data_1DH3 # _entry.id 1DH3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DH3 pdb_00001dh3 10.2210/pdb1dh3/pdb NDB PD0102 ? ? RCSB RCSB010086 ? ? WWPDB D_1000010086 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-11-27 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-03 5 'Structure model' 1 4 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_conn_angle 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.value' 10 4 'Structure model' '_struct_conn.pdbx_dist_value' 11 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 12 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 4 'Structure model' '_struct_ref_seq_dif.details' 24 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DH3 _pdbx_database_status.recvd_initial_deposition_date 1999-11-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schumacher, M.A.' 1 'Goodman, R.H.' 2 'Brennan, R.G.' 3 # _citation.id primary _citation.title ;The structure of a CREB bZIP.somatostatin CRE complex reveals the basis for selective dimerization and divalent cation-enhanced DNA binding ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 275 _citation.page_first 35242 _citation.page_last 35247 _citation.year 2000 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10952992 _citation.pdbx_database_id_DOI 10.1074/jbc.M007293200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schumacher, M.A.' 1 ? primary 'Goodman, R.H.' 2 ? primary 'Brennan, R.G.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*TP*TP*GP*GP*CP*TP*GP*AP*CP*GP*TP*CP*AP*GP*CP*CP*AP*AP*G)-3') ; 6424.148 2 ? ? ? ? 2 polymer man 'TRANSCRIPTION FACTOR CREB' 6686.831 2 ? ? 'RESIDUES 201-255' ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 17 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DC)(DC)(DT)(DT)(DG)(DG)(DC)(DT)(DG)(DA)(DC)(DG)(DT)(DC)(DA)(DG)(DC)(DC)(DA)(DA) (DG) ; CCTTGGCTGACGTCAGCCAAG B,D ? 2 'polypeptide(L)' no no KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSHK KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSHK A,C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DT n 1 4 DT n 1 5 DG n 1 6 DG n 1 7 DC n 1 8 DT n 1 9 DG n 1 10 DA n 1 11 DC n 1 12 DG n 1 13 DT n 1 14 DC n 1 15 DA n 1 16 DG n 1 17 DC n 1 18 DC n 1 19 DA n 1 20 DA n 1 21 DG n 2 1 LYS n 2 2 ARG n 2 3 GLU n 2 4 VAL n 2 5 ARG n 2 6 LEU n 2 7 MET n 2 8 LYS n 2 9 ASN n 2 10 ARG n 2 11 GLU n 2 12 ALA n 2 13 ALA n 2 14 ARG n 2 15 GLU n 2 16 SER n 2 17 ARG n 2 18 ARG n 2 19 LYS n 2 20 LYS n 2 21 LYS n 2 22 GLU n 2 23 TYR n 2 24 VAL n 2 25 LYS n 2 26 SER n 2 27 LEU n 2 28 GLU n 2 29 ASN n 2 30 ARG n 2 31 VAL n 2 32 ALA n 2 33 VAL n 2 34 LEU n 2 35 GLU n 2 36 ASN n 2 37 GLN n 2 38 ASN n 2 39 LYS n 2 40 THR n 2 41 LEU n 2 42 ILE n 2 43 GLU n 2 44 GLU n 2 45 LEU n 2 46 LYS n 2 47 ALA n 2 48 LEU n 2 49 LYS n 2 50 ASP n 2 51 LEU n 2 52 TYR n 2 53 SER n 2 54 HIS n 2 55 LYS n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET15B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 -11 -11 DC C B . n A 1 2 DC 2 -10 -10 DC C B . n A 1 3 DT 3 -9 -9 DT T B . n A 1 4 DT 4 -8 -8 DT T B . n A 1 5 DG 5 -7 -7 DG G B . n A 1 6 DG 6 -6 -6 DG G B . n A 1 7 DC 7 -5 -5 DC C B . n A 1 8 DT 8 -4 -4 DT T B . n A 1 9 DG 9 -3 -3 DG G B . n A 1 10 DA 10 -2 -2 DA A B . n A 1 11 DC 11 -1 -1 DC C B . n A 1 12 DG 12 1 1 DG G B . n A 1 13 DT 13 2 2 DT T B . n A 1 14 DC 14 3 3 DC C B . n A 1 15 DA 15 4 4 DA A B . n A 1 16 DG 16 5 5 DG G B . n A 1 17 DC 17 6 6 DC C B . n A 1 18 DC 18 7 7 DC C B . n A 1 19 DA 19 8 8 DA A B . n A 1 20 DA 20 9 9 DA A B . n A 1 21 DG 21 10 10 DG G B . n B 1 1 DC 1 -11 -11 DC C D . n B 1 2 DC 2 -10 -10 DC C D . n B 1 3 DT 3 -9 -9 DT T D . n B 1 4 DT 4 -8 -8 DT T D . n B 1 5 DG 5 -7 -7 DG G D . n B 1 6 DG 6 -6 -6 DG G D . n B 1 7 DC 7 -5 -5 DC C D . n B 1 8 DT 8 -4 -4 DT T D . n B 1 9 DG 9 -3 -3 DG G D . n B 1 10 DA 10 -2 -2 DA A D . n B 1 11 DC 11 -1 -1 DC C D . n B 1 12 DG 12 1 1 DG G D . n B 1 13 DT 13 2 2 DT T D . n B 1 14 DC 14 3 3 DC C D . n B 1 15 DA 15 4 4 DA A D . n B 1 16 DG 16 5 5 DG G D . n B 1 17 DC 17 6 6 DC C D . n B 1 18 DC 18 7 7 DC C D . n B 1 19 DA 19 8 8 DA A D . n B 1 20 DA 20 9 9 DA A D . n B 1 21 DG 21 10 10 DG G D . n C 2 1 LYS 1 285 285 LYS LYS A . n C 2 2 ARG 2 286 286 ARG ARG A . n C 2 3 GLU 3 287 287 GLU GLU A . n C 2 4 VAL 4 288 288 VAL VAL A . n C 2 5 ARG 5 289 289 ARG ARG A . n C 2 6 LEU 6 290 290 LEU LEU A . n C 2 7 MET 7 291 291 MET MET A . n C 2 8 LYS 8 292 292 LYS LYS A . n C 2 9 ASN 9 293 293 ASN ASN A . n C 2 10 ARG 10 294 294 ARG ARG A . n C 2 11 GLU 11 295 295 GLU GLU A . n C 2 12 ALA 12 296 296 ALA ALA A . n C 2 13 ALA 13 297 297 ALA ALA A . n C 2 14 ARG 14 298 298 ARG ARG A . n C 2 15 GLU 15 299 299 GLU GLU A . n C 2 16 SER 16 300 300 SER SER A . n C 2 17 ARG 17 301 301 ARG ARG A . n C 2 18 ARG 18 302 302 ARG ARG A . n C 2 19 LYS 19 303 303 LYS LYS A . n C 2 20 LYS 20 304 304 LYS LYS A . n C 2 21 LYS 21 305 305 LYS LYS A . n C 2 22 GLU 22 306 306 