data_1DNH # _entry.id 1DNH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DNH pdb_00001dnh 10.2210/pdb1dnh/pdb RCSB GDL002 ? ? WWPDB D_1000172859 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1989-01-09 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-08-24 5 'Structure model' 1 4 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DNH _pdbx_database_status.recvd_initial_deposition_date 1988-02-16 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Teng, M.-K.' 1 'Usman, N.' 2 'Frederick, C.A.' 3 'Wang, A.H.-J.' 4 # _citation.id primary _citation.title 'The molecular structure of the complex of Hoechst 33258 and the DNA dodecamer d(CGCGAATTCGCG).' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 16 _citation.page_first 2671 _citation.page_last 2690 _citation.year 1988 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 2452403 _citation.pdbx_database_id_DOI 10.1093/nar/16.6.2671 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Teng, M.K.' 1 ? primary 'Usman, N.' 2 ? primary 'Frederick, C.A.' 3 ? primary 'Wang, A.H.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') ; 3663.392 2 ? ? ? ? 2 non-polymer syn "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" 424.498 1 ? ? ? ? 3 water nat water 18.015 126 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" HT 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 HT non-polymer . "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" 'HOECHST 33258' 'C25 H24 N6 O' 424.498 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DG 12 12 12 DG DG A . n B 1 1 DC 1 13 13 DC DC B . n B 1 2 DG 2 14 14 DG DG B . n B 1 3 DC 3 15 15 DC DC B . n B 1 4 DG 4 16 16 DG DG B . n B 1 5 DA 5 17 17 DA DA B . n B 1 6 DA 6 18 18 DA DA B . n B 1 7 DT 7 19 19 DT DT B . n B 1 8 DT 8 20 20 DT DT B . n B 1 9 DC 9 21 21 DC DC B . n B 1 10 DG 10 22 22 DG DG B . n B 1 11 DC 11 23 23 DC DC B . n B 1 12 DG 12 24 24 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HT 1 25 25 HT HT B . D 3 HOH 1 26 26 HOH HOH A . D 3 HOH 2 29 29 HOH HOH A . D 3 HOH 3 31 31 HOH HOH A . D 3 HOH 4 32 32 HOH HOH A . D 3 HOH 5 36 36 HOH HOH A . D 3 HOH 6 37 37 HOH HOH A . D 3 HOH 7 39 39 HOH HOH A . D 3 HOH 8 40 40 HOH HOH A . D 3 HOH 9 41 41 HOH HOH A . D 3 HOH 10 43 43 HOH HOH A . D 3 HOH 11 45 45 HOH HOH A . D 3 HOH 12 47 47 HOH HOH A . D 3 HOH 13 49 49 HOH HOH A . D 3 HOH 14 50 50 HOH HOH A . D 3 HOH 15 51 51 HOH HOH A . D 3 HOH 16 54 54 HOH HOH A . D 3 HOH 17 56 56 HOH HOH A . D 3 HOH 18 58 58 HOH HOH A . D 3 HOH 19 61 61 HOH HOH A . D 3 HOH 20 65 65 HOH HOH A . D 3 HOH 21 67 67 HOH HOH A . D 3 HOH 22 68 68 HOH HOH A . D 3 HOH 23 72 72 HOH HOH A . D 3 HOH 24 76 76 HOH HOH A . D 3 HOH 25 77 77 HOH HOH A . D 3 HOH 26 80 80 HOH HOH A . D 3 HOH 27 81 81 HOH HOH A . D 3 HOH 28 83 83 HOH