data_1DNE # _entry.id 1DNE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DNE pdb_00001dne 10.2210/pdb1dne/pdb RCSB GDL004 ? ? WWPDB D_1000172857 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1989-01-09 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DNE _pdbx_database_status.recvd_initial_deposition_date 1988-09-14 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Coll, M.' 1 'Aymami, J.' 2 'Van Der Marel, G.A.' 3 'Van Boom, J.H.' 4 'Rich, A.' 5 'Wang, A.H.-J.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Molecular structure of the netropsin-d(CGCGATATCGCG) complex: DNA conformation in an alternating AT segment.' Biochemistry 28 310 320 1989 BICHAW US 0006-2960 0033 ? 2539859 10.1021/bi00427a042 1 ;A Bifurcated Hydrogen-Bonded Conformation in the d(A.T) Base Pairs of the DNA Dodecamer d(CGCAAATTTGCG) and Its Complex with Distamycin ; Proc.Natl.Acad.Sci.USA 84 8385 8389 1987 PNASA6 US 0027-8424 0040 ? ? ? 2 'The Molecular Origin of DNA-Drug Specificity in Netropsin and Distamycin' Proc.Natl.Acad.Sci.USA 82 1376 1380 1985 PNASA6 US 0027-8424 0040 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Coll, M.' 1 ? primary 'Aymami, J.' 2 ? primary 'van der Marel, G.A.' 3 ? primary 'van Boom, J.H.' 4 ? primary 'Rich, A.' 5 ? primary 'Wang, A.H.' 6 ? 1 'Coll, M.' 7 ? 1 'Frederick, C.A.' 8 ? 1 'Wang, A.H.-J.' 9 ? 1 'Rich, A.' 10 ? 2 'Kopka, M.L.' 11 ? 2 'Yoon, C.' 12 ? 2 'Goodsell, D.' 13 ? 2 'Pjura, P.' 14 ? 2 'Dickerson, R.E.' 15 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*TP*AP*TP*CP*GP*CP*G)-3') ; 3663.392 2 ? ? ? ? 2 non-polymer syn NETROPSIN 430.464 1 ? ? ? ? 3 water nat water 18.015 60 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DT)(DA)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGATATCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 NETROPSIN NT 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DT n 1 7 DA n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NT non-polymer . NETROPSIN ? 'C18 H26 N10 O3' 430.464 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DT 6 18 18 DT T B . n B 1 7 DA 7 19 19 DA A B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NT 1 25 25 NT NT A . D 3 HOH 1 29 29 HOH HOH A . D 3 HOH 2 30 30 HOH HOH A . D 3 HOH 3 33 33 HOH HOH A . D 3 HOH 4 36 36 HOH HOH A . D 3 HOH 5 37 37 HOH HOH A . D 3 HOH 6 40 40 HOH HOH A . D 3 HOH 7 42 42 HOH HOH A . D 3 HOH 8 45 45 HOH HOH A . D 3 HOH 9 46 46 HOH HOH A . D 3 HOH 10 47 47 HOH HOH A . D 3 HOH 11 48 48 HOH HOH A . D 3 HOH 12 49 49 HOH HOH A . D 3 HOH 13 50 50 HOH HOH A . D 3 HOH 14 52 52 HOH HOH A . D 3 HOH 15 53 53 HOH HOH A . D 3 HOH 16 57 57 HOH HOH A . D 3 HOH 17 60 60 HOH HOH A . D 3 HOH 18 61 61 HOH HOH A . D 3 HOH 19 62 62 HOH HOH A . D 3 HOH 20 63 63 HOH HOH A . D 3 HOH 21 65 65 HOH HOH A . D 3 HOH 22 66 66 HOH HOH A . D 3 HOH 23 69 69 HOH HOH A . D 3 HOH 24 77 77 HOH HOH A . D 3 HOH 25 82 82 HOH HOH A . D 3 HOH 26 83 83 HOH HOH A . D 3 HOH 27 85 85 HOH HOH A . E 3 HOH 1 26 26 HOH HOH B . E 3 HOH 2 27 27 HOH HOH B . E 3 HOH 3 28 28 HOH HOH B . E 3 HOH 4 31 31 HOH HOH B . E 3 HOH 5 32 32 HOH HOH B . E 3 HOH 6 34 34 HOH HOH B . E 3 HOH 7 35 35 HOH HOH B . E 3 HOH 8 38 38 HOH HOH B . E 3 HOH 9 39 39 HOH HOH B . E 3 HOH 10 41 41 HOH HOH B . E 3 HOH 11 43 43 HOH HOH B . E 3 HOH 12 44 44 HOH HOH B . E 3 HOH 13 51 51 HOH HOH B . E 3 HOH 14 54 54 HOH HOH B . E 