data_1DL7 # _entry.id 1DL7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1DL7 RCSB RCSB010178 WWPDB D_1000010178 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DL7 _pdbx_database_status.recvd_initial_deposition_date 1999-12-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schumacher, M.' 1 'Brown, M.' 2 # _citation.id primary _citation.title 'The structural basis of repertoire shift in an immune response to phosphocholine.' _citation.journal_abbrev J.Exp.Med. _citation.journal_volume 191 _citation.page_first 2101 _citation.page_last 2112 _citation.year 2000 _citation.journal_id_ASTM JEMEAV _citation.country US _citation.journal_id_ISSN 0022-1007 _citation.journal_id_CSD 0774 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10859335 _citation.pdbx_database_id_DOI 10.1084/jem.191.12.2101 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Brown, M.' 1 primary 'Schumacher, M.A.' 2 primary 'Wiens, G.D.' 3 primary 'Brennan, R.G.' 4 primary 'Rittenberg, M.B.' 5 # _cell.entry_id 1DL7 _cell.length_a 130.900 _cell.length_b 35.900 _cell.length_c 50.450 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1DL7 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PROTEIN (ANTIBODY M3C65 (LIGHT CHAIN))' 11544.834 1 ? ? 'FV (SINGLE CHAIN)' 'COMBINED LIGHT AND HEAVY CHAIN VIA (G4S)3 LINKER' 2 polymer man 'PROTEIN (ANTIBODY M3C65 (HEAVY CHAIN))' 12333.841 1 ? ? 'FV (SINGLE CHAIN)' ? 3 non-polymer syn P-NITROPHENYL-PHOSPHOCHOLINE 305.244 1 ? ? ? ? 4 water nat water 18.015 79 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;QAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTKHRTPGAPARFSGSLIGDKAALTITGA QTEDEAIYFCALWYSNHWVFGGGTKLTVL ; ;QAVVTQESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTKHRTPGAPARFSGSLIGDKAALTITGA QTEDEAIYFCALWYSNHWVFGGGTKLTVL ; L ? 2 'polypeptide(L)' no no ;QVQLKESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGSTDYNSALKSRLNISKDKSKSQVFL RMYSLQTDDTARYYCARDYGPYWGQGTLVTVS ; ;QVQLKESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGSTDYNSALKSRLNISKDKSKSQVFL RMYSLQTDDTARYYCARDYGPYWGQGTLVTVS ; H ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ALA n 1 3 VAL n 1 4 VAL n 1 5 THR n 1 6 GLN n 1 7 GLU n 1 8 SER n 1 9 ALA n 1 10 LEU n 1 11 THR n 1 12 THR n 1 13 SER n 1 14 PRO n 1 15 GLY n 1 16 GLU n 1 17 THR n 1 18 VAL n 1 19 THR n 1 20 LEU n 1 21 THR n 1 22 CYS n 1 23 ARG n 1 24 SER n 1 25 SER n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 VAL n 1 30 THR n 1 31 THR n 1 32 SER n 1 33 ASN n 1 34 TYR n 1 35 ALA n 1 36 ASN n 1 37 TRP n 1 38 VAL n 1 39 GLN n 1 40 GLU n 1 41 LYS n 1 42 PRO n 1 43 ASP n 1 44 HIS n 1 45 LEU n 1 46 PHE n 1 47 THR n 1 48 GLY n 1 49 LEU n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 THR n 1 54 LYS n 1 55 HIS n 1 56 ARG n 1 57 THR n 1 58 PRO n 1 59 GLY n 1 60 ALA n 1 61 PRO n 1 62 ALA n 1 63 ARG n 1 64 PHE n 1 65 SER n 1 66 GLY n 1 67 SER n 1 68 LEU n 1 69 ILE n 1 70 GLY n 1 71 ASP n 1 72 LYS n 1 73 ALA n 1 74 ALA n 1 75 LEU n 1 76 THR n 1 77 ILE n 1 78 THR n 1 79 GLY n 1 80 ALA n 1 81 GLN n 1 82 THR n 1 83 GLU