HOH A . D 3 HOH 29 84 84 HOH HOH A . D 3 HOH 30 85 85 HOH HOH A . D 3 HOH 31 89 89 HOH HOH A . D 3 HOH 32 90 90 HOH HOH A . D 3 HOH 33 91 91 HOH HOH A . D 3 HOH 34 93 93 HOH HOH A . D 3 HOH 35 94 94 HOH HOH A . D 3 HOH 36 100 100 HOH HOH A . D 3 HOH 37 106 106 HOH HOH A . D 3 HOH 38 111 111 HOH HOH A . D 3 HOH 39 115 115 HOH HOH A . D 3 HOH 40 116 116 HOH HOH A . D 3 HOH 41 119 119 HOH HOH A . D 3 HOH 42 120 120 HOH HOH A . D 3 HOH 43 122 122 HOH HOH A . D 3 HOH 44 123 123 HOH HOH A . D 3 HOH 45 126 126 HOH HOH A . D 3 HOH 46 127 127 HOH HOH A . D 3 HOH 47 128 128 HOH HOH A . D 3 HOH 48 132 132 HOH HOH A . D 3 HOH 49 133 133 HOH HOH A . D 3 HOH 50 134 134 HOH HOH A . D 3 HOH 51 136 136 HOH HOH A . D 3 HOH 52 139 139 HOH HOH A . D 3 HOH 53 140 140 HOH HOH A . D 3 HOH 54 142 142 HOH HOH A . D 3 HOH 55 143 143 HOH HOH A . D 3 HOH 56 144 144 HOH HOH A . D 3 HOH 57 147 147 HOH HOH A . D 3 HOH 58 148 148 HOH HOH A . D 3 HOH 59 150 150 HOH HOH A . D 3 HOH 60 151 151 HOH HOH A . E 3 HOH 1 27 27 HOH HOH B . E 3 HOH 2 28 28 HOH HOH B . E 3 HOH 3 30 30 HOH HOH B . E 3 HOH 4 33 33 HOH HOH B . E 3 HOH 5 34 34 HOH HOH B . E 3 HOH 6 35 35 HOH HOH B . E 3 HOH 7 38 38 HOH HOH B . E 3 HOH 8 42 42 HOH HOH B . E 3 HOH 9 44 44 HOH HOH B . E 3 HOH 10 46 46 HOH HOH B . E 3 HOH 11 48 48 HOH HOH B . E 3 HOH 12 52 52 HOH HOH B . E 3 HOH 13 53 53 HOH HOH B . E 3 HOH 14 55 55 HOH HOH B . E 3 HOH 15 57 57 HOH HOH B . E 3 HOH 16 59 59 HOH HOH B . E 3 HOH 17 60 60 HOH HOH B . E 3 HOH 18 62 62 HOH HOH B . E 3 HOH 19 63 63 HOH HOH B . E 3 HOH 20 64 64 HOH HOH B . E 3 HOH 21 66 66 HOH HOH B . E 3 HOH 22 69 69 HOH HOH B . E 3 HOH 23 70 70 HOH HOH B . E 3 HOH 24 71 71 HOH HOH B . E 3 HOH 25 73 73 HOH HOH B . E 3 HOH 26 74 74 HOH HOH B . E 3 HOH 27 75 75 HOH HOH B . E 3 HOH 28 78 78 HOH HOH B . E 3 HOH 29 79 79 HOH HOH B . E 3 HOH 30 82 82 HOH HOH B . E 3 HOH 31 86 86 HOH HOH B . E 3 HOH 32 87 87 HOH HOH B . E 3 HOH 33 88 88 HOH HOH B . E 3 HOH 34 92 92 HOH HOH B . E 3 HOH 35 95 95 HOH HOH B . E 3 HOH 36 96 96 HOH HOH B . E 3 HOH 37 97 97 HOH HOH B . E 3 HOH 38 98 98 HOH HOH B . E 3 HOH 39 99 99 HOH HOH B . E 3 HOH 40 101 101 HOH HOH B . E 3 HOH 41 102 102 HOH HOH B . E 3 HOH 42 103 103 HOH HOH B . E 3 HOH 43 104 104 HOH HOH B . E 3 HOH 44 105 105 HOH HOH B . E 3 HOH 45 107 107 HOH HOH B . E 3 HOH 46 108 108 HOH HOH B . E 3 HOH 47 109 109 HOH HOH B . E 3 HOH 48 110 110 HOH HOH B . E 3 HOH 49 112 112 HOH HOH B . E 3 HOH 50 113 113 HOH HOH B . E 3 HOH 51 114 114 HOH HOH B . E 3 HOH 52 117 117 HOH HOH B . E 3 HOH 53 118 118 HOH HOH B . E 3 HOH 54 121 121 HOH HOH B . E 3 HOH 55 124 124 HOH HOH B . E 3 HOH 56 125 125 HOH HOH B . E 3 HOH 57 129 129 HOH HOH B . E 3 HOH 58 130 130 HOH HOH B . E 3 HOH 59 131 131 HOH HOH B . E 3 HOH 60 135 135 HOH HOH B . E 3 HOH 61 