3 HOH 15 55 55 HOH HOH B . E 3 HOH 16 56 56 HOH HOH B . E 3 HOH 17 58 58 HOH HOH B . E 3 HOH 18 59 59 HOH HOH B . E 3 HOH 19 64 64 HOH HOH B . E 3 HOH 20 67 67 HOH HOH B . E 3 HOH 21 68 68 HOH HOH B . E 3 HOH 22 70 70 HOH HOH B . E 3 HOH 23 71 71 HOH HOH B . E 3 HOH 24 72 72 HOH HOH B . E 3 HOH 25 73 73 HOH HOH B . E 3 HOH 26 74 74 HOH HOH B . E 3 HOH 27 75 75 HOH HOH B . E 3 HOH 28 76 76 HOH HOH B . E 3 HOH 29 78 78 HOH HOH B . E 3 HOH 30 79 79 HOH HOH B . E 3 HOH 31 80 80 HOH HOH B . E 3 HOH 32 81 81 HOH HOH B . E 3 HOH 33 84 84 HOH HOH B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1DNE _cell.length_a 25.480 _cell.length_b 41.260 _cell.length_c 66.880 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DNE _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1DNE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.40 _exptl_crystal.density_percent_sol 48.73 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 283.00 _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details 'pH 6.50, VAPOR DIFFUSION, temperature 283.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 MGCL2 ? ? ? 1 5 1 SPERMINE ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 283.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'NICOLET P3' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DNE _reflns.observed_criterion_sigma_I 1.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.400 _reflns.number_obs 1848 _reflns.number_all 5696 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1DNE _refine.ls_number_reflns_obs 1848 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.000 _refine.ls_d_res_high 2.400 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2010000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 577 _refine_hist.d_res_high 2.400 _refine_hist.d_res_low 20.000 # _database_PDB_matrix.entry_id 1DNE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1DNE _struct.title 'MOLECULAR STRUCTURE OF THE NETROPSIN-D(CGCGATATCGCG) COMPLEX: DNA CONFORMATION IN AN ALTERNATING AT SEGMENT; CONFORMATION 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DNE _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1DNE _struct_ref.pdbx_db_accession 1DNE _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DNE A 1 ? 12 ? 1DNE 1 ? 12 ? 1 12 2 1 1DNE B 1 ? 12 ? 1DNE 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 6 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 6 B DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 7 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 7 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NT 25 ? 12 'BINDING SITE FOR RESIDUE NT A 25' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 DG A 4 ? DG A 4 . ? 1_555 ? 2 AC1 12 DA A 5 ? DA A 5 . ? 1_555 ? 3 AC1 12 DT A 6 ? DT A 6 . ? 1_555 ? 4 AC1 12 DA A 7 ? DA A 7 . ? 1_555 ? 5 AC1 12 DT A 8 ? DT A 8 . ? 1_555 ? 6 AC1 12 DC A 9 ? DC A 9 . ? 1_555 ? 7 AC1 12 DA B 5 ? DA B 17 . ? 1_555 ? 8 AC1 12 DT B 6 ? DT B 18 . ? 1_555 ? 9 AC1 12 DA B 7 ? DA B 19 . ? 1_555 ? 10 AC1 12 DT B 8 ? DT B 20 . ? 1_555 ? 11 AC1 12 DC B 9 ? DC B 21 . ? 1_555 ? 12 AC1 12 DG B 10 ? DG B 22 . ? 