n 1 84 ASP n 1 85 GLU n 1 86 ALA n 1 87 ILE n 1 88 TYR n 1 89 PHE n 1 90 CYS n 1 91 ALA n 1 92 LEU n 1 93 TRP n 1 94 TYR n 1 95 SER n 1 96 ASN n 1 97 HIS n 1 98 TRP n 1 99 VAL n 1 100 PHE n 1 101 GLY n 1 102 GLY n 1 103 GLY n 1 104 THR n 1 105 LYS n 1 106 LEU n 1 107 THR n 1 108 VAL n 1 109 LEU n 2 1 GLN n 2 2 VAL n 2 3 GLN n 2 4 LEU n 2 5 LYS n 2 6 GLU n 2 7 SER n 2 8 GLY n 2 9 PRO n 2 10 GLY n 2 11 LEU n 2 12 VAL n 2 13 ALA n 2 14 PRO n 2 15 SER n 2 16 GLN n 2 17 SER n 2 18 LEU n 2 19 SER n 2 20 ILE n 2 21 THR n 2 22 CYS n 2 23 THR n 2 24 VAL n 2 25 SER n 2 26 GLY n 2 27 PHE n 2 28 SER n 2 29 LEU n 2 30 THR n 2 31 GLY n 2 32 TYR n 2 33 GLY n 2 34 VAL n 2 35 ASN n 2 36 TRP n 2 37 VAL n 2 38 ARG n 2 39 GLN n 2 40 PRO n 2 41 PRO n 2 42 GLY n 2 43 LYS n 2 44 GLY n 2 45 LEU n 2 46 GLU n 2 47 TRP n 2 48 LEU n 2 49 GLY n 2 50 MET n 2 51 ILE n 2 52 TRP n 2 53 GLY n 2 54 ASP n 2 55 GLY n 2 56 SER n 2 57 THR n 2 58 ASP n 2 59 TYR n 2 60 ASN n 2 61 SER n 2 62 ALA n 2 63 LEU n 2 64 LYS n 2 65 SER n 2 66 ARG n 2 67 LEU n 2 68 ASN n 2 69 ILE n 2 70 SER n 2 71 LYS n 2 72 ASP n 2 73 LYS n 2 74 SER n 2 75 LYS n 2 76 SER n 2 77 GLN n 2 78 VAL n 2 79 PHE n 2 80 LEU n 2 81 ARG n 2 82 MET n 2 83 TYR n 2 84 SER n 2 85 LEU n 2 86 GLN n 2 87 THR n 2 88 ASP n 2 89 ASP n 2 90 THR n 2 91 ALA n 2 92 ARG n 2 93 TYR n 2 94 TYR n 2 95 CYS n 2 96 ALA n 2 97 ARG n 2 98 ASP n 2 99 TYR n 2 100 GLY n 2 101 PRO n 2 102 TYR n 2 103 TRP n 2 104 GLY n 2 105 GLN n 2 106 GLY n 2 107 THR n 2 108 LEU n 2 109 VAL n 2 110 THR n 2 111 VAL n 2 112 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? mouse ? 'HYBRIDOMA M3C65' ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? PLASMID ? ? ? PET3D ? ? 2 1 sample ? ? ? mouse ? 'HYBRIDOMA M3C65' ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? PLASMID ? ? ? PET3D ? ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 1 PDB 1DL7 1DL7 ? ? ? 2 2 PDB 1DL7 1DL7 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DL7 L 1 ? 109 ? 1DL7 1 ? 109 ? 1 109 2 2 1DL7 H 1 ? 112 ? 1DL7 1 ? 112 ? 1 112 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NCH non-polymer . P-NITROPHENYL-PHOSPHOCHOLINE ? 'C11 H18 N2 O6 P 1' 305.244 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1DL7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_percent_sol 50.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298. _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'SODIUM/POTASSIUM PHOSPHATE, HEPES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 298. _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU300' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DL7 _reflns.observed_criterion_sigma_I 1. _reflns.observed_criterion_sigma_F 1. _reflns.d_resolution_low 10. _reflns.d_resolution_high 2.35 _reflns.number_obs 8983 _reflns.number_all 47930 _reflns.percent_possible_obs 84 _reflns.pdbx_Rmerge_I_obs 0.073 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.5 _reflns.B_iso_Wilson_estimate 20. _reflns.pdbx_redundancy 2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.35 _reflns_shell.d_res_low 2.42 _reflns_shell.percent_possible_all 52 _reflns_shell.Rmerge_I_obs 0.