN 36 320 320 ASN ASN C . n D 2 37 GLN 37 321 321 GLN GLN C . n D 2 38 ASN 38 322 322 ASN ASN C . n D 2 39 LYS 39 323 323 LYS LYS C . n D 2 40 THR 40 324 324 THR THR C . n D 2 41 LEU 41 325 325 LEU LEU C . n D 2 42 ILE 42 326 326 ILE ILE C . n D 2 43 GLU 43 327 327 GLU GLU C . n D 2 44 GLU 44 328 328 GLU GLU C . n D 2 45 LEU 45 329 329 LEU LEU C . n D 2 46 LYS 46 330 330 LYS LYS C . n D 2 47 ALA 47 331 331 ALA ALA C . n D 2 48 LEU 48 332 332 LEU LEU C . n D 2 49 LYS 49 333 333 LYS LYS C . n D 2 50 ASP 50 334 334 ASP ASP C . n D 2 51 LEU 51 335 335 LEU LEU C . n D 2 52 TYR 52 336 336 TYR TYR C . n D 2 53 SER 53 337 337 SER SER C . n D 2 54 HIS 54 338 338 HIS HIS C . n D 2 55 LYS 55 339 339 LYS LYS C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG 1 100 100 MG MO6 C . F 4 HOH 1 404 404 HOH HOH B . F 4 HOH 2 411 100 HOH MO6 B . G 4 HOH 1 401 401 HOH HOH D . H 4 HOH 1 403 403 HOH HOH A . H 4 HOH 2 406 406 HOH HOH A . H 4 HOH 3 409 409 HOH HOH A . H 4 HOH 4 413 100 HOH MO6 A . H 4 HOH 5 415 100 HOH MO6 A . I 4 HOH 1 400 400 HOH HOH C . I 4 HOH 2 402 402 HOH HOH C . I 4 HOH 3 405 405 HOH HOH C . I 4 HOH 4 407 407 HOH HOH C . I 4 HOH 5 408 408 HOH HOH C . I 4 HOH 6 410 410 HOH HOH C . I 4 HOH 7 412 100 HOH MO6 C . I 4 HOH 8 414 100 HOH MO6 C . I 4 HOH 9 416 100 HOH MO6 C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? F HOH . ? B HOH 411 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? H HOH . ? A HOH 413 ? 1_555 88.7 ? 2 O ? F HOH . ? B HOH 411 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? H HOH . ? A HOH 415 ? 1_555 91.8 ? 3 O ? H HOH . ? A HOH 413 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? H HOH . ? A HOH 415 ? 1_555 92.5 ? 4 O ? F HOH . ? B HOH 411 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 412 ? 1_555 176.7 ? 5 O ? H HOH . ? A HOH 413 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 412 ? 1_555 92.4 ? 6 O ? H HOH . ? A HOH 415 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 412 ? 1_555 85.1 ? 7 O ? F HOH . ? B HOH 411 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 414 ? 1_555 91.2 ? 8 O ? H HOH . ? A HOH 413 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 414 ? 1_555 178.9 ? 9 O ? H HOH . ? A HOH 415 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 414 ? 1_555 88.5 ? 10 O ? I HOH . ? C HOH 412 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 414 ? 1_555 87.8 ? 11 O ? F HOH . ? B HOH 411 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 416 ? 