data_1DHH
# 
_entry.id   1DHH 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.392 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1DHH         pdb_00001dhh 10.2210/pdb1dhh/pdb 
WWPDB D_1000172781 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1996-04-03 
2 'Structure model' 1 1 2008-03-24 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2022-02-16 
5 'Structure model' 1 4 2024-05-22 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Database references'       
4 4 'Structure model' 'Derived calculations'      
5 4 'Structure model' Other                       
6 5 'Structure model' 'Data collection'           
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' database_2            
2 4 'Structure model' pdbx_database_status  
3 4 'Structure model' pdbx_struct_assembly  
4 4 'Structure model' pdbx_struct_oper_list 
5 5 'Structure model' chem_comp_atom        
6 5 'Structure model' chem_comp_bond        
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 4 'Structure model' '_database_2.pdbx_DOI'                
2 4 'Structure model' '_database_2.pdbx_database_accession' 
3 4 'Structure model' '_pdbx_database_status.process_site'  
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1DHH 
_pdbx_database_status.recvd_initial_deposition_date   1995-10-18 
_pdbx_database_status.deposit_site                    ? 
_pdbx_database_status.process_site                    BNL 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_mr                  REL 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
_pdbx_database_related.db_name        PDB 
_pdbx_database_related.db_id          1DRN 
_pdbx_database_related.details        'MINIMIZED AVERAGE STRUCTURE' 
_pdbx_database_related.content_type   unspecified 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Nishizaki, T.' 1 
'Iwai, S.'      2 
'Ohkubo, T.'    3 
'Kojima, C.'    4 
'Nakamura, H.'  5 
'Kyogoku, Y.'   6 
'Ohtsuka, E.'   7 
# 
_citation.id                        primary 
_citation.title                     
;Solution Strucutres of DNA duplexes containing a DNA x RNA hybrid region, d(GG)r(AGAU)d(GAC) x d(GTCATCTCC) and d(GGAGA)r(UGAC) x d(GTCATCTCC).
;
_citation.journal_abbrev            Biochemistry 
_citation.journal_volume            35 
_citation.page_first                4016 
_citation.page_last                 4025 
_citation.year                      1996 
_citation.journal_id_ASTM           BICHAW 
_citation.country                   US 
_citation.journal_id_ISSN           0006-2960 
_citation.journal_id_CSD            0033 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   8672435 
_citation.pdbx_database_id_DOI      10.1021/bi9519821 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Nishizaki, T.' 1 ? 
primary 'Iwai, S.'      2 ? 
primary 'Ohkubo, T.'    3 ? 
primary 'Kojima, C.'    4 ? 
primary 'Nakamura, H.'  5 ? 
primary 'Kyogoku, Y.'   6 ? 
primary 'Ohtsuka, E.'   7 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer syn 
;DNA/RNA (5'-D(*GP*G)-R(P*AP*GP*AP*U)-D(P*GP*AP*C)-3')
;
2854.832 1 ? ? ? 'CRYSTALLIZATION CONDITIONS\: PH 7.0, 298K, 100MM NACL, 50MM NA PHOSPHATE, 3MM EDTA' 
2 polymer syn 
;DNA (5'-D(*GP*TP*CP*AP*TP*CP*TP*CP*C)-3')
;
2666.761 1 ? ? ? 'CRYSTALLIZATION CONDITIONS\: PH 7.0, 298K, 100MM NACL, 50MM NA PHOSPHATE, 3MM EDTA' 
# 
loop_
_entity_keywords.entity_id 
_entity_keywords.text 
1 'RIBONUCLEIC ACID'                       
2 'DEOXYRIBONUCLEIC ACID/RIBONUCLEIC ACID' 
# 
loop_
_entity_name_com.entity_id 
_entity_name_com.name 
1 DHD 
2 DHD 
# 
loop_
_entity_poly.entity_id 
_entity_poly.type 
_entity_poly.nstd_linkage 
_entity_poly.nstd_monomer 
_entity_poly.pdbx_seq_one_letter_code 
_entity_poly.pdbx_seq_one_letter_code_can 
_entity_poly.pdbx_strand_id 
_entity_poly.pdbx_target_identifier 
1 'polydeoxyribonucleotide/polyribonucleotide hybrid' no no '(DG)(DG)AGAU(DG)(DA)(DC)'             GGAGAUGAC A ? 