1_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O3'" _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 DG _pdbx_validate_symm_contact.auth_seq_id_1 12 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 N2 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 DG _pdbx_validate_symm_contact.auth_seq_id_2 22 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_664 _pdbx_validate_symm_contact.dist 1.77 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N3 A DC 1 ? ? C4 A DC 1 ? ? 1.398 1.335 0.063 0.007 N 2 1 P A DG 2 ? ? OP2 A DG 2 ? ? 1.595 1.485 0.110 0.017 N 3 1 P A DG 2 ? ? "O5'" A DG 2 ? ? 1.500 1.593 -0.093 0.010 N 4 1 "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 1.591 1.519 0.072 0.010 N 5 1 P A DC 3 ? ? "O5'" A DC 3 ? ? 1.523 1.593 -0.070 0.010 N 6 1 "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.458 1.518 -0.060 0.010 N 7 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.512 1.420 0.092 0.011 N 8 1 P A DG 4 ? ? OP2 A DG 4 ? ? 1.640 1.485 0.155 0.017 N 9 1 P A DG 4 ? ? "O5'" A DG 4 ? ? 1.502 1.593 -0.091 0.010 N 10 1 "O3'" A DA 5 ? ? P A DT 6 ? ? 1.470 1.607 -0.137 0.012 Y 11 1 P A DT 6 ? ? "O5'" A DT 6 ? ? 1.692 1.593 0.099 0.010 N 12 1 P A DT 8 ? ? "O5'" A DT 8 ? ? 1.721 1.593 0.128 0.010 N 13 1 P A DC 9 ? ? OP1 A DC 9 ? ? 1.606 1.485 0.121 0.017 N 14 1 P A DG 10 ? ? OP2 A DG 10 ? ? 1.597 1.485 0.112 0.017 N 15 1 P A DG 10 ? ? "O5'" A DG 10 ? ? 1.699 1.593 0.106 0.010 N 16 1 "O3'" A DC 11 ? ? P A DG 12 ? ? 1.767 1.607 0.160 0.012 Y 17 1 "O3'" B DC 13 ? ? P B DG 14 ? ? 1.699 1.607 0.092 0.012 Y 18 1 P B DG 16 ? ? OP1 B DG 16 ? ? 1.630 1.485 0.145 0.017 N 19 1 P B DG 16 ? ? "O5'" B DG 16 ? ? 1.442 1.593 -0.151 0.010 N 20 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? 1.515 1.420 0.095 0.011 N 21 1 "O3'" B DA 17 ? ? P B DT 18 ? ? 1.700 1.607 0.093 0.012 Y 22 1 "C2'" B DA 19 ? ? "C1'" B DA 19 ? ? 1.429 1.518 -0.089 0.010 N 23 1 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? 1.511 1.420 0.091 0.011 N 24 1 N9 B DA 19 ? ? C4 B DA 19 ? ? 1.326 1.374 -0.048 0.006 N 25 1 P B DC 21 ? ? "O5'" B DC 21 ? ? 1.684 1.593 0.091 0.010 N 26 1 "O5'" B DC 21 ? ? "C5'" B DC 21 ? ? 1.565 1.440 0.125 0.016 N 27 1 P B DG 22 ? ? OP1 B DG 22 ? ? 1.621 1.485 0.136 0.017 N 28 1 P B DG 22 ? ? OP2 B DG 22 ? ? 1.376 1.485 -0.109 0.017 N 29 1 P B DG 22 ? ? "O5'" B DG 22 ? ? 1.677 1.593 0.084 0.010 N 30 1 P B DG 24 ? ? OP1 B DG 24 ? ? 1.593 1.485 0.108 0.017 N 31 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? 1.510 1.420 0.090 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 129.63 119.70 9.93 1.20 Y 2 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 104.90 119.60 -14.70 1.50 N 3 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 120.55 108.30 12.25 0.30 N 4 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N3 A DG 2 ? ? 127.77 123.90 3.87 0.60 N 5 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 128.07 119.90 8.17 0.60 N 6 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 118.82 128.60 -9.78 0.60 N 7 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DC 3 ? ? 127.83 119.70 8.13 1.20 Y 8 1 "O3'" A DG 2 ? ? P A DC 3 ? ? "O5'" A DC 3 ? ? 116.14 104.00 12.14 1.90 Y 9 1 OP1 A DC 3 ? ? P A DC 3 ? ? OP2 A DC 3 ? ? 104.40 119.60 -15.20 1.50 N 10 1 P A DC 3 ? ? "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? 109.06 120.90 -11.84 1.60 N 11 1 "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? 101.04 104.50 -3.46 0.40 N 12 1 "C1'" A DC 3 ? ? "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? 