data_1DN4
# 
_entry.id   1DN4 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.385 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1DN4         pdb_00001dn4 10.2210/pdb1dn4/pdb 
RCSB  ZDFB04       ?            ?                   
WWPDB D_1000172849 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1987-04-16 
2 'Structure model' 1 1 2008-05-22 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2018-04-18 
5 'Structure model' 1 4 2024-02-07 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Data collection'           
4 5 'Structure model' 'Data collection'           
5 5 'Structure model' 'Database references'       
6 5 'Structure model' 'Derived calculations'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' diffrn_detector 
2 5 'Structure model' chem_comp_atom  
3 5 'Structure model' chem_comp_bond  
4 5 'Structure model' database_2      
5 5 'Structure model' struct_conn     
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 4 'Structure model' '_diffrn_detector.detector'           
2 5 'Structure model' '_database_2.pdbx_DOI'                
3 5 'Structure model' '_database_2.pdbx_database_accession' 
4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1DN4 
_pdbx_database_status.recvd_initial_deposition_date   1986-12-01 
_pdbx_database_status.deposit_site                    BNL 
_pdbx_database_status.process_site                    BNL 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Chevrier, B.' 1 
'Dock, A.C.'   2 
'Hartmann, B.' 3 
'Leng, M.'     4 
'Moras, D.'    5 
'Thuong, M.T.' 6 
'Westhof, E.'  7 
# 
_citation.id                        primary 
_citation.title                     
'Solvation of the left-handed hexamer d(5BrC-G-5BrC-G-5 BrC-G) in crystals grown at two temperatures.' 
_citation.journal_abbrev            J.Mol.Biol. 
_citation.journal_volume            188 
_citation.page_first                707 
_citation.page_last                 719 
_citation.year                      1986 
_citation.journal_id_ASTM           JMOBAK 
_citation.country                   UK 
_citation.journal_id_ISSN           0022-2836 
_citation.journal_id_CSD            0070 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   3735433 
_citation.pdbx_database_id_DOI      '10.1016/S0022-2836(86)80016-X' 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Chevrier, B.' 1 ? 
primary 'Dock, A.C.'   2 ? 
primary 'Hartmann, B.' 3 ? 
primary 'Leng, M.'     4 ? 
primary 'Moras, D.'    5 ? 
primary 'Thuong, M.T.' 6 ? 
primary 'Westhof, E.'  7 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer syn 
;DNA (5'-D(*(CBR)P*GP*(CBR)P*GP*(CBR)P*G)-3')
;
2046.893 2  ? ? ? ? 
2 water   nat water                                          18.015   61 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   yes 
_entity_poly.pdbx_seq_one_letter_code       '(CBR)(DG)(CBR)(DG)(CBR)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGCGCG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
_pdbx_entity_nonpoly.entity_id   2 
_pdbx_entity_nonpoly.name        water 
_pdbx_entity_nonpoly.comp_id     HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 CBR n 
1 2 DG  n 
1 3 CBR n 
1 4 DG  n 
1 5 CBR n 
1 6 DG  n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
CBR 'DNA linking' n "5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 Br N3 O7 P' 386.093 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"         ? 'C10 H14 N5 O7 P'   347.221 
HOH non-polymer   . WATER                                        ? 'H2 O'              18.015  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 CBR 1 1  1  CBR C A . n 
A 1 2 DG  2 2  2  DG  G A . n 
A 1 3 CBR 3 3  3  CBR C A . n 
A 1 4 DG  4 4  4  DG  G A . n 
A 1 5 CBR 5 5  5  CBR C A . n 
A 1 6 DG  6 6  6  DG  G A . n 
B 1 1 CBR 1 7  7  CBR C B . n 
B 1 2 DG  2 8  8  DG  G B . n 
B 1 3 CBR 3 9  9  CBR C B . n 
B 1 4 DG  4 10 10 DG  G B . n 
B 1 5 CBR 5 11 11 CBR C B . n 
B 1 6 DG  6 12 12 DG  G B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 HOH 1  14 14 HOH HOH A . 
C 2 HOH 2  16 16 HOH HOH A . 
C 2 HOH 3  17 17 HOH HOH A . 
C 2 HOH 4  19 19 HOH HOH A . 
C 2 HOH 5  20 20 HOH HOH A . 
C 2 HOH 6  22 22 HOH HOH A . 
C 2 HOH 7  24 24 HOH HOH A . 
C 2 HOH 8  25 25 HOH HOH A . 
C 2 HOH 9  28 28 HOH HOH A . 
C 2 HOH 10 29 29 HOH HOH A . 
C 2 HOH 11 30 30 HOH HOH A . 