2 polydeoxyribonucleotide                             no no '(DG)(DT)(DC)(DA)(DT)(DC)(DT)(DC)(DC)' GTCATCTCC B ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 DG n 
1 2 DG n 
1 3 A  n 
1 4 G  n 
1 5 A  n 
1 6 U  n 
1 7 DG n 
1 8 DA n 
1 9 DC n 
2 1 DG n 
2 2 DT n 
2 3 DC n 
2 4 DA n 
2 5 DT n 
2 6 DC n 
2 7 DT n 
2 8 DC n 
2 9 DC n 
# 
loop_
_pdbx_entity_src_syn.entity_id 
_pdbx_entity_src_syn.pdbx_src_id 
_pdbx_entity_src_syn.pdbx_alt_source_flag 
_pdbx_entity_src_syn.pdbx_beg_seq_num 
_pdbx_entity_src_syn.pdbx_end_seq_num 
_pdbx_entity_src_syn.organism_scientific 
_pdbx_entity_src_syn.organism_common_name 
_pdbx_entity_src_syn.ncbi_taxonomy_id 
_pdbx_entity_src_syn.details 
1 1 sample ? ? ? ? ? 'A SUBSTRATE OF RNASE H' 
2 1 sample ? ? ? ? ? 'A SUBSTRATE OF RNASE H' 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
A  'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE"         ? 'C10 H14 N5 O7 P' 347.221 
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O7 P'  307.197 
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ? 'C10 H15 N2 O8 P' 322.208 
G  'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE"         ? 'C10 H14 N5 O8 P' 363.221 
U  'RNA linking' y "URIDINE-5'-MONOPHOSPHATE"           ? 'C9 H13 N2 O9 P'  324.181 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 DG 1 1  1  DG G A . n 
A 1 2 DG 2 2  2  DG G A . n 
A 1 3 A  3 3  3  A  A A . n 
A 1 4 G  4 4  4  G  G A . n 
A 1 5 A  5 5  5  A  A A . n 
A 1 6 U  6 6  6  U  U A . n 
A 1 7 DG 7 7  7  DG G A . n 
A 1 8 DA 8 8  8  DA A A . n 
A 1 9 DC 9 9  9  DC C A . n 
B 2 1 DG 1 10 10 DG G B . n 
B 2 2 DT 2 11 11 DT T B . n 
B 2 3 DC 3 12 12 DC C B . n 
B 2 4 DA 4 13 13 DA A B . n 
B 2 5 DT 5 14 14 DT T B . n 
B 2 6 DC 6 15 15 DC C B . n 
B 2 7 DT 7 16 16 DT T B . n 
B 2 8 DC 8 17 17 DC C B . n 
B 2 9 DC 9 18 18 DC C B . n 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
X-PLOR 'model building' . ? 1 
X-PLOR refinement       . ? 2 
X-PLOR phasing          . ? 3 
# 
_cell.entry_id           1DHH 
_cell.length_a           1.000 
_cell.length_b           1.000 
_cell.length_c           1.000 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              1 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         1DHH 
_symmetry.space_group_name_H-M             'P 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                1 
# 
_exptl.entry_id          1DHH 
_exptl.method            'SOLUTION NMR' 
_exptl.crystals_number   ? 
# 
_database_PDB_matrix.entry_id          1DHH 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1DHH 
_struct.title                     
'NMR SOLUTION STRUCTURE OF THE DNA DUPLEX CONTAINING DNA/RNA HYBRID REGION, D(GG)R(AGAU)D(GAC)/D(GTCATCTCC)' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1DHH 
_struct_keywords.pdbx_keywords   'DNA-RNA HYBRID' 
_struct_keywords.text            'DNA/RNA HYBRID IN DNA DUPLEX, DNA-RNA HYBRID' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
# 
loop_
_struct_ref.id 
_struct_ref.entity_id 
_struct_ref.db_name 
_struct_ref.db_code 
_struct_ref.pdbx_db_accession 
_struct_ref.pdbx_align_begin 
_struct_ref.pdbx_seq_one_letter_code 
_struct_ref.pdbx_db_isoform 
1 1 PDB 1DHH 1DHH ? ? ? 
2 2 PDB 1DHH 1DHH ? ? ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1DHH A 1 ? 9 ? 1DHH 1  ? 9  ? 1  9  
2 2 1DHH B 1 ? 9 ? 1DHH 10 ? 18 ? 10 18 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id        1 
_struct_biol.details   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 1 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog2  hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 1 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog3  hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 1 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog4  hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 2 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog5  hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 2 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog6  hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 2 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog7  hydrog ? ? A A  3 N1 ? ? ? 1_555 B DT 7 N3 ? ? A A  3 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog8  hydrog ? ? A A  3 N6 ? ? ? 1_555 B DT 7 O4 ? ? A A  3 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog9  hydrog ? ? A G  4 N1 ? ? ? 1_555 B DC 6 N3 ? ? A G  4 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog10 hydrog ? ? A G  4 N2 ? ? ? 1_555 B DC 6 O2 ? ? A G  4 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog11 hydrog ? ? A G  4 O6 ? ? ? 1_555 B DC 6 N4 ? ? A G  4 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog12 hydrog ? ? A A  5 N1 ? ? ? 1_555 B DT 5 N3 ? ? A A  5 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog13 hydrog ? ? A A  5 N6 ? ? ? 1_555 B DT 5 O4 ? ? A A  5 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog14 hydrog ? ? A U  6 N3 ? ? ? 1_555 B DA 4 N1 ? ? A U  6 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog15 hydrog ? ? A U  6 O4 ? ? ? 