HEADER NUCLEOTIDYLTRANSFERASE 17-APR-96 1DLO TITLE HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REVERSE TRANSCRIPTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HIV-1 RT; COMPND 5 EC: 2.7.7.49; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REVERSE TRANSCRIPTASE; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: HIV-1 RT; COMPND 12 EC: 2.7.7.49; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: BH10 ISOLATE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 9 ORGANISM_TAXID: 11676; SOURCE 10 STRAIN: BH10 ISOLATE; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOTIDYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.HSIOU,J.DING,K.DAS,S.HUGHES,E.ARNOLD REVDAT 5 07-FEB-24 1DLO 1 REMARK REVDAT 4 03-NOV-21 1DLO 1 SEQADV REVDAT 3 24-FEB-09 1DLO 1 VERSN REVDAT 2 01-APR-03 1DLO 1 JRNL REVDAT 1 01-AUG-96 1DLO 0 JRNL AUTH Y.HSIOU,J.DING,K.DAS,A.D.CLARK JR.,S.H.HUGHES,E.ARNOLD JRNL TITL STRUCTURE OF UNLIGANDED HIV-1 REVERSE TRANSCRIPTASE AT 2.7 A JRNL TITL 2 RESOLUTION: IMPLICATIONS OF CONFORMATIONAL CHANGES FOR JRNL TITL 3 POLYMERIZATION AND INHIBITION MECHANISMS. JRNL REF STRUCTURE V. 4 853 1996 JRNL REFN ISSN 0969-2126 JRNL PMID 8805568 JRNL DOI 10.1016/S0969-2126(96)00091-3 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.DING,K.DAS,C.TANTILLO,W.ZHANG,A.D.CLARK JUNIOR,S.JESSEN, REMARK 1 AUTH 2 X.LU,Y.HSIOU,A.JACOBO-MOLINA,K.ANDRIES,ET AL. REMARK 1 TITL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN A COMPLEX WITH REMARK 1 TITL 2 THE NON-NUCLEOSIDE INHIBITOR ALPHA-APA R 95845 AT 2.8 A REMARK 1 TITL 3 RESOLUTION REMARK 1 REF STRUCTURE V. 3 365 1995 REMARK 1 REFN ISSN 0969-2126 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.DING,K.DAS,H.MOEREELS,L.KOYMANS,K.ANDRIES,P.A.J.JANSSEN, REMARK 1 AUTH 2 S.H.HUGHES,E.ARNOLD REMARK 1 TITL STRUCTURE OF HIV-1 RT/TIBO R 86183 COMPLEX REVEALS REMARK 1 TITL 2 SIMILARITY IN THE BINDING OF DIVERSE NONNUCLEOSIDE REMARK 1 TITL 3 INHIBITORS REMARK 1 REF NAT.STRUCT.BIOL. V. 2 407 1995 REMARK 1 REFN ISSN 1072-8368 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.JACOBO-MOLINA,J.DING,R.G.NANNI,A.D.CLARK JUNIOR,X.LU, REMARK 1 AUTH 2 C.TANTILLO,R.L.WILLIAMS,G.KAMER,A.L.FERRIS,P.CLARK,ET AL. REMARK 1 TITL CRYSTAL STRUCTURE OF HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REMARK 1 TITL 2 REVERSE TRANSCRIPTASE COMPLEXED WITH DOUBLE-STRANDED DNA AT REMARK 1 TITL 3 3.0 A RESOLUTION SHOWS BENT DNA REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 90 6320 1993 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 38310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.336 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7691 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DLO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172834. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : OCT-94 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.908 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41049 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 117.75000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 117.75000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 HIV-1 RT IS COMPOSED OF TWO SUBUNITS OF 66 KDA AND 51 KDA, REMARK 400 DESIGNATED AS P66 AND P51, RESPECTIVELY. REMARK 400 THE POLYMERASE DOMAINS OF BOTH P66 AND P51 CONTAIN OF FOUR REMARK 400 SUBDOMAINS, NAMED FINGERS, PALM, THUMB, AND CONNECTION. REMARK 400 THE BOUNDARIES OF INDIVIDUAL SUBDOMAINS ARE