C 2 HOH 12 32 32 HOH HOH A . 
C 2 HOH 13 33 33 HOH HOH A . 
C 2 HOH 14 35 35 HOH HOH A . 
C 2 HOH 15 36 36 HOH HOH A . 
C 2 HOH 16 37 37 HOH HOH A . 
C 2 HOH 17 38 38 HOH HOH A . 
C 2 HOH 18 40 40 HOH HOH A . 
C 2 HOH 19 41 41 HOH HOH A . 
C 2 HOH 20 42 42 HOH HOH A . 
C 2 HOH 21 43 43 HOH HOH A . 
C 2 HOH 22 44 44 HOH HOH A . 
C 2 HOH 23 45 45 HOH HOH A . 
C 2 HOH 24 46 46 HOH HOH A . 
C 2 HOH 25 47 47 HOH HOH A . 
C 2 HOH 26 48 48 HOH HOH A . 
C 2 HOH 27 49 49 HOH HOH A . 
C 2 HOH 28 51 51 HOH HOH A . 
C 2 HOH 29 52 52 HOH HOH A . 
C 2 HOH 30 53 53 HOH HOH A . 
C 2 HOH 31 56 56 HOH HOH A . 
C 2 HOH 32 58 58 HOH HOH A . 
C 2 HOH 33 59 59 HOH HOH A . 
C 2 HOH 34 61 61 HOH HOH A . 
C 2 HOH 35 63 63 HOH HOH A . 
C 2 HOH 36 64 64 HOH HOH A . 
C 2 HOH 37 65 65 HOH HOH A . 
C 2 HOH 38 67 67 HOH HOH A . 
C 2 HOH 39 68 68 HOH HOH A . 
C 2 HOH 40 70 70 HOH HOH A . 
C 2 HOH 41 71 71 HOH HOH A . 
D 2 HOH 1  13 13 HOH HOH B . 
D 2 HOH 2  15 15 HOH HOH B . 
D 2 HOH 3  18 18 HOH HOH B . 
D 2 HOH 4  21 21 HOH HOH B . 
D 2 HOH 5  23 23 HOH HOH B . 
D 2 HOH 6  26 26 HOH HOH B . 
D 2 HOH 7  27 27 HOH HOH B . 
D 2 HOH 8  31 31 HOH HOH B . 
D 2 HOH 9  34 34 HOH HOH B . 
D 2 HOH 10 39 39 HOH HOH B . 
D 2 HOH 11 50 50 HOH HOH B . 
D 2 HOH 12 54 54 HOH HOH B . 
D 2 HOH 13 55 55 HOH HOH B . 
D 2 HOH 14 57 57 HOH HOH B . 
D 2 HOH 15 60 60 HOH HOH B . 
D 2 HOH 16 62 62 HOH HOH B . 
D 2 HOH 17 66 66 HOH HOH B . 
D 2 HOH 18 69 69 HOH HOH B . 
D 2 HOH 19 72 72 HOH HOH B . 
D 2 HOH 20 73 73 HOH HOH B . 
# 
_software.name             NUCLSQ 
_software.classification   refinement 
_software.version          . 
_software.citation_id      ? 
_software.pdbx_ordinal     1 
# 
_cell.entry_id           1DN4 
_cell.length_a           18.010 
_cell.length_b           30.880 
_cell.length_c           44.760 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         1DN4 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                19 
# 
_exptl.entry_id          1DN4 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   ? 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      ? 
_exptl_crystal.density_percent_sol   ? 
_exptl_crystal.description           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION' 
_exptl_crystal_grow.temp            291.00 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              ? 
_exptl_crystal_grow.pdbx_details    'VAPOR DIFFUSION, temperature 291.00K' 
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 WATER           ? ? ? 
1 2 1 MPD             ? ? ? 
1 3 1 NACL            ? ? ? 
1 4 1 'NA CACODYLATE' ? ? ? 
1 5 2 WATER           ? ? ? 
1 6 2 MPD             ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           291.00 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               DIFFRACTOMETER 
_diffrn_detector.type                   'ENRAF-NONIUS CAD4' 
_diffrn_detector.pdbx_collection_date   ? 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   ? 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             ? 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   . 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      ? 
_diffrn_source.type                        ? 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.entry_id                     1DN4 
_reflns.observed_criterion_sigma_I   ? 
_reflns.observed_criterion_sigma_F   3.000 
_reflns.d_resolution_low             10.000 
_reflns.d_resolution_high            1.600 
_reflns.number_obs                   2919 
_reflns.number_all                   3195 
_reflns.percent_possible_obs         ? 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_refine.entry_id                                 1DN4 
_refine.ls_number_reflns_obs                     3195 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          3.000 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             10.000 
_refine.ls_d_res_high                            1.600 
_refine.ls_percent_reflns_obs                    ? 