102.05 110.10 -8.05 1.00 N 13 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 100.17 108.00 -7.83 0.70 N 14 1 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 126.30 121.90 4.40 0.70 N 15 1 "C3'" A DC 3 ? ? "O3'" A DC 3 ? ? P A DG 4 ? ? 110.79 119.70 -8.91 1.20 Y 16 1 OP1 A DG 4 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 103.54 119.60 -16.06 1.50 N 17 1 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 134.33 120.90 13.43 1.60 N 18 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 97.73 104.50 -6.77 0.40 N 19 1 "C1'" A DG 4 ? ? "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? 102.81 110.10 -7.29 1.00 N 20 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 115.42 108.30 7.12 0.30 N 21 1 C5 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 124.61 128.60 -3.99 0.60 N 22 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 116.35 108.30 8.05 0.30 N 23 1 "C3'" A DA 5 ? ? "O3'" A DA 5 ? ? P A DT 6 ? ? 138.50 119.70 18.80 1.20 Y 24 1 "O3'" A DA 5 ? ? P A DT 6 ? ? OP1 A DT 6 ? ? 123.27 110.50 12.77 1.10 Y 25 1 OP1 A DT 6 ? ? P A DT 6 ? ? OP2 A DT 6 ? ? 105.68 119.60 -13.92 1.50 N 26 1 "O5'" A DT 6 ? ? P A DT 6 ? ? OP1 A DT 6 ? ? 99.61 105.70 -6.09 0.90 N 27 1 P A DT 6 ? ? "O5'" A DT 6 ? ? "C5'" A DT 6 ? ? 109.85 120.90 -11.05 1.60 N 28 1 "O4'" A DT 6 ? ? "C4'" A DT 6 ? ? "C3'" A DT 6 ? ? 100.19 104.50 -4.31 0.40 N 29 1 "C4'" A DT 6 ? ? "C3'" A DT 6 ? ? "C2'" A DT 6 ? ? 96.35 102.20 -5.85 0.70 N 30 1 N1 A DT 6 ? ? C2 A DT 6 ? ? O2 A DT 6 ? ? 117.43 123.10 -5.67 0.80 N 31 1 "C3'" A DT 6 ? ? "O3'" A DT 6 ? ? P A DA 7 ? ? 130.78 119.70 11.08 1.20 Y 32 1 OP1 A DA 7 ? ? P A DA 7 ? ? OP2 A DA 7 ? ? 106.57 119.60 -13.03 1.50 N 33 1 "O5'" A DA 7 ? ? P A DA 7 ? ? OP2 A DA 7 ? ? 123.43 110.70 12.73 1.20 N 34 1 "O5'" A DA 7 ? ? "C5'" A DA 7 ? ? "C4'" A DA 7 ? ? 101.78 109.40 -7.62 0.80 N 35 1 "C4'" A DA 7 ? ? "C3'" A DA 7 ? ? "C2'" A DA 7 ? ? 97.75 102.20 -4.45 0.70 N 36 1 "C3'" A DA 7 ? ? "C2'" A DA 7 ? ? "C1'" A DA 7 ? ? 92.93 102.40 -9.47 0.80 N 37 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? "C2'" A DA 7 ? ? 99.09 105.90 -6.81 0.80 N 38 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 117.31 108.30 9.01 0.30 N 39 1 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 122.88 118.60 4.28 0.60 N 40 1 "O3'" A DA 7 ? ? P A DT 8 ? ? "O5'" A DT 8 ? ? 90.88 104.00 -13.12 1.90 Y 41 1 "O5'" A DT 8 ? ? "C5'" A DT 8 ? ? "C4'" A DT 8 ? ? 104.30 109.40 -5.10 0.80 N 42 1 P A DT 8 ? ? "O5'" A DT 8 ? ? "C5'" A DT 8 ? ? 106.03 120.90 -14.87 1.60 N 43 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 113.06 108.30 4.76 0.30 N 44 1 N1 A DT 8 ? ? C2 A DT 8 ? ? N3 A DT 8 ? ? 119.08 114.60 4.48 0.60 N 45 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 121.33 127.20 -5.87 0.60 N 46 1 N3 A DT 8 ? ? C4 A DT 8 ? ? C5 A DT 8 ? ? 119.04 115.20 3.84 0.60 N 47 1 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DC 9 ? ? 134.02 119.70 14.32 1.20 Y 48 1 "O5'" A DC 9 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 119.17 110.70 8.47 1.20 N 49 1 P A DC 9 ? ? "O5'" A DC 9 ? ? "C5'" A DC 9 ? ? 107.09 120.90 -13.81 1.60 N 50 1 "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? 100.83 104.50 -3.67 0.40 N 51 1 "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? "C2'" A DC 9 ? ? 96.97 102.20 -5.23 0.70 N 52 1 "C3'" A DC 9 ? ? "C2'" A DC 9 ? ? "C1'" A DC 9 ? ? 