1_555 B DA 4 N6 ? ? A U  6 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog16 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 7 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog17 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 7 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog18 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 7 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog19 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 8 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog20 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 8 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 9 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 9 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 9 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "O4'" A DG 1  ? ? "C1'" A DG 1  ? ? N9    A DG 1  ? ? 112.36 108.30 4.06  0.30 N 
2  1 N7    A DG 1  ? ? C8    A DG 1  ? ? N9    A DG 1  ? ? 117.49 113.10 4.39  0.50 N 
3  1 C8    A DG 1  ? ? N9    A DG 1  ? ? C4    A DG 1  ? ? 103.71 106.40 -2.69 0.40 N 
4  1 "O4'" A DG 2  ? ? "C1'" A DG 2  ? ? N9    A DG 2  ? ? 112.52 108.30 4.22  0.30 N 
5  1 N7    A DG 2  ? ? C8    A DG 2  ? ? N9    A DG 2  ? ? 117.72 113.10 4.62  0.50 N 
6  1 C8    A DG 2  ? ? N9    A DG 2  ? ? C4    A DG 2  ? ? 103.95 106.40 -2.45 0.40 N 
7  1 N7    A A  3  ? ? C8    A A  3  ? ? N9    A A  3  ? ? 117.64 113.80 3.84  0.50 N 
8  1 "C3'" A G  4  ? ? "C2'" A G  4  ? ? "C1'" A G  4  ? ? 106.93 101.50 5.43  0.80 N 
9  1 N7    A G  4  ? ? C8    A G  4  ? ? N9    A G  4  ? ? 117.66 113.10 4.56  0.50 N 
10 1 "C3'" A A  5  ? ? "C2'" A A  5  ? ? "C1'" A A  5  ? ? 106.48 101.50 4.98  0.80 N 
11 1 N7    A A  5  ? ? C8    A A  5  ? ? N9    A A  5  ? ? 118.05 113.80 4.25  0.50 N 
12 1 "O4'" A DG 7  ? ? "C1'" A DG 7  ? ? N9    A DG 7  ? ? 110.87 108.30 2.57  0.30 N 
13 1 N7    A DG 7  ? ? C8    A DG 7  ? ? N9    A DG 7  ? ? 117.86 113.10 4.76  0.50 N 
14 1 C8    A DG 7  ? ? N9    A DG 7  ? ? C4    A DG 7  ? ? 103.97 106.40 -2.43 0.40 N 
15 1 "O4'" A DA 8  ? ? "C1'" A DA 8  ? ? N9    A DA 8  ? ? 110.84 108.30 2.54  0.30 N 
16 1 N7    A DA 8  ? ? C8    A DA 8  ? ? N9    A DA 8  ? ? 117.61 113.80 3.81  0.50 N 
17 1 "O4'" A DC 9  ? ? "C1'" A DC 9  ? ? N1    A DC 9  ? ? 111.36 108.30 3.06  0.30 N 
18 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9    B DG 10 ? ? 111.25 108.30 2.95  0.30 N 
19 1 N7    B DG 10 ? ? C8    B DG 10 ? ? N9    B DG 10 ? ? 117.73 113.10 4.63  0.50 N 
20 1 C8    B DG 10 ? ? N9    B DG 10 ? ? C4    B DG 10 ? ? 103.82 106.40 -2.58 0.40 N 
21 1 "O4'" B DT 11 ? ? "C1'" B DT 11 ? ? N1    B DT 11 ? ? 111.63 108.30 3.33  0.30 N 
22 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1    B DC 12 ? ? 110.82 108.30 2.52  0.30 N 
23 1 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9    B DA 13 ? ? 110.60 108.30 2.30  0.30 N 
24 1 N7    B DA 13 ? ? C8    B DA 13 ? ? N9    B DA 13 ? ? 117.56 113.80 3.76  0.50 N 
25 1 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1    B DT 14 ? ? 110.66 108.30 2.36  0.30 N 
26 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1    B DC 15 ? ? 111.09 108.30 2.79  0.30 N 
27 1 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1    B DT 16 ? ? 110.89 108.30 2.59  0.30 N 
28 1 "O4'" B DC 17 ? ? "C1'" B DC 17 ? ? N1    B DC 17 ? ? 110.95 108.30 2.65  0.30 N 
29 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1    B DC 18 ? ? 112.59 108.30 4.29  0.30 N 
# 
loop_
_pdbx_validate_planes.id 
_pdbx_validate_planes.PDB_model_num 
_pdbx_validate_planes.auth_comp_id 
_pdbx_validate_planes.auth_asym_id 
_pdbx_validate_planes.auth_seq_id 
_pdbx_validate_planes.PDB_ins_code 
_pdbx_validate_planes.label_alt_id 
_pdbx_validate_planes.rmsd 
_pdbx_validate_planes.type 
1 1 A A 3 ? ? 0.052 'SIDE CHAIN' 
2 1 U A 6 ? ? 0.057 'SIDE CHAIN' 
# 
_pdbx_nmr_ensemble.entry_id                                      1DHH 
_pdbx_nmr_ensemble.conformers_calculated_total_number            ? 
_pdbx_nmr_ensemble.conformers_submitted_total_number             1 
_pdbx_nmr_ensemble.conformer_selection_criteria                  ? 
_pdbx_nmr_ensemble.average_constraints_per_residue               ? 
_pdbx_nmr_ensemble.average_constraint_violations_per_residue     ? 
_pdbx_nmr_ensemble.maximum_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.average_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.distance_constraint_violation_method          ? 
_pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.average_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.torsion_angle_constraint_violation_method     ? 
# 
loop_
_pdbx_nmr_exptl_sample.solution_id 
_pdbx_nmr_exptl_sample.component 
_pdbx_nmr_exptl_sample.concentration 
_pdbx_nmr_exptl_sample.concentration_units 
_pdbx_nmr_exptl_sample.isotopic_labeling 
1 NACL           100 mM ? 
1 'NA PHOSPHATE' 50  mM ? 
1 EDTA           3   mM ? 
# 
_pdbx_nmr_exptl_sample_conditions.conditions_id       1 
_pdbx_nmr_exptl_sample_conditions.temperature         298 
_pdbx_nmr_exptl_sample_conditions.pressure            ? 
_pdbx_nmr_exptl_sample_conditions.pH                  7.0 
_pdbx_nmr_exptl_sample_conditions.ionic_strength      ? 
