data_1DN5
# 
_entry.id   1DN5 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.385 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1DN5         pdb_00001dn5 10.2210/pdb1dn5/pdb 
RCSB  ZDFB05       ?            ?                   
WWPDB D_1000172850 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1987-04-16 
2 'Structure model' 1 1 2008-05-22 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2018-01-24 
5 'Structure model' 1 4 2018-04-18 
6 'Structure model' 1 5 2024-02-07 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Experimental preparation'  
4 5 'Structure model' 'Data collection'           
5 6 'Structure model' 'Data collection'           
6 6 'Structure model' 'Database references'       
7 6 'Structure model' 'Derived calculations'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' exptl_crystal_grow 
2 5 'Structure model' diffrn_detector    
3 6 'Structure model' chem_comp_atom     
4 6 'Structure model' chem_comp_bond     
5 6 'Structure model' database_2         
6 6 'Structure model' struct_conn        
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 4 'Structure model' '_exptl_crystal_grow.temp'            
2 5 'Structure model' '_diffrn_detector.detector'           
3 6 'Structure model' '_database_2.pdbx_DOI'                
4 6 'Structure model' '_database_2.pdbx_database_accession' 
5 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1DN5 
_pdbx_database_status.recvd_initial_deposition_date   1986-12-01 
_pdbx_database_status.deposit_site                    BNL 
_pdbx_database_status.process_site                    BNL 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Chevrier, B.' 1 
'Dock, A.C.'   2 
'Hartmann, B.' 3 
'Leng, M.'     4 
'Moras, D.'    5 
'Thuong, M.T.' 6 
'Westhof, E.'  7 
# 
_citation.id                        primary 
_citation.title                     
'Solvation of the left-handed hexamer d(5BrC-G-5BrC-G-5 BrC-G) in crystals grown at two temperatures.' 
_citation.journal_abbrev            J.Mol.Biol. 
_citation.journal_volume            188 
_citation.page_first                707 
_citation.page_last                 719 
_citation.year                      1986 
_citation.journal_id_ASTM           JMOBAK 
_citation.country                   UK 
_citation.journal_id_ISSN           0022-2836 
_citation.journal_id_CSD            0070 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   3735433 
_citation.pdbx_database_id_DOI      '10.1016/S0022-2836(86)80016-X' 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Chevrier, B.' 1 ? 
primary 'Dock, A.C.'   2 ? 
primary 'Hartmann, B.' 3 ? 
primary 'Leng, M.'     4 ? 
primary 'Moras, D.'    5 ? 
primary 'Thuong, M.T.' 6 ? 
primary 'Westhof, E.'  7 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer syn 
;DNA (5'-D(*(CBR)P*GP*(CBR)P*GP*(CBR)P*G)-3')
;
2046.893 2  ? ? ? ? 
2 water   nat water                                          18.015   83 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   yes 
_entity_poly.pdbx_seq_one_letter_code       '(CBR)(DG)(CBR)(DG)(CBR)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGCGCG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
_pdbx_entity_nonpoly.entity_id   2 
_pdbx_entity_nonpoly.name        water 
_pdbx_entity_nonpoly.comp_id     HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 CBR n 
1 2 DG  n 
1 3 CBR n 
1 4 DG  n 
1 5 CBR n 
1 6 DG  n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
CBR 'DNA linking' n "5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 Br N3 O7 P' 386.093 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"         ? 'C10 H14 N5 O7 P'   347.221 
HOH non-polymer   . WATER                                        ? 'H2 O'              18.015  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 CBR 1 1  1  CBR C A . n 
A 1 2 DG  2 2  2  DG  G A . n 
A 1 3 CBR 3 3  3  CBR C A . n 
A 1 4 DG  4 4  4  DG  G A . n 
A 1 5 CBR 5 5  5  CBR C A . n 
A 1 6 DG  6 6  6  DG  G A . n 
B 1 1 CBR 1 7  7  CBR C B . n 
B 1 2 DG  2 8  8  DG  G B . n 
B 1 3 CBR 3 9  9  CBR C B . n 
B 1 4 DG  4 10 10 DG  G B . n 
B 1 5 CBR 5 11 11 CBR C B . n 
B 1 6 DG  6 12 12 DG  G B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 HOH 1  13 13 HOH HOH A . 
C 2 HOH 2  15 15 HOH HOH A . 
C 2 HOH 3  17 17 HOH HOH A . 