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1DL7 _refine.ls_number_reflns_obs 8983 _refine.ls_number_reflns_all 47930 _refine.pdbx_ls_sigma_I 1.0 _refine.pdbx_ls_sigma_F 1.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.0 _refine.ls_d_res_high 2.35 _refine.ls_percent_reflns_obs 84 _refine.ls_R_factor_obs 0.191 _refine.ls_R_factor_all 0.189 _refine.ls_R_factor_R_work 0.189 _refine.ls_R_factor_R_free 0.265 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 43 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1680 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 79 _refine_hist.number_atoms_total 1779 _refine_hist.d_res_high 2.35 _refine_hist.d_res_low 10.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? t_angle_deg 1.90 ? ? ? 'X-RAY DIFFRACTION' ? t_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? ? ? 'X-RAY DIFFRACTION' ? t_gen_planes ? ? ? ? 'X-RAY DIFFRACTION' ? t_it ? ? ? ? 'X-RAY DIFFRACTION' ? t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1DL7 _struct.title 'THE STRUCTURAL BASIS OF REPERTOIRE SHIFT IN AN IMMUNE RESPONSE TO PHOSPHOCHOLINE' _struct.pdbx_descriptor 'ANTIBODY M3C65 (SINGLE CHAIN FV)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DL7 _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'SINGLE CHAIN FV, REPERTOIRE SHIFT, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details 'the biological assembly is a dimer of one light chain and one heavy chain.' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 81 ? GLU A 85 ? GLN L 81 GLU L 85 5 ? 5 HELX_P HELX_P2 2 SER B 61 ? LYS B 64 ? SER H 61 LYS H 64 5 ? 4 HELX_P HELX_P3 3 GLN B 86 ? THR B 90 ? GLN H 86 THR H 90 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 90 SG ? ? L CYS 22 L CYS 90 1_555 ? ? ? ? ? ? ? 2.034 ? disulf2 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 95 SG ? ? H CYS 22 H CYS 95 1_555 ? ? ? ? ? ? ? 2.036 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 100 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 100 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 101 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 101 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.03 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? B1 ? 6 ? C ? 3 ? D ? 3 ? E ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B1 1 2 ? anti-parallel B1 2 3 ? anti-parallel B1 3 4 ? anti-parallel B1 4 5 ? anti-parallel B1 5 6 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 4 ? THR A 5 ? VAL L 4 THR L 5 A 2 ARG A 23 ? SER A 24 ? ARG L 23 SER L 24 B 1 HIS A 55 ? ARG A 56 ? HIS L 55 ARG L 56 B 2 LEU A 45 ? GLY A 51 ? LEU L 45 GLY L 51 B 3 ASN A 36 ? LYS A 41 ? ASN L 36 LYS L 41 B 4 ALA A 86 ? LEU A 92 ? ALA L 86 LEU L 92 B 5 VAL A 99 ? PHE A 100 ? VAL L 99 PHE L 100 B1 1 HIS A 55 ? ARG A 56 ? HIS L 55 ARG L 56 B1 2 LEU A 45 ? GLY A 51 ? LEU L 45 GLY L 51 B1 3 ASN A 36 ? LYS A 41 ? ASN L 36 LYS L 41 B1 4 ALA A 86 ? LEU A 92 ? ALA L 86 LEU L 92 B1 5 THR A 104 ? VAL A 