GLU GLU A . n C 2 23 TYR 23 307 307 TYR TYR A . n C 2 24 VAL 24 308 308 VAL VAL A . n C 2 25 LYS 25 309 309 LYS LYS A . n C 2 26 SER 26 310 310 SER SER A . n C 2 27 LEU 27 311 311 LEU LEU A . n C 2 28 GLU 28 312 312 GLU GLU A . n C 2 29 ASN 29 313 313 ASN ASN A . n C 2 30 ARG 30 314 314 ARG ARG A . n C 2 31 VAL 31 315 315 VAL VAL A . n C 2 32 ALA 32 316 316 ALA ALA A . n C 2 33 VAL 33 317 317 VAL VAL A . n C 2 34 LEU 34 318 318 LEU LEU A . n C 2 35 GLU 35 319 319 GLU GLU A . n C 2 36 ASN 36 320 320 ASN ASN A . n C 2 37 GLN 37 321 321 GLN GLN A . n C 2 38 ASN 38 322 322 ASN ASN A . n C 2 39 LYS 39 323 323 LYS LYS A . n C 2 40 THR 40 324 324 THR THR A . n C 2 41 LEU 41 325 325 LEU LEU A . n C 2 42 ILE 42 326 326 ILE ILE A . n C 2 43 GLU 43 327 327 GLU GLU A . n C 2 44 GLU 44 328 328 GLU GLU A . n C 2 45 LEU 45 329 329 LEU LEU A . n C 2 46 LYS 46 330 330 LYS LYS A . n C 2 47 ALA 47 331 331 ALA ALA A . n C 2 48 LEU 48 332 332 LEU LEU A . n C 2 49 LYS 49 333 333 LYS LYS A . n C 2 50 ASP 50 334 334 ASP ASP A . n C 2 51 LEU 51 335 335 LEU LEU A . n C 2 52 TYR 52 336 336 TYR TYR A . n C 2 53 SER 53 337 337 SER SER A . n C 2 54 HIS 54 338 338 HIS HIS A . n C 2 55 LYS 55 339 339 LYS LYS A . n D 2 1 LYS 1 285 285 LYS LYS C . n D 2 2 ARG 2 286 286 ARG ARG C . n D 2 3 GLU 3 287 287 GLU GLU C . n D 2 4 VAL 4 288 288 VAL VAL C . n D 2 5 ARG 5 289 289 ARG ARG C . n D 2 6 LEU 6 290 290 LEU LEU C . n D 2 7 MET 7 291 291 MET MET C . n D 2 8 LYS 8 292 292 LYS LYS C . n D 2 9 ASN 9 293 293 ASN ASN C . n D 2 10 ARG 10 294 294 ARG ARG C . n D 2 11 GLU 11 295 295 GLU GLU C . n D 2 12 ALA 12 296 296 ALA ALA C . n D 2 13 ALA 13 297 297 ALA ALA C . n D 2 14 ARG 14 298 298 ARG ARG C . n D 2 15 GLU 15 299 299 GLU GLU C . n D 2 16 SER 16 300 300 SER SER C . n D 2 17 ARG 17 301 301 ARG ARG C . n D 2 18 ARG 18 302 302 ARG ARG C . n D 2 19 LYS 19 303 303 LYS LYS C . n D 2 20 LYS 20 304 304 LYS LYS C . n D 2 21 LYS 21 305 305 LYS LYS C . n D 2 22 GLU 22 306 306 GLU GLU C . n D 2 23 TYR 23 307 307 TYR TYR C . n D 2 24 VAL 24 308 308 VAL VAL C . n D 2 25 LYS 25 309 309 LYS LYS C . n D 2 26 SER 26 310 310 SER SER C . n D 2 27 LEU 27 311 311 LEU LEU C . n D 2 28 GLU 28 312 312 GLU GLU C . n D 2 29 ASN 29 313 313 ASN ASN C . n D 2 30 ARG 30 314 314 ARG ARG C . n D 2 31 VAL 31 315 315 VAL VAL C . n D 2 32 ALA 32 316 316 ALA ALA C . n D 2 33 VAL 33 317 317 VAL VAL C . n D 2 34 LEU 34 318 318 LEU LEU C . n D 2 35 GLU 35 319 319 GLU GLU C . n D 2 36 ASN 36 320 320 ASN ASN C . n D 2 37 GLN 37 321 321 GLN GLN C . n D 2 38 ASN 38 322 322 ASN ASN C . n D 2 39 LYS 39 323 323 LYS LYS C . n D 2 40 THR 40 324 324 THR THR C . n D 2 41 LEU 41 325 325 LEU LEU C . n D 2 42 ILE 42 326 326 ILE ILE C . n D 2 43 GLU 43 327 327 GLU GLU C . n D 2 44 GLU 44 328 328 GLU GLU C . n D 2 45 LEU 45 329 329 LEU LEU C . n D 2 46 LYS 46 330 330 LYS LYS C . n D 2 47 ALA 47 331 331 ALA ALA C . n D 2 48 LEU 48 332 332 LEU LEU C . n D 2 49 LYS 49 333 333 LYS LYS C . n D 2 50 ASP 50 334 334 ASP ASP C . n D 2 51 LEU 51 335 335 LEU LEU C . n D 2 52 TYR 52 336 336 TYR TYR C . n D 2 53 SER 53 337 337 SER SER C . n D 2 54 HIS 54 338 338 HIS HIS C . n D 2 55 LYS 55 339 339 LYS LYS C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG 1 100 100 MG MO6 C . F 4 HOH 1 404 404 HOH HOH B . F 4 HOH 2 411 100 HOH MO6 B . G 4 HOH 1 401 401 HOH HOH D . H 4 HOH 1 403 403 HOH HOH A . H 4 HOH 2 406 406 HOH HOH A . H 4 HOH 3 409 409 HOH HOH A . H 4 HOH 4 413 100 HOH MO6 A . H 4 HOH 5 415 100 HOH MO6 A . I 4 HOH 1 400 400 HOH HOH C . I 4 HOH 2 402 402 HOH HOH C . I 4 HOH 3 405 405 HOH HOH C . I 4 HOH 4 407 407 HOH HOH C . I 4 HOH 5 408 408 HOH HOH C . I 4 HOH 6 410 410 HOH HOH C . I 4 HOH 7 412 100 HOH MO6 C . I 4 HOH 8 414 100 HOH MO6 C . I 4 HOH 9 416 100 HOH MO6 C . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 TRUNCATE 'data reduction' . ? 2 EPMR phasing . ? 3 TNT refinement . ? 4 CCP4 'data scaling' '(TRUNCATE)' ? 5 # _cell.entry_id 1DH3 _cell.length_a 110.610 _cell.length_b 49.320 _cell.length_c 79.250 _cell.angle_alpha 90.00 _cell.angle_beta 122.18 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DH3 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1DH3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.42 _exptl_crystal.density_percent_sol 64.01 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298. _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details 'PEG 8000, MGCL2, (NH4)2SO4, MES, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298.K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MGCL2 ? ? ? 1 2 1 '(NH4)2SO4' ? ? ? 1 3 1 MES ? ? ? 1 4 1 'PEG 8000' ? ? ? 