C 2 HOH 4  18 18 HOH HOH A . 
C 2 HOH 5  19 19 HOH HOH A . 
C 2 HOH 6  22 22 HOH HOH A . 
C 2 HOH 7  23 23 HOH HOH A . 
C 2 HOH 8  25 25 HOH HOH A . 
C 2 HOH 9  32 32 HOH HOH A . 
C 2 HOH 10 35 35 HOH HOH A . 
C 2 HOH 11 38 38 HOH HOH A . 
C 2 HOH 12 39 39 HOH HOH A . 
C 2 HOH 13 40 40 HOH HOH A . 
C 2 HOH 14 41 41 HOH HOH A . 
C 2 HOH 15 42 42 HOH HOH A . 
C 2 HOH 16 45 45 HOH HOH A . 
C 2 HOH 17 47 47 HOH HOH A . 
C 2 HOH 18 48 48 HOH HOH A . 
C 2 HOH 19 51 51 HOH HOH A . 
C 2 HOH 20 52 52 HOH HOH A . 
C 2 HOH 21 53 53 HOH HOH A . 
C 2 HOH 22 54 54 HOH HOH A . 
C 2 HOH 23 56 56 HOH HOH A . 
C 2 HOH 24 57 57 HOH HOH A . 
C 2 HOH 25 58 58 HOH HOH A . 
C 2 HOH 26 60 60 HOH HOH A . 
C 2 HOH 27 62 62 HOH HOH A . 
C 2 HOH 28 64 64 HOH HOH A . 
C 2 HOH 29 65 65 HOH HOH A . 
C 2 HOH 30 66 66 HOH HOH A . 
C 2 HOH 31 69 69 HOH HOH A . 
C 2 HOH 32 72 72 HOH HOH A . 
C 2 HOH 33 73 73 HOH HOH A . 
C 2 HOH 34 75 75 HOH HOH A . 
C 2 HOH 35 77 77 HOH HOH A . 
C 2 HOH 36 79 79 HOH HOH A . 
C 2 HOH 37 81 81 HOH HOH A . 
C 2 HOH 38 82 82 HOH HOH A . 
C 2 HOH 39 83 83 HOH HOH A . 
C 2 HOH 40 84 84 HOH HOH A . 
C 2 HOH 41 85 85 HOH HOH A . 
C 2 HOH 42 86 86 HOH HOH A . 
C 2 HOH 43 87 87 HOH HOH A . 
C 2 HOH 44 88 88 HOH HOH A . 
C 2 HOH 45 89 89 HOH HOH A . 
C 2 HOH 46 90 90 HOH HOH A . 
C 2 HOH 47 91 91 HOH HOH A . 
C 2 HOH 48 92 92 HOH HOH A . 
C 2 HOH 49 94 94 HOH HOH A . 
C 2 HOH 50 95 95 HOH HOH A . 
D 2 HOH 1  14 14 HOH HOH B . 
D 2 HOH 2  16 16 HOH HOH B . 
D 2 HOH 3  20 20 HOH HOH B . 
D 2 HOH 4  21 21 HOH HOH B . 
D 2 HOH 5  24 24 HOH HOH B . 
D 2 HOH 6  26 26 HOH HOH B . 
D 2 HOH 7  27 27 HOH HOH B . 
D 2 HOH 8  28 28 HOH HOH B . 
D 2 HOH 9  29 29 HOH HOH B . 
D 2 HOH 10 30 30 HOH HOH B . 
D 2 HOH 11 31 31 HOH HOH B . 
D 2 HOH 12 33 33 HOH HOH B . 
D 2 HOH 13 34 34 HOH HOH B . 
D 2 HOH 14 36 36 HOH HOH B . 
D 2 HOH 15 37 37 HOH HOH B . 
D 2 HOH 16 43 43 HOH HOH B . 
D 2 HOH 17 44 44 HOH HOH B . 
D 2 HOH 18 46 46 HOH HOH B . 
D 2 HOH 19 49 49 HOH HOH B . 
D 2 HOH 20 50 50 HOH HOH B . 
D 2 HOH 21 55 55 HOH HOH B . 
D 2 HOH 22 59 59 HOH HOH B . 
D 2 HOH 23 61 61 HOH HOH B . 
D 2 HOH 24 63 63 HOH HOH B . 
D 2 HOH 25 67 67 HOH HOH B . 
D 2 HOH 26 68 68 HOH HOH B . 