1_555 86.1 ? 12 O ? H HOH . ? A HOH 413 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 416 ? 1_555 83.7 ? 13 O ? H HOH . ? A HOH 415 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 416 ? 1_555 175.7 ? 14 O ? I HOH . ? C HOH 412 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 416 ? 1_555 97.1 ? 15 O ? I HOH . ? C HOH 414 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 416 ? 1_555 95.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-11-27 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_conn_angle 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.value' 10 4 'Structure model' '_struct_conn.pdbx_dist_value' 11 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 12 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 4 'Structure model' '_struct_ref_seq_dif.details' 24 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 TRUNCATE 'data reduction' . ? 2 EPMR phasing . ? 3 TNT refinement . ? 4 CCP4 'data scaling' '(TRUNCATE)' ? 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A GLU 287 ? ? CD A GLU 287 ? ? 1.606 1.515 0.091 0.015 N 2 1 CA A VAL 308 ? ? CB A VAL 308 ? ? 1.412 1.543 -0.131 0.021 N 3 1 CB A VAL 308 ? ? CG1 A VAL 308 ? ? 1.373 1.524 -0.151 0.021 N 4 1 CB A VAL 315 ? ? CG1 A VAL 315 ? ? 1.728 1.524 0.204 0.021 N 5 1 CG A GLU 327 ? ? CD A GLU 327 ? ? 1.618 1.515 0.103 0.015 N 6 1 C A HIS 338 ? ? N A LYS 339 ? ? 1.487 1.336 0.151 0.023 Y 7 1 CA A LYS 339 ? ? C A LYS 339 ? ? 1.842 1.525 0.317 0.026 N 8 1 C A LYS 339 ? ? O A LYS 339 ? ? 1.024 1.229 -0.205 0.019 N 9 1 CA C ALA 297 ? ? CB C ALA 297 ? ? 1.343 1.520 -0.177 0.021 N 10 1 CD1 C TYR 336 ? ? CE1 C TYR 336 ? ? 1.284 1.389 -0.105 0.015 N 11 1 CA C HIS 338 ? ? CB C HIS 338 ? ? 1.385 1.535 -0.150 0.022 N 12 1 N C LYS 339 ? ? CA C LYS 339 ? ? 1.670 1.459 0.211 0.020 N 13 1 CA C LYS 339 ? ? C C LYS 339 ? ? 1.789 1.525 0.264 0.026 N 14 1 C C LYS 339 ? ? O C LYS 339 ? ? 1.051 1.229 -0.178 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DC -11 ? ? "C4'" B DC -11 ? ? "C3'" B DC -11 ? ? 101.63 104.50 -2.87 0.40 N 2 1 "O4'" B DT -4 ? ? "C1'" B DT -4 ? ? N1 B DT -4 ? ? 111.65 108.30 3.35 0.30 N 3 1 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 111.24 108.30 2.94 0.30 N 4 1 "O4'" B DT 2 ? ? "C1'" B DT 2 ? ? N1 B DT 2 ? ? 111.10 108.30 2.80 0.30 N 5 1 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 110.67 108.30 2.37 0.30 N 6 1 "O4'" B DA 9 ? ? "C1'" B DA 9 ? ? N9 B DA 9 ? ? 