108 ? THR L 104 VAL L 108 B1 6 ALA A 9 ? THR A 12 ? ALA L 9 THR L 12 C 1 THR A 17 ? LEU A 20 ? THR L 17 LEU L 20 C 2 LYS A 72 ? THR A 78 ? LYS L 72 THR L 78 C 3 PHE A 64 ? ILE A 69 ? PHE L 64 ILE L 69 D 1 LEU B 18 ? THR B 23 ? LEU H 18 THR H 23 D 2 GLN B 77 ? MET B 82 ? GLN H 77 MET H 82 D 3 SER B 70 ? ASP B 72 ? SER H 70 ASP H 72 E 1 THR B 57 ? TYR B 59 ? THR H 57 TYR H 59 E 2 GLU B 46 ? ILE B 51 ? GLU H 46 ILE H 51 E 3 VAL B 34 ? GLN B 39 ? VAL H 34 GLN H 39 E 4 ALA B 91 ? ARG B 97 ? ALA H 91 ARG H 97 E 5 LEU B 108 ? VAL B 109 ? LEU H 108 VAL H 109 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 5 ? O THR L 5 N ARG A 23 ? N ARG L 23 B 1 2 N HIS A 55 ? N HIS L 55 O GLY A 51 ? O GLY L 51 B 2 3 N LEU A 49 ? N LEU L 49 O TRP A 37 ? O TRP L 37 B 3 4 N GLU A 40 ? N GLU L 40 O ILE A 87 ? O ILE L 87 B 4 5 N LEU A 92 ? N LEU L 92 O VAL A 99 ? O VAL L 99 B1 1 2 N HIS A 55 ? N HIS L 55 O GLY A 51 ? O GLY L 51 B1 2 3 N LEU A 49 ? N LEU L 49 O TRP A 37 ? O TRP L 37 B1 3 4 N GLU A 40 ? N GLU L 40 O ILE A 87 ? O ILE L 87 B1 4 5 N TYR A 88 ? N TYR L 88 O THR A 104 ? O THR L 104 B1 5 6 O LYS A 105 ? O LYS L 105 N LEU A 10 ? N LEU L 10 C 1 2 N LEU A 20 ? N LEU L 20 O LEU A 75 ? O LEU L 75 C 2 3 N THR A 76 ? N THR L 76 O SER A 65 ? O SER L 65 D 1 2 N CYS B 22 ? N CYS H 22 O VAL B 78 ? O VAL H 78 D 2 3 N PHE B 79 ? N PHE H 79 O SER B 70 ? O SER H 70 E 1 2 O ASP B 58 ? O ASP H 58 N MET B 50 ? N MET H 50 E 2 3 N ILE B 51 ? N ILE H 51 O VAL B 34 ? O VAL H 34 E 3 4 N GLN B 39 ? N GLN H 39 O ARG B 92 ? O ARG H 92 E 4 5 O ALA B 91 ? O ALA H 91 N VAL B 109 ? N VAL H 109 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 12 _struct_site.details 'BINDING SITE FOR RESIDUE NCH L 999' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 TRP B 52 ? TRP H 52 . ? 1_555 ? 2 AC1 12 TYR B 83 ? TYR H 83 . ? 2_664 ? 3 AC1 12 ASP B 98 ? ASP H 98 . ? 1_555 ? 4 AC1 12 TYR B 99 ? TYR H 99 . ? 1_555 ? 5 AC1 12 TYR A 34 ? TYR L 34 . ? 1_555 ? 6 AC1 12 ASN A 36 ? ASN L 36 . ? 1_555 ? 7 AC1 12 GLY A 51 ? GLY L 51 . ? 1_555 ? 8 AC1 12 GLY A 52 ? GLY L 52 . ? 1_555 ? 9 AC1 12 HIS A 55 ? HIS L 55 . ? 1_555 ? 10 AC1 12 TRP A 93 ? TRP L 93 . ? 1_555 ? 11 AC1 12 HOH D . ? HOH L 1023 . ? 1_555 ? 12 AC1 12 HOH D . ? HOH L 1026 . ? 1_555 ? # _database_PDB_matrix.entry_id 1DL7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1DL7 _atom_sites.fract_transf_matrix[1][1] 0.007639 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027855 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019822 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text 'CIS PROLINE - PRO H 101' # loop_ _atom_type.symbol C N O P S # loop_ _database_PDB_caveat.text 'SER 112 H HAS INCORRECT CHIRALITY' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 1 GLN GLN L . n A 1 2 ALA 2 2 2 ALA ALA L . n A 1 3 VAL 3 3 3 VAL VAL L . n A 1 4 VAL 4 4 4 VAL VAL L . n A 1 5 THR 5 5 5 THR THR L . n A 1 6 GLN 6 6 6 GLN GLN L . n A 1 7 GLU 7 7 7 GLU GLU L . n A 1 8 SER 8 8 8 SER SER L . n A 1 9 ALA 9 9 9 ALA ALA L . n A 1 10 LEU 10 10 10 LEU LEU L . n A 1 11 THR 11 11 