92.68 102.40 -9.72 0.80 N 53 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 112.77 108.30 4.47 0.30 N 54 1 N3 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 126.74 121.90 4.84 0.70 N 55 1 C2 A DC 9 ? ? N1 A DC 9 ? ? "C1'" A DC 9 ? ? 112.11 118.80 -6.69 1.10 N 56 1 "O3'" A DC 9 ? ? P A DG 10 ? ? OP1 A DG 10 ? ? 124.06 110.50 13.56 1.10 Y 57 1 "O5'" A DG 10 ? ? "C5'" A DG 10 ? ? "C4'" A DG 10 ? ? 102.26 109.40 -7.14 0.80 N 58 1 P A DG 10 ? ? "O5'" A DG 10 ? ? "C5'" A DG 10 ? ? 104.64 120.90 -16.26 1.60 N 59 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 122.59 108.30 14.29 0.30 N 60 1 C6 A DG 10 ? ? N1 A DG 10 ? ? C2 A DG 10 ? ? 121.44 125.10 -3.66 0.60 N 61 1 C5 A DG 10 ? ? C6 A DG 10 ? ? N1 A DG 10 ? ? 116.57 111.50 5.07 0.50 N 62 1 "O5'" A DC 11 ? ? "C5'" A DC 11 ? ? "C4'" A DC 11 ? ? 103.86 109.40 -5.54 0.80 N 63 1 P A DC 11 ? ? "O5'" A DC 11 ? ? "C5'" A DC 11 ? ? 107.47 120.90 -13.43 1.60 N 64 1 "O4'" A DC 11 ? ? "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? 101.71 104.50 -2.79 0.40 N 65 1 "C1'" A DC 11 ? ? "O4'" A DC 11 ? ? "C4'" A DC 11 ? ? 99.89 110.10 -10.21 1.00 N 66 1 C6 A DC 11 ? ? N1 A DC 11 ? ? C2 A DC 11 ? ? 124.11 120.30 3.81 0.40 N 67 1 N1 A DC 11 ? ? C2 A DC 11 ? ? N3 A DC 11 ? ? 114.42 119.20 -4.78 0.70 N 68 1 C2 A DC 11 ? ? N3 A DC 11 ? ? C4 A DC 11 ? ? 124.22 119.90 4.32 0.50 N 69 1 N1 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 114.77 118.90 -4.13 0.60 N 70 1 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 130.70 121.90 8.80 0.70 N 71 1 N3 A DC 11 ? ? C4 A DC 11 ? ? N4 A DC 11 ? ? 122.31 118.00 4.31 0.70 N 72 1 "C3'" A DC 11 ? ? "O3'" A DC 11 ? ? P A DG 12 ? ? 102.39 119.70 -17.31 1.20 Y 73 1 "O5'" A DG 12 ? ? P A DG 12 ? ? OP2 A DG 12 ? ? 126.40 110.70 15.70 1.20 N 74 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.65 108.30 2.35 0.30 N 75 1 C6 A DG 12 ? ? N1 A DG 12 ? ? C2 A DG 12 ? ? 120.28 125.10 -4.82 0.60 N 76 1 N1 A DG 12 ? ? C2 A DG 12 ? ? N3 A DG 12 ? ? 127.56 123.90 3.66 0.60 N 77 1 C5 A DG 12 ? ? C6 A DG 12 ? ? N1 A DG 12 ? ? 115.10 111.50 3.60 0.50 N 78 1 N3 A DG 12 ? ? C2 A DG 12 ? ? N2 A DG 12 ? ? 115.00 119.90 -4.90 0.70 N 79 1 "O5'" B DC 13 ? ? "C5'" B DC 13 ? ? "C4'" B DC 13 ? ? 101.22 109.40 -8.18 0.80 N 80 1 N1 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 122.70 118.90 3.80 0.60 N 81 1 "C3'" B DC 13 ? ? "O3'" B DC 13 ? ? P B DG 14 ? ? 108.82 119.70 -10.88 1.20 Y 82 1 C6 B DG 14 ? ? N1 B DG 14 ? ? C2 B DG 14 ? ? 120.78 125.10 -4.32 0.60 N 83 1 N1 B DG 14 ? ? C6 B DG 14 ? ? O6 B DG 14 ? ? 124.39 119.90 4.49 0.60 N 84 1 C5 B DG 14 ? ? C6 B DG 14 ? ? O6 B DG 14 ? ? 121.36 128.60 -7.24 0.60 N 85 1 "C3'" B DG 14 ? ? "O3'" B DG 14 ? ? P B DC 15 ? ? 109.09 119.70 -10.61 1.20 Y 86 1 OP1 B DC 15 ? ? P B DC 15 ? ? OP2 B DC 15 ? ? 109.53 119.60 -10.07 1.50 N 87 1 "O5'" B DC 15 ? ? P B DC 15 ? ? OP2 B DC 15 ? ? 120.08 110.70 9.38 1.20 N 88 1 "C1'" B DC 15 ? ? "O4'" B DC 15 ? ? "C4'" B DC 15 ? ? 102.99 110.10 -7.11 1.00 N 89 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? "C2'" B DC 15 ? ? 98.61 105.90 -7.29 0.80 N 90 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 120.20 108.30 11.90 0.30 N 91 1 OP1 B DG 16 ? ? P B DG 16 ? ? OP2 B DG 16 ? ? 100.49 119.60 -19.11 1.50 N 92 1 "O5'" B DG 16 ? ? P B DG 16 ? ? OP2 B DG 16 ? ? 131.28 110.70 20.58 1.20 N 93 1 "O5'" B DG 16 ? ? "C5'" B DG 16 ? ? "C4'" B DG 16 ? ? 102.98 109.40 -6.42 0.80 N 94 1 N1 B DG 16 ? ? C6 B DG 16 ? ? O6 B DG 16 ? ? 