HEADER HYDROLASE 08-DEC-99 1DL2 TITLE CRYSTAL STRUCTURE OF CLASS I ALPHA-1,2-MANNOSIDASE FROM SACCHAROMYCES TITLE 2 CEREVISIAE AT 1.54 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLASS I ALPHA-1,2-MANNOSIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 EC: 3.2.1.113; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PHIL-S1; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: YPH33 KEYWDS ALPHA-ALPHA HELIX BARREL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.VALLEE,F.LIPARI,P.YIP,A.HERSCOVICS,P.L.HOWELL REVDAT 9 13-NOV-24 1DL2 1 HETSYN REVDAT 8 29-JUL-20 1DL2 1 COMPND REMARK SEQADV HETNAM REVDAT 8 2 1 LINK SITE ATOM REVDAT 7 16-AUG-17 1DL2 1 SOURCE REMARK REVDAT 6 13-JUL-11 1DL2 1 VERSN REVDAT 5 24-FEB-09 1DL2 1 VERSN REVDAT 4 01-APR-03 1DL2 1 JRNL REVDAT 3 27-SEP-00 1DL2 1 SEQADV REVDAT 2 20-SEP-00 1DL2 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQADV SEQRES HET REVDAT 1 18-FEB-00 1DL2 0 JRNL AUTH F.VALLEE,F.LIPARI,P.YIP,B.SLENO,A.HERSCOVICS,P.L.HOWELL JRNL TITL CRYSTAL STRUCTURE OF A CLASS I ALPHA1,2-MANNOSIDASE INVOLVED JRNL TITL 2 IN N-GLYCAN PROCESSING AND ENDOPLASMIC RETICULUM QUALITY JRNL TITL 3 CONTROL. JRNL REF EMBO J. V. 19 581 2000 JRNL REFN ISSN 0261-4189 JRNL PMID 10675327 JRNL DOI 10.1093/EMBOJ/19.4.581 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH AND HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 494655.430 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 95655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9536 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 12132 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1339 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4117 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 143 REMARK 3 SOLVENT ATOMS : 393 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.48000 REMARK 3 B22 (A**2) : 3.48000 REMARK 3 B33 (A**2) : -6.96000 REMARK 3 B12 (A**2) : 0.94000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.23 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.790 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.380 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.040 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.430 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.560 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 65.19 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PA REMARK 3 PARAMETER FILE 2 : WATER_REP.PARA REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE.P REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : GLL.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : GLL.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DL2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-99. REMARK 100 THE DEPOSITION ID IS D_1000010173. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.975 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100985 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA CITRATE, 0.25 M AMMONIUM REMARK 280 ACETATE, 17% PEG2000 MME, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.07333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.14667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 102.14667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.07333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 410 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 408 CG1 CG2 CD1 REMARK 470 LYS A 409 CG CD CE NZ REMARK 470 LYS A 539 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 273 -3.21 75.