AS FOLLOWING: REMARK 400 FINGERS: 1 - 84 AND 120 - 150 REMARK 400 PALM: 85 - 119 AND 151 - 243 REMARK 400 THUMB: 244 - 322 REMARK 400 CONNECTION: 323 - 437 IN P66 AND 323 - 427 IN P51. REMARK 400 REMARK 400 THE CURRENT MODEL CONTAINS 556 AMINO ACID RESIDUES (1 - REMARK 400 556) AND 4370 NON-HYDROGEN ATOMS FOR P66, 427 AMINO ACID REMARK 400 RESIDUES (1 - 427) AND 3322 NON-HYDROGEN ATOMS FOR P51. REMARK 400 267 WATER MOLECULES WERE INCLUDED IN THE CURRENT REMARK 400 REFINEMENT. REMARK 400 REMARK 400 THE BETA 3 - BETA 4 LOOP (65 - 72), BETA 7 - BETA 8 LOOP REMARK 400 (133 - 143), THE REGION FROM BETA 14 TO ALPHA H (249 - REMARK 400 258), AND ALPHA I - ALPHA J LOOP (281 - 293) OF P66, ARE REMARK 400 HIGHLY DISORDERED WITH VERY POOR ELECTRON DENSITY, REMARK 400 THEREFORE, THE BACKBONE TRACES IN THESE REGIONS ARE REMARK 400 TENTATIVE. THE LOOP BETWEEN ALPHA F AND BETA 13 (219 - REMARK 400 - 230) OF P51 HAS NO ELECTRON DENSITY AND THUS HAS NOT BEEN REMARK 400 MODELED. DUE TO THE VERY WEAK OR INVISIBLE ELECTRON REMARK 400 DENSITY FOR THE SIDE CHAINS, THE FOLLOWING RESIDUES HAVE REMARK 400 BEEN MODELED AS ALANINES DURING THE REFINEMENT BUT ARE REMARK 400 GIVEN THEIR CORRECT RESIDUE NAMES IN THIS ENTRY. REMARK 400 REMARK 400 P66 (CHAIN A): 22, 28, 64, 70 - 71, 134 - 136, 139, 169, REMARK 400 177, 194, 203, 218, 224, 242, 278, 281, 291, REMARK 400 297, 305, 311 - 312, 334, 336, 356 - 359, 404, REMARK 400 407, 413 - 414, 424, 448, 451, 512, 514, 527, REMARK 400 549 - 551, 556. REMARK 400 P51 (CHAIN B): 36, 67 - 69, 88 - 89, 173, 197, 238, 281 - REMARK 400 282, 295, 297, 305 - 306, 308, 356 - 358, 361 - REMARK 400 362, 407, 424 - 425, 427. REMARK 400 REMARK 400 THE DEFINITION OF SECONDARY STRUCTURAL ELEMENTS IS LARGELY REMARK 400 BASED ON PROGRAM PROCHECK AND HYDROGEN-BONDING PATTERN. REMARK 400 THE NAMES OF SECONDARY STRUCTURAL ELEMENTS WERE BASICALLY REMARK 400 KEPT CONSISTENT WITH THAT THE DEPOSITORS USED IN REMARK 400 JACOBO-MOLINA ET AL. (1993). SOME ASSIGNED BETA STRANDS REMARK 400 DO NOT APPEAR TO PARTICIPATE IN BETA SHEETS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 465 GLU B 224 REMARK 465 PRO B 225 REMARK 465 PRO B 226 REMARK 465 PHE B 227 REMARK 465 LEU B 228 REMARK 465 TRP B 229 REMARK 465 MET B 230 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 GLU A 28 CG CD OE1 OE2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 TRP A 71 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 71 CZ3 CH2 REMARK 470 SER A 134 OG REMARK 470 ILE A 135 CG1 CG2 CD1 REMARK 470 ASN A 136 CG OD1 ND2 REMARK 470 THR A 139 OG1 CG2 REMARK 470 GLU A 169 CG CD OE1 OE2 REMARK 470 ASP A 177 CG OD1 OD2 REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 GLU A 224 CG CD OE1 OE2 REMARK 470 GLN A 242 CG CD OE1 NE2 REMARK 470 GLN A 278 CG CD OE1 NE2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 GLU A 305 CG CD OE1 OE2 REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 GLN A 336 CG CD OE1 NE2 REMARK 470 ARG A 356 CG CD NE CZ NH1 NH2 REMARK 470 MET A 357 CG SD CE REMARK 470 ARG A 358 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 404 CG CD OE1 OE2 REMARK 470 GLU A 413 CG CD OE1 OE2 REMARK 470 LYS A 424 CG CD CE NZ REMARK 470 ARG A 448 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 LYS A 512 CG CD CE NZ REMARK 470 GLU A 514 CG CD OE1 OE2 REMARK 470 LYS A 527 CG CD CE NZ REMARK 470 ASP A 549 CG OD1 OD2 REMARK 470 LYS A 550 CG CD CE NZ REMARK 470 ILE A 556 CG1 CG2 CD1 REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 ASP B 67 CG OD1 OD2 REMARK 470 THR B 69 OG1 CG2 REMARK 470 TRP B 88 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 88 CZ3 CH2 REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 GLN B 197 CG CD OE1 NE2 REMARK 470 ASP B 218 CG OD1 OD2 REMARK 470 LYS B 238 CG CD CE NZ REMARK 470 LYS B 281 CG CD CE NZ REMARK 470 LEU B 295 CG CD1 CD2 REMARK 470 GLU B 297 CG CD OE1 OE2 REMARK 470 GLU B 305 CG CD OE1 OE2 REMARK 470 ASN B 306 CG OD1 ND2 REMARK 470 GLU B 308 CG CD OE1 OE2 REMARK 470 ARG B 356 CG CD NE CZ NH1 NH2 REMARK 470 MET B 357 CG SD CE REMARK 470 ARG B 358 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 361 CG ND1 CD2 CE1 NE2 REMARK 470 THR B 362 OG1 CG2 REMARK 470 GLN B 407 CG CD OE1 NE2 REMARK 470 LYS B 424 CG CD CE NZ REMARK 470 LEU B 425 CG CD1 CD2 REMARK 470 TYR B 427 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 176 C - N - CA ANGL. DEV. = 10.4 DEGREES REMARK 500 PRO A 225 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 PRO A 421 C - N - CD ANGL. DEV. = -18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 156.59 -49.43 REMARK 500 LEU A 26 -155.96 -103.87 REMARK 500 PRO A 52 -5.80 -44.08 REMARK 500 LYS A 104 -63.72 -16.70 REMARK 500 ILE A 135 -72.07 -77.62 REMARK 500 PRO A 140 -176.96 -68.98 REMARK 500 TYR A 144 -166.36 -126.02 REMARK 500 MET A 184 -160.58 60.51 REMARK 500 ASP A 185 25.89 -78.66 REMARK 500 ILE A 195 -45.15 -20.02 REMARK 500 HIS A 221 67.61 -68.16 REMARK 500 LYS A 223 89.58 -32.36 REMARK 500 PRO A 225 -67.91 -8.66 REMARK 500 PRO A 226 91.05 -66.17 REMARK 500 LYS A 287 -107.93 -89.22 REMARK 500 ALA A 288 128.78 -18.27 REMARK 500 LEU A 310 4.93 -61.95 REMARK 500 GLN A 332 -115.86 -138.58 REMARK 500 GLN A 334 29.47 26.84 REMARK 500 GLN A 343 -55.04 -126.78 REMARK 500 ALA A 355 116.79 -167.60 REMARK 500 GLU A 413 124.63 -24.90 REMARK 500 PRO A 420 179.42 -36.75 REMARK 500 TYR A 441 77.56 -68.32 REMARK 500 LYS A 451 -10.35 70.26 REMARK 500 VAL A 458 99.63 -173.50 REMARK 500 ARG A 463 151.59 -48.71 REMARK 500 LYS A 465 142.07 177.77 REMARK 500 ILE A 542 -111.37 -80.91 REMARK 500 ALA A 554 -99.22 -76.43 REMARK 500 PRO B 4 99.92 -56.54 REMARK 500 GLU B 36 -74.69 -59.75 REMARK 500 ILE B 37 -39.60 -29.85 REMARK 500 GLU B 44 0.44 -67.53 REMARK 500 ASN B 57 148.32 -171.60 REMARK 500 ILE B 63 -167.77 -116.20 REMARK 500 LYS B 65 -54.30 -25.71 REMARK 500 LYS B 66 -138.48 -139.35 REMARK 500 SER B 68 43.03 37.85 REMARK 500 THR B 69 -125.29 -123.86 REMARK 500 TRP B 88 -87.48 -30.43 REMARK 500 GLU B 89 -32.30 -133.22 REMARK 500 VAL B 90 87.58 -68.57 REMARK 500 GLN B 91 -178.10 -69.44 REMARK 500 PRO B 95 118.63 -39.96 REMARK 500 PRO B 97 83.31 -58.73 REMARK 500 PRO B 140 73.66 -42.98 REMARK 500 TRP B 153 154.76 -32.44 REMARK 500 MET B 184 -119.68 51.02 REMARK 500 ASP B 192 45.37 -75.05 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 501 0.07 SIDE CHAIN REMARK 500 TYR B 127 0.07 SIDE CHAIN REMARK 500 TYR B 183 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1DLO A 1 556 UNP P03366 POL_HV1B1 599 1154 DBREF 1DLO B 1 427 UNP P03366 POL_HV1B1 599 1025 SEQADV 1DLO SER A 280 UNP P03366 CYS 447 ENGINEERED MUTATION SEQADV 1DLO SER B 280 UNP P03366 CYS 447 ENGINEERED MUTATION SEQRES 1 A 556 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 A 556 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 A 556 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 A 556 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 A 556 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 A 556 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 A 556 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 A 556 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 A 556 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 A 556 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 A 556 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 A 556 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 A 556 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 A 556 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 A 556 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 A 556 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 A 556 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 A 556 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 A 556 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 A 556 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 A 556 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 A 556 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 A 556 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 A 556 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 A 556 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 A 556 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 A 556 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 A 556 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 A 556 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 A 556 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 A 556 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 A 556 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 A 556 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN LEU SEQRES 34 A 556 GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE TYR VAL SEQRES 35 A 556 ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY LYS ALA SEQRES 36 A 556 GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL VAL PRO SEQRES 37 A 556 LEU THR ASN THR THR ASN GLN LYS THR GLU LEU GLN ALA SEQRES 38 A 556 ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU VAL ASN SEQRES 39 A 556 ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE ILE GLN SEQRES 40 A 556 ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL ASN GLN SEQRES 41 A 556 ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL TYR LEU SEQRES 42 A 556 ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY ASN GLU SEQRES 43 A 556 GLN VAL ASP LYS LEU VAL SER ALA GLY ILE SEQRES 1 B 427 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 B 427 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 B 427 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 B 427 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 B 427 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 B 427 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 B 427 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 B 427 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 B 427 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 B 427 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 B 427 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 B 427 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 B 427 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 B 427 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 B 427 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 B 427 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 B 427 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 B 427 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 B 427 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 B 427 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 B 427 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 B 427 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 B 427 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 B 427 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 B 427 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 B 427 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 B 427 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 B 427 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 B 427 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 B 427 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 B 427 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 B 427 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 B 427 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR HELIX 1 AA GLU A 28 LYS A 43 1 16 HELIX 2 AB ARG A 78 ARG A 83 1 6 HELIX 3 AC ALA A 114 SER A 117 1 4 HELIX 4 AD GLU A 122 THR A 128 5 7 HELIX 5 AE SER A 156 GLN A 174 1 19 HELIX 6 AF ILE A 195 ARG A 211 1 17 HELIX 7 AH VAL A 254 SER A 268 1 15 HELIX 8 AI ARG A 277 LYS A 281 1 5 HELIX 9 AJ GLU A 297 ILE A 309 1 13 HELIX 10 AK ASP A 364 TRP A 383 1 20 HELIX 11 AL LYS A 395 GLU A 404 1 10 HELIX 12 AA' LYS A 476 GLN A 487 1 12 HELIX 13 AB' GLN A 500 GLN A 507 1 8 HELIX 14 AD' GLU A 516 LYS A 527 1 12 HELIX 15 AE' ASN A 545 LYS A 550 1 6 HELIX 16 BA GLU B 28 LYS B 43 1 16 HELIX 17 BB ARG B 78 ARG B 83 1 6 HELIX 18 BC GLY B 112 SER B 117 5 6 HELIX 19 BD ARG B 125 THR B 128 5 4 HELIX 20 BE GLY B 155 GLN B 174 1 20 HELIX 21 BF ILE B 195 ARG B 211 1 17 HELIX 22 BH VAL B 254 ILE B 270 1 17 HELIX 23 BI ARG B 277 LYS B 281 1 5 HELIX 24 BJ GLU B 297 LYS B 311 1 15 HELIX 25 BK ASP B 364 ILE B 382 1 19 HELIX 26 BL LYS B 395 GLU B 404 1 10 SHEET 1 S1 3 ILE A 47 LYS A 49 0 SHEET 2 S1 3 ILE A 142 TYR A 146 -1 SHEET 3 S1 3 PHE A 130 ILE A 132 -1 SHEET 1 S2 2 ASN A 57 PHE A 61 0 SHEET 2 S2 2 LEU A 74 VAL A 75 -1 SHEET 1 S3 3 LYS A 101 ASP A 110 0 SHEET 2 S3 3 ASP A 186 SER A 191 -1 SHEET 3 S3 3 VAL A 179 TYR A 183 -1 SHEET 1 S4 4 PHE A 227 LEU A 228 0 SHEET 2 S4 4 TYR A 232 HIS A 235 -1 SHEET 3 S4 4 LYS A 238 VAL A 241 -1 SHEET 4 S4 4 HIS A 315 GLY A 316 -1 SHEET 1 S5 4 ASN A 348 ALA A 355 0 SHEET 2 S5 4 GLN A 336 TYR A 342 -1 SHEET 3 S5 4 ILE A 326 GLN A 330 -1 SHEET 4 S5 4 LYS A 388 LEU A 391 1 SHEET 1 S6 5 GLN A 464 LEU A 469 0 SHEET 2 S6 5 GLY A 453 VAL A 458 -1 SHEET 3 S6 5 THR A 439 ALA A 446 -1 SHEET 4 S6 5 GLU A 492 THR A 497 1 SHEET 5 S6 5 LYS A 530 TRP A 535 1 SHEET 1 S7 3 ILE B 47 LYS B 49 0 SHEET 2 S7 3 ILE B 142 TYR B 146 -1 SHEET 3 S7 3 PHE B 130 ILE B 132 -1 SHEET 1 S8 2 ASN B 57 ILE B 63 0 SHEET 2 S8 2 ARG B 72 VAL B 75 -1 SHEET 1 S9 3 SER B 105 ASP B 110 0 SHEET 2 S9 3 ASP B 186 SER B 191 -1 SHEET 3 S9 3 VAL B 179 TYR B 183 -1 SHEET 1 S10 5 LYS B 347 ALA B 355 0 SHEET 2 S10 5 GLN B 336 GLN B 343 -1 SHEET 3 S10 5 ILE B 326 LYS B 331 -1 SHEET 4 S10 5 LYS B 388 LEU B 391 1 SHEET 5 S10 5 TRP B 414 PHE B 416 1 CRYST1 235.500 70.300 93.300 90.00 106.10 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004246 0.000000 0.001226 0.00000 SCALE2 0.000000 0.014225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011156 0.00000