137 137 HOH HOH B . E 3 HOH 62 138 138 HOH HOH B . E 3 HOH 63 141 141 HOH HOH B . E 3 HOH 64 145 145 HOH HOH B . E 3 HOH 65 146 146 HOH HOH B . E 3 HOH 66 149 149 HOH HOH B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1DNH _cell.length_a 25.230 _cell.length_b 40.580 _cell.length_c 66.080 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1DNH _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1DNH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.72 _exptl_crystal.density_Matthews 2.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 SPERMINE ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 288.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'NICOLET P3' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DNH _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.250 _reflns.number_obs 3634 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.entry_id 1DNH _refine.ls_number_reflns_obs 2000 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.000 _refine.ls_d_res_high 2.250 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1570000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 126 _refine_hist.number_atoms_total 644 _refine_hist.d_res_high 2.250 _refine_hist.d_res_low 20.000 # _database_PDB_matrix.entry_id 1DNH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1DNH _struct.title 'THE MOLECULAR STRUCTURE OF THE COMPLEX OF HOECHST 33258 AND THE DNA DODECAMER D(CGCGAATTCGCG)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DNH _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1DNH _struct_ref.pdbx_db_accession 1DNH _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DNH A 1 ? 12 ? 1DNH 1 ? 12 ? 1 12 2 1 1DNH B 1 ? 12 ? 1DNH 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B HT 25 ? 12 'BINDING SITE FOR RESIDUE HT B 25' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 DA A 5 ? DA A 5 . ? 1_555 ? 2 AC1 12 DA A 6 ? DA A 6 . ? 1_555 ? 3 AC1 12 DT A 7 ? DT A 7 . ? 1_555 ? 4 AC1 12 DT A 8 ? DT A 8 . ? 1_555 ? 5 AC1 12 DC A 9 ? DC A 9 . ? 1_555 ? 6 AC1 12 DA B 5 ? DA B 17 . ? 1_555 ? 7 AC1 12 DA B 6 ? DA B 18 . ? 1_555 ? 8 AC1 12 DT B 7 ? DT B 19 . ? 1_555 ? 9 AC1 12 DT B 8 ? DT B 20 . ? 1_555 ? 10 AC1 12 DC B 9 ? DC B 21 . ? 1_555 ? 11 AC1 12 HOH E . ? HOH B 73 . ? 1_555 ? 12 AC1 12 HOH E . ? HOH B 88 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DC 1 ? ? P A DG 2 ? ? 1.531 1.607 -0.076 0.012 Y 2 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? 1.464 1.516 -0.052 0.008 N 3 1 "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 1.551 1.440 0.111 0.016 N 4 1 P A DC 9 ? ? "O5'" A DC 9 ? ? 1.657 1.593 0.064 0.010 N 5 1 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? 1.379 1.446 -0.067 0.010 N 6 1 N7 A DG 10 ? ? C8 A DG 10 ? ? 1.349 1.305 0.044 0.006 N 7 1 N3 A DC 11 ? ? C4 A DC 11 ? ? 