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG B 1 REMARK 610 NAG C 1 REMARK 610 NAG A 700 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 901 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 525 O REMARK 620 2 THR A 525 OG1 73.1 REMARK 620 3 HOH A 951 O 151.4 79.6 REMARK 620 4 HOH A 954 O 123.7 110.5 73.7 REMARK 620 5 HOH A1019 O 85.8 92.0 86.9 146.5 REMARK 620 6 HOH A1088 O 88.9 161.5 117.6 82.4 82.8 REMARK 620 7 HOH A1190 O 60.1 69.3 117.4 69.0 144.3 105.3 REMARK 620 N 1 2 3 4 5 6 DBREF 1DL2 A 34 366 UNP P32906 MNS1_YEAST 34 366 DBREF 1DL2 A 372 549 UNP P32906 MNS1_YEAST 372 549 SEQADV 1DL2 A UNP P32906 LEU 367 DELETION SEQADV 1DL2 A UNP P32906 SER 368 DELETION SEQADV 1DL2 A UNP P32906 LEU 369 DELETION SEQADV 1DL2 A UNP P32906 GLU 370 DELETION SEQADV 1DL2 A UNP P32906 ARG 371 DELETION SEQRES 1 A 511 GLY ALA GLY GLU MET ARG ASP ARG ILE GLU SER MET PHE SEQRES 2 A 511 LEU GLU SER TRP ARG ASP TYR SER LYS HIS GLY TRP GLY SEQRES 3 A 511 TYR ASP VAL TYR GLY PRO ILE GLU HIS THR SER HIS ASN SEQRES 4 A 511 MET PRO ARG GLY ASN GLN PRO LEU GLY TRP ILE ILE VAL SEQRES 5 A 511 ASP SER VAL ASP THR LEU MET LEU MET TYR ASN SER SER SEQRES 6 A 511 THR LEU TYR LYS SER GLU PHE GLU ALA GLU ILE GLN ARG SEQRES 7 A 511 SER GLU HIS TRP ILE ASN ASP VAL LEU ASP PHE ASP ILE SEQRES 8 A 511 ASP ALA GLU VAL ASN VAL PHE GLU THR THR ILE ARG MET SEQRES 9 A 511 LEU GLY GLY LEU LEU SER ALA TYR HIS LEU SER ASP VAL SEQRES 10 A 511 LEU GLU VAL GLY ASN LYS THR VAL TYR LEU ASN LYS ALA SEQRES 11 A 511 ILE ASP LEU GLY ASP ARG LEU ALA LEU ALA PHE LEU SER SEQRES 12 A 511 THR GLN THR GLY ILE PRO TYR SER SER ILE ASN LEU HIS SEQRES 13 A 511 SER GLY GLN ALA VAL LYS ASN HIS ALA ASP GLY GLY ALA SEQRES 14 A 511 SER SER THR ALA GLU PHE THR THR LEU GLN MET GLU PHE SEQRES 15 A 511 LYS TYR LEU ALA TYR LEU THR GLY ASN ARG THR TYR TRP SEQRES 16 A 511 GLU LEU VAL GLU ARG VAL TYR GLU PRO LEU TYR LYS ASN SEQRES 17 A 511 ASN ASP LEU LEU ASN THR TYR ASP GLY LEU VAL PRO ILE SEQRES 18 A 511 TYR THR PHE PRO ASP THR GLY LYS PHE GLY ALA SER THR SEQRES 19 A 511 ILE ARG PHE GLY SER ARG GLY ASP SER PHE TYR GLU TYR SEQRES 20 A 511 LEU LEU LYS GLN TYR LEU LEU THR HIS GLU THR LEU TYR SEQRES 21 A 511 TYR ASP LEU TYR ARG LYS SER MET GLU GLY MET LYS LYS SEQRES 22 A 511 HIS LEU LEU ALA GLN SER LYS PRO SER SER LEU TRP TYR SEQRES 23 A 511 ILE GLY GLU ARG GLU GLN GLY LEU HIS GLY GLN LEU SER SEQRES 24 A 511 PRO LYS MET ASP HIS LEU VAL CYS PHE MET GLY GLY LEU SEQRES 25 A 511 LEU ALA SER GLY SER THR GLU GLY LEU SER ILE HIS GLU SEQRES 26 A 511 ALA ARG ARG ARG PRO PHE PHE SER LYS SER ASP TRP ASP SEQRES 27 A 511 LEU ALA LYS GLY ILE THR ASP THR CYS TYR GLN MET TYR SEQRES 28 A 511 LYS GLN SER SER SER GLY LEU ALA PRO GLU ILE VAL VAL SEQRES 29 A 511 PHE ASN ASP GLY ASN ILE LYS GLN ASP GLY TRP TRP ARG SEQRES 30 A 511 SER SER VAL GLY ASP PHE PHE VAL LYS PRO LEU ASP ARG SEQRES 31 A 511 HIS ASN LEU GLN ARG PRO GLU THR VAL GLU SER ILE MET SEQRES 32 A 511 PHE MET TYR HIS LEU SER HIS ASP HIS LYS TYR ARG GLU SEQRES 33 A 511 TRP GLY ALA GLU ILE ALA THR SER PHE PHE GLU ASN THR SEQRES 34 A 511 CYS VAL ASP CYS ASN ASP PRO LYS LEU ARG ARG PHE THR SEQRES 35 A 511 SER LEU SER ASP CYS ILE THR LEU PRO THR LYS LYS SER SEQRES 36 A 511 ASN ASN MET GLU SER PHE TRP LEU ALA GLU THR LEU LYS SEQRES 37 A 511 TYR LEU TYR ILE LEU PHE LEU ASP GLU PHE ASP