D 2 HOH 27 70 70 HOH HOH B . 
D 2 HOH 28 71 71 HOH HOH B . 
D 2 HOH 29 74 74 HOH HOH B . 
D 2 HOH 30 76 76 HOH HOH B . 
D 2 HOH 31 78 78 HOH HOH B . 
D 2 HOH 32 80 80 HOH HOH B . 
D 2 HOH 33 93 93 HOH HOH B . 
# 
_software.name             NUCLSQ 
_software.classification   refinement 
_software.version          . 
_software.citation_id      ? 
_software.pdbx_ordinal     1 
_software.date             ? 
_software.type             ? 
_software.location         ? 
_software.language         ? 
# 
_cell.entry_id           1DN5 
_cell.length_a           17.930 
_cell.length_b           30.830 
_cell.length_c           44.730 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         1DN5 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                19 
# 
_exptl.entry_id          1DN5 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   ? 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      1.51 
_exptl_crystal.density_percent_sol   18.54 
_exptl_crystal.description           ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION' 
_exptl_crystal_grow.temp            291.15 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              ? 
_exptl_crystal_grow.pdbx_details    'VAPOR DIFFUSION, temperature 310.00K' 
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 WATER           ? ? ? 
1 2 1 MPD             ? ? ? 
1 3 1 'NA CACODYLATE' ? ? ? 
1 4 1 NACL            ? ? ? 
1 5 2 WATER           ? ? ? 
1 6 2 MPD             ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           310.00 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               DIFFRACTOMETER 
_diffrn_detector.type                   'ENRAF-NONIUS CAD4' 
_diffrn_detector.pdbx_collection_date   ? 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   ? 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             ? 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   . 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      ? 
_diffrn_source.type                        ? 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.entry_id                     1DN5 
_reflns.observed_criterion_sigma_I   ? 
_reflns.observed_criterion_sigma_F   2.000 
_reflns.d_resolution_low             10.000 
_reflns.d_resolution_high            1.400 
_reflns.number_obs                   3765 
_reflns.number_all                   5470 
_reflns.percent_possible_obs         ? 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_refine.entry_id                                 1DN5 
_refine.ls_number_reflns_obs                     3765 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          2.000 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             10.000 
_refine.ls_d_res_high                            1.400 
_refine.ls_percent_reflns_obs                    ? 
_refine.ls_R_factor_obs                          0.1247 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       ? 
_refine.ls_R_factor_R_free                       ? 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_number_reflns_R_free                  ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            0.47 
_refine.occupancy_max                            1.00 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   240 
_refine_hist.pdbx_number_atoms_ligand         6 
_refine_hist.number_atoms_solvent             83 
_refine_hist.number_atoms_total               329 
_refine_hist.d_res_high                       1.400 
_refine_hist.d_res_low                        10.000 
# 
_database_PDB_matrix.entry_id          1DN5 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1DN5 
_struct.title                     
'SOLVATION OF THE LEFT-HANDED HEXAMER D(5BRC-G-5BRC-G-5BRC-G) IN CRYSTALS GROWN AT TWO TEMPERATURES' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1DN5 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'Z-DNA, DOUBLE HELIX, MODIFIED, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 2 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1DN5 
_struct_ref.pdbx_db_accession          1DN5 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1DN5 A 1 ? 6 ? 1DN5 1 ? 6  ? 1 6  
2 1 1DN5 B 1 ? 6 ? 1DN5 7 ? 12 ? 7 12 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale both ? A CBR 1 "O3'" ? ? ? 1_555 A DG  2 P  ? ? A CBR 1  A DG  2  1_555 ? ? ? ? ? ? ?            1.710 ? ? 
covale2  covale both ? A DG  2 "O3'" ? ? ? 1_555 A CBR 3 P  ? ? A DG  2  A CBR 3  1_555 ? ? ? ? ? ? ?            1.666 ? ? 
covale3  covale both ? A CBR 3 "O3'" ? ? ? 1_555 A DG  4 P  ? ? A CBR 3  A DG  4  1_555 ? ? ? ? ? ? ?            1.654 ? ? 
covale4  covale both ? A DG  4 "O3'" ? ? ? 1_555 A CBR 5 P  ? ? A DG  4  A CBR 5  1_555 ? ? ? ? ? ? ?            1.588 ? ? 
covale5  covale both ? A CBR 5 "O3'" ? ? ? 1_555 A DG  6 P  ? ? A CBR 5  A DG  6  1_555 ? ? ? ? ? ? ?            1.584 ? ? 
covale6  covale both ? B CBR 1 "O3'" ? ? ? 1_555 B DG  2 P  ? ? B CBR 7  B DG  8  1_555 ? ? ? ? ? ? ?            1.615 ? ? 
covale7  covale both ? B DG  2 "O3'" ? ? ? 1_555 B CBR 3 P  ? ? B DG  8  B CBR 9  1_555 ? ? ? ? ? ? ?            1.591 ? ? 
covale8  covale both ? B CBR 3 "O3'" ? ? ? 1_555 B DG  4 P  ? ? B CBR 9  B DG  10 1_555 ? ? ? ? ? ? ?            1.563 ? ? 
covale9  covale both ? B DG  4 "O3'" ? ? ? 1_555 B CBR 5 P  ? ? B DG  10 B CBR 11 1_555 ? ? ? ? ? ? ?            1.478 ? ? 
covale10 covale both ? B CBR 5 "O3'" ? ? ? 1_555 B DG  6 P  ? ? B CBR 11 B DG  12 1_555 ? ? ? ? ? ? ?            1.690 ? ? 
hydrog1  hydrog ?    ? A CBR 1 N3    ? ? ? 1_555 B DG  6 N1 ? ? A CBR 1  B DG  12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ?    ? A CBR 1 N4    ? ? ? 1_555 B DG  6 O6 ? ? A CBR 1  B DG  12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ?    ? A CBR 1 O2    ? ? ? 1_555 B DG  6 N2 ? ? A CBR 1  B DG  12 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ?    ? A DG  2 N1    ? ? ? 1_555 B CBR 5 N3 ? ? A DG  2  B CBR 11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ?    ? A DG  2 N2    ? ? ? 1_555 B CBR 5 O2 ? ? A DG  2  B CBR 11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ?    ? A DG  2 O6    ? ? ? 1_555 B CBR 5 N4 ? ? A DG  2  B CBR 11 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ?    ? A CBR 3 N3    ? ? ? 1_555 B DG  4 N1 ? ? A CBR 3  B DG  10 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ?    ? A CBR 3 N4    ? ? ? 1_555 B DG  4 O6 ? ? A CBR 3  B DG  10 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ?    ? A CBR 3 O2    ? ? ? 1_555 B DG  4 N2 ? ? A CBR 3  B DG  10 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ?    ? A DG  4 N1    ? ? ? 1_555 B CBR 3 N3 ? ? A DG  4  B CBR 9  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ?    ? A DG  4 N2    ? ? ? 1_555 B CBR 3 O2 ? ? A DG  4  B CBR 9  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ?    ? A DG  4 O6    ? ? ? 1_555 B CBR 3 N4 ? ? A DG  4  B CBR 9  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ?    ? A CBR 5 N3    ? ? ? 1_555 B DG  2 N1 ? ? A CBR 5  B DG  8  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ?    ? A CBR 5 N4    ? ? ? 1_555 B DG  2 O6 ? ? A CBR 5  B DG  8  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ?    ? A CBR 5 O2    ? ? ? 1_555 B DG  2 N2 ? ? A CBR 5  B DG  8  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ?    ? A DG  6 N1    ? ? ? 1_555 B CBR 1 N3 ? ? A DG  6  B CBR 7  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ?    ? A DG  6 N2    ? ? ? 1_555 B CBR 1 O2 ? ? A DG  6  B CBR 7  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ?    ? A DG  6 O6    ? ? ? 1_555 B CBR 1 N4 ? ? A DG  6  B CBR 7  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
hydrog ? ? 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1  1 "O3'" A CBR 1  ? ? P     A DG  2  ? ? 1.710 1.607 0.103  0.012 Y 
2  1 C5    A DG  2  ? ? N7    A DG  2  ? ? 1.426 1.388 0.038  0.006 N 
3  1 "O4'" A DG  4  ? ? "C4'" A DG  4  ? ? 1.359 1.446 -0.087 0.010 N 
4  1 C2    A DG  4  ? ? N3    A DG  4  ? ? 1.385 1.323 0.062  0.008 N 
5  1 C6    A DG  4  ? ? N1    A DG  4  ? ? 1.345 1.391 -0.046 0.007 N 
6  1 P     A DG  6  ? ? "O5'" A DG  6  ? ? 1.674 1.593 0.081  0.010 N 
7  1 C4    A DG  6  ? ? C5    A DG  6  ? ? 1.331 1.379 -0.048 0.007 N 
8  1 C5    A DG  6  ? ? N7    A DG  6  ? ? 1.463 1.388 0.075  0.006 N 
9  1 P     B DG  8  ? ? OP2   B DG  8  ? ? 1.373 1.485 -0.112 0.017 N 
10 1 "O4'" B DG  8  ? ? "C4'" B DG  8  ? ? 1.364 1.446 -0.082 0.010 N 
11 1 C2    B DG  8  ? ? N3    B DG  8  ? ? 1.379 1.323 0.056  0.008 N 
12 1 C8    B DG  8  ? ? N9    B DG  8  ? ? 1.329 1.374 -0.045 0.007 N 
13 1 P     B DG  10 ? ? "O5'" B DG  10 ? ? 1.653 1.593 0.060  0.010 N 
14 1 "C3'" B DG  10 ? ? "C2'" B DG  10 ? ? 1.467 1.516 -0.049 0.008 N 
15 1 "O4'" B DG  10 ? ? "C4'" B DG  10 ? ? 1.380 1.446 -0.066 0.010 N 
16 1 C5    B DG  10 ? ? N7    B DG  10 ? ? 1.428 1.388 0.040  0.006 N 
17 1 N7    B DG  10 ? ? C8    B DG  10 ? ? 1.250 1.305 -0.055 0.006 N 
18 1 N9    B DG  10 ? ? C4    B DG  10 ? ? 1.450 1.375 0.075  0.008 N 
19 1 "O3'" B DG  10 ? ? P     B CBR 11 ? ? 1.478 1.607 -0.129 0.012 Y 
20 1 "O3'" B CBR 11 ? ? P     B DG  12 ? ? 1.690 1.607 0.083  0.012 Y 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "O5'" A DG 2  ? ? P     A DG 2  ? ? OP1   A DG  2  ? ? 99.92  105.70 -5.78 0.90 N 
2  1 C6    A DG 2  ? ? N1    A DG 2  ? ? C2    A DG  2  ? ? 121.01 125.10 -4.09 0.60 N 
3  1 C5    A DG 2  ? ? C6    A DG 2  ? ? N1    A DG  2  ? ? 116.41 111.50 4.91  0.50 N 
4  1 OP1   A DG 4  ? ? P     A DG 4  ? ? OP2   A DG  4  ? ? 130.82 119.60 11.22 1.50 N 
5  1 "O4'" A DG 4  ? ? "C1'" A DG 4  ? ? "C2'" A DG  4  ? ? 109.97 106.80 3.17  0.50 N 
6  1 "O4'" A DG 4  ? ? "C1'" A DG 4  ? ? N9    A DG  4  ? ? 103.34 108.00 -4.66 0.70 N 
7  1 N1    A DG 4  ? ? C2    A DG 4  ? ? N3    A DG  4  ? ? 120.06 123.90 -3.84 0.60 N 
8  1 C5    A DG 4  ? ? C6    A DG 4  ? ? N1    A DG  4  ? ? 115.36 111.50 3.86  0.50 N 
9  1 C8    A DG 4  ? ? N9    A DG 4  ? ? "C1'" A DG  4  ? ? 118.82 127.00 -8.18 1.30 N 
10 1 OP1   A DG 6  ? ? P     A DG 6  ? ? OP2   A DG  6  ? ? 130.88 119.60 11.28 1.50 N 
11 1 "O5'" A DG 6  ? ? P     A DG 6  ? ? OP2   A DG  6  ? ? 99.19  105.70 -6.51 0.90 N 
12 1 C6    A DG 6  ? ? N1    A DG 6  ? ? C2    A DG  6  ? ? 120.48 125.10 -4.62 0.60 N 
13 1 N1    A DG 6  ? ? C2    A DG 6  ? ? N3    A DG  6  ? ? 127.58 123.90 3.68  0.60 N 
14 1 C5    A DG 6  ? ? N7    A DG 6  ? ? C8    A DG  6  ? ? 101.28 104.30 -3.02 0.50 N 
15 1 "O5'" B DG 8  ? ? P     B DG 8  ? ? OP2   B DG  8  ? ? 121.41 110.70 10.71 1.20 N 
16 1 OP1   B DG 10 ? ? P     B DG 10 ? ? OP2   B DG  10 ? ? 131.31 119.60 11.71 1.50 N 
17 1 "O5'" B DG 10 ? ? P     B DG 10 ? ? OP2   B DG  10 ? ? 99.50  105.70 -6.20 0.90 N 
18 1 "O5'" B DG 10 ? ? "C5'" B DG 10 ? ? "C4'" B DG  10 ? ? 104.48 109.40 -4.92 0.80 N 
19 1 N1    B DG 10 ? ? C2    B DG 10 ? ? N3    B DG  10 ? ? 128.09 123.90 4.19  0.60 N 
20 1 C2    B DG 10 ? ? N3    B DG 10 ? ? C4    B DG  10 ? ? 106.33 111.90 -5.57 0.50 N 
21 1 N7    B DG 10 ? ? C8    B DG 10 ? ? N9    B DG  10 ? ? 116.24 113.10 3.14  0.50 N 
22 1 N9    B DG 10 ? ? C4    B DG 10 ? ? C5    B DG  10 ? ? 102.69 105.40 -2.71 0.40 N 
23 1 "C3'" B DG 10 ? ? "O3'" B DG 10 ? ? P     B CBR 11 ? ? 130.15 119.70 10.45 1.20 Y 
24 1 OP1   B DG 12 ? ? P     B DG 12 ? ? OP2   B DG  12 ? ? 130.83 119.60 11.23 1.50 N 
25 1 "O5'" B DG 12 ? ? "C5'" B DG 12 ? ? "C4'" B DG  12 ? ? 100.85 109.40 -8.55 0.80 N 
26 1 N1    B DG 12 ? ? C2    B DG 12 ? ? N2    B DG  12 ? ? 122.32 116.20 6.12  0.90 N 
27 1 N3    B DG 12 ? ? C2    B DG 12 ? ? N2    B DG  12 ? ? 115.62 119.90 -4.28 0.70 N 
# 
loop_
_pdbx_struct_mod_residue.id 
_pdbx_struct_mod_residue.label_asym_id 
_pdbx_struct_mod_residue.label_comp_id 
_pdbx_struct_mod_residue.label_seq_id 
_pdbx_struct_mod_residue.auth_asym_id 
_pdbx_struct_mod_residue.auth_comp_id 
_pdbx_struct_mod_residue.auth_seq_id 
_pdbx_struct_mod_residue.PDB_ins_code 
_pdbx_struct_mod_residue.parent_comp_id 
_pdbx_struct_mod_residue.details 
1 A CBR 1 A CBR 1  ? DC ? 
2 A CBR 3 A CBR 3  ? DC ? 
3 A CBR 5 A CBR 5  ? DC ? 
4 B CBR 1 B CBR 7  ? DC ? 
5 B CBR 3 B CBR 9  ? DC ? 
6 B CBR 5 B CBR 11 ? DC ? 
# 
loop_
_refine_B_iso.class 
_refine_B_iso.details 
_refine_B_iso.treatment 
_refine_B_iso.pdbx_refine_id 
'ALL ATOMS'  TR isotropic 'X-RAY DIFFRACTION' 
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' 
# 
loop_
_refine_occupancy.class 
_refine_occupancy.treatment 
_refine_occupancy.pdbx_refine_id 
'ALL ATOMS'  fix 'X-RAY DIFFRACTION' 
'ALL WATERS' ref 'X-RAY DIFFRACTION' 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
CBR BR     BR N N 1  
CBR P      P  N N 2  
CBR OP1    O  N N 3  
CBR OP2    O  N N 4  
CBR "O5'"  O  N N 5  
CBR N1     N  N N 6  
CBR C6     C  N N 7  
CBR C2     C  N N 8  
CBR O2     O  N N 9  
CBR N3     N  N N 10 
CBR C4     C  N N 11 
CBR N4     N  N N 12 
CBR C5     C  N N 13 
CBR "C2'"  C  N N 14 
CBR "C5'"  C  N N 15 
CBR "C4'"  C  N R 16 
CBR "O4'"  O  N N 17 
CBR "C1'"  C  N R 18 
CBR "C3'"  C  N S 19 
CBR "O3'"  O  N N 20 
CBR OP3    O  N N 21 
CBR HOP2   H  N N 22 
CBR H6     H  N N 23 
CBR H41    H  N N 24 
CBR H42    H  N N 25 
CBR "H2'"  H  N N 26 
CBR "H2''" H  N N 27 
CBR "H5'"  H  N N 28 
CBR "H5''" H  N N 29 
CBR "H4'"  H  N N 30 
CBR "H1'"  H  N N 31 
CBR "H3'"  H  N N 32 
CBR "HO3'" H  N N 33 
CBR HOP3   H  N N 34 
DG  OP3    O  N N 35 
DG  P      P  N N 36 
DG  OP1    O  N N 37 
DG  OP2    O  N N 38 
DG  "O5'"  O  N N 39 
DG  "C5'"  C  N N 40 
DG  "C4'"  C  N R 41 
DG  "O4'"  O  N N 42 
DG  "C3'"  C  N S 43 
DG  "O3'"  O  N N 44 
DG  "C2'"  C  N N 45 
DG  "C1'"  C  N R 46 
DG  N9     N  Y N 47 
DG  C8     C  Y N 48 
DG  N7     N  Y N 49 
DG  C5     C  Y N 50 
DG  C6     C  N N 51 
DG  O6     O  N N 52 
DG  N1     N  N N 53 
DG  C2     C  N N 54 
DG  N2     N  N N 55 
DG  N3     N  N N 56 
DG  C4     C  Y N 57 
DG  HOP3   H  N N 58 
DG  HOP2   H  N N 59 
DG  "H5'"  H  N N 60 
DG  "H5''" H  N N 61 
DG  "H4'"  H  N N 62 
DG  "H3'"  H  N N 63 
DG  "HO3'" H  N N 64 
DG  "H2'"  H  N N 65 
DG  "H2''" H  N N 66 
DG  "H1'"  H  N N 67 
DG  H8     H  N N 68 
DG  H1     H  N N 69 
DG  H21    H  N N 70 
DG  H22    H  N N 71 
HOH O      O  N N 72 
HOH H1     H  N N 73 
HOH H2     H  N N 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
CBR BR    C5     sing N N 1  
CBR P     OP1    doub N N 2  
CBR P     OP2    sing N N 3  
CBR P     "O5'"  sing N N 4  
CBR P     OP3    sing N N 5  
CBR OP2   HOP2   sing N N 6  
CBR "O5'" "C5'"  sing N N 7  
CBR N1    C6     sing N N 8  
CBR N1    C2     sing N N 9  
CBR N1    "C1'"  sing N N 10 
CBR C6    C5     doub N N 11 
CBR C6    H6     sing N N 12 
CBR C2    O2     doub N N 13 
CBR C2    N3     sing N N 14 
CBR N3    C4     doub N N 15 
CBR C4    N4     sing N N 16 
CBR C4    C5     sing N N 17 
CBR N4    H41    sing N N 18 
CBR N4    H42    sing N N 19 
CBR "C2'" "C1'"  sing N N 20 
CBR "C2'" "C3'"  sing N N 21 
CBR "C2'" "H2'"  sing N N 22 
CBR "C2'" "H2''" sing N N 23 
CBR "C5'" "C4'"  sing N N 24 
CBR "C5'" "H5'"  sing N N 25 
CBR "C5'" "H5''" sing N N 26 
CBR "C4'" "O4'"  sing N N 27 
CBR "C4'" "C3'"  sing N N 28 
CBR "C4'" "H4'"  sing N N 29 
CBR "O4'" "C1'"  sing N N 30 
CBR "C1'" "H1'"  sing N N 31 
CBR "C3'" "O3'"  sing N N 32 
CBR "C3'" "H3'"  sing N N 33 
CBR "O3'" "HO3'" sing N N 34 
CBR OP3   HOP3   sing N N 35 
DG  OP3   P      sing N N 36 
DG  OP3   HOP3   sing N N 37 
DG  P     OP1    doub N N 38 
DG  P     OP2    sing N N 39 
DG  P     "O5'"  sing N N 40 
DG  OP2   HOP2   sing N N 41 
DG  "O5'" "C5'"  sing N N 42 
DG  "C5'" "C4'"  sing N N 43 
DG  "C5'" "H5'"  sing N N 44 
DG  "C5'" "H5''" sing N N 45 
DG  "C4'" "O4'"  sing N N 46 
DG  "C4'" "C3'"  sing N N 47 
DG  "C4'" "H4'"  sing N N 48 
DG  "O4'" "C1'"  sing N N 49 
DG  "C3'" "O3'"  sing N N 50 
DG  "C3'" "C2'"  sing N N 51 
DG  "C3'" "H3'"  sing N N 52 
DG  "O3'" "HO3'" sing N N 53 
DG  "C2'" "C1'"  sing N N 54 
DG  "C2'" "H2'"  sing N N 55 
DG  "C2'" "H2''" sing N N 56 
DG  "C1'" N9     sing N N 57 
DG  "C1'" "H1'"  sing N N 58 
DG  N9    C8     sing Y N 59 
DG  N9    C4     sing Y N 60 
DG  C8    N7     doub Y N 61 
DG  C8    H8     sing N N 62 
DG  N7    C5     sing Y N 63 
DG  C5    C6     sing N N 64 
DG  C5    C4     doub Y N 65 
DG  C6    O6     doub N N 66 
DG  C6    N1     sing N N 67 
DG  N1    C2     sing N N 68 
DG  N1    H1     sing N N 69 
DG  C2    N2     sing N N 70 
DG  C2    N3     doub N N 71 
DG  N2    H21    sing N N 72 
DG  N2    H22    sing N N 73 
DG  N3    C4     sing N N 74 
HOH O     H1     sing N N 75 
HOH O     H2     sing N N 76 
# 
_ndb_struct_conf_na.entry_id   1DN5 
_ndb_struct_conf_na.feature    'z-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A CBR 1 1_555 B DG  6 1_555 -0.319 -0.051 -0.027 9.176  -0.754 -1.751 1 A_CBR1:DG12_B A 1 ? B 12 ? 19 1 
1 A DG  2 1_555 B CBR 5 1_555 0.313  -0.233 0.141  -5.689 0.059  4.124  2 A_DG2:CBR11_B A 2 ? B 11 ? 19 1 
1 A CBR 3 1_555 B DG  4 1_555 -0.449 -0.150 -0.136 4.494  -5.463 1.844  3 A_CBR3:DG10_B A 3 ? B 10 ? 19 1 
1 A DG  4 1_555 B CBR 3 1_555 0.306  -0.168 0.045  -5.380 -3.265 -0.286 4 A_DG4:CBR9_B  A 4 ? B 9  ? 19 1 
1 A CBR 5 1_555 B DG  2 1_555 -0.363 -0.138 -0.006 6.967  -1.518 1.357  5 A_CBR5:DG8_B  A 5 ? B 8  ? 19 1 
1 A DG  6 1_555 B CBR 1 1_555 0.211  -0.114 0.060  -3.357 -0.705 1.499  6 A_DG6:CBR7_B  A 6 ? B 7  ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A CBR 1 1_555 B DG  6 1_555 A DG  2 1_555 B CBR 5 1_555 0.207  5.904  3.942 -0.519 1.946  -10.125 -36.353 0.208  2.766 -10.888 
-2.902  -10.323 1 AA_CBR1DG2:CBR11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 
1 A DG  2 1_555 B CBR 5 1_555 A CBR 3 1_555 B DG  4 1_555 -0.061 -0.994 3.320 1.433  -3.853 -49.987 1.452   0.031  3.241 4.551   
1.692   -50.145 2 AA_DG2CBR3:DG10CBR11_BB A 2 ? B 11 ? A 3 ? B 10 ? 
1 A CBR 3 1_555 B DG  4 1_555 A DG  4 1_555 B CBR 3 1_555 -0.165 5.379  3.683 -1.673 -4.605 -7.305  -17.338 -7.520 5.842 31.847  
-11.571 -8.794  3 AA_CBR3DG4:CBR9DG10_BB  A 3 ? B 10 ? A 4 ? B 9  ? 
1 A DG  4 1_555 B CBR 3 1_555 A CBR 5 1_555 B DG  2 1_555 -0.156 -1.265 3.242 0.823  -4.583 -49.181 1.847   -0.128 3.122 5.492   
0.987   -49.387 4 AA_DG4CBR5:DG8CBR9_BB   A 4 ? B 9  ? A 5 ? B 8  ? 
1 A CBR 5 1_555 B DG  2 1_555 A DG  6 1_555 B CBR 1 1_555 0.190  5.644  3.827 0.124  0.098  -12.011 -27.122 1.092  3.779 -0.470  
0.591   -12.012 5 AA_CBR5DG6:CBR7DG8_BB   A 5 ? B 8  ? A 6 ? B 7  ? 
# 
_atom_sites.entry_id                    1DN5 
_atom_sites.fract_transf_matrix[1][1]   0.055772 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.032436 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.022356 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
BR 
C  
N  
O  
P  
# 
loop_