1 5 2 'PEG 8000' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 298. _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0800 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 _diffrn_source.pdbx_wavelength 1.0800 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DH3 _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 10. _reflns.d_resolution_high 3.0 _reflns.number_obs 7316 _reflns.number_all 7436 _reflns.percent_possible_obs 90. _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17. _reflns.B_iso_Wilson_estimate 40. _reflns.pdbx_redundancy 5.7 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.0 _reflns_shell.d_res_low 3.2 _reflns_shell.percent_possible_all 95 _reflns_shell.Rmerge_I_obs 0.258 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 5.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1DH3 _refine.ls_number_reflns_obs 7316 _refine.ls_number_reflns_all 7436 _refine.pdbx_ls_sigma_I 1 _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10. _refine.ls_d_res_high 3.0 _refine.ls_percent_reflns_obs 98 _refine.ls_R_factor_obs 0.218 _refine.ls_R_factor_all 0.218 _refine.ls_R_factor_R_work 0.223 _refine.ls_R_factor_R_free 0.28 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10 _refine.ls_number_reflns_R_free 694 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;THE FIRST AND LAST TWO RESIDUES ARE DISORDERED AND NOT MODELED. THE DENSITY IS WEAK FOR RESIDUES 334-339 IN BOTH PROTEIN CHAINS. PROCHECK REVEALED NO BAD CONTACTS AND NO RAMACHANDRAN OUTLIERS ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 934 _refine_hist.pdbx_number_atoms_nucleic_acid 852 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 11 _refine_hist.number_atoms_total 1804 _refine_hist.d_res_high 3.0 _refine_hist.d_res_low 10. # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ? t_angle_deg 1.906 ? ? ? 'X-RAY DIFFRACTION' ? t_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? ? ? 'X-RAY DIFFRACTION' ? t_gen_planes ? ? ? ? 'X-RAY DIFFRACTION' ? t_it ? ? ? ? 'X-RAY DIFFRACTION' ? t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1DH3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1DH3 _struct.title 'CRYSTAL STRUCTURE OF A CREB BZIP-CRE COMPLEX REVEALS THE BASIS FOR CREB FAIMLY SELECTIVE DIMERIZATION AND DNA BINDING' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DH3 _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP CREB1_MOUSE 2 Q01147 ? ? ? 2 PDB 1DH3 1 1DH3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DH3 A 1 ? 55 ? Q01147 201 ? 255 ? 285 339 2 1 1DH3 C 1 ? 55 ? Q01147 201 ? 255 ? 285 339 3 2 1DH3 B 1 ? 21 ? 1DH3 -11 ? 10 ? -11 10 4 2 1DH3 D 1 ? 21 ? 1DH3 -11 ? 10 ? -11 10 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1DH3 SER A 16 ? UNP Q01147 CYS 216 'engineered mutation' 300 1 1 1DH3 SER A 26 ? UNP Q01147 CYS 226 'engineered mutation' 310 2 1 1DH3 SER A 16 ? UNP Q01147 CYS 253 'engineered mutation' 300 3 2 1DH3 SER C 16 ? UNP Q01147 CYS 216 'engineered mutation' 300 4 2 1DH3 SER C 26 ? UNP Q01147 CYS 226 'engineered mutation' 310 5 2 1DH3 SER C 16 ? UNP Q01147 CYS 253 'engineered mutation' 300 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS C 1 ? ASP C 50 ? LYS A 285 ASP A 334 1 ? 50 HELX_P HELX_P2 2 LYS D 1 ? LEU D 51 ? LYS C 285 LEU C 335 1 ? 51 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? F HOH . O ? ? ? 1_555 E MG . MG ? ? B HOH 411 C MG 100 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc2 metalc ? ? H HOH . O ? ? ? 1_555 E MG . MG ? ? A HOH 413 C MG 100 1_555 ? ? ? ? ? ? ? 2.085 ? ? metalc3 metalc ? ? H HOH . O ? ? ? 1_555 E MG . MG ? ? A HOH 415 C MG 100 1_555 ? ? ? ? ? ? ? 2.051 ? ? metalc4 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? C MG 100 C HOH 412 1_555 ? ? ? ? ? ? ? 2.147 ? ? metalc5 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? C MG 100 C HOH 414 1_555 ? ? ? ? ? ? ? 2.109 ? ? metalc6 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? C MG 100 C HOH 416 1_555 ? ? ? ? ? ? ? 2.102 ? ? hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 21 N1 ? ? B DC -10 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 21 O6 ? ? B DC -10 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 21 N2 ? ? B DC -10 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 19 N6 ? ? B DT -9 D DA 8 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog5 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 20 N1 ? ? B DT -9 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 20 N6 ? ? B DT -9 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 19 N1 ? ? B DT -8 D DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 19 N6 ? ? B DT -8 D DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 18 N3 ? ? B DG -7 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 18 O2 ? ? B DG -7 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 18 N4 ? ? B DG -7 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 17 N3 ? ? B DG -6 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 17 O2 ? ? B DG -6 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 17 N4 ? ? B DG -6 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 16 N1 ? ? B DC -5 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 16 O6 ? ? B DC -5 