_pdbx_nmr_exptl_sample_conditions.pressure_units      . 
_pdbx_nmr_exptl_sample_conditions.temperature_units   K 
# 
_pdbx_nmr_refine.entry_id           1DHH 
_pdbx_nmr_refine.method             'MOLECULAR DYNAMICS, MATRIX RELAXATION' 
_pdbx_nmr_refine.details            
;RMSD BOND DISTANCES 0.0077 ANGSTROMS RMSD BOND ANGLES 1.40 DEGREES NUMBER OF ATOMS USED IN REFINEMENT. NUMBER OF PROTEIN ATOMS 0 NUMBER OF NUCLEIC ACID ATOMS 366 NUMBER OF HETEROGEN ATOMS 0 NUMBER OF SOLVENT ATOMS 0 THE STRUCTURES WAS REFINED BY A COMBINATION OF RESTRAINED MOLECULAR DYNAMICS USING THE X-PLOR (V3.1F) PROGRAM (BRUNGER 1988) AND FULL RELAXATION MATRIX REFINEMENT OF THE TWO-DIMENSIONAL NUCLEAR OVERHAUSER EFFECT SPECTRUM AT 150 MSEC.
;
_pdbx_nmr_refine.software_ordinal   1 
# 
_pdbx_nmr_software.name             X-PLOR 
_pdbx_nmr_software.version          3.1F 
_pdbx_nmr_software.classification   refinement 
_pdbx_nmr_software.authors          BRUNGER 
_pdbx_nmr_software.ordinal          1 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
A  OP3    O N N 1   
A  P      P N N 2   
A  OP1    O N N 3   
A  OP2    O N N 4   
A  "O5'"  O N N 5   
A  "C5'"  C N N 6   
A  "C4'"  C N R 7   
A  "O4'"  O N N 8   
A  "C3'"  C N S 9   
A  "O3'"  O N N 10  
A  "C2'"  C N R 11  
A  "O2'"  O N N 12  
A  "C1'"  C N R 13  
A  N9     N Y N 14  
A  C8     C Y N 15  
A  N7     N Y N 16  
A  C5     C Y N 17  
A  C6     C Y N 18  
A  N6     N N N 19  
A  N1     N Y N 20  
A  C2     C Y N 21  
A  N3     N Y N 22  
A  C4     C Y N 23  
A  HOP3   H N N 24  
A  HOP2   H N N 25  
A  "H5'"  H N N 26  
A  "H5''" H N N 27  
A  "H4'"  H N N 28  
A  "H3'"  H N N 29  
A  "HO3'" H N N 30  
A  "H2'"  H N N 31  
A  "HO2'" H N N 32  
A  "H1'"  H N N 33  
A  H8     H N N 34  
A  H61    H N N 35  
A  H62    H N N 36  
A  H2     H N N 37  
DA OP3    O N N 38  
DA P      P N N 39  
DA OP1    O N N 40  
DA OP2    O N N 41  
DA "O5'"  O N N 42  
DA "C5'"  C N N 43  
DA "C4'"  C N R 44  
DA "O4'"  O N N 45  
DA "C3'"  C N S 46  
DA "O3'"  O N N 47  
DA "C2'"  C N N 48  
DA "C1'"  C N R 49  
DA N9     N Y N 50  
DA C8     C Y N 51  
DA N7     N Y N 52  
DA C5     C Y N 53  
DA C6     C Y N 54  
DA N6     N N N 55  
DA N1     N Y N 56  
DA C2     C Y N 57  
DA N3     N Y N 58  
DA C4     C Y N 59  
DA HOP3   H N N 60  
DA HOP2   H N N 61  
DA "H5'"  H N N 62  
DA "H5''" H N N 63  
DA "H4'"  H N N 64  
DA "H3'"  H N N 65  
DA "HO3'" H N N 66  
DA "H2'"  H N N 67  
DA "H2''" H N N 68  
DA "H1'"  H N N 69  
DA H8     H N N 70  
DA H61    H N N 71  
DA H62    H N N 72  
DA H2     H N N 73  
DC OP3    O N N 74  
DC P      P N N 75  
DC OP1    O N N 76  
DC OP2    O N N 77  
DC "O5'"  O N N 78  
DC "C5'"  C N N 79  
DC "C4'"  C N R 80  
DC "O4'"  O N N 81  
DC "C3'"  C N S 82  
DC "O3'"  O N N 83  
DC "C2'"  C N N 84  
DC "C1'"  C N R 85  
DC N1     N N N 86  
DC C2     C N N 87  
DC O2     O N N 88  
DC N3     N N N 89  
DC C4     C N N 90  
DC N4     N N N 91  
DC C5     C N N 92  
DC C6     C N N 93  
DC HOP3   H N N 94  
DC HOP2   H N N 95  
DC "H5'"  H N N 96  
DC "H5''" H N N 97  
DC "H4'"  H N N 98  
DC "H3'"  H N N 99  
DC "HO3'" H N N 100 
DC "H2'"  H N N 101 
DC "H2''" H N N 102 
DC "H1'"  H N N 103 
DC H41    H N N 104 
DC H42    H N N 105 
DC H5     H N N 106 
DC H6     H N N 107 
DG OP3    O N N 108 
DG P      P N N 109 
DG OP1    O N N 110 
DG OP2    O N N 111 
DG "O5'"  O N N 112 
DG "C5'"  C N N 113 
DG "C4'"  C N R 114 