_refine.ls_R_factor_obs                          0.1327 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       ? 
_refine.ls_R_factor_R_free                       ? 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_number_reflns_R_free                  ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            0.44 
_refine.occupancy_max                            1.0 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   240 
_refine_hist.pdbx_number_atoms_ligand         6 
_refine_hist.number_atoms_solvent             61 
_refine_hist.number_atoms_total               307 
_refine_hist.d_res_high                       1.600 
_refine_hist.d_res_low                        10.000 
# 
_database_PDB_matrix.entry_id          1DN4 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1DN4 
_struct.title                     
'SOLVATION OF THE LEFT-HANDED HEXAMER D(5BRC-G-5BRC-G-5BRC-G) IN CRYSTALS GROWN AT TWO TEMPERATURES' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1DN4 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'Z-DNA, DOUBLE HELIX, MODIFIED, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 2 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1DN4 
_struct_ref.pdbx_db_accession          1DN4 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1DN4 A 1 ? 6 ? 1DN4 1 ? 6  ? 1 6  
2 1 1DN4 B 1 ? 6 ? 1DN4 7 ? 12 ? 7 12 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id   1 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale both ? A CBR 1 "O3'" ? ? ? 1_555 A DG  2 P  ? ? A CBR 1  A DG  2  1_555 ? ? ? ? ? ? ?            1.724 ? ? 
covale2  covale both ? A DG  2 "O3'" ? ? ? 1_555 A CBR 3 P  ? ? A DG  2  A CBR 3  1_555 ? ? ? ? ? ? ?            1.582 ? ? 
covale3  covale both ? A CBR 3 "O3'" ? ? ? 1_555 A DG  4 P  ? ? A CBR 3  A DG  4  1_555 ? ? ? ? ? ? ?            1.601 ? ? 
covale4  covale both ? A DG  4 "O3'" ? ? ? 1_555 A CBR 5 P  ? ? A DG  4  A CBR 5  1_555 ? ? ? ? ? ? ?            1.636 ? ? 
covale5  covale both ? A CBR 5 "O3'" ? ? ? 1_555 A DG  6 P  ? ? A CBR 5  A DG  6  1_555 ? ? ? ? ? ? ?            1.567 ? ? 
covale6  covale both ? B CBR 1 "O3'" ? ? ? 1_555 B DG  2 P  ? ? B CBR 7  B DG  8  1_555 ? ? ? ? ? ? ?            1.651 ? ? 
covale7  covale both ? B DG  2 "O3'" ? ? ? 1_555 B CBR 3 P  ? ? B DG  8  B CBR 9  1_555 ? ? ? ? ? ? ?            1.631 ? ? 
covale8  covale both ? B CBR 3 "O3'" ? ? ? 1_555 B DG  4 P  ? ? B CBR 9  B DG  10 1_555 ? ? ? ? ? ? ?            1.502 ? ? 
covale9  covale both ? B DG  4 "O3'" ? ? ? 1_555 B CBR 5 P  ? ? B DG  10 B CBR 11 1_555 ? ? ? ? ? ? ?            1.602 ? ? 
covale10 covale both ? B CBR 5 "O3'" ? ? ? 1_555 B DG  6 P  ? ? B CBR 11 B DG  12 1_555 ? ? ? ? ? ? ?            1.632 ? ? 