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 16 N2 ? ? B DC -5 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 15 N1 ? ? B DT -4 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 15 N6 ? ? B DT -4 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 14 N3 ? ? B DG -3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 14 O2 ? ? B DG -3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 14 N4 ? ? B DG -3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 13 N3 ? ? B DA -2 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 13 O4 ? ? B DA -2 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 12 N1 ? ? B DC -1 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 12 O6 ? ? B DC -1 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 12 N2 ? ? B DC -1 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 11 N3 ? ? B DG 1 D DC -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 11 O2 ? ? B DG 1 D DC -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 11 N4 ? ? B DG 1 D DC -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DA 10 N1 ? ? B DT 2 D DA -2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DA 10 N6 ? ? B DT 2 D DA -2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 14 N4 ? ? ? 1_555 B DT 8 O4 ? ? B DC 3 D DT -4 1_555 ? ? ? ? ? ? 'DC-DT MISPAIR' ? ? ? hydrog34 hydrog ? ? A DC 14 N3 ? ? ? 1_555 B DG 9 N1 ? ? B DC 3 D DG -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 14 N4 ? ? ? 1_555 B DG 9 O6 ? ? B DC 3 D DG -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 14 O2 ? ? ? 1_555 B DG 9 N2 ? ? B DC 3 D DG -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DA 15 N1 ? ? ? 1_555 B DT 8 N3 ? ? B DA 4 D DT -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DA 15 N6 ? ? ? 1_555 B DT 8 O4 ? ? B DA 4 D DT -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 16 N1 ? ? ? 1_555 B DC 7 N3 ? ? B DG 5 D DC -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 16 N2 ? ? ? 1_555 B DC 7 O2 ? ? B DG 5 D DC -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 16 O6 ? ? ? 1_555 B DC 7 N4 ? ? B DG 5 D DC -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 17 N3 ? ? ? 1_555 B DG 6 N1 ? ? B DC 6 D DG -6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DC 17 N4 ? ? ? 1_555 B DG 6 O6 ? ? B DC 6 D DG -6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DC 17 O2 ? ? ? 1_555 B DG 6 N2 ? ? B DC 6 D DG -6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DC 18 N3 ? ? ? 1_555 B DG 5 N2 ? ? B DC 7 D DG -7 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog46 hydrog ? ? A DA 19 N1 ? ? ? 1_555 B DT 4 N3 ? ? B DA 8 D DT -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DA 19 N6 ? ? ? 1_555 B DT 4 O4 ? ? B DA 8 D DT -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DA 20 N1 ? ? ? 1_555 B DT 3 N3 ? ? B DA 9 D DT -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DA 20 N6 ? ? ? 1_555 B DT 3 O4 ? ? B DA 9 D DT -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DG 21 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 10 D DC -10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A DG 21 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 10 D DC -10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A DG 21 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 10 D DC -10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? F HOH . ? B HOH 411 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? H HOH . ? A HOH 413 ? 1_555 88.7 ? 2 O ? F HOH . ? B HOH 411 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? H HOH . ? A HOH 415 ? 1_555 91.8 ? 3 O ? H HOH . ? A HOH 413 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? H HOH . ? A HOH 415 ? 1_555 92.5 ? 4 O ? F HOH . ? B HOH 411 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 412 ? 1_555 176.7 ? 5 O ? H HOH . ? A HOH 413 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 412 ? 1_555 92.4 ? 6 O ? H HOH . ? A HOH 415 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 412 ? 1_555 85.1 ? 7 O ? F HOH . ? B HOH 411 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 414 ? 1_555 91.2 ? 8 O ? H HOH . ? A HOH 413 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 414 ? 1_555 178.9 ? 9 O ? H HOH . ? A HOH 415 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 414 ? 1_555 88.5 ? 10 O ? I HOH . ? C HOH 412 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 414 ? 1_555 87.8 ? 11 O ? F HOH . ? B HOH 411 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 416 ? 1_555 86.1 ? 12 O ? H HOH . ? A HOH 413 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 416 ? 1_555 83.7 ? 13 O ? H HOH . ? A HOH 415 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 416 ? 1_555 175.7 ? 14 O ? I HOH . ? C HOH 412 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 416 ? 1_555 97.1 ? 15 O ? I HOH . ? C HOH 414 ? 1_555 MG ? E MG . ? C MG 100 ? 1_555 O ? I HOH . ? C HOH 416 ? 