DG "O4'"  O N N 115 
DG "C3'"  C N S 116 
DG "O3'"  O N N 117 
DG "C2'"  C N N 118 
DG "C1'"  C N R 119 
DG N9     N Y N 120 
DG C8     C Y N 121 
DG N7     N Y N 122 
DG C5     C Y N 123 
DG C6     C N N 124 
DG O6     O N N 125 
DG N1     N N N 126 
DG C2     C N N 127 
DG N2     N N N 128 
DG N3     N N N 129 
DG C4     C Y N 130 
DG HOP3   H N N 131 
DG HOP2   H N N 132 
DG "H5'"  H N N 133 
DG "H5''" H N N 134 
DG "H4'"  H N N 135 
DG "H3'"  H N N 136 
DG "HO3'" H N N 137 
DG "H2'"  H N N 138 
DG "H2''" H N N 139 
DG "H1'"  H N N 140 
DG H8     H N N 141 
DG H1     H N N 142 
DG H21    H N N 143 
DG H22    H N N 144 
DT OP3    O N N 145 
DT P      P N N 146 
DT OP1    O N N 147 
DT OP2    O N N 148 
DT "O5'"  O N N 149 
DT "C5'"  C N N 150 
DT "C4'"  C N R 151 
DT "O4'"  O N N 152 
DT "C3'"  C N S 153 
DT "O3'"  O N N 154 
DT "C2'"  C N N 155 
DT "C1'"  C N R 156 
DT N1     N N N 157 
DT C2     C N N 158 
DT O2     O N N 159 
DT N3     N N N 160 
DT C4     C N N 161 
DT O4     O N N 162 
DT C5     C N N 163 
DT C7     C N N 164 
DT C6     C N N 165 
DT HOP3   H N N 166 
DT HOP2   H N N 167 
DT "H5'"  H N N 168 
DT "H5''" H N N 169 
DT "H4'"  H N N 170 
DT "H3'"  H N N 171 
DT "HO3'" H N N 172 
DT "H2'"  H N N 173 
DT "H2''" H N N 174 
DT "H1'"  H N N 175 
DT H3     H N N 176 
DT H71    H N N 177 
DT H72    H N N 178 
DT H73    H N N 179 
DT H6     H N N 180 
G  OP3    O N N 181 
G  P      P N N 182 
G  OP1    O N N 183 
G  OP2    O N N 184 
G  "O5'"  O N N 185 
G  "C5'"  C N N 186 
G  "C4'"  C N R 187 
G  "O4'"  O N N 188 
G  "C3'"  C N S 189 
G  "O3'"  O N N 190 
G  "C2'"  C N R 191 
G  "O2'"  O N N 192 
G  "C1'"  C N R 193 
G  N9     N Y N 194 
G  C8     C Y N 195 
G  N7     N Y N 196 
G  C5     C Y N 197 
G  C6     C N N 198 
G  O6     O N N 199 
G  N1     N N N 200 
G  C2     C N N 201 
G  N2     N N N 202 
G  N3     N N N 203 
G  C4     C Y N 204 
G  HOP3   H N N 205 
G  HOP2   H N N 206 
G  "H5'"  H N N 207 
G  "H5''" H N N 208 
G  "H4'"  H N N 209 
G  "H3'"  H N N 210 
G  "HO3'" H N N 211 
G  "H2'"  H N N 212 
G  "HO2'" H N N 213 
G  "H1'"  H N N 214 
G  H8     H N N 215 
G  H1     H N N 216 
G  H21    H N N 217 
G  H22    H N N 218 
U  OP3    O N N 219 
U  P      P N N 220 
U  OP1    O N N 221 
U  OP2    O N N 222 
U  "O5'"  O N N 223 
U  "C5'"  C N N 224 
U  "C4'"  C N R 225 
U  "O4'"  O N N 226 
U  "C3'"  C N S 227 
U  "O3'"  O N N 228 
U  "C2'"  C N R 229 
U  "O2'"  O N N 230 
U  "C1'"  C N R 231 
U  N1     N N N 232 
U  C2     C N N 233 
U  O2     O N N 234 
U  N3     N N N 235 
U  C4     C N N 236 
U  O4     O N N 237 
U  C5     C N N 238 
U  C6     C N N 239 
U  HOP3   H N N 240 
U  HOP2   H N N 241 
U  "H5'"  H N N 242 
U  "H5''" H N N 243 
U  "H4'"  H N N 244 
U  "H3'"  H N N 245 
U  "HO3'" H N N 246 
U  "H2'"  H N N 247 
U  "HO2'" H N N 248 
U  "H1'"  H N N 249 
U  H3     H N N 250 
U  H5     H N N 251 
U  H6     H N N 252 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A  OP3   P      sing N N 1   
A  OP3   HOP3   sing N N 2   
A  P     OP1    doub N N 3   
A  P     OP2    sing N N 4   
A  P     "O5'"  sing N N 5   
A  OP2   HOP2   sing N N 6   
A  "O5'" "C5'"  sing N N 7   
A  "C5'" "C4'"  sing N N 8   
A  "C5'" "H5'"  sing N N 9   
A  "C5'" "H5''" sing N N 10  
A  "C4'" "O4'"  sing N N 11  
A  "C4'" "C3'"  sing N N 12  
A  "C4'" "H4'"  sing N N 13  
A  "O4'" "C1'"  sing N N 14  
A  "C3'" "O3'"  sing N N 15  
A  "C3'" "C2'"  sing N N 16  