hydrog1  hydrog ?    ? A CBR 1 N3    ? ? ? 1_555 B DG  6 N1 ? ? A CBR 1  B DG  12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ?    ? A CBR 1 N4    ? ? ? 1_555 B DG  6 O6 ? ? A CBR 1  B DG  12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ?    ? A CBR 1 O2    ? ? ? 1_555 B DG  6 N2 ? ? A CBR 1  B DG  12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ?    ? A DG  2 N1    ? ? ? 1_555 B CBR 5 N3 ? ? A DG  2  B CBR 11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ?    ? A DG  2 N2    ? ? ? 1_555 B CBR 5 O2 ? ? A DG  2  B CBR 11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ?    ? A DG  2 O6    ? ? ? 1_555 B CBR 5 N4 ? ? A DG  2  B CBR 11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ?    ? A CBR 3 N3    ? ? ? 1_555 B DG  4 N1 ? ? A CBR 3  B DG  10 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ?    ? A CBR 3 N4    ? ? ? 1_555 B DG  4 O6 ? ? A CBR 3  B DG  10 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ?    ? A CBR 3 O2    ? ? ? 1_555 B DG  4 N2 ? ? A CBR 3  B DG  10 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ?    ? A DG  4 N1    ? ? ? 1_555 B CBR 3 N3 ? ? A DG  4  B CBR 9  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ?    ? A DG  4 N2    ? ? ? 1_555 B CBR 3 O2 ? ? A DG  4  B CBR 9  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ?    ? A DG  4 O6    ? ? ? 1_555 B CBR 3 N4 ? ? A DG  4  B CBR 9  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ?    ? A CBR 5 N3    ? ? ? 1_555 B DG  2 N1 ? ? A CBR 5  B DG  8  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ?    ? A CBR 5 N4    ? ? ? 1_555 B DG  2 O6 ? ? A CBR 5  B DG  8  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ?    ? A CBR 5 O2    ? ? ? 1_555 B DG  2 N2 ? ? A CBR 5  B DG  8  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ?    ? A DG  6 N1    ? ? ? 1_555 B CBR 1 N3 ? ? A DG  6  B CBR 7  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ?    ? A DG  6 N2    ? ? ? 1_555 B CBR 1 O2 ? ? A DG  6  B CBR 7  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ?    ? A DG  6 O6    ? ? ? 1_555 B CBR 1 N4 ? ? A DG  6  B CBR 7  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
hydrog ? ? 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1  1 "O3'" A CBR 1  ? ? P     A DG 2  ? ? 1.724 1.607 0.117  0.012 Y 
2  1 "O4'" A DG  4  ? ? "C4'" A DG 4  ? ? 1.347 1.446 -0.099 0.010 N 
3  1 C6    A DG  4  ? ? N1    A DG 4  ? ? 1.347 1.391 -0.044 0.007 N 
4  1 P     A DG  6  ? ? OP1   A DG 6  ? ? 1.355 1.485 -0.130 0.017 N 
5  1 P     A DG  6  ? ? OP2   A DG 6  ? ? 1.628 1.485 0.143  0.017 N 
6  1 P     A DG  6  ? ? "O5'" A DG 6  ? ? 1.728 1.593 0.135  0.010 N 
7  1 N7    A DG  6  ? ? C8    A DG 6  ? ? 1.254 1.305 -0.051 0.006 N 
8  1 "O4'" B DG  8  ? ? "C4'" B DG 8  ? ? 1.345 1.446 -0.101 0.010 N 
9  1 C2    B DG  8  ? ? N3    B DG 8  ? ? 1.379 1.323 0.056  0.008 N 
10 1 N7    B DG  8  ? ? C8    B DG 8  ? ? 1.250 1.305 -0.055 0.006 N 
11 1 "O3'" B CBR 9  ? ? P     B DG 10 ? ? 1.502 1.607 -0.105 0.012 Y 
12 1 P     B DG  10 ? ? OP2   B DG 10 ? ? 1.381 1.485 -0.104 0.017 N 