110.34 108.30 2.04 0.30 N 7 1 "C3'" D DC -11 ? ? "O3'" D DC -11 ? ? P D DC -10 ? ? 127.39 119.70 7.69 1.20 Y 8 1 "O4'" D DT -8 ? ? "C1'" D DT -8 ? ? "C2'" D DT -8 ? ? 114.83 106.80 8.03 0.50 N 9 1 N1 D DT -8 ? ? "C1'" D DT -8 ? ? "C2'" D DT -8 ? ? 125.73 114.30 11.43 1.40 N 10 1 "O4'" D DT -8 ? ? "C1'" D DT -8 ? ? N1 D DT -8 ? ? 115.93 108.30 7.63 0.30 N 11 1 C6 D DT -8 ? ? N1 D DT -8 ? ? C2 D DT -8 ? ? 125.66 121.30 4.36 0.50 N 12 1 C5 D DT -8 ? ? C6 D DT -8 ? ? N1 D DT -8 ? ? 118.45 123.70 -5.25 0.60 N 13 1 C2 D DT -8 ? ? N1 D DT -8 ? ? "C1'" D DT -8 ? ? 105.14 118.20 -13.06 1.60 N 14 1 "O4'" D DG -7 ? ? "C1'" D DG -7 ? ? N9 D DG -7 ? ? 110.26 108.30 1.96 0.30 N 15 1 "O4'" D DC -1 ? ? "C4'" D DC -1 ? ? "C3'" D DC -1 ? ? 99.52 104.50 -4.98 0.40 N 16 1 "C1'" D DC -1 ? ? "O4'" D DC -1 ? ? "C4'" D DC -1 ? ? 104.01 110.10 -6.09 1.00 N 17 1 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 103.71 108.00 -4.29 0.70 N 18 1 "O4'" D DC 3 ? ? "C1'" D DC 3 ? ? N1 D DC 3 ? ? 110.69 108.30 2.39 0.30 N 19 1 "O4'" D DC 6 ? ? "C1'" D DC 6 ? ? N1 D DC 6 ? ? 110.47 108.30 2.17 0.30 N 20 1 "O4'" D DC 7 ? ? "C1'" D DC 7 ? ? N1 D DC 7 ? ? 111.37 108.30 3.07 0.30 N 21 1 "O4'" D DA 8 ? ? "C4'" D DA 8 ? ? "C3'" D DA 8 ? ? 100.74 104.50 -3.76 0.40 N 22 1 "O4'" D DA 9 ? ? "C1'" D DA 9 ? ? N9 D DA 9 ? ? 103.42 108.00 -4.58 0.70 N 23 1 NE A ARG 289 ? ? CZ A ARG 289 ? ? NH1 A ARG 289 ? ? 124.75 120.30 4.45 0.50 N 24 1 NE A ARG 289 ? ? CZ A ARG 289 ? ? NH2 A ARG 289 ? ? 117.22 120.30 -3.08 0.50 N 25 1 CA A LEU 311 ? ? CB A LEU 311 ? ? CG A LEU 311 ? ? 95.80 115.30 -19.50 2.30 N 26 1 CB A VAL 315 ? ? CA A VAL 315 ? ? C A VAL 315 ? ? 99.45 111.40 -11.95 1.90 N 27 1 CA A LEU 318 ? ? CB A LEU 318 ? ? CG A LEU 318 ? ? 98.03 115.30 -17.27 2.30 N 28 1 CB A LEU 318 ? ? CG A LEU 318 ? ? CD1 A LEU 318 ? ? 127.14 111.00 16.14 1.70 N 29 1 CB A LEU 325 ? ? CG A LEU 325 ? ? CD2 A LEU 325 ? ? 121.60 111.00 10.60 1.70 N 30 1 CA A LEU 329 ? ? CB A LEU 329 ? ? CG A LEU 329 ? ? 88.95 115.30 -26.35 2.30 N 31 1 CB A LEU 335 ? ? CG A LEU 335 ? ? CD2 A LEU 335 ? ? 123.05 111.00 12.05 1.70 N 32 1 CA A LYS 339 ? ? C A LYS 339 ? ? O A LYS 339 ? ? 104.47 120.10 -15.63 2.10 N 33 1 N C ARG 286 ? ? CA C ARG 286 ? ? C C ARG 286 ? ? 88.35 111.00 -22.65 2.70 N 34 1 CA C LEU 290 ? ? CB C LEU 290 ? ? CG C LEU 290 ? ? 101.27 115.30 -14.03 2.30 N 35 1 NE C ARG 301 ? ? CZ C ARG 301 ? ? NH2 C ARG 301 ? ? 116.86 120.30 -3.44 0.50 N 36 1 C C TYR 307 ? ? N C VAL 308 ? ? CA C VAL 308 ? ? 