A  "C3'" "H3'"  sing N N 17  
A  "O3'" "HO3'" sing N N 18  
A  "C2'" "O2'"  sing N N 19  
A  "C2'" "C1'"  sing N N 20  
A  "C2'" "H2'"  sing N N 21  
A  "O2'" "HO2'" sing N N 22  
A  "C1'" N9     sing N N 23  
A  "C1'" "H1'"  sing N N 24  
A  N9    C8     sing Y N 25  
A  N9    C4     sing Y N 26  
A  C8    N7     doub Y N 27  
A  C8    H8     sing N N 28  
A  N7    C5     sing Y N 29  
A  C5    C6     sing Y N 30  
A  C5    C4     doub Y N 31  
A  C6    N6     sing N N 32  
A  C6    N1     doub Y N 33  
A  N6    H61    sing N N 34  
A  N6    H62    sing N N 35  
A  N1    C2     sing Y N 36  
A  C2    N3     doub Y N 37  
A  C2    H2     sing N N 38  
A  N3    C4     sing Y N 39  
DA OP3   P      sing N N 40  
DA OP3   HOP3   sing N N 41  
DA P     OP1    doub N N 42  
DA P     OP2    sing N N 43  
DA P     "O5'"  sing N N 44  
DA OP2   HOP2   sing N N 45  
DA "O5'" "C5'"  sing N N 46  
DA "C5'" "C4'"  sing N N 47  
DA "C5'" "H5'"  sing N N 48  
DA "C5'" "H5''" sing N N 49  
DA "C4'" "O4'"  sing N N 50  
DA "C4'" "C3'"  sing N N 51  
DA "C4'" "H4'"  sing N N 52  
DA "O4'" "C1'"  sing N N 53  
DA "C3'" "O3'"  sing N N 54  
DA "C3'" "C2'"  sing N N 55  
DA "C3'" "H3'"  sing N N 56  
DA "O3'" "HO3'" sing N N 57  
DA "C2'" "C1'"  sing N N 58  
DA "C2'" "H2'"  sing N N 59  
DA "C2'" "H2''" sing N N 60  
DA "C1'" N9     sing N N 61  
DA "C1'" "H1'"  sing N N 62  
DA N9    C8     sing Y N 63  
DA N9    C4     sing Y N 64  
DA C8    N7     doub Y N 65  
DA C8    H8     sing N N 66  
DA N7    C5     sing Y N 67  
DA C5    C6     sing Y N 68  
DA C5    C4     doub Y N 69  
DA C6    N6     sing N N 70  
DA C6    N1     doub Y N 71  
DA N6    H61    sing N N 72  
DA N6    H62    sing N N 73  
DA N1    C2     sing Y N 74  
DA C2    N3     doub Y N 75  
DA C2    H2     sing N N 76  
DA N3    C4     sing Y N 77  
DC OP3   P      sing N N 78  
DC OP3   HOP3   sing N N 79  
DC P     OP1    doub N N 80  
DC P     OP2    sing N N 81  
DC P     "O5'"  sing N N 82  
DC OP2   HOP2   sing N N 83  
DC "O5'" "C5'"  sing N N 84  
DC "C5'" "C4'"  sing N N 85  
DC "C5'" "H5'"  sing N N 86  
DC "C5'" "H5''" sing N N 87  
DC "C4'" "O4'"  sing N N 88  
DC "C4'" "C3'"  sing N N 89  
DC "C4'" "H4'"  sing N N 90  
DC "O4'" "C1'"  sing N N 91  
DC "C3'" "O3'"  sing N N 92  
DC "C3'" "C2'"  sing N N 93  
DC "C3'" "H3'"  sing N N 94  
DC "O3'" "HO3'" sing N N 95  
DC "C2'" "C1'"  sing N N 96  
DC "C2'" "H2'"  sing N N 97  
DC "C2'" "H2''" sing N N 98  
DC "C1'" N1     sing N N 99  
DC "C1'" "H1'"  sing N N 100 
DC N1    C2     sing N N 101 
DC N1    C6     sing N N 102 
DC C2    O2     doub N N 103 
DC C2    N3     sing N N 104 
DC N3    C4     doub N N 105 
DC C4    N4     sing N N 106 
DC C4    C5     sing N N 107 
DC N4    H41    sing N N 108 
DC N4    H42    sing N N 109 
DC C5    C6     doub N N 110 
DC C5    H5     sing N N 111 
DC C6    H6     sing N N 112 
DG OP3   P      sing N N 113 
DG OP3   HOP3   sing N N 114 
DG P     OP1    doub N N 115 
DG P     OP2    sing N N 116 
DG P     "O5'"  sing N N 117 
DG OP2   HOP2   sing N N 118 
DG "O5'" "C5'"  sing N N 119 
DG "C5'" "C4'"  sing N N 120 
DG "C5'" "H5'"  sing N N 121 
DG "C5'" "H5''" sing N N 122 
DG "C4'" "O4'"  sing N N 123 
DG "C4'" "C3'"  sing N N 124 
DG "C4'" "H4'"  sing N N 125 
DG "O4'" "C1'"  sing N N 126 
DG "C3'" "O3'"  sing N N 127 
DG "C3'" "C2'"  sing N N 128 
DG "C3'" "H3'"  sing N N 129 
DG "O3'" "HO3'" sing N N 130 
DG "C2'" "C1'"  sing N N 131 