13 1 P     B DG  10 ? ? "O5'" B DG 10 ? ? 1.689 1.593 0.096  0.010 N 
14 1 "O4'" B DG  10 ? ? "C1'" B DG 10 ? ? 1.495 1.420 0.075  0.011 N 
15 1 N3    B DG  10 ? ? C4    B DG 10 ? ? 1.395 1.350 0.045  0.007 N 
16 1 C6    B DG  10 ? ? N1    B DG 10 ? ? 1.345 1.391 -0.046 0.007 N 
17 1 C5    B DG  10 ? ? N7    B DG 10 ? ? 1.431 1.388 0.043  0.006 N 
18 1 N7    B DG  10 ? ? C8    B DG 10 ? ? 1.250 1.305 -0.055 0.006 N 
19 1 P     B DG  12 ? ? OP2   B DG 12 ? ? 1.358 1.485 -0.127 0.017 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "O5'" A DG  2  ? ? P     A DG  2  ? ? OP1   A DG  2  ? ? 95.56  105.70 -10.14 0.90 N 
2  1 "O5'" A DG  2  ? ? P     A DG  2  ? ? OP2   A DG  2  ? ? 118.41 110.70 7.71   1.20 N 
3  1 C6    A DG  2  ? ? N1    A DG  2  ? ? C2    A DG  2  ? ? 120.04 125.10 -5.06  0.60 N 
4  1 C2    A DG  2  ? ? N3    A DG  2  ? ? C4    A DG  2  ? ? 116.17 111.90 4.27   0.50 N 
5  1 C5    A DG  2  ? ? C6    A DG  2  ? ? N1    A DG  2  ? ? 115.35 111.50 3.85   0.50 N 
6  1 C4    A DG  2  ? ? C5    A DG  2  ? ? N7    A DG  2  ? ? 107.84 110.80 -2.96  0.40 N 
7  1 N3    A DG  2  ? ? C2    A DG  2  ? ? N2    A DG  2  ? ? 124.22 119.90 4.32   0.70 N 
8  1 N1    A DG  2  ? ? C6    A DG  2  ? ? O6    A DG  2  ? ? 114.19 119.90 -5.71  0.60 N 
9  1 "C3'" A CBR 3  ? ? "O3'" A CBR 3  ? ? P     A DG  4  ? ? 128.97 119.70 9.27   1.20 Y 
10 1 N1    A DG  4  ? ? C2    A DG  4  ? ? N3    A DG  4  ? ? 117.69 123.90 -6.21  0.60 N 
11 1 C2    A DG  4  ? ? N3    A DG  4  ? ? C4    A DG  4  ? ? 119.61 111.90 7.71   0.50 N 
12 1 N3    A DG  4  ? ? C4    A DG  4  ? ? C5    A DG  4  ? ? 123.94 128.60 -4.66  0.50 N 
13 1 C5    A DG  4  ? ? C6    A DG  4  ? ? N1    A DG  4  ? ? 114.90 111.50 3.40   0.50 N 
14 1 N3    A DG  4  ? ? C4    A DG  4  ? ? N9    A DG  4  ? ? 131.93 126.00 5.93   0.60 N 
15 1 C5    A DG  4  ? ? C6    A DG  4  ? ? O6    A DG  4  ? ? 123.45 128.60 -5.15  0.60 N 
16 1 "O3'" A CBR 5  ? ? P     A DG  6  ? ? OP1   A DG  6  ? ? 129.23 110.50 18.73  1.10 Y 
17 1 "O5'" A DG  6  ? ? P     A DG  6  ? ? OP2   A DG  6  ? ? 96.95  105.70 -8.75  0.90 N 
18 1 "O5'" A DG  6  ? ? "C5'" A DG  6  ? ? "C4'" A DG  6  ? ? 99.81  109.40 -9.59  0.80 N 
19 1 "O4'" A DG  6  ? ? "C4'" A DG  6  ? ? "C3'" A DG  6  ? ? 114.02 106.00 8.02   0.60 N 
20 1 "C1'" A DG  6  ? ? "O4'" A DG  6  ? ? "C4'" A DG  6  ? ? 100.84 110.10 -9.26  1.00 N 
21 1 "O4'" A DG  6  ? ? "C1'" A DG  6  ? ? "C2'" A DG  6  ? ? 112.04 106.80 5.24   0.50 N 
22 1 C6    A DG  6  ? ? N1    A DG  6  ? ? C2    A DG  6  ? ? 117.98 125.10 -7.12  0.60 N 
23 1 N1    A DG  6  ? ? C2    A DG  6  ? ? N3    A DG  6  ? ? 127.99 123.90 4.09   0.60 N 
24 1 N3    A DG  6  ? ? C4    A DG  6  ? ? C5    A DG  6  ? ? 124.90 128.60 -3.70  0.50 N 
25 1 C5    A DG  6  ? ? C6    A DG  6  ? ? N1    A DG  6  ? ? 114.79 111.50 3.29   0.50 N 
26 1 N3    A DG  6  ? ? C4    A DG  6  ? ? N9    A DG  6  ? ? 130.39 126.00 4.39   0.60 N 
27 1 C5    A DG  6  ? ? C6    A DG  6  ? ? O6    A DG  6  ? ? 124.63 128.60 -3.97  0.60 N 
28 1 "O5'" B DG  8  ? ? P     B DG  8  ? ? OP2   B DG  8  ? ? 118.32 110.70 7.62   1.20 N 