104.79 121.70 -16.91 2.50 Y 37 1 N C SER 310 ? ? CA C SER 310 ? ? CB C SER 310 ? ? 101.10 110.50 -9.40 1.50 N 38 1 CA C LEU 311 ? ? CB C LEU 311 ? ? CG C LEU 311 ? ? 133.44 115.30 18.14 2.30 N 39 1 CB C LEU 311 ? ? CG C LEU 311 ? ? CD2 C LEU 311 ? ? 124.88 111.00 13.88 1.70 N 40 1 C C ASN 322 ? ? N C LYS 323 ? ? CA C LYS 323 ? ? 102.25 121.70 -19.45 2.50 Y 41 1 OE1 C GLU 328 ? ? CD C GLU 328 ? ? OE2 C GLU 328 ? ? 130.85 123.30 7.55 1.20 N 42 1 CB C LEU 335 ? ? CA C LEU 335 ? ? C C LEU 335 ? ? 122.18 110.20 11.98 1.90 N 43 1 CA C TYR 336 ? ? CB C TYR 336 ? ? CG C TYR 336 ? ? 101.68 113.40 -11.72 1.90 N 44 1 CB C TYR 336 ? ? CG C TYR 336 ? ? CD1 C TYR 336 ? ? 116.93 121.00 -4.07 0.60 N 45 1 N C TYR 336 ? ? CA C TYR 336 ? ? C C TYR 336 ? ? 132.93 111.00 21.93 2.70 N 46 1 N C LYS 339 ? ? CA C LYS 339 ? ? C C LYS 339 ? ? 92.23 111.00 -18.77 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 286 ? ? -25.77 -47.45 2 1 GLU A 287 ? ? -64.59 -75.59 3 1 VAL A 288 ? ? -23.15 -45.62 4 1 ASN A 313 ? ? -67.84 -71.99 5 1 LYS A 330 ? ? -29.53 -39.21 6 1 ALA A 331 ? ? -62.28 -96.10 7 1 LEU A 332 ? ? -33.26 -24.05 8 1 LEU A 335 ? ? 155.85 13.90 9 1 SER A 337 ? ? 73.93 -22.16 10 1 HIS A 338 ? ? 154.56 -35.85 11 1 ARG C 294 ? ? -58.47 -72.71 12 1 ALA C 296 ? ? -47.15 -70.90 13 1 LYS C 303 ? ? -37.56 -77.06 14 1 TYR C 307 ? ? -55.75 -4.57 15 1 ASN C 313 ? ? -75.18 -78.00 16 1 ARG C 314 ? ? -12.65 -55.73 17 1 GLN C 321 ? ? -34.85 -74.11 18 1 LEU C 329 ? ? -48.49 -16.37 19 1 SER C 337 ? ? 79.79 -8.47 20 1 HIS C 338 ? ? 159.10 -69.46 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1DH3 'double helix' 1DH3 'b-form double helix' 1DH3 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 B DG 21 1_555 -0.513 -0.730 0.422 -8.119 3.989 -2.992 1 B_DC-10:DG10_D B -10 ? D 10 ? 19 1 1 A DT 3 1_555 B DA 20 1_555 -0.875 -0.545 0.605 -5.268 -16.322 -12.779 2 B_DT-9:DA9_D B -9 ? D 9 ? 20 1 1 A DT 4 1_555 B DA 19 1_555 -0.049 -0.486 0.923 -3.578 -5.525 1.494 3 B_DT-8:DA8_D B -8 ? D 8 ? 20 1 1 A DG 5 1_555 B DC 18 1_555 -0.227 -0.371 0.408 2.851 -2.288 -4.910 4 B_DG-7:DC7_D B -7 ? D 7 ? 19 1 1 A DG 6 1_555 B DC 17 1_555 -0.956 -0.689 0.187 -3.084 -8.669 -2.967 5 B_DG-6:DC6_D B -6 ? D 6 ? 19 1 1 A DC 7 1_555 B DG 16 1_555 -0.877 -0.316 0.108 -9.560 -6.799 -0.605 6 B_DC-5:DG5_D B -5 ? D 5 ? 19 1 1 A DT 8 1_555 B DA 15 1_555 0.167 -0.306 0.075 8.888 -4.637 -6.710 7 B_DT-4:DA4_D B -4 ? D 4 ? 20 1 1 A DG 9 1_555 B DC 14 1_555 0.449 -0.386 0.290 2.150 -15.523 -4.445 8 B_DG-3:DC3_D B -3 ? D 3 ? 