1.386 1.335 0.051 0.007 N 8 1 "C2'" A DG 12 ? ? "C1'" A DG 12 ? ? 1.582 1.519 0.063 0.010 N 9 1 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? 1.385 1.446 -0.061 0.010 N 10 1 "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 1.555 1.512 0.043 0.007 N 11 1 "C5'" B DA 17 ? ? "C4'" B DA 17 ? ? 1.436 1.509 -0.073 0.011 N 12 1 P B DT 19 ? ? "O5'" B DT 19 ? ? 1.688 1.593 0.095 0.010 N 13 1 N3 B DT 19 ? ? C4 B DT 19 ? ? 1.329 1.382 -0.053 0.008 N 14 1 C4 B DT 19 ? ? O4 B DT 19 ? ? 1.282 1.228 0.054 0.009 N 15 1 "O3'" B DC 21 ? ? "C3'" B DC 21 ? ? 1.346 1.419 -0.073 0.006 N 16 1 "O3'" B DC 21 ? ? P B DG 22 ? ? 1.512 1.607 -0.095 0.012 Y 17 1 P B DG 22 ? ? "O5'" B DG 22 ? ? 1.661 1.593 0.068 0.010 N 18 1 C6 B DG 22 ? ? N1 B DG 22 ? ? 1.343 1.391 -0.048 0.007 N 19 1 P B DG 24 ? ? "O5'" B DG 24 ? ? 1.671 1.593 0.078 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 102.13 109.40 -7.27 0.80 N 2 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 99.35 104.50 -5.15 0.40 N 3 1 "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? "O4'" A DG 2 ? ? 118.85 109.80 9.05 1.10 N 4 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 115.65 108.30 7.35 0.30 N 5 1 "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? 101.28 104.50 -3.22 0.40 N 6 1 "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 96.82 102.40 -5.58 0.80 N 7 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 116.41 108.30 8.11 0.30 N 8 1 C2 A DC 3 ? ? N3 A DC 3 ? ? C4 A DC 3 ? ? 123.29 119.90 3.39 0.50 N 9 1 C5 A DC 3 ? ? C6 A DC 3 ? ? N1 A DC 3 ? ? 124.15 121.00 3.15 0.50 N 10 1 N3 A DC 3 ? ? C4 A DC 3 ? ? N4 A DC 3 ? ? 123.25 118.00 5.25 0.70 N 11 1 "O5'" A DG 4 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 121.53 110.70 10.83 1.20 N 12 1 "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 103.03 109.40 -6.37 0.80 N 13 1 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 109.94 120.90 -10.96 1.60 N 14 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 119.31 108.30 11.01 0.30 N 15 1 "O5'" A DA 5 ? ? P A DA 5 ? ? OP2 A DA 5 ? ? 121.73 110.70 11.03 1.20 N 16 1 "O5'" A DA 5 ? ? "C5'" A DA 5 ? ? "C4'" A DA 5 ? ? 100.71 109.40 -8.69 0.80 N 17 1 P A DA 5 ? ? "O5'" A DA 5 ? ? "C5'" A DA 5 ? ? 108.81 120.90 -12.09 1.60 N 18 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? "C2'" A DA 5 ? ? 100.59 105.90 -5.31 0.80 N 19 1 N1 A DA 5 ? ? C2 A DA 5 ? ? N3 A DA 5 ? ? 125.35 129.30 -3.95 0.50 N 20 1 OP1 A DA 6 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 110.30 119.60 -9.30 1.50 N 21 1 "O5'" A DA 6 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 119.45 110.70 8.75 1.20 N 22 1 "O4'" A DA 6 ? ? "C4'" A DA 6 ? ? "C3'" A DA 6 ? ? 