29 1 N1    B DG  8  ? ? C2    B DG  8  ? ? N3    B DG  8  ? ? 120.00 123.90 -3.90  0.60 N 
30 1 N9    B DG  8  ? ? C4    B DG  8  ? ? C5    B DG  8  ? ? 101.73 105.40 -3.67  0.40 N 
31 1 N3    B DG  8  ? ? C4    B DG  8  ? ? N9    B DG  8  ? ? 131.15 126.00 5.15   0.60 N 
32 1 N1    B DG  8  ? ? C6    B DG  8  ? ? O6    B DG  8  ? ? 124.68 119.90 4.78   0.60 N 
33 1 C5    B DG  8  ? ? C6    B DG  8  ? ? O6    B DG  8  ? ? 123.34 128.60 -5.26  0.60 N 
34 1 "C3'" B DG  8  ? ? "O3'" B DG  8  ? ? P     B CBR 9  ? ? 134.07 119.70 14.37  1.20 Y 
35 1 OP1   B DG  10 ? ? P     B DG  10 ? ? OP2   B DG  10 ? ? 109.25 119.60 -10.35 1.50 N 
36 1 "O5'" B DG  10 ? ? "C5'" B DG  10 ? ? "C4'" B DG  10 ? ? 103.09 109.40 -6.31  0.80 N 
37 1 C2    B DG  10 ? ? N3    B DG  10 ? ? C4    B DG  10 ? ? 107.18 111.90 -4.72  0.50 N 
38 1 N7    B DG  10 ? ? C8    B DG  10 ? ? N9    B DG  10 ? ? 117.95 113.10 4.85   0.50 N 
39 1 C8    B DG  10 ? ? N9    B DG  10 ? ? C4    B DG  10 ? ? 102.35 106.40 -4.05  0.40 N 
40 1 N1    B DG  10 ? ? C2    B DG  10 ? ? N2    B DG  10 ? ? 123.58 116.20 7.38   0.90 N 
41 1 N3    B DG  10 ? ? C2    B DG  10 ? ? N2    B DG  10 ? ? 109.55 119.90 -10.35 0.70 N 
42 1 "C3'" B DG  10 ? ? "O3'" B DG  10 ? ? P     B CBR 11 ? ? 134.22 119.70 14.52  1.20 Y 
43 1 "C3'" B CBR 11 ? ? "O3'" B CBR 11 ? ? P     B DG  12 ? ? 108.34 119.70 -11.36 1.20 Y 
44 1 OP1   B DG  12 ? ? P     B DG  12 ? ? OP2   B DG  12 ? ? 135.44 119.60 15.84  1.50 N 
45 1 P     B DG  12 ? ? "O5'" B DG  12 ? ? "C5'" B DG  12 ? ? 107.62 120.90 -13.28 1.60 N 
46 1 C4    B DG  12 ? ? C5    B DG  12 ? ? N7    B DG  12 ? ? 105.07 110.80 -5.73  0.40 N 
47 1 C5    B DG  12 ? ? N7    B DG  12 ? ? C8    B DG  12 ? ? 110.27 104.30 5.97   0.50 N 
48 1 N7    B DG  12 ? ? C8    B DG  12 ? ? N9    B DG  12 ? ? 107.54 113.10 -5.56  0.50 N 
49 1 C8    B DG  12 ? ? N9    B DG  12 ? ? C4    B DG  12 ? ? 109.13 106.40 2.73   0.40 N 
# 
loop_
_pdbx_struct_mod_residue.id 
_pdbx_struct_mod_residue.label_asym_id 
_pdbx_struct_mod_residue.label_comp_id 
_pdbx_struct_mod_residue.label_seq_id 
_pdbx_struct_mod_residue.auth_asym_id 
_pdbx_struct_mod_residue.auth_comp_id 
_pdbx_struct_mod_residue.auth_seq_id 
_pdbx_struct_mod_residue.PDB_ins_code 
_pdbx_struct_mod_residue.parent_comp_id 
_pdbx_struct_mod_residue.details 
1 A CBR 1 A CBR 1  ? DC ? 
2 A CBR 3 A CBR 3  ? DC ? 
3 A CBR 5 A CBR 5  ? DC ? 
4 B CBR 1 B CBR 7  ? DC ? 
5 B CBR 3 B CBR 9  ? DC ? 
6 B CBR 5 B CBR 11 ? DC ? 
# 
loop_
_refine_B_iso.class 
_refine_B_iso.details 
_refine_B_iso.treatment 
_refine_B_iso.pdbx_refine_id 
'ALL ATOMS'    TR isotropic 'X-RAY DIFFRACTION' 
'ALL SOLVENTS' TR isotropic 'X-RAY DIFFRACTION' 
# 
loop_
_refine_occupancy.class 
_refine_occupancy.treatment 
_refine_occupancy.pdbx_refine_id 
'ALL ATOMS'    fix 'X-RAY DIFFRACTION' 
'ALL SOLVENTS' ref 'X-RAY DIFFRACTION' 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
CBR BR     BR N N 1  
CBR P      P  N N 2  
CBR OP1    O  N N 3  
CBR OP2    O  N N 4  
CBR "O5'"  O  N N 5  