11 THR THR L . n A 1 12 THR 12 12 12 THR THR L . n A 1 13 SER 13 13 13 SER SER L . n A 1 14 PRO 14 14 14 PRO PRO L . n A 1 15 GLY 15 15 15 GLY GLY L . n A 1 16 GLU 16 16 16 GLU GLU L . n A 1 17 THR 17 17 17 THR THR L . n A 1 18 VAL 18 18 18 VAL VAL L . n A 1 19 THR 19 19 19 THR THR L . n A 1 20 LEU 20 20 20 LEU LEU L . n A 1 21 THR 21 21 21 THR THR L . n A 1 22 CYS 22 22 22 CYS CYS L . n A 1 23 ARG 23 23 23 ARG ARG L . n A 1 24 SER 24 24 24 SER SER L . n A 1 25 SER 25 25 25 SER SER L . n A 1 26 THR 26 26 26 THR THR L . n A 1 27 GLY 27 27 27 GLY GLY L . n A 1 28 ALA 28 28 28 ALA ALA L . n A 1 29 VAL 29 29 29 VAL VAL L . n A 1 30 THR 30 30 30 THR THR L . n A 1 31 THR 31 31 31 THR THR L . n A 1 32 SER 32 32 32 SER SER L . n A 1 33 ASN 33 33 33 ASN ASN L . n A 1 34 TYR 34 34 34 TYR TYR L . n A 1 35 ALA 35 35 35 ALA ALA L . n A 1 36 ASN 36 36 36 ASN ASN L . n A 1 37 TRP 37 37 37 TRP TRP L . n A 1 38 VAL 38 38 38 VAL VAL L . n A 1 39 GLN 39 39 39 GLN GLN L . n A 1 40 GLU 40 40 40 GLU GLU L . n A 1 41 LYS 41 41 41 LYS LYS L . n A 1 42 PRO 42 42 42 PRO PRO L . n A 1 43 ASP 43 43 43 ASP ASP L . n A 1 44 HIS 44 44 44 HIS HIS L . n A 1 45 LEU 45 45 45 LEU LEU L . n A 1 46 PHE 46 46 46 PHE PHE L . n A 1 47 THR 47 47 47 THR THR L . n A 1 48 GLY 48 48 48 GLY GLY L . n A 1 49 LEU 49 49 49 LEU LEU L . n A 1 50 ILE 50 50 50 ILE ILE L . n A 1 51 GLY 51 51 51 GLY GLY L . n A 1 52 GLY 52 52 52 GLY GLY L . n A 1 53 THR 53 53 53 THR THR L . n A 1 54 LYS 54 54 54 LYS LYS L . n A 1 55 HIS 55 55 55 HIS HIS L . n A 1 56 ARG 56 56 56 ARG ARG L . n A 1 57 THR 57 57 57 THR THR L . n A 1 58 PRO 58 58 58 PRO PRO L . n A 1 59 GLY 59 59 59 GLY GLY L . n A 1 60 ALA 60 60 60 ALA ALA L . n A 1 61 PRO 61 61 61 PRO PRO L . n A 1 62 ALA 62 62 62 ALA ALA L . n A 1 63 ARG 63 63 63 ARG ARG L . n A 1 64 PHE 64 64 64 PHE PHE L . n A 1 65 SER 65 65 65 SER SER L . n A 1 66 GLY 66 66 66 GLY GLY L . n A 1 67 SER 67 67 67 SER SER L . n A 1 68 LEU 68 68 68 LEU LEU L . n A 1 69 ILE 69 69 69 ILE ILE L . n A 1 70 GLY 70 70 70 GLY GLY L . n A 1 71 ASP 71 71 71 ASP ASP L . n A 1 72 LYS 72 72 72 LYS LYS L . n A 1 73 ALA 73 73 73 ALA ALA L . n A 1 74 ALA 74 74 74 ALA ALA L . n A 1 75 LEU 75 75 75 LEU LEU L . n A 1 76 THR 76 76 76 THR THR L . n A 1 77 ILE 77 77 77 ILE ILE L . n A 1 78 THR 78 78 78 THR THR L . n A 1 79 GLY 79 79 79 GLY GLY L . n A 1 80 ALA 80 80 80 ALA ALA L . n A 1 81 GLN 81 81 81 GLN GLN L . n A 1 82 THR 82 82 82 THR THR L . n A 1 83 GLU 83 83 83 GLU GLU L . n A 1 84 ASP 84 84 84 ASP ASP L . n A 1 85 GLU 85 85 85 GLU GLU L . n A 1 86 ALA 86 86 86 ALA ALA L . n A 1 87 ILE 87 87 87 ILE ILE L . n A 1 88 TYR 88 88 88 TYR TYR L . n A 1 89 PHE 89 89 89 PHE PHE L . n A 1 90 CYS 90 90 90 CYS CYS L . n A 1 91 ALA 91 91 91 ALA ALA L . n A 1 92 LEU 92 92 92 LEU LEU L . n A 1 93 TRP 93 93 93 TRP TRP L . n A 1 94 TYR 94 94 94 TYR TYR L . n A 1 95 SER 95 95 95 SER SER L . n A 1 96 ASN 96 96 96 ASN ASN L . n A 1 97 HIS 97 97 97 HIS HIS L . n A 1 98 TRP 98 98 98 TRP TRP L . n A 1 99 VAL 99 99 99 VAL VAL L . n A 1 100 PHE 100 100 100 PHE PHE L . n A 1 101 GLY 101 101 101 GLY GLY L . n A 1 102 GLY 102 102 102 GLY GLY L . n A 1 103 GLY 103 103 103 GLY GLY L . n A 1 104 THR 104 104 104 THR THR L . n A 1 105 LYS 105 105 105 LYS LYS L . n A 1 106 LEU 106 106 106 LEU LEU L . n A 1 107 THR 107 107 107 THR THR L . n A 1 108 VAL 108 108 108 VAL VAL L . n A 1 109 LEU 109 109 109 LEU LEU L . n B 2 1 GLN 1 1 1 GLN GLN H . n B 2 2 VAL 2 2 2 VAL VAL H . n B 2 3 GLN 3 3 3 GLN GLN H . n B 2 4 LEU 4 4 4 LEU LEU H . n B 2 5 LYS 5 5 5 LYS LYS H . n B 2 6 GLU 6 6 6 GLU GLU H . n B 2 7 SER 7 7 7 SER SER H . n B 2 8 GLY 8 8 8 GLY GLY H . n B 2 9 PRO 9 9 9 PRO PRO H . n B 2 10 GLY 10 10 10 GLY GLY H . n B 2 11 LEU 11 11 11 LEU LEU H . n B 2 12 VAL 12 12 12 VAL VAL H . n B 2 13 ALA 13 13 13 ALA ALA H . n B 2 14 PRO 14 14 14 PRO PRO H . n B 2 15 SER 15 15 15 SER SER H . n B 2 16 GLN 16 16 16 GLN GLN H . n B 2 17 SER 17 17 17 SER SER H . n B 2 18 LEU 18 18 18 LEU LEU H . n B 2 19 SER 19 19 19 SER SER H . n B 2 20 ILE 20 20 20 ILE ILE H . n B 2 21 THR 21 21 21 THR THR H . n B 2 22 CYS 22 22 22 CYS CYS H . n B 2 23 THR 23 23 23 THR THR H . n B 2 24 VAL 24 24 24 VAL VAL H . n B 2 25 SER 25 25 25 SER SER H . n B 2 26 GLY 26 26 26 GLY GLY H . n B 2 27 PHE 27 27 27 PHE PHE H . n B 2 28 SER 28 28 28 SER SER H . n B 2 29 LEU 29 29 29 LEU LEU H . n B 2 30 THR 30 30 30 THR THR H . n B 2 31 GLY 31 31 31 GLY GLY H . n B 2 32 TYR 32 32 32 TYR TYR H . n B 2 33 GLY 33 33 33 GLY GLY H . n B 2 34 VAL 34 34 34 VAL VAL H . n B 2 35 ASN 35 35 35 ASN ASN H . n B 2 36 TRP 36 36 36 TRP TRP H . n B 2 37 VAL 37 37 37 VAL VAL H . n B 2 38 ARG 38 38 38 ARG ARG H . n B 2 39 GLN 39 39 39 GLN GLN H . n B 2 40 PRO 40 40 40 PRO PRO H . n B 2 41 PRO 41 41 41 PRO PRO H . n B 2 42 GLY 42 42 42 GLY GLY H . n B 2 43 LYS 43 43 43 LYS LYS H . n B 2 44 GLY 44 44 44 GLY GLY H . n B 2 45 LEU 45 45 45 LEU LEU H . n B 2 46 GLU 46 46 46 GLU GLU H . n B 2 47 TRP 47 47 47 TRP TRP H . n B 2 48 LEU 48 48 48 LEU LEU H . n B 2 49 GLY 49 49 49 GLY GLY H . n B 2 50 MET 50 50 50 MET MET H . n B 2 51 ILE 51 51 51 ILE ILE H . n B 2 52 TRP 52 52 52 TRP TRP H . n B 2 53 GLY 53 53 53 GLY GLY H . n B 2 54 ASP 54 54 54 ASP ASP H . n B 2 55 GLY 55 55 55 GLY GLY H . n B 2 56 SER 56 56 56 SER SER H . n B 2 57 THR 57 57 57 THR THR H . n B 2 58 ASP 58 58 58 ASP ASP H . n B 2 59 TYR 59 59 59 TYR TYR H . n B 2 60 ASN 60 60 60 ASN ASN H . n B 2 61 SER 61 61 61 SER SER H . n B 2 62 ALA 62 62 62 ALA ALA H . n B 2 63 LEU 63 63 63 LEU LEU H . n B 2 64 LYS 64 64 64 LYS LYS H . n B 2 65 SER 65 65 65 SER SER H . n B 2 66 ARG 66 66 66 ARG ARG H . n B 2 67 LEU 67 67 67 LEU LEU H . n B 2 68 ASN 68 68 68 ASN ASN H . n B 2 69 ILE 69 69 69 ILE ILE H . n B 2 70 SER 70 70 70 SER SER H . n B 2 71 LYS 71 71 71 LYS LYS H . n B 2 72 ASP 72 72 72 ASP ASP H . n B 2 73 LYS 73 73 73 LYS LYS H . n B 2 74 SER 74 74 74 SER SER H . n B 2 75 LYS 75 75 75 LYS LYS H . n B 2 76 SER 76 76 76 SER SER H . n B 2 77 GLN 77 77 77 GLN GLN H . n B 2 78 VAL 78 78 78 VAL VAL H . n B 2 79 PHE 79 79 79 PHE PHE H . n B 2 80 LEU 80 80 80 LEU LEU H . n B 2 81 ARG 81 