1_555 95.3 ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id C _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 100 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE MG C 100' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH H . ? HOH A 413 . ? 1_555 ? 2 AC1 7 HOH H . ? HOH A 415 . ? 1_555 ? 3 AC1 7 HOH F . ? HOH B 411 . ? 1_555 ? 4 AC1 7 LYS D 20 ? LYS C 304 . ? 1_555 ? 5 AC1 7 HOH I . ? HOH C 412 . ? 1_555 ? 6 AC1 7 HOH I . ? HOH C 414 . ? 1_555 ? 7 AC1 7 HOH I . ? HOH C 416 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A GLU 287 ? ? CD A GLU 287 ? ? 1.606 1.515 0.091 0.015 N 2 1 CA A VAL 308 ? ? CB A VAL 308 ? ? 1.412 1.543 -0.131 0.021 N 3 1 CB A VAL 308 ? ? CG1 A VAL 308 ? ? 1.373 1.524 -0.151 0.021 N 4 1 CB A VAL 315 ? ? CG1 A VAL 315 ? ? 1.728 1.524 0.204 0.021 N 5 1 CG A GLU 327 ? ? CD A GLU 327 ? ? 1.618 1.515 0.103 0.015 N 6 1 C A HIS 338 ? ? N A LYS 339 ? ? 1.487 1.336 0.151 0.023 Y 7 1 CA A LYS 339 ? ? C A LYS 339 ? ? 1.842 1.525 0.317 0.026 N 8 1 C A LYS 339 ? ? O A LYS 339 ? ? 1.024 1.229 -0.205 0.019 N 9 1 CA C ALA 297 ? ? CB C ALA 297 ? ? 1.343 1.520 -0.177 0.021 N 10 1 CD1 C TYR 336 ? ? CE1 C TYR 336 ? ? 1.284 1.389 -0.105 0.015 N 11 1 CA C HIS 338 ? ? CB C HIS 338 ? ? 1.385 1.535 -0.150 0.022 N 12 1 N C LYS 339 ? ? CA C LYS 339 ? ? 1.670 1.459 0.211 0.020 N 13 1 CA C LYS 339 ? ? C C LYS 339 ? ? 1.789 1.525 0.264 0.026 N 14 1 C C LYS 339 ? ? O C LYS 339 ? ? 1.051 1.229 -0.178 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DC -11 ? ? "C4'" B DC -11 ? ? "C3'" B DC -11 ? ? 101.63 104.50 -2.87 0.40 N 2 1 "O4'" B DT -4 ? ? "C1'" B DT -4 ? ? N1 B DT -4 ? ? 111.65 108.30 3.35 0.30 N 3 1 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 111.24 108.30 2.94 0.30 N 4 1 "O4'" B DT 2 ? ? "C1'" B DT 2 ? ? N1 B DT 2 ? ? 111.10 108.30 2.80 0.30 N 5 1 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 110.67 108.30 2.37 0.30 N 6 1 "O4'" B DA 9 ? ? "C1'" B DA 9 ? ? N9 B DA 9 ? ? 110.34 108.30 2.04 0.30 N 7 1 "C3'" D DC -11 ? ? "O3'" D DC -11 ? ? P D DC -10 ? ? 127.39 119.70 7.69 1.20 Y 8 1 "O4'" D DT -8 ? ? "C1'" D DT -8 ? ? "C2'" D DT -8 ? ? 114.83 106.80 8.03 0.50 N 9 1 N1 D DT -8 ? ? "C1'" D DT -8 ? ? "C2'" D DT -8 ? ? 125.73 114.30 11.43 1.40 N 10 1 "O4'" D DT -8 ? ? "C1'" D DT -8 ? ? N1 D DT -8 ? ? 115.93 108.30 7.63 0.30 N 11 1 C6 D DT -8 ? ? N1 D DT -8 ? ? C2 D DT -8 ? ? 125.66 121.30 4.36 0.50 N 12 1 C5 D DT -8 ? ? C6 D DT -8 ? ? N1 D DT -8 ? ? 118.45 123.70 -5.25 0.60 N 13 1 C2 D DT -8 ? ? N1 D DT -8 ? ? "C1'" D DT -8 ? ? 105.14 118.20 -13.06 1.60 N 14 1 "O4'" D DG -7 ? ? "C1'" D DG -7 ? ? N9 D DG -7 ? ? 110.26 108.30 1.96 0.30 N 15 1 "O4'" D DC -1 ? ? "C4'" D DC -1 ? ? "C3'" D DC -1 ? ? 99.52 104.50 -4.98 0.40 N 16 1 "C1'" D DC -1 ? ? "O4'" D DC -1 ? ? "C4'" D DC -1 ? ? 104.01 110.10 -6.09 1.00 N 17 1 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 103.71 108.00 -4.29 0.70 N 18 1 "O4'" D DC 3 ? ? "C1'" D DC 3 ? ? N1 D DC 3 ? ? 110.69 108.30 2.39 0.30 N 19 1 "O4'" D DC 6 ? ? "C1'" D DC 6 ? ? N1 D DC 6 ? ? 110.47 108.30 2.17 0.30 N 20 1 "O4'" D DC 7 ? ? "C1'" D DC 7 ? ? N1 D DC 7 ? ? 111.37 108.30 3.07 0.30 N 21 1 "O4'" D DA 8 ? ? "C4'" D DA 8 ? ? "C3'" D DA 8 ? ? 100.74 104.50 -3.76 0.40 N 22 1 "O4'" D DA 9 ? ? "C1'" D DA 9 ? ? N9 D DA 9 ? ? 103.42 108.00 -4.58 0.70 N 23 1 NE A ARG 289 ? ? CZ A ARG 289 ? ? NH1 A ARG 289 ? ? 124.75 120.30 4.45 0.50 N 24 1 NE A ARG 289 ? ? CZ A ARG 289 ? ? NH2 A ARG 289 ? ? 117.22 120.30 -3.08 0.50 N 25 1 CA A LEU 311 ? ? CB A LEU 311 ? ? CG A LEU 311 ? ? 95.80 115.30 -19.50 2.30 N 26 1 CB A VAL 315 ? ? CA A VAL 315 ? ? C A VAL 315 ? ? 99.45 111.40 -11.95 1.90 N 27 1 CA A LEU 318 ? ? CB A LEU 318 ? ? CG A LEU 318 ? ? 98.03 115.30 -17.27 2.30 N 28 1 CB A LEU 318 ? ? CG A LEU 318 ? ? CD1 A LEU 318 ? ? 127.14 111.00 16.14 1.70 N 29 1 CB A LEU 325 ? ? CG A LEU 325 ? ? CD2 A LEU 325 ? ? 121.60 111.00 10.60 1.70 N 30 1 CA A LEU 329 ? ? CB A LEU 329 ? ? CG A LEU 329 ? ? 88.95 115.30 -26.35 2.30 N 31 1 CB A LEU 335 ? ? CG A LEU 335 ? ? CD2 A LEU 335 ? ? 123.05 111.00 12.05 1.70 N 32 1 CA A LYS 339 ? ? C A LYS 339 ? ? O A LYS 339 ? ? 104.47 120.10 -15.63 2.10 N 33 1 N C ARG 286 ? ? CA C ARG 286 ? ? C C ARG 286 ? ? 88.35 111.00 -22.65 2.70 N 34 1 CA C LEU 290 ? ? CB C LEU 290 ? ? CG C LEU 290 ? ? 101.27 115.30 -14.03 2.30 N 35 1 NE C ARG 301 ? ? CZ C ARG 301 ? ? NH2 C ARG 301 ? ? 116.86 120.30 -3.44 0.50 N 36 1 C C TYR 307 ? ? N C VAL 308 ? ? CA C VAL 308 ? ? 104.79 121.70 -16.91 2.50 Y 37 1 N C SER 310 ? ? CA C SER 310 ? ? CB C SER 310 ? ? 101.10 110.50 -9.40 1.50 N 38 1 CA C LEU 311 ? ? CB C LEU 311 ? ? CG C LEU 311 ? ? 133.44 115.30 18.14 2.30 N 39 1 CB C LEU 311 ? ? CG C LEU 311 ? ? CD2 C LEU 311 ? ? 124.88 111.00 13.88 1.70 N 40 1 C C ASN 322 ? ? N C LYS 323 ? ? CA C LYS 323 ? ? 102.25 121.70 -19.45 2.50 Y 41 1 OE1 C GLU 328 ? ? CD C GLU 328 ? ? OE2 C GLU 328 ? ? 130.85 123.30 7.55 1.20 N 42 1 CB C LEU 335 ? ? CA C LEU 335 ? ? C C LEU 335 ? ? 