97.79 104.50 -6.71 0.40 N 23 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 117.52 108.30 9.22 0.30 N 24 1 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 122.45 118.60 3.85 0.60 N 25 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 125.68 129.30 -3.62 0.50 N 26 1 "O5'" A DT 7 ? ? "C5'" A DT 7 ? ? "C4'" A DT 7 ? ? 104.27 109.40 -5.13 0.80 N 27 1 N1 A DT 7 ? ? C2 A DT 7 ? ? N3 A DT 7 ? ? 118.89 114.60 4.29 0.60 N 28 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 120.58 127.20 -6.62 0.60 N 29 1 N3 A DT 7 ? ? C4 A DT 7 ? ? C5 A DT 7 ? ? 120.17 115.20 4.97 0.60 N 30 1 N3 A DT 7 ? ? C4 A DT 7 ? ? O4 A DT 7 ? ? 116.13 119.90 -3.77 0.60 N 31 1 C6 A DT 7 ? ? N1 A DT 7 ? ? "C1'" A DT 7 ? ? 129.53 120.40 9.13 1.50 N 32 1 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 130.19 119.70 10.49 1.20 Y 33 1 "O5'" A DT 8 ? ? "C5'" A DT 8 ? ? "C4'" A DT 8 ? ? 101.94 109.40 -7.46 0.80 N 34 1 "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? "C2'" A DT 8 ? ? 97.97 102.20 -4.23 0.70 N 35 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.87 108.30 2.57 0.30 N 36 1 "O5'" A DC 9 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 120.55 110.70 9.85 1.20 N 37 1 "O5'" A DC 9 ? ? "C5'" A DC 9 ? ? "C4'" A DC 9 ? ? 103.39 109.40 -6.01 0.80 N 38 1 P A DC 9 ? ? "O5'" A DC 9 ? ? "C5'" A DC 9 ? ? 103.46 120.90 -17.44 1.60 N 39 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 101.88 108.00 -6.12 0.70 N 40 1 P A DG 10 ? ? "O5'" A DG 10 ? ? "C5'" A DG 10 ? ? 110.83 120.90 -10.07 1.60 N 41 1 N3 A DG 10 ? ? C2 A DG 10 ? ? N2 A DG 10 ? ? 114.66 119.90 -5.24 0.70 N 42 1 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P A DC 11 ? ? 135.59 119.70 15.89 1.20 Y 43 1 "O5'" A DC 11 ? ? P A DC 11 ? ? OP2 A DC 11 ? ? 118.57 110.70 7.87 1.20 N 44 1 "O5'" A DC 11 ? ? "C5'" A DC 11 ? ? "C4'" A DC 11 ? ? 102.42 109.40 -6.98 0.80 N 45 1 P A DC 11 ? ? "O5'" A DC 11 ? ? "C5'" A DC 11 ? ? 106.37 120.90 -14.53 1.60 N 46 1 "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? "C1'" A DC 11 ? ? 97.09 102.40 -5.31 0.80 N 47 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 112.18 108.30 3.88 0.30 N 48 1 N1 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 114.96 118.90 -3.94 0.60 N 49 1 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 128.91 121.90 7.01 0.70 N 50 1 "O5'" A DG 12 ? ? "C5'" A DG 12 ? ? "C4'" A DG 12 ? ? 100.87 109.40 -8.53 0.80 N 51 1 "C3'" A DG 12 ? ? "C2'" A DG 12 ? ? "C1'" A DG 12 ? ? 96.52 102.40 -5.88 0.80 N 52 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 117.52 108.30 9.22 0.30 N 53 1 N1 A DG 12 ? ? C6 A DG 12 ? ? O6 A DG 12 ? ? 126.31 119.90 6.41 0.60 N 54 1 C5 A DG 12 ? ? C6 A DG 12 ? ? O6 A DG 12 ? ? 119.98 128.60 -8.62 0.60 N 55 1 C2 B DC 13 ? ? N3 B DC 13 ? ? C4 B DC 13 ? ? 