124.49 119.90 4.59 0.60 N 95 1 C5 B DG 16 ? ? C6 B DG 16 ? ? O6 B DG 16 ? ? 121.83 128.60 -6.77 0.60 N 96 1 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P B DA 17 ? ? 112.10 119.70 -7.60 1.20 Y 97 1 "O3'" B DG 16 ? ? P B DA 17 ? ? OP1 B DA 17 ? ? 117.51 110.50 7.01 1.10 Y 98 1 P B DA 17 ? ? "O5'" B DA 17 ? ? "C5'" B DA 17 ? ? 103.41 120.90 -17.49 1.60 N 99 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 112.14 108.30 3.84 0.30 N 100 1 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 122.34 118.60 3.74 0.60 N 101 1 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DT 18 ? ? 107.54 119.70 -12.16 1.20 Y 102 1 "O3'" B DA 17 ? ? P B DT 18 ? ? "O5'" B DT 18 ? ? 92.39 104.00 -11.61 1.90 Y 103 1 "O5'" B DT 18 ? ? P B DT 18 ? ? OP2 B DT 18 ? ? 121.86 110.70 11.16 1.20 N 104 1 "O4'" B DT 18 ? ? "C4'" B DT 18 ? ? "C3'" B DT 18 ? ? 97.90 104.50 -6.60 0.40 N 105 1 "C4'" B DT 18 ? ? "C3'" B DT 18 ? ? "C2'" B DT 18 ? ? 97.53 102.20 -4.67 0.70 N 106 1 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 110.36 108.30 2.06 0.30 N 107 1 C6 B DT 18 ? ? N1 B DT 18 ? ? C2 B DT 18 ? ? 118.28 121.30 -3.02 0.50 N 108 1 N1 B DT 18 ? ? C2 B DT 18 ? ? N3 B DT 18 ? ? 120.03 114.60 5.43 0.60 N 109 1 C2 B DT 18 ? ? N3 B DT 18 ? ? C4 B DT 18 ? ? 121.68 127.20 -5.52 0.60 N 110 1 C4 B DT 18 ? ? C5 B DT 18 ? ? C7 B DT 18 ? ? 114.67 119.00 -4.33 0.60 N 111 1 "O3'" B DT 18 ? ? P B DA 19 ? ? OP1 B DA 19 ? ? 119.55 110.50 9.05 1.10 Y 112 1 OP1 B DA 19 ? ? P B DA 19 ? ? OP2 B DA 19 ? ? 106.29 119.60 -13.31 1.50 N 113 1 "O5'" B DA 19 ? ? P B DA 19 ? ? OP2 B DA 19 ? ? 122.92 110.70 12.22 1.20 N 114 1 N9 B DA 19 ? ? "C1'" B DA 19 ? ? "C2'" B DA 19 ? ? 128.59 114.30 14.29 1.40 N 115 1 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 95.48 108.00 -12.52 0.70 N 116 1 N1 B DA 19 ? ? C6 B DA 19 ? ? N6 B DA 19 ? ? 122.41 118.60 3.81 0.60 N 117 1 "O5'" B DT 20 ? ? P B DT 20 ? ? OP1 B DT 20 ? ? 119.85 110.70 9.15 1.20 N 118 1 "O4'" B DT 20 ? ? "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? 98.62 104.50 -5.88 0.40 N 119 1 "C3'" B DT 20 ? ? "C2'" B DT 20 ? ? "C1'" B DT 20 ? ? 96.49 102.40 -5.91 0.80 N 120 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 113.72 108.30 5.42 0.30 N 121 1 C2 B DT 20 ? ? N3 B DT 20 ? ? C4 B DT 20 ? ? 123.50 127.20 -3.70 0.60 N 122 1 "O3'" B DT 20 ? ? P B DC 21 ? ? "O5'" B DC 21 ? ? 91.49 104.00 -12.51 1.90 Y 123 1 "O5'" B DC 21 ? ? P B DC 21 ? ? OP2 B DC 21 ? ? 120.63 110.70 9.93 1.20 N 124 1 "O5'" B DC 21 ? ? "C5'" B DC 21 ? ? "C4'" B DC 21 ? ? 99.32 109.40 -10.08 0.80 N 125 1 P B DC 21 ? ? "O5'" B DC 21 ? ? "C5'" B DC 21 ? ? 98.57 120.90 -22.33 1.60 N 126 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 115.96 108.30 7.66 0.30 N 127 1 N3 B DC 21 ? ? C4 B DC 21 ? ? N4 B DC 21 ? ? 122.55 118.00 4.55 0.70 N 128 1 "O3'" B DC 21 ? ? P B DG 22 ? ? OP2 B DG 22 ? ? 117.17 110.50 6.67 1.10 Y 129 1 P B DG 22 ? ? "O5'" B DG 22 ? ? "C5'" B DG 22 ? ? 106.82 120.90 -14.08 1.60 N 130 1 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 93.61 102.40 -8.79 0.80 N 131 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 114.28 108.30 5.98 0.30 N 132 1 "C3'" B DG 22 ? ? "O3'" B DG 22 ? ? P B DC 23 ? ? 110.99 119.70 -8.71 1.20 Y 133 1 "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? "C3'" B DC 23 ? ? 96.82 104.50 -7.68 0.40 N 134 1 "C1'" B DC 23 ? ? "O4'" B DC 23 ? ? "C4'" B DC 23 ? ? 