122.18 110.20 11.98 1.90 N 43 1 CA C TYR 336 ? ? CB C TYR 336 ? ? CG C TYR 336 ? ? 101.68 113.40 -11.72 1.90 N 44 1 CB C TYR 336 ? ? CG C TYR 336 ? ? CD1 C TYR 336 ? ? 116.93 121.00 -4.07 0.60 N 45 1 N C TYR 336 ? ? CA C TYR 336 ? ? C C TYR 336 ? ? 132.93 111.00 21.93 2.70 N 46 1 N C LYS 339 ? ? CA C LYS 339 ? ? C C LYS 339 ? ? 92.23 111.00 -18.77 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 286 ? ? -25.77 -47.45 2 1 GLU A 287 ? ? -64.59 -75.59 3 1 VAL A 288 ? ? -23.15 -45.62 4 1 ASN A 313 ? ? -67.84 -71.99 5 1 LYS A 330 ? ? -29.53 -39.21 6 1 ALA A 331 ? ? -62.28 -96.10 7 1 LEU A 332 ? ? -33.26 -24.05 8 1 LEU A 335 ? ? 155.85 13.90 9 1 SER A 337 ? ? 73.93 -22.16 10 1 HIS A 338 ? ? 154.56 -35.85 11 1 ARG C 294 ? ? -58.47 -72.71 12 1 ALA C 296 ? ? -47.15 -70.90 13 1 LYS C 303 ? ? -37.56 -77.06 14 1 TYR C 307 ? ? -55.75 -4.57 15 1 ASN C 313 ? ? -75.18 -78.00 16 1 ARG C 314 ? ? -12.65 -55.73 17 1 GLN C 321 ? ? -34.85 -74.11 18 1 LEU C 329 ? ? -48.49 -16.37 19 1 SER C 337 ? ? 79.79 -8.47 20 1 HIS C 338 ? ? 159.10 -69.46 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 HIS N N N N 270 HIS CA C N S 271 HIS C C N N 272 HIS O O N N 273 HIS CB C N N 274 HIS CG C Y N 275 HIS ND1 N Y N 276 HIS CD2 C Y N 277 HIS CE1 C Y N 278 HIS NE2 N Y N 279 HIS OXT O N N 280 HIS H H N N 281 HIS H2 H N N 282 HIS HA H N N 283 HIS HB2 H N N 284 HIS HB3 H N N 285 HIS HD1 H N N 286 HIS HD2 H N N 287 HIS HE1 H N N 288 HIS HE2 H N N 289 HIS HXT H N N 290 HOH O O N N 291 HOH H1 H N N 292 HOH H2 H N N 293 ILE N N N N 294 ILE CA C N S 295 ILE C C N N 296 ILE O O N N 297 ILE CB C N S 298 ILE CG1 C N N 299 ILE CG2 C N N 300 ILE CD1 C N N 301 ILE OXT O N N 302 ILE H H N N 303 ILE H2 H N N 304 ILE HA H N N 305 ILE HB H N N 306 ILE HG12 H N N 307 ILE HG13 H N N 308 ILE HG21 H N N 309 ILE HG22 H N N 310 ILE HG23 H N N 311 ILE HD11 H N N 312 ILE HD12 H N N 313 ILE HD13 H N N 314 ILE HXT H N N 315 LEU N N N N 316 LEU CA C N S 317 LEU C C N N 318 LEU O O N N 319 LEU CB C N N 320 LEU CG C N N 321 LEU CD1 C N N 322 LEU CD2 C N N 323 LEU OXT O N N 324 LEU H H N N 325 LEU H2 H N N 326 LEU HA H N N 327 LEU HB2 H N N 328 LEU HB3 H N N 329 LEU HG H N N 330 LEU HD11 H N N 331 LEU HD12 H N N 332 LEU HD13 H N N 333 LEU HD21 H N N 334 LEU HD22 H N N 335 LEU HD23 H N N 336 LEU HXT H N N 337 LYS N N N N 338 LYS CA C N S 339 LYS C C N N 340 LYS O O N N 341 LYS CB C N N 342 LYS CG C N N 343 LYS CD C N N 344 LYS CE C N N 345 LYS NZ N N N 346 LYS OXT O N N 347 LYS H H N N 348 LYS H2 H N N 349 LYS HA H N N 350 LYS HB2 H N N 351 LYS HB3 H N N 352 LYS HG2 H N N 353 LYS HG3 H N N 354 LYS HD2 H N N 355 LYS HD3 H N N 356 LYS HE2 H N N 357 LYS HE3 H N N 358 LYS HZ1 H N N 359 LYS HZ2 H N N 360 LYS HZ3 H N N 361 LYS HXT H N N 362 MET N N N N 363 MET CA C N S 364 MET C C N N 365 MET O O N N 366 MET CB C N N 367 MET CG C N N 368 MET SD S N N 369 MET CE C N N 370 MET OXT O N N 371 MET H H N N 372 MET H2 H N N 373 MET HA H N N 374 MET HB2 H N N 375 MET HB3 H N N 376 MET HG2 H N N 377 MET HG3 H N N 378 MET HE1 H N N 379 MET HE2 H N N 380 MET HE3 H N N 381 MET HXT H N N 382 MG MG MG N N 383 SER N N N N 384 SER CA C N S 385 SER C C N N 386 SER O O N N 387 SER CB C N N 388 SER OG O N N 389 SER OXT O N N 390 SER H H N N 391 SER H2 H N N 392 SER HA H N N 393 SER HB2 H N N 394 SER HB3 H N N 395 SER HG H N N 396 SER HXT H N N 397 THR N N N N 398 THR CA C N S 399 THR C C N N 400 THR O O N N 401 THR CB C N R 402 THR OG1 O N N 403 THR CG2 C N N 404 THR OXT O N N 405 THR H H N N 406 THR H2 H N N 407 THR HA H N N 408 THR HB H N N 409 THR HG1 H N N 410 THR HG21 H N N 411 THR HG22 H N N 412 THR HG23 H N N 413 THR HXT H N N 414 TYR N N N N 415 TYR CA C N S 416 TYR C C N N 417 TYR O O N N 418 TYR CB C N N 419 TYR CG C Y N 420 TYR CD1 C Y N 421 TYR CD2 C Y N 422 TYR CE1 C Y N 423 TYR CE2 C Y N 424 TYR CZ C Y N 425 TYR OH O N N 426 TYR OXT O N N 427 TYR H H N N 428 TYR H2 H N N 429 TYR HA H N N 430 TYR HB2 H N N 431 TYR HB3 H N N 432 TYR HD1 H N N 433 TYR HD2 H N N 434 TYR HE1 H N N 435 TYR HE2 H N N 436 TYR HH H N N 437 TYR HXT H N N 438 VAL N N N N 439 VAL CA C N S 440 VAL C C N N 441 VAL O O N N 442 VAL CB C N N 443 VAL CG1 C N N 444 VAL CG2 C N N 445 VAL OXT O N N 446 VAL H H N N 447 VAL H2 H N N 448 VAL HA H N N 449 VAL HB H N N 450 VAL HG11 H N N 451 VAL HG12 H N N 452 VAL HG13 H N N 453 VAL HG21 H N N 454 VAL HG22 H N N 455 VAL HG23 H N N 456 VAL HXT H N N 457 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 HIS N CA sing N N 269 HIS N H sing N N 270 HIS N H2 sing N N 271 HIS CA C sing N N 272 HIS CA CB sing N N 273 HIS CA HA sing N N 274 HIS C O doub N N 275 HIS C OXT sing N N 276 HIS CB CG sing N N 277 HIS CB HB2 sing N N 278 HIS CB HB3 sing N N 279 HIS CG ND1 sing Y N 280 HIS CG CD2 doub Y N 281 HIS ND1 CE1 doub Y N 282 HIS ND1 HD1 sing N N 283 HIS CD2 NE2 sing Y N 284 HIS CD2 HD2 sing N N 285 HIS CE1 NE2 sing Y N 286 HIS CE1 HE1 sing N N 287 HIS NE2 HE2 sing N N 288 HIS OXT HXT sing N N 289 