DG "C2'" "H2'"  sing N N 132 
DG "C2'" "H2''" sing N N 133 
DG "C1'" N9     sing N N 134 
DG "C1'" "H1'"  sing N N 135 
DG N9    C8     sing Y N 136 
DG N9    C4     sing Y N 137 
DG C8    N7     doub Y N 138 
DG C8    H8     sing N N 139 
DG N7    C5     sing Y N 140 
DG C5    C6     sing N N 141 
DG C5    C4     doub Y N 142 
DG C6    O6     doub N N 143 
DG C6    N1     sing N N 144 
DG N1    C2     sing N N 145 
DG N1    H1     sing N N 146 
DG C2    N2     sing N N 147 
DG C2    N3     doub N N 148 
DG N2    H21    sing N N 149 
DG N2    H22    sing N N 150 
DG N3    C4     sing N N 151 
DT OP3   P      sing N N 152 
DT OP3   HOP3   sing N N 153 
DT P     OP1    doub N N 154 
DT P     OP2    sing N N 155 
DT P     "O5'"  sing N N 156 
DT OP2   HOP2   sing N N 157 
DT "O5'" "C5'"  sing N N 158 
DT "C5'" "C4'"  sing N N 159 
DT "C5'" "H5'"  sing N N 160 
DT "C5'" "H5''" sing N N 161 
DT "C4'" "O4'"  sing N N 162 
DT "C4'" "C3'"  sing N N 163 
DT "C4'" "H4'"  sing N N 164 
DT "O4'" "C1'"  sing N N 165 
DT "C3'" "O3'"  sing N N 166 
DT "C3'" "C2'"  sing N N 167 
DT "C3'" "H3'"  sing N N 168 
DT "O3'" "HO3'" sing N N 169 
DT "C2'" "C1'"  sing N N 170 
DT "C2'" "H2'"  sing N N 171 
DT "C2'" "H2''" sing N N 172 
DT "C1'" N1     sing N N 173 
DT "C1'" "H1'"  sing N N 174 
DT N1    C2     sing N N 175 
DT N1    C6     sing N N 176 
DT C2    O2     doub N N 177 
DT C2    N3     sing N N 178 
DT N3    C4     sing N N 179 
DT N3    H3     sing N N 180 
DT C4    O4     doub N N 181 
DT C4    C5     sing N N 182 
DT C5    C7     sing N N 183 
DT C5    C6     doub N N 184 
DT C7    H71    sing N N 185 
DT C7    H72    sing N N 186 
DT C7    H73    sing N N 187 
DT C6    H6     sing N N 188 
G  OP3   P      sing N N 189 
G  OP3   HOP3   sing N N 190 
G  P     OP1    doub N N 191 
G  P     OP2    sing N N 192 
G  P     "O5'"  sing N N 193 
G  OP2   HOP2   sing N N 194 
G  "O5'" "C5'"  sing N N 195 
G  "C5'" "C4'"  sing N N 196 
G  "C5'" "H5'"  sing N N 197 
G  "C5'" "H5''" sing N N 198 
G  "C4'" "O4'"  sing N N 199 
G  "C4'" "C3'"  sing N N 200 
G  "C4'" "H4'"  sing N N 201 
G  "O4'" "C1'"  sing N N 202 
G  "C3'" "O3'"  sing N N 203 
G  "C3'" "C2'"  sing N N 204 
G  "C3'" "H3'"  sing N N 205 
G  "O3'" "HO3'" sing N N 206 
G  "C2'" "O2'"  sing N N 207 
G  "C2'" "C1'"  sing N N 208 
G  "C2'" "H2'"  sing N N 209 
G  "O2'" "HO2'" sing N N 210 
G  "C1'" N9     sing N N 211 
G  "C1'" "H1'"  sing N N 212 
G  N9    C8     sing Y N 213 
G  N9    C4     sing Y N 214 
G  C8    N7     doub Y N 215 
G  C8    H8     sing N N 216 
G  N7    C5     sing Y N 217 
G  C5    C6     sing N N 218 
G  C5    C4     doub Y N 219 
G  C6    O6     doub N N 220 
G  C6    N1     sing N N 221 
G  N1    C2     sing N N 222 
G  N1    H1     sing N N 223 
G  C2    N2     sing N N 224 
G  C2    N3     doub N N 225 
G  N2    H21    sing N N 226 
G  N2    H22    sing N N 227 
G  N3    C4     sing N N 228 
U  OP3   P      sing N N 229 
U  OP3   HOP3   sing N N 230 
U  P     OP1    doub N N 231 
U  P     OP2    sing N N 232 
U  P     "O5'"  sing N N 233 
U  OP2   HOP2   sing N N 234 
U  "O5'" "C5'"  sing N N 235 
U  "C5'" "C4'"  sing N N 236 
U  "C5'" "H5'"  sing N N 237 
U  "C5'" "H5''" sing N N 238 
U  "C4'" "O4'"  sing N N 239 
U  "C4'" "C3'"  sing N N 240 
U  "C4'" "H4'"  sing N N 241 
U  "O4'" "C1'"  sing N N 242 
U  "C3'" "O3'"  sing N N 243 
U  "C3'" "C2'"  sing N N 244 
U  "C3'" "H3'"  sing N N 245 
U  "O3'" "HO3'" sing N N 246 