CBR N1     N  N N 6  
CBR C6     C  N N 7  
CBR C2     C  N N 8  
CBR O2     O  N N 9  
CBR N3     N  N N 10 
CBR C4     C  N N 11 
CBR N4     N  N N 12 
CBR C5     C  N N 13 
CBR "C2'"  C  N N 14 
CBR "C5'"  C  N N 15 
CBR "C4'"  C  N R 16 
CBR "O4'"  O  N N 17 
CBR "C1'"  C  N R 18 
CBR "C3'"  C  N S 19 
CBR "O3'"  O  N N 20 
CBR OP3    O  N N 21 
CBR HOP2   H  N N 22 
CBR H6     H  N N 23 
CBR H41    H  N N 24 
CBR H42    H  N N 25 
CBR "H2'"  H  N N 26 
CBR "H2''" H  N N 27 
CBR "H5'"  H  N N 28 
CBR "H5''" H  N N 29 
CBR "H4'"  H  N N 30 
CBR "H1'"  H  N N 31 
CBR "H3'"  H  N N 32 
CBR "HO3'" H  N N 33 
CBR HOP3   H  N N 34 
DG  OP3    O  N N 35 
DG  P      P  N N 36 
DG  OP1    O  N N 37 
DG  OP2    O  N N 38 
DG  "O5'"  O  N N 39 
DG  "C5'"  C  N N 40 
DG  "C4'"  C  N R 41 
DG  "O4'"  O  N N 42 
DG  "C3'"  C  N S 43 
DG  "O3'"  O  N N 44 
DG  "C2'"  C  N N 45 
DG  "C1'"  C  N R 46 
DG  N9     N  Y N 47 
DG  C8     C  Y N 48 
DG  N7     N  Y N 49 
DG  C5     C  Y N 50 
DG  C6     C  N N 51 
DG  O6     O  N N 52 
DG  N1     N  N N 53 
DG  C2     C  N N 54 
DG  N2     N  N N 55 
DG  N3     N  N N 56 
DG  C4     C  Y N 57 
DG  HOP3   H  N N 58 
DG  HOP2   H  N N 59 
DG  "H5'"  H  N N 60 
DG  "H5''" H  N N 61 
DG  "H4'"  H  N N 62 
DG  "H3'"  H  N N 63 
DG  "HO3'" H  N N 64 
DG  "H2'"  H  N N 65 
DG  "H2''" H  N N 66 
DG  "H1'"  H  N N 67 
DG  H8     H  N N 68 
DG  H1     H  N N 69 
DG  H21    H  N N 70 
DG  H22    H  N N 71 
HOH O      O  N N 72 
HOH H1     H  N N 73 
HOH H2     H  N N 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
CBR BR    C5     sing N N 1  
CBR P     OP1    doub N N 2  
CBR P     OP2    sing N N 3  
CBR P     "O5'"  sing N N 4  
CBR P     OP3    sing N N 5  
CBR OP2   HOP2   sing N N 6  
CBR "O5'" "C5'"  sing N N 7  
CBR N1    C6     sing N N 8  
CBR N1    C2     sing N N 9  
CBR N1    "C1'"  sing N N 10 
CBR C6    C5     doub N N 11 
CBR C6    H6     sing N N 12 
CBR C2    O2     doub N N 13 
CBR C2    N3     sing N N 14 
CBR N3    C4     doub N N 15 
CBR C4    N4     sing N N 16 
CBR C4    C5     sing N N 17 
CBR N4    H41    sing N N 18 
CBR N4    H42    sing N N 19 
CBR "C2'" "C1'"  sing N N 20 
CBR "C2'" "C3'"  sing N N 21 
CBR "C2'" "H2'"  sing N N 22 
CBR "C2'" "H2''" sing N N 23 
CBR "C5'" "C4'"  sing N N 24 
CBR "C5'" "H5'"  sing N N 25 
CBR "C5'" "H5''" sing N N 26 
CBR "C4'" "O4'"  sing N N 27 
CBR "C4'" "C3'"  sing N N 28 
CBR "C4'" "H4'"  sing N N 29 
CBR "O4'" "C1'"  sing N N 30 
CBR "C1'" "H1'"  sing N N 31 
CBR "C3'" "O3'"  sing N N 32 
CBR "C3'" "H3'"  sing N N 33 
CBR "O3'" "HO3'" sing N N 34 
CBR OP3   HOP3   sing N N 35 
DG  OP3   P      sing N N 36 
DG  OP3   HOP3   sing N N 37 
DG  P     OP1    doub N N 38 
DG  P     OP2    sing N N 39 
DG  P     "O5'"  sing N N 40 
DG  OP2   HOP2   sing N N 41 
DG  "O5'" "C5'"  sing N N 42 
DG  "C5'" "C4'"  sing N N 43 
DG  "C5'" "H5'"  sing N N 44 
DG  "C5'" "H5''" sing N N 45 
DG  "C4'" "O4'"  sing N N 46 
DG  "C4'" "C3'"  sing N N 47 
DG  "C4'" "H4'"  sing N N 48 
DG  "O4'" "C1'"  sing N N 49 