HOH O H1 sing N N 290 HOH O H2 sing N N 291 ILE N CA sing N N 292 ILE N H sing N N 293 ILE N H2 sing N N 294 ILE CA C sing N N 295 ILE CA CB sing N N 296 ILE CA HA sing N N 297 ILE C O doub N N 298 ILE C OXT sing N N 299 ILE CB CG1 sing N N 300 ILE CB CG2 sing N N 301 ILE CB HB sing N N 302 ILE CG1 CD1 sing N N 303 ILE CG1 HG12 sing N N 304 ILE CG1 HG13 sing N N 305 ILE CG2 HG21 sing N N 306 ILE CG2 HG22 sing N N 307 ILE CG2 HG23 sing N N 308 ILE CD1 HD11 sing N N 309 ILE CD1 HD12 sing N N 310 ILE CD1 HD13 sing N N 311 ILE OXT HXT sing N N 312 LEU N CA sing N N 313 LEU N H sing N N 314 LEU N H2 sing N N 315 LEU CA C sing N N 316 LEU CA CB sing N N 317 LEU CA HA sing N N 318 LEU C O doub N N 319 LEU C OXT sing N N 320 LEU CB CG sing N N 321 LEU CB HB2 sing N N 322 LEU CB HB3 sing N N 323 LEU CG CD1 sing N N 324 LEU CG CD2 sing N N 325 LEU CG HG sing N N 326 LEU CD1 HD11 sing N N 327 LEU CD1 HD12 sing N N 328 LEU CD1 HD13 sing N N 329 LEU CD2 HD21 sing N N 330 LEU CD2 HD22 sing N N 331 LEU CD2 HD23 sing N N 332 LEU OXT HXT sing N N 333 LYS N CA sing N N 334 LYS N H sing N N 335 LYS N H2 sing N N 336 LYS CA C sing N N 337 LYS CA CB sing N N 338 LYS CA HA sing N N 339 LYS C O doub N N 340 LYS C OXT sing N N 341 LYS CB CG sing N N 342 LYS CB HB2 sing N N 343 LYS CB HB3 sing N N 344 LYS CG CD sing N N 345 LYS CG HG2 sing N N 346 LYS CG HG3 sing N N 347 LYS CD CE sing N N 348 LYS CD HD2 sing N N 349 LYS CD HD3 sing N N 350 LYS CE NZ sing N N 351 LYS CE HE2 sing N N 352 LYS CE HE3 sing N N 353 LYS NZ HZ1 sing N N 354 LYS NZ HZ2 sing N N 355 LYS NZ HZ3 sing N N 356 LYS OXT HXT sing N N 357 MET N CA sing N N 358 MET N H sing N N 359 MET N H2 sing N N 360 MET CA C sing N N 361 MET CA CB sing N N 362 MET CA HA sing N N 363 MET C O doub N N 364 MET C OXT sing N N 365 MET CB CG sing N N 366 MET CB HB2 sing N N 367 MET CB HB3 sing N N 368 MET CG SD sing N N 369 MET CG HG2 sing N N 370 MET CG HG3 sing N N 371 MET SD CE sing N N 372 MET CE HE1 sing N N 373 MET CE HE2 sing N N 374 MET CE HE3 sing N N 375 MET OXT HXT sing N N 376 SER N CA sing N N 377 SER N H sing N N 378 SER N H2 sing N N 379 SER CA C sing N N 380 SER CA CB sing N N 381 SER CA HA sing N N 382 SER C O doub N N 383 SER C OXT sing N N 384 SER CB OG sing N N 385 SER CB HB2 sing N N 386 SER CB HB3 sing N N 387 SER OG HG sing N N 388 SER OXT HXT sing N N 389 THR N CA sing N N 390 THR N H sing N N 391 THR N H2 sing N N 392 THR CA C sing N N 393 THR CA CB sing N N 394 THR CA HA sing N N 395 THR C O doub N N 396 THR C OXT sing N N 397 THR CB OG1 sing N N 398 THR CB CG2 sing N N 399 THR CB HB sing N N 400 THR OG1 HG1 sing N N 401 THR CG2 HG21 sing N N 402 THR CG2 HG22 sing N N 403 THR CG2 HG23 sing N N 404 THR OXT HXT sing N N 405 TYR N CA sing N N 406 TYR N H sing N N 407 TYR N H2 sing N N 408 TYR CA C sing N N 409 TYR CA CB sing N N 410 TYR CA HA sing N N 411 TYR C O doub N N 412 TYR C OXT sing N N 413 TYR CB CG sing N N 414 TYR CB HB2 sing N N 415 TYR CB HB3 sing N N 416 TYR CG CD1 doub Y N 417 TYR CG CD2 sing Y N 418 TYR CD1 CE1 sing Y N 419 TYR CD1 HD1 sing N N 420 TYR CD2 CE2 doub Y N 421 TYR CD2 HD2 sing N N 422 TYR CE1 CZ doub Y N 423 TYR CE1 HE1 sing N N 424 TYR CE2 CZ sing Y N 425 TYR CE2 HE2 sing N N 426 TYR CZ OH sing N N 427 TYR OH HH sing N N 428 TYR OXT HXT sing N N 429 VAL N CA sing N N 430 VAL N H sing N N 431 VAL N H2 sing N N 432 VAL CA C sing N N 433 VAL CA CB sing N N 434 VAL CA HA sing N N 435 VAL C O doub N N 436 VAL C OXT sing N N 437 VAL CB CG1 sing N N 438 VAL CB CG2 sing N N 439 VAL CB HB sing N N 440 VAL CG1 HG11 sing N N 441 VAL CG1 HG12 sing N N 442 VAL CG1 HG13 sing N N 443 VAL CG2 HG21 sing N N 444 VAL CG2 HG22 sing N N 445 VAL CG2 HG23 sing N N 446 VAL OXT HXT sing N N 447 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1DH3 'double helix' 1DH3 'b-form double helix' 1DH3 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 B DG 21 1_555 -0.513 -0.730 0.422 -8.119 3.989 -2.992 1 B_DC-10:DG10_D B -10 ? D 10 ? 19 1 1 A DT 3 1_555 B DA 20 1_555 -0.875 -0.545 0.605 -5.268 -16.322 -12.779 2 B_DT-9:DA9_D B -9 ? D 9 ? 20 1 1 A DT 4 1_555 B DA 19 1_555 -0.049 -0.486 0.923 -3.578 -5.525 1.494 3 B_DT-8:DA8_D B -8 ? D 8 ? 20 1 1 A DG 5 1_555 B DC 18 1_555 -0.227 -0.371 0.408 2.851 -2.288 -4.910 4 B_DG-7:DC7_D B -7 ? D 7 ? 19 1 1 A DG 6 1_555 B DC 17 1_555 -0.956 -0.689 0.187 -3.084 -8.669 -2.967 5 B_DG-6:DC6_D B -6 ? D 6 ? 19 1 1 A DC 7 1_555 B DG 16 1_555 -0.877 -0.316 0.108 -9.560 -6.799 -0.605 6 B_DC-5:DG5_D B -5 ? D 5 ? 19 1 1 A DT 8 1_555 B DA 15 1_555 0.167 -0.306 0.075 8.888 -4.637 -6.710 7 B_DT-4:DA4_D B -4 ? D 4 ? 20 1 1 A DG 9 1_555 B DC 14 1_555 0.449 -0.386 0.290 2.150 -15.523 -4.445 8 B_DG-3:DC3_D B -3 ? D 3 ? 19 1 1 A DA 10 1_555 B DT 13 1_555 1.379 -0.558 0.993 10.649 3.367 -5.044 9 B_DA-2:DT2_D B -2 ? D 2 ? 20 1 1 A DC 11 1_555 B DG 12 1_555 -0.097 -0.539 0.383 4.526 -6.362 -4.122 10 B_DC-1:DG1_D B -1 ? D 1 ? 