123.05 119.90 3.15 0.50 N 56 1 N3 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 128.73 121.90 6.83 0.70 N 57 1 N3 B DC 13 ? ? C4 B DC 13 ? ? N4 B DC 13 ? ? 125.17 118.00 7.17 0.70 N 58 1 C5 B DC 13 ? ? C4 B DC 13 ? ? N4 B DC 13 ? ? 114.71 120.20 -5.49 0.70 N 59 1 "C3'" B DC 13 ? ? "O3'" B DC 13 ? ? P B DG 14 ? ? 130.86 119.70 11.16 1.20 Y 60 1 N1 B DG 14 ? ? C2 B DG 14 ? ? N3 B DG 14 ? ? 128.41 123.90 4.51 0.60 N 61 1 C2 B DG 14 ? ? N3 B DG 14 ? ? C4 B DG 14 ? ? 108.79 111.90 -3.11 0.50 N 62 1 "O5'" B DC 15 ? ? "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 103.71 109.40 -5.69 0.80 N 63 1 C5 B DG 16 ? ? C6 B DG 16 ? ? O6 B DG 16 ? ? 124.87 128.60 -3.73 0.60 N 64 1 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P B DA 17 ? ? 136.57 119.70 16.87 1.20 Y 65 1 "O5'" B DA 17 ? ? P B DA 17 ? ? OP1 B DA 17 ? ? 98.75 105.70 -6.95 0.90 N 66 1 "O5'" B DA 17 ? ? P B DA 17 ? ? OP2 B DA 17 ? ? 122.09 110.70 11.39 1.20 N 67 1 P B DA 17 ? ? "O5'" B DA 17 ? ? "C5'" B DA 17 ? ? 105.38 120.90 -15.52 1.60 N 68 1 "O4'" B DA 17 ? ? "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? 101.81 104.50 -2.69 0.40 N 69 1 C6 B DA 17 ? ? N1 B DA 17 ? ? C2 B DA 17 ? ? 123.42 118.60 4.82 0.60 N 70 1 C2 B DA 17 ? ? N3 B DA 17 ? ? C4 B DA 17 ? ? 107.30 110.60 -3.30 0.50 N 71 1 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 113.65 117.70 -4.05 0.50 N 72 1 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 122.77 118.60 4.17 0.60 N 73 1 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DA 18 ? ? 136.28 119.70 16.58 1.20 Y 74 1 "C3'" B DA 18 ? ? "C2'" B DA 18 ? ? "C1'" B DA 18 ? ? 94.90 102.40 -7.50 0.80 N 75 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 111.95 108.30 3.65 0.30 N 76 1 C6 B DA 18 ? ? N1 B DA 18 ? ? C2 B DA 18 ? ? 122.49 118.60 3.89 0.60 N 77 1 N1 B DA 18 ? ? C2 B DA 18 ? ? N3 B DA 18 ? ? 124.49 129.30 -4.81 0.50 N 78 1 "C4'" B DT 19 ? ? "C3'" B DT 19 ? ? "C2'" B DT 19 ? ? 96.97 102.20 -5.23 0.70 N 79 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 117.80 108.30 9.50 0.30 N 80 1 C2 B DT 19 ? ? N3 B DT 19 ? ? C4 B DT 19 ? ? 123.44 127.20 -3.76 0.60 N 81 1 N3 B DT 19 ? ? C4 B DT 19 ? ? C5 B DT 19 ? ? 119.40 115.20 4.20 0.60 N 82 1 N3 B DT 19 ? ? C4 B DT 19 ? ? O4 B DT 19 ? ? 113.47 119.90 -6.43 0.60 N 83 1 "O4'" B DT 20 ? ? "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? 98.71 104.50 -5.79 0.40 N 84 1 "C5'" B DT 20 ? ? "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? 123.32 115.70 7.62 1.20 N 85 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 111.39 108.30 3.09 0.30 N 86 1 C2 B DT 20 ? ? N3 B DT 20 ? ? C4 B DT 20 ? ? 123.55 127.20 -3.65 0.60 N 87 1 OP1 B DC 21 ? ? P B DC 21 ? ? OP2 B DC 21 ? ? 108.57 119.60 -11.03 1.50 N 88 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 114.22 108.30 5.92 0.30 N 89 1 C2 B DC 21 ? ? N3 B DC 21 ? ? C4 B DC 21 ? ? 