U  "C2'" "O2'"  sing N N 247 
U  "C2'" "C1'"  sing N N 248 
U  "C2'" "H2'"  sing N N 249 
U  "O2'" "HO2'" sing N N 250 
U  "C1'" N1     sing N N 251 
U  "C1'" "H1'"  sing N N 252 
U  N1    C2     sing N N 253 
U  N1    C6     sing N N 254 
U  C2    O2     doub N N 255 
U  C2    N3     sing N N 256 
U  N3    C4     sing N N 257 
U  N3    H3     sing N N 258 
U  C4    O4     doub N N 259 
U  C4    C5     sing N N 260 
U  C5    C6     doub N N 261 
U  C5    H5     sing N N 262 
U  C6    H6     sing N N 263 
# 
_ndb_struct_conf_na.entry_id   1DHH 
_ndb_struct_conf_na.feature    'double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DG 1 1_555 B DC 9 1_555 -0.530 -0.306 -0.185 -2.266 0.102   1.153  1 A_DG1:DC18_B A 1 ? B 18 ? 19 1 
1 A DG 2 1_555 B DC 8 1_555 -0.694 -0.321 -0.076 -3.103 -4.593  5.848  2 A_DG2:DC17_B A 2 ? B 17 ? 19 1 
1 A A  3 1_555 B DT 7 1_555 -0.342 -0.370 0.180  2.053  -8.970  4.670  3 A_A3:DT16_B  A 3 ? B 16 ? 20 1 
1 A G  4 1_555 B DC 6 1_555 -0.225 -0.303 0.086  4.345  -10.176 1.710  4 A_G4:DC15_B  A 4 ? B 15 ? 19 1 
1 A A  5 1_555 B DT 5 1_555 -0.412 -0.242 0.115  -3.696 -4.093  -5.726 5 A_A5:DT14_B  A 5 ? B 14 ? 20 1 
1 A U  6 1_555 B DA 4 1_555 0.165  -0.201 -0.193 8.703  -7.978  10.088 6 A_U6:DA13_B  A 6 ? B 13 ? 20 1 
1 A DG 7 1_555 B DC 3 1_555 0.161  -0.310 -0.290 -7.184 -1.884  0.778  7 A_DG7:DC12_B A 7 ? B 12 ? 19 1 
1 A DA 8 1_555 B DT 2 1_555 -0.433 -0.380 0.018  0.601  -1.969  -0.505 8 A_DA8:DT11_B A 8 ? B 11 ? 20 1 
1 A DC 9 1_555 B DG 1 1_555 0.615  -0.430 -0.044 2.282  -0.853  -1.240 9 A_DC9:DG10_B A 9 ? B 10 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DG 1 1_555 B DC 9 1_555 A DG 2 1_555 B DC 8 1_555 0.069  -1.396 3.332 -0.232 -0.339 28.939 -2.716 -0.190 3.347 -0.678 0.464  
28.942 1 AA_DG1DG2:DC17DC18_BB A 1 ? B 18 ? A 2 ? B 17 ? 
1 A DG 2 1_555 B DC 8 1_555 A A  3 1_555 B DT 7 1_555 -0.855 0.146  3.609 -0.188 1.363  37.390 0.030  1.305  3.616 2.125  0.293  
37.415 2 AA_DG2A3:DT16DC17_BB  A 2 ? B 17 ? A 3 ? B 16 ? 
1 A A  3 1_555 B DT 7 1_555 A G  4 1_555 B DC 6 1_555 -0.562 0.707  3.424 1.801  16.843 33.415 -1.340 1.139  3.357 27.227 -2.911 
37.354 3 AA_A3G4:DC15DT16_BB   A 3 ? B 16 ? A 4 ? B 15 ? 
1 A G  4 1_555 B DC 6 1_555 A A  5 1_555 B DT 5 1_555 -1.226 -0.124 3.484 -5.761 15.473 28.785 -3.081 1.085  3.193 28.370 10.562 
33.096 4 AA_G4A5:DT14DC15_BB   A 4 ? B 15 ? A 5 ? B 14 ? 
1 A A  5 1_555 B DT 5 1_555 A U  6 1_555 B DA 4 1_555 1.136  -0.056 2.936 5.184  1.527  33.497 -0.322 -1.179 3.067 2.628  -8.923 
33.918 5 AA_A5U6:DA13DT14_BB   A 5 ? B 14 ? A 6 ? B 13 ? 
1 A U  6 1_555 B DA 4 1_555 A DG 7 1_555 B DC 3 1_555 -0.446 0.949  3.827 0.601  35.887 38.689 -2.052 0.558  3.497 44.349 -0.743 
52.301 6 AA_U6DG7:DC12DA13_BB  A 6 ? B 13 ? A 7 ? B 12 ? 
1 A DG 7 1_555 B DC 3 1_555 A DA 8 1_555 B DT 2 1_555 -0.319 -1.106 3.234 2.466  1.650  27.467 -2.708 1.252  3.123 3.463  -5.174 
27.623 7 AA_DG7DA8:DT11DC12_BB A 7 ? B 12 ? A 8 ? B 11 ? 
1 A DA 8 1_555 B DT 2 1_555 A DC 9 1_555 B DG 1 1_555 0.419  -1.099 3.272 -1.830 2.838  36.087 -2.159 -0.927 3.155 4.569  2.946  
36.240 8 AA_DA8DC9:DG10DT11_BB A 8 ? B 11 ? A 9 ? B 10 ? 
# 
_atom_sites.entry_id                    1DHH 
_atom_sites.fract_transf_matrix[1][1]   1.000000 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   1.000000 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   1.000000 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
N 
O 
P 
# 
loop_