HEADER CHAPERONE 07-DEC-99 1DKD TITLE CRYSTAL STRUCTURE OF A GROEL (APICAL DOMAIN) AND A DODECAMERIC PEPTIDE TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROEL; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: APICAL DOMAIN; COMPND 5 SYNONYM: CHAPERONE HSP60; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 12-MER PEPTIDE; COMPND 9 CHAIN: E, F, G, H; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: SELECTED FROM PHAGE DISPLAY PEPTIDE LIBRARY SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED AND WAS SOURCE 10 SELECTED FROM PHAGE DISPLAY PEPTIDE LIBRARY. KEYWDS MOLECULAR CHAPERON, HSP60, PROTEIN FOLDING, PEPTIDE SELECTION, PHAGE KEYWDS 2 DISPLAY, PEPTIDE BINDING GROOVE FORMED BY PAIRED HELICES SUBSTRATE KEYWDS 3 PEPTIDE IN BETA-SHEET, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR L.CHEN,P.B.SIGLER REVDAT 4 07-FEB-24 1DKD 1 REMARK REVDAT 3 31-JAN-18 1DKD 1 REMARK REVDAT 2 24-FEB-09 1DKD 1 VERSN REVDAT 1 12-JAN-00 1DKD 0 JRNL AUTH L.CHEN,P.B.SIGLER JRNL TITL THE CRYSTAL STRUCTURE OF A GROEL/PEPTIDE COMPLEX: PLASTICITY JRNL TITL 2 AS A BASIS FOR SUBSTRATE DIVERSITY. JRNL REF CELL(CAMBRIDGE,MASS.) V. 99 757 1999 JRNL REFN ISSN 0092-8674 JRNL PMID 10619429 JRNL DOI 10.1016/S0092-8674(00)81673-6 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 35897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1783 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4722 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.320 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-99. REMARK 100 THE DEPOSITION ID IS D_1000010156. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-98 REMARK 200 TEMPERATURE (KELVIN) : 80.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.923 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35897 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.30300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4K, MGCL2, TRISCL, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 18K, TEMPERATURE 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 67.33400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 32.91811 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -67.33400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 119.11909 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE PEPTIDE ADOPTS A TYPICAL BETA-TURN; PAIRED ALPHA REMARK 400 HELICES H AND I, AND THE GROOVE BETWEEN THEM CONSTITUTE REMARK 400 THE BINDING SITE. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER E 601 REMARK 465 SER F 601 REMARK 465 SER H 601 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 GLU A 304 CG CD OE1 OE2 REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 GLU A 315 CG CD OE1 OE2 REMARK 470 LYS A 321 CG CD CE NZ REMARK 470 GLU B 191 CG CD OE1 OE2 REMARK 470 LYS B 242 CG CD CE NZ REMARK 470 GLU B 304 CG CD OE1 OE2 REMARK 470 GLU B 315 CG CD OE1 OE2 REMARK 470 LYS B 321 CG CD CE NZ REMARK 470 LYS C 242 CG CD CE NZ REMARK 470 GLU C 304 CG CD OE1 OE2 REMARK 470 LYS C 311 CG CD CE NZ REMARK 470 GLU C 315 CG CD OE1 OE2 REMARK 470 LYS C 321 CG CD CE NZ REMARK 470 GLU D 191 CG CD OE1 OE2 REMARK 470 LYS D 242 CG CD CE NZ REMARK 470 GLU D 304 CG CD OE1 OE2 REMARK 470 GLU D 315 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 326 -165.85 -127.41 REMARK 500 ASP A 334 75.90 41.11 REMARK 500 ASP B 334 76.68 52.26 REMARK 500 ASN C 326 -167.31 -128.09 REMARK 500 TRP G 602 111.95 58.29 REMARK 500 ASN D 326 -162.40 -127.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DK7 RELATED DB: PDB REMARK 900 1DK7 CONTAINS THE SAME PROTEIN WITHOUT THE PEPTIDE. DBREF 1DKD A 191 336 UNP P0A6F5 CH60_ECOLI 191 336 DBREF 1DKD B 191 336 UNP P0A6F5 CH60_ECOLI 191 336 DBREF 1DKD C 191 336 UNP P0A6F5 CH60_ECOLI 191 336 DBREF 1DKD D 191 336 UNP P0A6F5 CH60_ECOLI 191 336 DBREF 1DKD E 601 612 PDB 1DKD 1DKD 601 612 DBREF 1DKD F 601 612 PDB 1DKD 1DKD 601 612 DBREF 1DKD G 601 612 PDB 1DKD 1DKD 601 612 DBREF 1DKD H 601 612 PDB 1DKD 1DKD 601 612 SEQRES 1 A 146 GLU GLY MET GLN PHE ASP ARG GLY TYR LEU SER PRO TYR SEQRES 2 A 146 PHE ILE ASN LYS PRO GLU THR GLY ALA VAL GLU LEU GLU SEQRES 3 A 146 SER PRO PHE ILE LEU LEU ALA ASP LYS LYS ILE SER ASN SEQRES 4 A 146 ILE ARG GLU MET LEU PRO VAL LEU GLU ALA VAL ALA LYS SEQRES 5 A 146 ALA GLY LYS PRO LEU LEU ILE ILE ALA GLU ASP VAL GLU SEQRES 6 A 146 GLY GLU ALA LEU ALA THR LEU VAL VAL ASN THR MET ARG SEQRES 7 A 146 GLY ILE VAL LYS VAL ALA ALA VAL LYS ALA PRO GLY PHE SEQRES 8 A 146 GLY ASP ARG ARG LYS ALA MET LEU GLN ASP ILE ALA THR SEQRES 9 A 146 LEU THR GLY GLY THR VAL ILE SER GLU GLU ILE GLY MET SEQRES 10 A 146 GLU LEU GLU LYS ALA THR LEU GLU ASP LEU GLY GLN ALA SEQRES 11 A 146 LYS ARG VAL VAL ILE ASN LYS ASP THR THR THR ILE ILE SEQRES 12 A 146 ASP GLY VAL SEQRES 1 E 12 SER TRP MET THR THR PRO TRP GLY PHE LEU HIS PRO SEQRES 1 B 146 GLU GLY MET GLN PHE ASP ARG GLY TYR LEU SER PRO TYR SEQRES 2 B 146 PHE ILE ASN LYS PRO GLU THR GLY ALA VAL GLU LEU GLU SEQRES 3 B 146 SER PRO PHE ILE LEU LEU ALA ASP LYS LYS ILE SER ASN SEQRES 4 B 146 ILE ARG GLU MET LEU PRO VAL LEU GLU ALA VAL ALA LYS SEQRES 5 B 146 ALA GLY LYS PRO LEU LEU ILE ILE ALA GLU ASP VAL GLU SEQRES 6 B 146 GLY GLU ALA LEU ALA THR LEU VAL VAL ASN THR MET ARG SEQRES 7 B 146 GLY ILE VAL LYS VAL ALA ALA VAL LYS ALA PRO GLY PHE SEQRES 8 B 146 GLY ASP ARG ARG LYS ALA MET LEU GLN ASP ILE ALA THR SEQRES 9 B 146 LEU THR GLY GLY THR VAL ILE SER GLU GLU ILE GLY MET SEQRES 10 B 146 GLU LEU GLU LYS ALA THR LEU GLU ASP LEU GLY GLN ALA SEQRES 11 B 146 LYS ARG VAL VAL ILE ASN LYS ASP THR THR THR ILE ILE SEQRES 12 B 146 ASP GLY VAL SEQRES 1 F 12 SER TRP MET THR THR PRO TRP GLY PHE LEU HIS PRO SEQRES 1 C 146 GLU GLY MET GLN PHE ASP ARG GLY TYR LEU SER PRO TYR SEQRES 2 C 146 PHE ILE ASN LYS PRO GLU THR GLY ALA VAL GLU LEU GLU SEQRES 3 C 146 SER PRO PHE ILE LEU LEU ALA ASP LYS LYS ILE SER ASN SEQRES 4 C 146 ILE ARG GLU MET LEU PRO VAL LEU GLU ALA VAL ALA LYS SEQRES 5 C 146 ALA GLY LYS PRO LEU LEU ILE ILE ALA GLU ASP VAL GLU SEQRES 6 C 146 GLY GLU ALA LEU ALA THR LEU VAL VAL ASN THR MET ARG SEQRES 7 C 146 GLY ILE VAL LYS VAL ALA ALA VAL LYS ALA PRO GLY PHE SEQRES 8 C 146 GLY ASP ARG ARG LYS ALA MET LEU GLN ASP ILE ALA THR SEQRES 9 C 146 LEU THR GLY GLY THR VAL ILE SER GLU GLU ILE GLY MET SEQRES 10 C 146 GLU LEU GLU LYS ALA THR LEU GLU ASP LEU GLY GLN ALA SEQRES 11 C 146 LYS ARG VAL VAL ILE ASN LYS ASP THR THR THR ILE ILE SEQRES 12 C 146 ASP GLY VAL SEQRES 1 G 12 SER TRP MET THR THR PRO TRP GLY PHE LEU HIS PRO SEQRES 1 D 146 GLU GLY MET GLN PHE ASP ARG GLY TYR LEU SER PRO TYR SEQRES 2 D 146 PHE ILE ASN LYS PRO GLU THR GLY ALA VAL GLU LEU GLU SEQRES 3 D 146 SER PRO PHE ILE LEU LEU ALA ASP LYS LYS ILE SER ASN SEQRES 4 D 146 ILE ARG GLU MET LEU PRO VAL LEU GLU ALA VAL ALA LYS SEQRES 5 D 146 ALA GLY LYS PRO LEU LEU ILE ILE ALA GLU ASP VAL GLU SEQRES 6 D 146 GLY GLU ALA LEU ALA THR LEU VAL VAL ASN THR MET ARG SEQRES 7 D 146 GLY ILE VAL LYS VAL ALA ALA VAL LYS ALA PRO GLY PHE SEQRES 8 D 146 GLY ASP ARG ARG LYS ALA MET LEU GLN ASP ILE ALA THR SEQRES 9 D 146 LEU THR GLY GLY THR VAL ILE SER GLU GLU ILE GLY MET SEQRES 10 D 146 GLU LEU GLU LYS ALA THR LEU GLU ASP LEU GLY GLN ALA SEQRES 11 D 146 LYS ARG VAL VAL ILE ASN LYS ASP THR THR THR ILE ILE SEQRES 12 D 146 ASP GLY VAL SEQRES 1 H 12 SER TRP MET THR THR PRO TRP GLY PHE LEU HIS PRO FORMUL 9 HOH *96(H2 O) HELIX 1 1 SER A 201 ILE A 205 5 5 HELIX 2 2 ASN A 229 GLU A 232 5 4 HELIX 3 3 MET A 233 GLY A 244 1 12 HELIX 4 4 GLU A 255 ARG A 268 1 14 HELIX 5 5 PHE A 281 GLY A 297 1 17 HELIX 6 6 GLU A 308 ALA A 312 5 5 HELIX 7 7 THR A 313 LEU A 317 5 5 HELIX 8 8 SER B 201 ILE B 205 5 5 HELIX 9 9 ASN B 229 GLU B 232 5 4 HELIX 10 10 MET B 233 GLY B 244 1 12 HELIX 11 11 GLU B 255 ARG B 268 1 14 HELIX 12 12 PHE B 281 GLY B 297 1 17 HELIX 13 13 SER B 302 GLY B 306 5 5 HELIX 14 14 GLU B 308 ALA B 312 5 5 HELIX 15 15 THR B 313 LEU B 317 5 5 HELIX 16 16 SER C 201 ILE C 205 5 5 HELIX 17 17 ASN C 229 GLU C 232 5 4 HELIX 18 18 MET C 233 GLY C 244 1 12 HELIX 19 19 GLU C 255 ARG C 268 1 14 HELIX 20 20 PHE C 281 GLY C 297 1 17 HELIX 21 21 GLU C 308 ALA C 312 5 5 HELIX 22 22 THR C 313 LEU C 317 5 5 HELIX 23 23 SER D 201 ILE D 205 5 5 HELIX 24 24 ASN D 229 GLU D 232 5 4 HELIX 25 25 MET D 233 ALA D 243 1 11 HELIX 26 26 GLU D 255 ARG D 268 1 14 HELIX 27 27 PHE D 281 GLY D 297 1 17 HELIX 28 28 SER D 302 GLY D 306 5 5 HELIX 29 29 GLU D 308 ALA D 312 5 5 HELIX 30 30 THR D 313 LEU D 317 5 5 SHEET 1 A 4 MET A 193 PHE A 195 0 SHEET 2 A 4 THR A 330 GLY A 335 -1 N THR A 330 O PHE A 195 SHEET 3 A 4 GLY A 318 ILE A 325 -1 N LYS A 321 O ASP A 334 SHEET 4 A 4 VAL A 213 GLU A 216 -1 N VAL A 213 O ILE A 325 SHEET 1 A1 6 MET A 193 PHE A 195 0 SHEET 2 A1 6 THR A 330 GLY A 335 -1 N THR A 330 O PHE A 195 SHEET 3 A1 6 GLY A 318 ILE A 325 -1 N LYS A 321 O ASP A 334 SHEET 4 A1 6 PHE A 219 LEU A 222 -1 O ILE A 220 N GLY A 318 SHEET 5 A1 6 LEU A 247 ALA A 251 1 O LEU A 248 N LEU A 221 SHEET 6 A1 6 VAL A 273 LYS A 277 1 O ALA A 274 N ILE A 249 SHEET 1 B 2 LYS A 226 ILE A 227 0 SHEET 2 B 2 ASP A 253 VAL A 254 1 O ASP A 253 N ILE A 227 SHEET 1 C 2 MET E 603 THR E 604 0 SHEET 2 C 2 LEU E 610 HIS E 611 -1 O HIS E 611 N MET E 603 SHEET 1 D 5 VAL B 273 LYS B 277 0 SHEET 2 D 5 LEU B 247 VAL B 254 1 O LEU B 247 N ALA B 274 SHEET 3 D 5 PHE B 219 ILE B 227 1 O PHE B 219 N LEU B 248 SHEET 4 D 5 GLY B 318 ILE B 325 -1 N GLY B 318 O ILE B 220 SHEET 5 D 5 VAL B 213 GLU B 216 -1 N VAL B 213 O ILE B 325 SHEET 1 D1 6 VAL B 273 LYS B 277 0 SHEET 2 D1 6 LEU B 247 VAL B 254 1 O LEU B 247 N ALA B 274 SHEET 3 D1 6 PHE B 219 ILE B 227 1 O PHE B 219 N LEU B 248 SHEET 4 D1 6 GLY B 318 ILE B 325 -1 N GLY B 318 O ILE B 220 SHEET 5 D1 6 THR B 330 GLY B 335 -1 O THR B 331 N VAL B 324 SHEET 6 D1 6 GLY B 192 PHE B 195 -1 O MET B 193 N ILE B 332 SHEET 1 E 2 MET F 603 THR F 604 0 SHEET 2 E 2 LEU F 610 HIS F 611 -1 O HIS F 611 N MET F 603 SHEET 1 F 5 VAL C 273 LYS C 277 0 SHEET 2 F 5 LEU C 247 VAL C 254 1 O LEU C 247 N ALA C 274 SHEET 3 F 5 PHE C 219 ILE C 227 1 O PHE C 219 N LEU C 248 SHEET 4 F 5 GLY C 318 ILE C 325 -1 N GLY C 318 O ILE C 220 SHEET 5 F 5 VAL C 213 GLU C 216 -1 N VAL C 213 O ILE C 325 SHEET 1 F1 6 VAL C 273 LYS C 277 0 SHEET 2 F1 6 LEU C 247 VAL C 254 1 O LEU C 247 N ALA C 274 SHEET 3 F1 6 PHE C 219 ILE C 227 1 O PHE C 219 N LEU C 248 SHEET 4 F1 6 GLY C 318 ILE C 325 -1 N GLY C 318 O ILE C 220 SHEET 5 F1 6 THR C 330 GLY C 335 -1 N THR C 331 O VAL C 324 SHEET 6 F1 6 MET C 193 PHE C 195 -1 O MET C 193 N ILE C 332 SHEET 1 G 2 MET G 603 THR G 604 0 SHEET 2 G 2 LEU G 610 HIS G 611 -1 N HIS G 611 O MET G 603 SHEET 1 H 4 MET D 193 PHE D 195 0 SHEET 2 H 4 THR D 330 GLY D 335 -1 N THR D 330 O PHE D 195 SHEET 3 H 4 GLY D 318 ILE D 325 -1 N LYS D 321 O ILE D 333 SHEET 4 H 4 VAL D 213 GLU D 216 -1 N VAL D 213 O ILE D 325 SHEET 1 H1 6 MET D 193 PHE D 195 0 SHEET 2 H1 6 THR D 330 GLY D 335 -1 N THR D 330 O PHE D 195 SHEET 3 H1 6 GLY D 318 ILE D 325 -1 N LYS D 321 O ILE D 333 SHEET 4 H1 6 PHE D 219 LEU D 222 -1 O ILE D 220 N GLY D 318 SHEET 5 H1 6 LEU D 247 ALA D 251 1 O LEU D 248 N LEU D 221 SHEET 6 H1 6 VAL D 273 LYS D 277 1 O ALA D 274 N ILE D 249 SHEET 1 I 2 LYS D 226 ILE D 227 0 SHEET 2 I 2 ASP D 253 VAL D 254 1 O ASP D 253 N ILE D 227 SHEET 1 J 2 MET H 603 THR H 604 0 SHEET 2 J 2 LEU H 610 HIS H 611 -1 O HIS H 611 N MET H 603 CRYST1 42.042 134.668 59.734 90.00 94.38 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023786 0.000000 0.001822 0.00000 SCALE2 0.000000 0.007426 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016790 0.00000