98.12 110.10 -11.98 1.00 N 135 1 N3 B DC 23 ? ? C4 B DC 23 ? ? N4 B DC 23 ? ? 122.61 118.00 4.61 0.70 N 136 1 OP1 B DG 24 ? ? P B DG 24 ? ? OP2 B DG 24 ? ? 109.96 119.60 -9.64 1.50 N 137 1 "O4'" B DG 24 ? ? "C4'" B DG 24 ? ? "C3'" B DG 24 ? ? 102.09 104.50 -2.41 0.40 N 138 1 "C1'" B DG 24 ? ? "O4'" B DG 24 ? ? "C4'" B DG 24 ? ? 100.38 110.10 -9.72 1.00 N 139 1 C5 B DG 24 ? ? C6 B DG 24 ? ? O6 B DG 24 ? ? 124.56 128.60 -4.04 0.60 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 2 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.050 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 "O3'" _pdbx_validate_polymer_linkage.auth_asym_id_1 A _pdbx_validate_polymer_linkage.auth_comp_id_1 DC _pdbx_validate_polymer_linkage.auth_seq_id_1 11 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 P _pdbx_validate_polymer_linkage.auth_asym_id_2 A _pdbx_validate_polymer_linkage.auth_comp_id_2 DG _pdbx_validate_polymer_linkage.auth_seq_id_2 12 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 1.77 # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MINOR GROOVE BINDER' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 NT C1 C N N 147 NT N1 N N N 148 NT N2 N N N 149 NT N3 N N N 150 NT C2 C N N 151 NT C3 C N N 152 NT O1 O N N 153 NT N4 N N N 154 NT C4 C Y N 155 NT C5 C Y N 156 NT C6 C Y N 157 NT N5 N Y N 158 NT C8 C N N 159 NT C7 C Y N 160 NT C9 C N N 161 NT O2 O N N 162 NT N6 N N N 163 NT C10 C Y N 164 NT C11 C Y N 165 NT C12 C Y N 166 NT N7 N Y N 167 NT C14 C N N 168 NT C13 C Y N 169 NT C15 C N N 170 NT O3 O N N 171 NT N8 N N N 172 NT C16 C N N 173 NT C17 C N N 174 NT C18 C N N 175 NT N9 N N N 176 NT N10 N N N 177 NT HN1 H N N 178 NT HN21 H N N 179 NT HN22 H N N 180 NT HN3 H N N 181 NT H21 H N N 182 NT H22 H N N 183 NT HN4 H N N 184 NT H5 H N N 185 NT H81 H N N 186 NT H82 H N N 187 NT H83 H N N 188 NT H7 H N N 189 NT HN6 H N N 190 NT H11 H N N 191 NT H141 H N N 192 NT H142 H N N 193 NT H143 H N N 194 NT H13 H N N 195 NT HN8 H N N 196 NT H161 H N N 197 NT H162 H N N 198 NT H171 H N N 199 NT H172 H N N 200 NT HN9 H N N 201 NT HN01 H N N 202 NT HN02 H N N 203 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 NT C1 N1 doub N N 152 NT C1 N2 sing N N 153 NT C1 N3 sing N N 154 NT N1 HN1 sing N N 155 NT N2 HN21 sing N N 156 NT N2 HN22 sing N N 157 NT N3 C2 sing N N 158 NT N3 HN3 sing N N 159 NT C2 C3 sing N N 160 NT C2 H21 sing N N 161 NT C2 H22 sing N N 162 NT C3 O1 doub N N 163 NT C3 N4 sing N N 164 NT N4 C4 sing N N 165 NT N4 HN4 sing N N 166 NT C4 C5 sing Y N 167 NT C4 C7 doub Y N 168 NT C5 C6 doub Y N 169 NT C5 H5 sing N N 170 NT C6 N5 sing Y N 171 NT C6 C9 sing N N 172 NT N5 C8 sing N N 173 NT N5 C7 sing Y N 174 NT C8 H81 sing N N 175 NT C8 H82 sing N N 176 NT C8 H83 sing N N 177 NT C7 H7 sing N N 178 NT C9 O2 doub N N 179 NT C9 N6 sing N N 180 NT N6 C10 sing N N 181 NT N6 HN6 sing N N 182 NT C10 C11 sing Y N 183 NT C10 C13 doub Y N 184 NT C11 C12 doub Y N 185 NT C11 H11 sing N N 186 NT C12 N7 sing Y N 187 NT C12 C15 sing N N 188 NT N7 C14 sing N N 189 NT N7 C13 sing Y N 190 NT C14 H141 sing N N 191 NT C14 H142 sing N N 192 NT C14 H143 sing N N 193 NT C13 H13 sing N N 194 NT C15 O3 doub N N 195 NT C15 N8 sing N N 196 NT N8 C16 sing N N 197 NT N8 HN8 sing N N 198 NT C16 C17 sing N N 199 NT C16 H161 sing N N 200 NT C16 H162 sing N N 201 NT C17 C18 