19 1 1 A DA 10 1_555 B DT 13 1_555 1.379 -0.558 0.993 10.649 3.367 -5.044 9 B_DA-2:DT2_D B -2 ? D 2 ? 20 1 1 A DC 11 1_555 B DG 12 1_555 -0.097 -0.539 0.383 4.526 -6.362 -4.122 10 B_DC-1:DG1_D B -1 ? D 1 ? 19 1 1 A DG 12 1_555 B DC 11 1_555 0.345 -0.457 1.001 18.901 -3.653 -12.481 11 B_DG1:DC-1_D B 1 ? D -1 ? 19 1 1 A DT 13 1_555 B DA 10 1_555 -0.106 -0.066 0.948 -6.504 -11.098 -10.540 12 B_DT2:DA-2_D B 2 ? D -2 ? 20 1 1 A DC 14 1_555 B DG 9 1_555 -0.307 -0.009 1.023 -18.197 -2.872 0.912 13 B_DC3:DG-3_D B 3 ? D -3 ? 19 1 1 A DA 15 1_555 B DT 8 1_555 0.031 -0.344 0.422 -3.835 -3.315 10.218 14 B_DA4:DT-4_D B 4 ? D -4 ? 20 1 1 A DG 16 1_555 B DC 7 1_555 0.553 -0.547 0.632 2.822 9.814 -8.210 15 B_DG5:DC-5_D B 5 ? D -5 ? 19 1 1 A DC 17 1_555 B DG 6 1_555 -0.169 -0.529 0.068 -1.270 -1.356 0.488 16 B_DC6:DG-6_D B 6 ? D -6 ? 19 1 1 A DC 18 1_555 B DG 5 1_555 -2.742 0.501 -0.222 -9.450 5.476 24.419 17 B_DC7:DG-7_D B 7 ? D -7 ? ? ? 1 A DA 19 1_555 B DT 4 1_555 0.168 -0.145 0.649 -5.112 -10.040 -25.226 18 B_DA8:DT-8_D B 8 ? D -8 ? 20 1 1 A DA 20 1_555 B DT 3 1_555 -0.555 -0.153 -0.592 -21.107 -5.255 -24.702 19 B_DA9:DT-9_D B 9 ? D -9 ? 20 1 1 A DG 21 1_555 B DC 2 1_555 1.530 -0.405 0.475 -28.643 1.901 -9.603 20 B_DG10:DC-10_D B 10 ? D -10 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 21 1_555 A DT 3 1_555 B DA 20 1_555 -0.518 -0.721 3.351 2.199 -2.323 33.158 -0.860 1.280 3.352 -4.059 -3.842 33.308 1 BB_DC-10DT-9:DA9DG10_DD B -10 ? D 10 ? B -9 ? D 9 ? 1 A DT 3 1_555 B DA 20 1_555 A DT 4 1_555 B DA 19 1_555 1.387 -0.191 3.254 1.606 -5.803 34.864 0.549 -2.044 3.300 -9.597 -2.656 35.365 2 BB_DT-9DT-8:DA8DA9_DD B -9 ? D 9 ? B -8 ? D 8 ? 1 A DT 4 1_555 B DA 19 1_555 A DG 5 1_555 B DC 18 1_555 0.365 0.395 3.149 4.640 9.611 39.874 -0.460 -0.026 3.179 13.795 -6.660 41.222 3 BB_DT-8DG-7:DC7DA8_DD B -8 ? D 8 ? B -7 ? D 7 ? 1 A DG 5 1_555 B DC 18 1_555 A DG 6 1_555 B DC 17 1_555 -0.622 0.310 3.863 -2.640 -4.974 31.023 1.665 0.564 3.807 -9.204 4.885 31.517 4 BB_DG-7DG-6:DC6DC7_DD B -7 ? D 7 ? B -6 ? D 6 ? 1 A DG 6 1_555 B DC 17 1_555 A DC 7 1_555 B DG 16 1_555 0.381 -0.295 3.332 4.280 8.252 36.700 -1.534 -0.028 3.217 12.854 -6.667 37.820 5 BB_DG-6DC-5:DG5DC6_DD B -6 ? D 6 ? B -5 ? D 5 ? 1 A DC 7 1_555 B DG 16 1_555 A DT 8 1_555 B DA 15 1_555 -0.006 0.124 3.166 -5.349 -0.369 35.702 0.251 -0.723 3.132 -0.598 8.665 36.090 6 BB_DC-5DT-4:DA4DG5_DD B -5 ? D 5 ? B -4 ? D 4 ? 