DG  "C3'" "O3'"  sing N N 50 
DG  "C3'" "C2'"  sing N N 51 
DG  "C3'" "H3'"  sing N N 52 
DG  "O3'" "HO3'" sing N N 53 
DG  "C2'" "C1'"  sing N N 54 
DG  "C2'" "H2'"  sing N N 55 
DG  "C2'" "H2''" sing N N 56 
DG  "C1'" N9     sing N N 57 
DG  "C1'" "H1'"  sing N N 58 
DG  N9    C8     sing Y N 59 
DG  N9    C4     sing Y N 60 
DG  C8    N7     doub Y N 61 
DG  C8    H8     sing N N 62 
DG  N7    C5     sing Y N 63 
DG  C5    C6     sing N N 64 
DG  C5    C4     doub Y N 65 
DG  C6    O6     doub N N 66 
DG  C6    N1     sing N N 67 
DG  N1    C2     sing N N 68 
DG  N1    H1     sing N N 69 
DG  C2    N2     sing N N 70 
DG  C2    N3     doub N N 71 
DG  N2    H21    sing N N 72 
DG  N2    H22    sing N N 73 
DG  N3    C4     sing N N 74 
HOH O     H1     sing N N 75 
HOH O     H2     sing N N 76 
# 
_ndb_struct_conf_na.entry_id   1DN4 
_ndb_struct_conf_na.feature    'z-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A CBR 1 1_555 B DG  6 1_555 -0.175 0.100  -0.190 14.210  2.881  1.617 1 A_CBR1:DG12_B A 1 ? B 12 ? 19 1 
1 A DG  2 1_555 B CBR 5 1_555 0.368  -0.117 0.570  1.411   3.734  1.933 2 A_DG2:CBR11_B A 2 ? B 11 ? 19 1 
1 A CBR 3 1_555 B DG  4 1_555 -0.246 -0.057 -0.010 -2.619  -4.437 1.453 3 A_CBR3:DG10_B A 3 ? B 10 ? 19 1 
1 A DG  4 1_555 B CBR 3 1_555 0.413  -0.174 -0.088 -12.785 -1.705 0.206 4 A_DG4:CBR9_B  A 4 ? B 9  ? 19 1 
1 A CBR 5 1_555 B DG  2 1_555 -0.466 -0.106 0.173  6.284   3.421  0.830 5 A_CBR5:DG8_B  A 5 ? B 8  ? 19 1 
1 A DG  6 1_555 B CBR 1 1_555 0.250  -0.219 0.092  -2.341  -3.295 1.085 6 A_DG6:CBR7_B  A 6 ? B 7  ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A CBR 1 1_555 B DG  6 1_555 A DG  2 1_555 B CBR 5 1_555 0.016  5.711  4.006 -5.043 -0.263 -11.685 -25.387 -7.182 3.804 1.221  
-23.392 -12.726 1 AA_CBR1DG2:CBR11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 
1 A DG  2 1_555 B CBR 5 1_555 A CBR 3 1_555 B DG  4 1_555 -0.019 -1.144 3.633 3.777  -3.225 -48.317 1.664   0.297  3.546 3.928  
4.600   -48.556 2 AA_DG2CBR3:DG10CBR11_BB A 2 ? B 11 ? A 3 ? B 10 ? 
1 A CBR 3 1_555 B DG  4 1_555 A DG  4 1_555 B CBR 3 1_555 0.034  5.350  3.658 0.031  -2.312 -8.882  -26.616 0.304  4.885 14.606 
0.194   -9.178  3 AA_CBR3DG4:CBR9DG10_BB  A 3 ? B 10 ? A 4 ? B 9  ? 
1 A DG  4 1_555 B CBR 3 1_555 A CBR 5 1_555 B DG  2 1_555 -0.231 -1.105 3.087 0.401  -4.137 -50.307 1.569   -0.244 2.995 4.856  
0.471   -50.467 4 AA_DG4CBR5:DG8CBR9_BB   A 4 ? B 9  ? A 5 ? B 8  ? 
1 A CBR 5 1_555 B DG  2 1_555 A DG  6 1_555 B CBR 1 1_555 -0.015 5.544  3.789 1.222  -0.673 -11.668 -25.980 1.923  4.081 3.295  
5.981   -11.751 5 AA_CBR5DG6:CBR7DG8_BB   A 5 ? B 8  ? A 6 ? B 7  ? 
# 
_atom_sites.entry_id                    1DN4 
_atom_sites.fract_transf_matrix[1][1]   0.055525 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.032383 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.022341 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
_atom_sites_footnote.id     2 
_atom_sites_footnote.text   'ATOM HOH 1 IS PROBABLY A SODIUM ION.' 
# 
loop_
_atom_type.symbol 
BR 
C  
N  
O  
P  
# 
loop_