LEU THR SEQRES 38 A 511 LYS VAL VAL PHE ASN THR GLU ALA HIS PRO PHE PRO VAL SEQRES 39 A 511 LEU ASP GLU GLU ILE LEU LYS SER GLN SER LEU THR THR SEQRES 40 A 511 GLY TRP SER LEU HET NAG B 1 14 HET NDG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET MAN B 6 11 HET MAN B 7 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG A 700 14 HET CA A 901 1 HET GOL A 900 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 NDG C8 H15 N O6 FORMUL 2 BMA 2(C6 H12 O6) FORMUL 2 MAN 4(C6 H12 O6) FORMUL 5 CA CA 2+ FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *393(H2 O) HELIX 1 1 GLY A 34 GLY A 57 1 24 HELIX 2 2 ILE A 83 SER A 98 1 16 HELIX 3 3 TYR A 101 VAL A 119 1 19 HELIX 4 4 VAL A 130 GLU A 152 1 23 HELIX 5 5 ASN A 155 LEU A 172 1 18 HELIX 6 6 ALA A 173 SER A 176 5 4 HELIX 7 7 ALA A 198 ALA A 202 5 5 HELIX 8 8 THR A 205 THR A 209 1 5 HELIX 9 9 LEU A 211 GLY A 223 1 13 HELIX 10 10 ASN A 224 ARG A 233 1 10 HELIX 11 11 VAL A 234 ASP A 243 1 10 HELIX 12 12 ASP A 243 ASP A 249 1 7 HELIX 13 13 GLY A 274 HIS A 289 1 16 HELIX 14 14 GLU A 290 LEU A 308 1 19 HELIX 15 15 LEU A 338 CYS A 340 5 3 HELIX 16 16 PHE A 341 GLU A 352 1 12 HELIX 17 17 SER A 355 ARG A 360 1 6 HELIX 18 18 SER A 366 GLN A 391 1 21 HELIX 19 19 LYS A 424 ARG A 428 5 5 HELIX 20 20 PRO A 434 HIS A 448 1 15 HELIX 21 21 HIS A 450 THR A 467 1 18 HELIX 22 22 GLU A 497 GLU A 503 1 7 HELIX 23 23 GLU A 503 PHE A 512 1 10 HELIX 24 24 ASP A 534 GLN A 541 1 8 SHEET 1 A 2 VAL A 62 GLY A 64 0 SHEET 2 A 2 THR A 69 HIS A 71 -1 O THR A 69 N GLY A 64 SHEET 1 B 3 GLU A 127 ASN A 129 0 SHEET 2 B 3 SER A 185 ASN A 187 -1 O ILE A 186 N VAL A 128 SHEET 3 B 3 ALA A 193 VAL A 194 -1 N VAL A 194 O SER A 185 SHEET 1 C 2 SER A 203 SER A 204 0 SHEET 2 C 2 TYR A 255 THR A 256 -1 N THR A 256 O SER A 203 SHEET 1 D 2 LEU A 309 GLN A 311 0 SHEET 2 D 2 TRP A 318 ILE A 320 -1 N TYR A 319 O ALA A 310 SHEET 1 E 4 LYS A 334 ASP A 336 0 SHEET 2 E 4 ILE A 400 PHE A 403 -1 O VAL A 401 N MET A 335 SHEET 3 E 4 PHE A 421 VAL A 423 -1 N PHE A 422 O VAL A 402 SHEET 4 E 4 TRP A 414 ARG A 415 -1 N TRP A 414 O VAL A 423 SHEET 1 F 2 CYS A 468 VAL A 469 0 SHEET 2 F 2 ARG A 478 PHE A 479 -1 O ARG A 478 N VAL A 469 SHEET 1 G 2 LEU A 482 ASP A 484 0 SHEET 2 G 2 LYS A 491 LYS A 492 -1 N LYS A 491 O ASP A 484 SHEET 1 H 2 VAL A 521 PHE A 523 0 SHEET 2 H 2 PRO A 529 PRO A 531 -1 N PHE A 530 O VAL A 522 SSBOND 1 CYS A 340 CYS A 385 1555 1555 2.43 SSBOND 2 CYS A 468 CYS A 471 1555 1555 2.47 LINK O4 NAG B 1 C1 NDG B 2 1555 1555 1.38 LINK O4 NDG B 2 C1 BMA B 3 1555 1555 1.38 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.41 LINK O3 BMA B 3 C1 MAN B 7 1555 1555 1.40 LINK O3 MAN B 4 C1 MAN B 5 1555 1555 1.40 LINK O6 MAN B 4 C1 MAN B 6 1555 1555 1.40 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.38 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.39 LINK O THR A 525 CA CA A 901 1555 1555 2.50 LINK OG1 THR A 525 CA CA A 901 1555 1555 2.48 LINK CA CA A 901 O HOH A 951 1555 1555 2.38 LINK CA CA A 901 O HOH A 954 1555 1555 2.45 LINK CA CA A 901 O HOH A1019 1555 1555 2.36 LINK CA CA A 901 O HOH A1088 1555 1555 2.45 LINK CA CA A 901 O HOH A1190 1555 1555 3.27 CISPEP 1 LYS A 313 PRO A 314 0 0.09 CISPEP 2 LEU A 488 PRO A 489 0 -0.02 CRYST1 88.397 88.397 153.220 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011313 0.006531 0.000000 0.00000 SCALE2 0.000000 0.013063 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006527 0.00000