19 1 1 A DG 12 1_555 B DC 11 1_555 0.345 -0.457 1.001 18.901 -3.653 -12.481 11 B_DG1:DC-1_D B 1 ? D -1 ? 19 1 1 A DT 13 1_555 B DA 10 1_555 -0.106 -0.066 0.948 -6.504 -11.098 -10.540 12 B_DT2:DA-2_D B 2 ? D -2 ? 20 1 1 A DC 14 1_555 B DG 9 1_555 -0.307 -0.009 1.023 -18.197 -2.872 0.912 13 B_DC3:DG-3_D B 3 ? D -3 ? 19 1 1 A DA 15 1_555 B DT 8 1_555 0.031 -0.344 0.422 -3.835 -3.315 10.218 14 B_DA4:DT-4_D B 4 ? D -4 ? 20 1 1 A DG 16 1_555 B DC 7 1_555 0.553 -0.547 0.632 2.822 9.814 -8.210 15 B_DG5:DC-5_D B 5 ? D -5 ? 19 1 1 A DC 17 1_555 B DG 6 1_555 -0.169 -0.529 0.068 -1.270 -1.356 0.488 16 B_DC6:DG-6_D B 6 ? D -6 ? 19 1 1 A DC 18 1_555 B DG 5 1_555 -2.742 0.501 -0.222 -9.450 5.476 24.419 17 B_DC7:DG-7_D B 7 ? D -7 ? ? ? 1 A DA 19 1_555 B DT 4 1_555 0.168 -0.145 0.649 -5.112 -10.040 -25.226 18 B_DA8:DT-8_D B 8 ? D -8 ? 20 1 1 A DA 20 1_555 B DT 3 1_555 -0.555 -0.153 -0.592 -21.107 -5.255 -24.702 19 B_DA9:DT-9_D B 9 ? D -9 ? 20 1 1 A DG 21 1_555 B DC 2 1_555 1.530 -0.405 0.475 -28.643 1.901 -9.603 20 B_DG10:DC-10_D B 10 ? D -10 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 21 1_555 A DT 3 1_555 B DA 20 1_555 -0.518 -0.721 3.351 2.199 -2.323 33.158 -0.860 1.280 3.352 -4.059 -3.842 33.308 1 BB_DC-10DT-9:DA9DG10_DD B -10 ? D 10 ? B -9 ? D 9 ? 1 A DT 3 1_555 B DA 20 1_555 A DT 4 1_555 B DA 19 1_555 1.387 -0.191 3.254 1.606 -5.803 34.864 0.549 -2.044 3.300 -9.597 -2.656 35.365 2 BB_DT-9DT-8:DA8DA9_DD B -9 ? D 9 ? B -8 ? D 8 ? 1 A DT 4 1_555 B DA 19 1_555 A DG 5 1_555 B DC 18 1_555 0.365 0.395 3.149 4.640 9.611 39.874 -0.460 -0.026 3.179 13.795 -6.660 41.222 3 BB_DT-8DG-7:DC7DA8_DD B -8 ? D 8 ? B -7 ? D 7 ? 1 A DG 5 1_555 B DC 18 1_555 A DG 6 1_555 B DC 17 1_555 -0.622 0.310 3.863 -2.640 -4.974 31.023 1.665 0.564 3.807 -9.204 4.885 31.517 4 BB_DG-7DG-6:DC6DC7_DD B -7 ? D 7 ? B -6 ? D 6 ? 1 A DG 6 1_555 B DC 17 1_555 A DC 7 1_555 B DG 16 1_555 0.381 -0.295 3.332 4.280 8.252 36.700 -1.534 -0.028 3.217 12.854 -6.667 37.820 5 BB_DG-6DC-5:DG5DC6_DD B -6 ? D 6 ? B -5 ? D 5 ? 1 A DC 7 1_555 B DG 16 1_555 A DT 8 1_555 B DA 15 1_555 -0.006 0.124 3.166 -5.349 -0.369 35.702 0.251 -0.723 3.132 -0.598 8.665 36.090 6 BB_DC-5DT-4:DA4DG5_DD B -5 ? D 5 ? B -4 ? D 4 ? 1 A DT 8 1_555 B DA 15 1_555 A DG 9 1_555 B DC 14 1_555 -0.564 0.277 3.397 0.232 2.128 41.083 0.155 0.829 3.403 3.030 -0.330 41.137 7 BB_DT-4DG-3:DC3DA4_DD B -4 ? D 4 ? B -3 ? D 3 ? 1 A DG 9 1_555 B DC 14 1_555 A DA 10 1_555 B DT 13 1_555 0.140 -0.600 3.001 -7.262 1.885 35.616 -1.200 -1.144 2.883 3.040 11.712 36.373 8 BB_DG-3DA-2:DT2DC3_DD B -3 ? D 3 ? B -2 ? D 2 ? 1 A DA 10 1_555 B DT 13 1_555 A DC 11 1_555 B DG 12 1_555 0.243 -1.214 3.465 6.994 -1.482 26.263 -2.181 1.378 3.474 -3.186 -15.041 27.202 9 BB_DA-2DC-1:DG1DT2_DD B -2 ? D 2 ? B -1 ? D 1 ? 1 A DC 11 1_555 B DG 12 1_555 A DG 12 1_555 B DC 11 1_555 0.078 0.028 3.020 -1.272 6.715 38.261 -0.713 -0.261 2.979 10.146 1.922 38.844 10 BB_DC-1DG1:DC-1DG1_DD B -1 ? D 1 ? B 1 ? D -1 ? 1 A DG 12 1_555 B DC 11 1_555 A DT 13 1_555 B DA 10 1_555 -0.174 -1.338 3.942 2.830 6.735 31.450 -3.798 0.897 3.558 12.219 -5.134 32.266 11 BB_DG1DT2:DA-2DC-1_DD B 1 ? D -1 ? B 2 ? D -2 ? 1 A DT 13 1_555 B DA 10 1_555 A DC 14 1_555 B DG 9 1_555 0.345 -0.385 3.878 -5.286 -0.730 32.164 -0.537 -1.699 3.782 -1.307 9.460 32.592 12 BB_DT2DC3:DG-3DA-2_DD B 2 ? D -2 ? B 3 ? D -3 ? 1 A DC 14 1_555 B DG 9 1_555 A DA 15 1_555 B DT 8 1_555 0.389 -0.110 2.642 5.315 2.523 40.510 -0.383 -0.083 2.659 3.620 -7.628 40.917 13 BB_DC3DA4:DT-4DG-3_DD B 3 ? D -3 ? B 4 ? D -4 ? 1 A DA 15 1_555 B DT 8 1_555 A DG 16 1_555 B DC 7 1_555 -0.769 -0.043 3.155 -1.799 -4.148 31.311 0.668 1.087 3.172 -7.636 3.312 31.628 14 BB_DA4DG5:DC-5DT-4_DD B 4 ? D -4 ? B 5 ? D -5 ? 1 A DG 16 1_555 B DC 7 1_555 A DC 17 1_555 B DG 6 1_555 0.007 -0.452 3.629 4.033 10.216 35.460 -2.207 0.581 3.357 16.297 -6.433 37.070 15 BB_DG5DC6:DG-6DC-5_DD B 5 ? D -5 ? B 6 ? D -6 ? 1 A DC 17 1_555 B DG 6 1_555 A DC 18 1_555 B DG 5 1_555 0.629 -0.119 3.531 -1.814 -1.230 16.491 0.478 -3.484 3.442 -4.263 6.289 16.635 16 BB_DC6DC7:DG-7DG-6_DD B 6 ? D -6 ? B 7 ? D -7 ? 1 A DC 18 1_555 B DG 5 1_555 A DA 19 1_555 B DT 4 1_555 -1.353 0.841 3.635 -4.506 -4.784 63.533 1.027 1.061 3.649 -4.531 4.268 63.837 17 BB_DC7DA8:DT-8DG-7_DD B 7 ? D -7 ? B 8 ? D -8 ? 1 A DA 19 1_555 B DT 4 1_555 A DA 20 1_555 B DT 3 1_555 -0.523 -0.326 3.786 9.894 3.161 24.786 -1.618 3.992 3.273 6.986 -21.865 26.843 18 BB_DA8DA9:DT-9DT-8_DD B 8 ? D -8 ? B 9 ? D -9 ? 1 A DA 20 1_555 B DT 3 1_555 A DG 21 1_555 B DC 2 1_555 -0.325 0.104 3.477 -12.379 -3.330 47.390 0.397 -0.616 3.440 -4.057 15.081 48.996 19 BB_DA9DG10:DC-10DT-9_DD B 9 ? D -9 ? B 10 ? D -10 ? # _atom_sites.entry_id 1DH3 _atom_sites.fract_transf_matrix[1][1] 0.009041 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005689 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020276 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014909 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_