1 A DT 8 1_555 B DA 15 1_555 A DG 9 1_555 B DC 14 1_555 -0.564 0.277 3.397 0.232 2.128 41.083 0.155 0.829 3.403 3.030 -0.330 41.137 7 BB_DT-4DG-3:DC3DA4_DD B -4 ? D 4 ? B -3 ? D 3 ? 1 A DG 9 1_555 B DC 14 1_555 A DA 10 1_555 B DT 13 1_555 0.140 -0.600 3.001 -7.262 1.885 35.616 -1.200 -1.144 2.883 3.040 11.712 36.373 8 BB_DG-3DA-2:DT2DC3_DD B -3 ? D 3 ? B -2 ? D 2 ? 1 A DA 10 1_555 B DT 13 1_555 A DC 11 1_555 B DG 12 1_555 0.243 -1.214 3.465 6.994 -1.482 26.263 -2.181 1.378 3.474 -3.186 -15.041 27.202 9 BB_DA-2DC-1:DG1DT2_DD B -2 ? D 2 ? B -1 ? D 1 ? 1 A DC 11 1_555 B DG 12 1_555 A DG 12 1_555 B DC 11 1_555 0.078 0.028 3.020 -1.272 6.715 38.261 -0.713 -0.261 2.979 10.146 1.922 38.844 10 BB_DC-1DG1:DC-1DG1_DD B -1 ? D 1 ? B 1 ? D -1 ? 1 A DG 12 1_555 B DC 11 1_555 A DT 13 1_555 B DA 10 1_555 -0.174 -1.338 3.942 2.830 6.735 31.450 -3.798 0.897 3.558 12.219 -5.134 32.266 11 BB_DG1DT2:DA-2DC-1_DD B 1 ? D -1 ? B 2 ? D -2 ? 1 A DT 13 1_555 B DA 10 1_555 A DC 14 1_555 B DG 9 1_555 0.345 -0.385 3.878 -5.286 -0.730 32.164 -0.537 -1.699 3.782 -1.307 9.460 32.592 12 BB_DT2DC3:DG-3DA-2_DD B 2 ? D -2 ? B 3 ? D -3 ? 1 A DC 14 1_555 B DG 9 1_555 A DA 15 1_555 B DT 8 1_555 0.389 -0.110 2.642 5.315 2.523 40.510 -0.383 -0.083 2.659 3.620 -7.628 40.917 13 BB_DC3DA4:DT-4DG-3_DD B 3 ? D -3 ? B 4 ? D -4 ? 1 A DA 15 1_555 B DT 8 1_555 A DG 16 1_555 B DC 7 1_555 -0.769 -0.043 3.155 -1.799 -4.148 31.311 0.668 1.087 3.172 -7.636 3.312 31.628 14 BB_DA4DG5:DC-5DT-4_DD B 4 ? D -4 ? B 5 ? D -5 ? 1 A DG 16 1_555 B DC 7 1_555 A DC 17 1_555 B DG 6 1_555 0.007 -0.452 3.629 4.033 10.216 35.460 -2.207 0.581 3.357 16.297 -6.433 37.070 15 BB_DG5DC6:DG-6DC-5_DD B 5 ? D -5 ? B 6 ? D -6 ? 1 A DC 17 1_555 B DG 6 1_555 A DC 18 1_555 B DG 5 1_555 0.629 -0.119 3.531 -1.814 -1.230 16.491 0.478 -3.484 3.442 -4.263 6.289 16.635 16 BB_DC6DC7:DG-7DG-6_DD B 6 ? D -6 ? B 7 ? D -7 ? 1 A DC 18 1_555 B DG 5 1_555 A DA 19 1_555 B DT 4 1_555 -1.353 0.841 3.635 -4.506 -4.784 63.533 1.027 1.061 3.649 -4.531 4.268 63.837 17 BB_DC7DA8:DT-8DG-7_DD B 7 ? D -7 ? B 8 ? D -8 ? 1 A DA 19 1_555 B DT 4 1_555 A DA 20 1_555 B DT 3 1_555 -0.523 -0.326 3.786 9.894 3.161 24.786 -1.618 3.992 3.273 6.986 -21.865 26.843 18 BB_DA8DA9:DT-9DT-8_DD B 8 ? D -8 ? B 9 ? D -9 ? 1 A DA 20 1_555 B DT 3 1_555 A DG 21 1_555 B DC 2 1_555 -0.325 0.104 3.477 -12.379 -3.330 47.390 0.397 -0.616 3.440 -4.057 15.081 48.996 19 BB_DA9DG10:DC-10DT-9_DD B 9 ? D -9 ? B 10 ? D -10 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH #