HEADER OXYGEN STORAGE/TRANSPORT 07-DEC-99 1DKE TITLE NI BETA HEME HUMAN HEMOGLOBIN CAVEAT 1DKE THERE ARE CHIRALITY ERRORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN: ALPHA CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: HEMOGLOBIN: BETA CHAIN; COMPND 6 CHAIN: B, D; COMPND 7 OTHER_DETAILS: BETA HEME CONTAINS NI+2 ION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606 KEYWDS OXYGEN TRANSPORT, OXYGEN STORAGE-TRANSPORT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.BRUNO,S.BETTATTI,A.MOZZARELLI,M.BOLOGNESI,D.DERIU,C.ROSANO, AUTHOR 2 A.TSUNESHIGE,T.YONETANI,E.R.HENRY REVDAT 6 07-FEB-24 1DKE 1 REMARK LINK REVDAT 5 31-JAN-18 1DKE 1 REMARK REVDAT 4 04-OCT-17 1DKE 1 REMARK REVDAT 3 24-FEB-09 1DKE 1 VERSN REVDAT 2 01-APR-03 1DKE 1 JRNL REVDAT 1 23-MAY-00 1DKE 0 JRNL AUTH S.BRUNO,S.BETTATI,M.MANFREDINI,A.MOZZARELLI,M.BOLOGNESI, JRNL AUTH 2 D.DERIU,C.ROSANO,A.TSUNESHIGE,T.YONETANI,E.R.HENRY JRNL TITL OXYGEN BINDING BY ALPHA(FE2+)2BETA(NI2+)2 HEMOGLOBIN JRNL TITL 2 CRYSTALS. JRNL REF PROTEIN SCI. V. 9 683 2000 JRNL REFN ISSN 0961-8368 JRNL PMID 10794410 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 18821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 941 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4380 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 177 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.018 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.039 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DKE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-99. REMARK 100 THE DEPOSITION ID IS D_1000010157. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (AGROVATA, ROTAVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32068 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 22.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.15900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24 MG/ML PROTEIN 21% PEG 1000 10MM REMARK 280 POTASSIUM PHOSPHATE, 1MM IHP, 30MM SODIUM DITHIONITE, PH 7, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.70000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 VAL B 1 REMARK 475 VAL D 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU B 3 CG CD1 CD2 REMARK 480 LYS B 65 CD CE NZ REMARK 480 LEU B 78 CD1 REMARK 480 LYS B 120 CG CD CE NZ REMARK 480 LYS B 144 CD REMARK 480 HIS C 45 CB CG ND1 CD2 CE1 NE2 REMARK 480 LYS C 56 CB CG CD CE NZ REMARK 480 HIS D 2 CB CG ND1 CD2 CE1 NE2 REMARK 480 GLU D 43 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL D 1 N HIS D 2 1.39 REMARK 500 NZ LYS D 8 OD2 ASP D 79 2.01 REMARK 500 NZ LYS A 11 O HOH A 168 2.02 REMARK 500 O HOH D 148 O HOH D 186 2.10 REMARK 500 O HOH B 414 O HOH B 451 2.10 REMARK 500 O HOH B 436 O HOH B 460 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU B 3 CB LEU B 3 CG 0.302 REMARK 500 LYS B 144 CG LYS B 144 CD 0.225 REMARK 500 LYS B 144 CD LYS B 144 CE -0.219 REMARK 500 VAL D 1 C HIS D 2 N 0.204 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 23 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 ASP A 75 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 75 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 LEU A 83 CB - CG - CD1 ANGL. DEV. = 10.3 DEGREES REMARK 500 SER A 84 N - CA - CB ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG A 92 CD - NE - CZ ANGL. DEV. = 19.2 DEGREES REMARK 500 ARG A 92 NE - CZ - NH1 ANGL. DEV. = -5.7 DEGREES REMARK 500 CYS A 104 CA - CB - SG ANGL. DEV. = 11.6 DEGREES REMARK 500 LEU A 106 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 ALA A 110 CB - CA - C ANGL. DEV. = -9.6 DEGREES REMARK 500 GLU A 116 OE1 - CD - OE2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ALA A 123 CB - CA - C ANGL. DEV. = -9.8 DEGREES REMARK 500 TYR A 140 CB - CG - CD2 ANGL. DEV. = 3.7 DEGREES REMARK 500 TYR A 140 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 141 CA - C - O ANGL. DEV. = -19.5 DEGREES REMARK 500 LEU B 3 CA - CB - CG ANGL. DEV. = -18.2 DEGREES REMARK 500 LEU B 3 CB - CG - CD1 ANGL. DEV. = -13.1 DEGREES REMARK 500 THR B 4 N - CA - CB ANGL. DEV. = -13.6 DEGREES REMARK 500 GLU B 7 OE1 - CD - OE2 ANGL. DEV. = -10.0 DEGREES REMARK 500 ASP B 21 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 30 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 40 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 PHE B 45 CB - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 PHE B 45 CB - CG - CD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP B 47 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 LEU B 68 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 ASP B 73 CB - CG - OD1 ANGL. DEV. = 12.9 DEGREES REMARK 500 ASP B 73 CB - CG - OD2 ANGL. DEV. = -9.7 DEGREES REMARK 500 ASP B 94 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 GLU B 101 OE1 - CD - OE2 ANGL. DEV. = -9.9 DEGREES REMARK 500 ARG B 104 NE - CZ - NH1 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG B 104 NE - CZ - NH2 ANGL. DEV. = 5.6 DEGREES REMARK 500 GLU B 121 OE1 - CD - OE2 ANGL. DEV. = -8.4 DEGREES REMARK 500 VAL B 134 N - CA - CB ANGL. DEV. = 16.8 DEGREES REMARK 500 VAL B 134 CA - CB - CG1 ANGL. DEV. = 14.9 DEGREES REMARK 500 TYR B 145 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 HIS B 146 CA - C - O ANGL. DEV. = -14.3 DEGREES REMARK 500 VAL C 10 CG1 - CB - CG2 ANGL. DEV. = 10.0 DEGREES REMARK 500 VAL C 10 CA - CB - CG1 ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG C 31 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG C 31 NE - CZ - NH2 ANGL. DEV. = -9.3 DEGREES REMARK 500 ALA C 53 N - CA - CB ANGL. DEV. = 9.3 DEGREES REMARK 500 ASP C 64 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP C 74 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 SER C 81 N - CA - CB ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG C 92 NH1 - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG C 92 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 PHE C 117 CA - C - O ANGL. DEV. = 14.7 DEGREES REMARK 500 PHE C 117 O - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 THR C 118 N - CA - CB ANGL. DEV. = -13.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 74 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 75 41.93 -146.66 REMARK 500 LYS A 90 -71.51 -115.96 REMARK 500 HIS C 45 33.89 -99.84 REMARK 500 ASP C 75 71.01 -165.23 REMARK 500 LYS C 90 -74.49 -111.96 REMARK 500 LEU C 113 67.78 -119.50 REMARK 500 HIS D 2 -8.38 104.52 REMARK 500 ASN D 80 61.33 -159.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL D 1 HIS D 2 137.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL D 1 97.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 142 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 87 NE2 REMARK 620 2 HEM A 142 NA 94.9 REMARK 620 3 HEM A 142 NB 101.0 87.6 REMARK 620 4 HEM A 142 NC 106.2 158.8 86.5 REMARK 620 5 HEM A 142 ND 100.5 87.9 158.4 90.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 147 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 92 NE2 REMARK 620 2 HEM B 147 NA 84.6 REMARK 620 3 HEM B 147 NB 92.6 93.7 REMARK 620 4 HEM B 147 NC 110.9 164.1 88.9 REMARK 620 5 HEM B 147 ND 101.3 83.6 165.5 90.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 142 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 87 NE2 REMARK 620 2 HEM C 142 NA 102.7 REMARK 620 3 HEM C 142 NB 100.0 88.9 REMARK 620 4 HEM C 142 NC 101.7 155.6 85.7 REMARK 620 5 HEM C 142 ND 105.8 87.7 154.1 87.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 147 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 92 NE2 REMARK 620 2 HEM D 147 NA 85.6 REMARK 620 3 HEM D 147 NB 100.3 89.7 REMARK 620 4 HEM D 147 NC 105.9 168.5 87.9 REMARK 620 5 HEM D 147 ND 94.8 89.8 164.8 89.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM D 147 DBREF 1DKE A 1 141 UNP P69905 HBA_HUMAN 1 141 DBREF 1DKE B 1 146 UNP P68871 HBB_HUMAN 1 146 DBREF 1DKE C 1 141 UNP P69905 HBA_HUMAN 1 141 DBREF 1DKE D 1 146 UNP P68871 HBB_HUMAN 1 146 SEQRES 1 A 141 VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA ALA SEQRES 2 A 141 TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY ALA SEQRES 3 A 141 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR SEQRES 4 A 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 A 141 ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP ALA SEQRES 6 A 141 LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO ASN SEQRES 7 A 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 A 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS SEQRES 9 A 141 LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU PHE SEQRES 10 A 141 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 A 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 B 146 VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR ALA SEQRES 2 B 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU SEQRES 3 B 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 B 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO ASP SEQRES 5 B 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 B 146 LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS LEU SEQRES 7 B 146 ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU LEU SEQRES 8 B 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 B 146 LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS HIS SEQRES 10 B 146 PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA TYR SEQRES 11 B 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS SEQRES 12 B 146 LYS TYR HIS SEQRES 1 C 141 VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA ALA SEQRES 2 C 141 TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY ALA SEQRES 3 C 141 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR SEQRES 4 C 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 C 141 ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP ALA SEQRES 6 C 141 LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO ASN SEQRES 7 C 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 C 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS SEQRES 9 C 141 LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU PHE SEQRES 10 C 141 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 C 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 D 146 VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR ALA SEQRES 2 D 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU SEQRES 3 D 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 D 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO ASP SEQRES 5 D 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 D 146 LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS LEU SEQRES 7 D 146 ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU LEU SEQRES 8 D 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 D 146 LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS HIS SEQRES 10 D 146 PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA TYR SEQRES 11 D 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS SEQRES 12 D 146 LYS TYR HIS HET HEM A 142 43 HET SO4 B 402 5 HET HEM B 147 43 HET HEM C 142 43 HET HEM D 147 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETSYN HEM HEME FORMUL 5 HEM 4(C34 H32 FE N4 O4) FORMUL 6 SO4 O4 S 2- FORMUL 10 HOH *266(H2 O) HELIX 1 1 SER A 3 GLY A 18 1 16 HELIX 2 2 HIS A 20 PHE A 36 1 17 HELIX 3 3 PRO A 37 PHE A 43 5 7 HELIX 4 4 SER A 52 HIS A 72 1 21 HELIX 5 5 ASP A 75 LEU A 80 1 6 HELIX 6 6 LEU A 80 LYS A 90 1 11 HELIX 7 7 PRO A 95 LEU A 113 1 19 HELIX 8 8 THR A 118 THR A 137 1 20 HELIX 9 9 THR B 4 LYS B 17 1 14 HELIX 10 10 ASN B 19 TYR B 35 1 17 HELIX 11 11 PRO B 36 PHE B 42 5 7 HELIX 12 12 THR B 50 ASN B 57 1 8 HELIX 13 13 ASN B 57 ALA B 76 1 20 HELIX 14 14 ASN B 80 LYS B 95 1 16 HELIX 15 15 PRO B 100 GLY B 119 1 20 HELIX 16 16 LYS B 120 PHE B 122 5 3 HELIX 17 17 THR B 123 ALA B 142 1 20 HELIX 18 18 SER C 3 GLY C 18 1 16 HELIX 19 19 HIS C 20 PHE C 36 1 17 HELIX 20 20 PRO C 37 PHE C 43 5 7 HELIX 21 21 SER C 52 HIS C 72 1 21 HELIX 22 22 ASP C 75 LEU C 80 1 6 HELIX 23 23 LEU C 80 LYS C 90 1 11 HELIX 24 24 PRO C 95 LEU C 113 1 19 HELIX 25 25 THR C 118 SER C 138 1 21 HELIX 26 26 THR D 4 GLY D 16 1 13 HELIX 27 27 ASN D 19 TYR D 35 1 17 HELIX 28 28 PRO D 36 PHE D 42 5 7 HELIX 29 29 THR D 50 ASN D 57 1 8 HELIX 30 30 ASN D 57 LEU D 75 1 19 HELIX 31 31 ALA D 76 LEU D 78 5 3 HELIX 32 32 ASN D 80 LYS D 95 1 16 HELIX 33 33 PRO D 100 GLY D 119 1 20 HELIX 34 34 LYS D 120 PHE D 122 5 3 HELIX 35 35 THR D 123 HIS D 143 1 21 LINK NE2 HIS A 87 FE HEM A 142 1555 1555 2.14 LINK NE2 HIS B 92 FE HEM B 147 1555 1555 2.17 LINK NE2 HIS C 87 FE HEM C 142 1555 1555 2.23 LINK NE2 HIS D 92 FE HEM D 147 1555 1555 2.11 SITE 1 AC1 4 HIS B 116 HIS B 117 HOH B 426 LYS C 16 SITE 1 AC2 12 TYR A 42 PHE A 43 HIS A 58 LYS A 61 SITE 2 AC2 12 LEU A 86 HIS A 87 LEU A 91 VAL A 93 SITE 3 AC2 12 ASN A 97 PHE A 98 LEU A 136 HOH A 186 SITE 1 AC3 11 PHE B 41 HIS B 63 VAL B 67 LEU B 88 SITE 2 AC3 11 LEU B 91 HIS B 92 LEU B 96 ASN B 102 SITE 3 AC3 11 PHE B 103 LEU B 106 LEU B 141 SITE 1 AC4 15 TYR C 42 PHE C 43 PHE C 46 HIS C 58 SITE 2 AC4 15 LYS C 61 LEU C 86 HIS C 87 LEU C 91 SITE 3 AC4 15 VAL C 93 ASN C 97 PHE C 98 LEU C 136 SITE 4 AC4 15 HOH C 168 HOH C 181 HOH C 199 SITE 1 AC5 10 LYS C 90 PHE D 42 HIS D 63 VAL D 67 SITE 2 AC5 10 LEU D 91 HIS D 92 LEU D 96 ASN D 102 SITE 3 AC5 10 LEU D 141 HOH D 158 CRYST1 55.720 81.400 63.150 90.00 97.81 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017950 0.000000 0.002460 0.00000 SCALE2 0.000000 0.012290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015980 0.00000