sing N N 202 NT C17 H171 sing N N 203 NT C17 H172 sing N N 204 NT C18 N9 doub N N 205 NT C18 N10 sing N N 206 NT N9 HN9 sing N N 207 NT N10 HN01 sing N N 208 NT N10 HN02 sing N N 209 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1DNE 'double helix' 1DNE 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.102 -0.122 0.197 5.314 -5.149 -3.558 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.122 -0.471 -0.044 1.377 -14.686 -6.101 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 -0.273 -0.245 0.706 -11.269 -6.554 -2.685 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 0.506 -0.409 0.177 13.600 -9.302 -2.103 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.055 -0.055 -0.125 1.227 -1.432 2.705 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DT 6 1_555 B DA 7 1_555 -0.383 -0.353 -0.327 10.130 -11.874 -0.786 6 A_DT6:DA19_B A 6 ? B 19 ? 20 1 1 A DA 7 1_555 B DT 6 1_555 0.245 -0.278 -0.139 -4.723 -17.006 -2.367 7 A_DA7:DT18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 0.024 -0.163 0.245 2.647 -6.747 -5.199 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.312 -0.350 0.421 -8.861 -11.658 -3.823 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 0.537 -0.172 0.268 7.974 -11.125 -3.660 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.439 -0.607 1.135 -11.679 -15.428 -6.025 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 0.363 -0.122 0.176 -5.120 -1.501 3.086 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -1.220 0.881 3.468 0.277 13.099 40.538 -0.249 1.713 3.566 18.335 -0.388 42.518 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.169 -1.025 3.777 -8.768 -8.226 29.915 -0.099 -2.171 3.728 -15.187 16.188 32.189 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.827 0.709 2.878 4.206 6.158 36.350 0.385 1.799 2.847 9.745 -6.656 37.082 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 0.677 -0.657 3.729 -0.794 1.832 32.348 -1.541 -1.372 3.670 3.285 1.423 32.408 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DT 6 1_555 B DA 7 1_555 -0.450 0.491 3.056 1.027 -1.698 30.509 1.244 1.042 3.009 -3.222 -1.949 30.572 5 AA_DA5DT6:DA19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DT 6 1_555 B DA 7 1_555 A DA 7 1_555 B DT 6 1_555 0.311 -0.081 3.600 2.674 -2.284 45.668 0.115 -0.143 3.611 -2.937 -3.439 45.796 6 AA_DT6DA7:DT18DA19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DA 7 1_555 B DT 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.276 -0.720 3.180 -3.325 5.831 25.409 -3.082 -0.247 2.955 12.971 7.397 26.267 7 AA_DA7DT8:DA17DT18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 0.022 -0.059 3.566 0.296 -3.601 42.908 0.308 0.001 3.560 -4.913 -0.404 43.053 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.247 1.059 3.086 1.272 1.206 38.827 1.452 -0.224 3.123 1.813 -1.913 38.865 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.988 -0.056 3.965 -8.399 -8.667 28.366 2.032 -0.208 3.941 -16.760 16.241 30.778 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 0.425 0.789 3.267 4.045 -2.000 47.572 1.133 -0.203 3.257 -2.472 -5.001 47.773 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 1DNE _atom_sites.fract_transf_matrix[1][1] 0.039246 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024237 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014952 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_