81 81 ARG ARG H . n B 2 82 MET 82 82 82 MET MET H . n B 2 83 TYR 83 83 83 TYR TYR H . n B 2 84 SER 84 84 84 SER SER H . n B 2 85 LEU 85 85 85 LEU LEU H . n B 2 86 GLN 86 86 86 GLN GLN H . n B 2 87 THR 87 87 87 THR THR H . n B 2 88 ASP 88 88 88 ASP ASP H . n B 2 89 ASP 89 89 89 ASP ASP H . n B 2 90 THR 90 90 90 THR THR H . n B 2 91 ALA 91 91 91 ALA ALA H . n B 2 92 ARG 92 92 92 ARG ARG H . n B 2 93 TYR 93 93 93 TYR TYR H . n B 2 94 TYR 94 94 94 TYR TYR H . n B 2 95 CYS 95 95 95 CYS CYS H . n B 2 96 ALA 96 96 96 ALA ALA H . n B 2 97 ARG 97 97 97 ARG ARG H . n B 2 98 ASP 98 98 98 ASP ASP H . n B 2 99 TYR 99 99 99 TYR TYR H . n B 2 100 GLY 100 100 100 GLY GLY H . n B 2 101 PRO 101 101 101 PRO PRO H . n B 2 102 TYR 102 102 102 TYR TYR H . n B 2 103 TRP 103 103 103 TRP TRP H . n B 2 104 GLY 104 104 104 GLY GLY H . n B 2 105 GLN 105 105 105 GLN GLN H . n B 2 106 GLY 106 106 106 GLY GLY H . n B 2 107 THR 107 107 107 THR THR H . n B 2 108 LEU 108 108 108 LEU LEU H . n B 2 109 VAL 109 109 109 VAL VAL H . n B 2 110 THR 110 110 110 THR THR H . n B 2 111 VAL 111 111 111 VAL VAL H . n B 2 112 SER 112 112 112 SER SER H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NCH 1 999 999 NCH NCH L . D 4 HOH 1 1000 100 HOH HOH L . D 4 HOH 2 1001 101 HOH HOH L . D 4 HOH 3 1002 102 HOH HOH L . D 4 HOH 4 1003 103 HOH HOH L . D 4 HOH 5 1004 105 HOH HOH L . D 4 HOH 6 1005 108 HOH HOH L . D 4 HOH 7 1006 109 HOH HOH L . D 4 HOH 8 1007 110 HOH HOH L . D 4 HOH 9 1008 111 HOH HOH L . D 4 HOH 10 1009 112 HOH HOH L . D 4 HOH 11 1010 113 HOH HOH L . D 4 HOH 12 1011 114 HOH HOH L . D 4 HOH 13 1012 115 HOH HOH L . D 4 HOH 14 1013 116 HOH HOH L . D 4 HOH 15 1014 117 HOH HOH L . D 4 HOH 16 1015 118 HOH HOH L . D 4 HOH 17 1016 119 HOH HOH L . D 4 HOH 18 1017 120 HOH HOH L . D 4 HOH 19 1018 123 HOH HOH L . D 4 HOH 20 1019 124 HOH HOH L . D 4 HOH 21 1020 125 HOH HOH L . D 4 HOH 22 1021 126 HOH HOH L . D 4 HOH 23 1022 129 HOH HOH L . D 4 HOH 24 1023 130 HOH HOH L . D 4 HOH 25 1024 131 HOH HOH L . D 4 HOH 26 1025 134 HOH HOH L . D 4 HOH 27 1026 140 HOH HOH L . D 4 HOH 28 1027 141 HOH HOH L . D 4 HOH 29 1028 142 HOH HOH L . D 4 HOH 30 1029 143 HOH HOH L . D 4 HOH 31 1030 144 HOH HOH L . D 4 HOH 32 1031 146 HOH HOH L . D 4 HOH 33 1032 147 HOH HOH L . D 4 HOH 34 1033 148 HOH HOH L . D 4 HOH 35 1034 151 HOH HOH L . D 4 HOH 36 1035 152 HOH HOH L . D 4 HOH 37 1036 153 HOH HOH L . D 4 HOH 38 1037 154 HOH HOH L . D 4 HOH 39 1038 156 HOH HOH L . D 4 HOH 40 1039 157 HOH HOH L . D 4 HOH 41 1040 158 HOH HOH L . D 4 HOH 42 1041 160 HOH HOH L . D 4 HOH 43 1042 161 HOH HOH L . D 4 HOH 44 1043 162 HOH HOH L . D 4 HOH 45 1044 163 HOH HOH L . D 4 HOH 46 1045 164 HOH HOH L . D 4 HOH 47 1046 165 HOH HOH L . D 4 HOH 48 1047 166 HOH HOH L . D 4 HOH 49 1048 170 HOH HOH L . D 4 HOH 50 1049 174 HOH HOH L . D 4 HOH 51 1050 175 HOH HOH L . D 4 HOH 52 1051 176 HOH HOH L . E 4 HOH 1 113 104 HOH HOH H . E 4 HOH 2 114 106 HOH HOH H . E 4 HOH 3 115 107 HOH HOH H . E 4 HOH 4 116 121 HOH HOH H . E 4 HOH 5 117 122 HOH HOH H . E 4 HOH 6 118 127 HOH HOH H . E 4 HOH 7 119 128 HOH HOH H . E 4 HOH 8 120 132 HOH HOH H . E 4 HOH 9 121 133 HOH HOH H . E 4 HOH 10 122 135 HOH HOH H . E 4 HOH 11 123 136 HOH HOH H . E 4 HOH 12 124 137 HOH HOH H . E 4 HOH 13 125 138 HOH HOH H . E 4 HOH 14 126 139 HOH HOH H . E 4 HOH 15 127 145 HOH HOH H . E 4 HOH 16 128 149 HOH HOH H . E 4 HOH 17 129 150 HOH HOH H . E 4 HOH 18 130 155 HOH HOH H . E 4 HOH 19 131 159 HOH HOH H . E 4 HOH 20 132 167 HOH HOH H . E 4 HOH 21 133 168 HOH HOH H . E 4 HOH 22 134 169 HOH HOH H . E 4 HOH 23 135 171 HOH HOH H . E 4 HOH 24 136 172 HOH HOH H . E 4 HOH 25 137 173 HOH HOH H . E 4 HOH 26 138 177 HOH HOH H . E 4 HOH 27 139 178 HOH HOH H . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1420 ? 1 MORE -10 ? 1 'SSA (A^2)' 10840 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-12-13 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2013-10-02 5 'Structure model' 1 4 2017-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Source and taxonomy' 4 5 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 5 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 5 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal bioteX 'data collection' . ? 1 bioteX 'data reduction' . ? 2 EPMR phasing . ? 3 TNT refinement . ? 4 bioteX 'data scaling' . ? 5 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OD1 L ASP 71 ? ? 1_555 O H SER 112 ? ? 1_554 0.98 2 1 CG L ASP 71 ? ? 1_555 O H SER 112 ? ? 1_554 1.85 3 1 N L ASP 71 ? ? 1_555 O H SER 112 ? ? 1_554 1.94 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N H SER 112 ? ? CA H SER 112 ? ? 2.778 1.459 1.319 0.020 N 2 1 CA H SER 112 ? ? C H SER 112 ? ? 2.958 1.525 1.433 0.026 N 3 1 C H SER 112 ? ? O H SER 112 ? ? 5.042 1.229 3.813 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C H PRO 40 ? ? N H PRO 41 ? ? CD H PRO 41 ? ? 111.36 128.40 -17.04 2.10 Y 2 1 NE H ARG 92 ? ? CZ H ARG 92 ? ? NH2 H ARG 92 ? ? 117.08 120.30 -3.22 0.50 N 3 1 N H SER 112 ? ? CA H SER 112 ? ? C H SER 112 ? ? 137.84 111.00 26.84 2.70 N 4 1 CA H SER 112 ? ? C H SER 112 ? ? O H SER 112 ? ? 103.39 120.10 -16.71 2.10 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR L 34 ? ? 29.50 58.86 2 1 THR L 53 ? ? 56.37 -42.45 3 1 LYS L 54 ? ? -150.62 39.57 4 1 PRO L 58 ? ? -55.92 77.82 5 1 SER L 67 ? ? 179.29 178.42 6 1 ASP L 71 ? ? -94.05 35.76 7 1 ALA L 86 ? ? -178.34 -175.40 8 1 TYR L 94 ? ? -105.91 51.57 9 1 SER L 95 ? ? 81.13 -45.31 10 1 ASN L 96 ? ? -141.01 -4.08 11 1 HIS L 97 ? ? -126.79 -146.53 12 1 GLN H 3 ? ? -174.12 119.54 13 1 LYS H 5 ? ? -166.92 103.72 14 1 GLU H 6 ? ? -68.14 75.25 15 1 SER H 15 ? ? 88.90 -32.89 16 1 PHE H 27 ? ? 177.80 162.57 17 1 TRP H 52 ? ? -43.89 151.39 18 1 SER H 61 ? ? -21.41 -55.54 19 1 ASN H 68 ? ? -173.91 93.73 20 1 ASP H 88 ? ? -67.20 22.42 21 1 ASP H 98 ? ? -68.20 -175.32 22 1 TYR H 99 ? ? 42.50 6.94 23 1 THR H 107 ? ? 175.17 111.86 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 CA ? L SER 95 ? PLANAR . 2 1 CA ? H SER 112 ? 'WRONG HAND' . # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 P-NITROPHENYL-PHOSPHOCHOLINE NCH 4 water HOH #