123.44 119.90 3.54 0.50 N 90 1 C5 B DC 21 ? ? C6 B DC 21 ? ? N1 B DC 21 ? ? 124.15 121.00 3.15 0.50 N 91 1 N3 B DC 21 ? ? C4 B DC 21 ? ? N4 B DC 21 ? ? 123.40 118.00 5.40 0.70 N 92 1 "C3'" B DC 21 ? ? "O3'" B DC 21 ? ? P B DG 22 ? ? 148.04 119.70 28.34 1.20 Y 93 1 "O3'" B DC 21 ? ? P B DG 22 ? ? OP1 B DG 22 ? ? 124.53 110.50 14.03 1.10 Y 94 1 OP1 B DG 22 ? ? P B DG 22 ? ? OP2 B DG 22 ? ? 108.15 119.60 -11.45 1.50 N 95 1 "O5'" B DG 22 ? ? "C5'" B DG 22 ? ? "C4'" B DG 22 ? ? 100.50 109.40 -8.90 0.80 N 96 1 "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? 96.78 102.20 -5.42 0.70 N 97 1 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 94.19 102.40 -8.21 0.80 N 98 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 115.39 108.30 7.09 0.30 N 99 1 C2 B DG 22 ? ? N3 B DG 22 ? ? C4 B DG 22 ? ? 108.54 111.90 -3.36 0.50 N 100 1 "C3'" B DG 22 ? ? "O3'" B DG 22 ? ? P B DC 23 ? ? 130.57 119.70 10.87 1.20 Y 101 1 OP1 B DC 23 ? ? P B DC 23 ? ? OP2 B DC 23 ? ? 109.24 119.60 -10.36 1.50 N 102 1 "O5'" B DC 23 ? ? "C5'" B DC 23 ? ? "C4'" B DC 23 ? ? 100.60 109.40 -8.80 0.80 N 103 1 P B DC 23 ? ? "O5'" B DC 23 ? ? "C5'" B DC 23 ? ? 110.76 120.90 -10.14 1.60 N 104 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 121.15 108.30 12.85 0.30 N 105 1 C6 B DG 24 ? ? N1 B DG 24 ? ? C2 B DG 24 ? ? 120.89 125.10 -4.21 0.60 N 106 1 N1 B DG 24 ? ? C6 B DG 24 ? ? O6 B DG 24 ? ? 115.26 119.90 -4.64 0.60 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MINOR GROOVE BINDER' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 HT O1 O N N 147 HT C1 C Y N 148 HT C4 C Y N 149 HT C2 C Y N 150 HT C3 C Y N 151 HT C6 C Y N 152 HT C5 C Y N 153 HT C7 C Y N 154 HT N1 N Y N 155 HT C8 C Y N 156 HT C9 C Y N 157 HT N2 N Y N 158 HT C10 C Y N 159 HT C11 C Y N 160 HT C12 C Y N 161 HT C13 C Y N 162 HT C14 C Y N 163 HT N3 N Y N 164 HT C15 C Y N 165 HT C16 C Y N 166 HT N4 N Y N 167 HT C17 C Y N 168 HT C18 C Y N 169 HT C19 C Y N 170 HT C20 C Y N 171 HT N5 N N N 172 HT C21 C N N 173 HT C22 C N N 174 HT N6 N N N 175 HT C23 C N N 176 HT C24 C N N 177 HT C25 C N N 178 HT HO1 H N N 179 HT H2 H N N 180 HT H3 H N N 181 HT H5 H N N 182 HT H6 H N N 183 HT HN1 H N N 184 HT H10 H N N 185 HT H11 H N N 186 HT H13 H N N 187 HT HN3 H N N 188 HT H17 H N N 189 HT H18 H N N 190 HT H20 H N N 191 HT H211 H N N 192 HT H212 H N N 193 HT H221 H N N 194 HT H222 H N N 195 HT H231 H N N 196 HT H232 H N N 197 HT H241 H N N 198 HT H242 H N N 199 HT H253 H N N 200 HT H252 H N N 201 HT H251 H N N 202 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 HT O1 C1 sing N N 152 HT O1 HO1 sing N N 153 HT C1 C2 doub Y N 154 HT C1 C6 sing Y N 155 HT C2 C3 sing Y N 156 HT C2 H2 sing N N 157 HT C3 C4 doub Y N 158 HT C3 H3 sing N N 159 HT C4 C5 sing Y N 160 HT C4 C7 sing Y N 161 HT C5 C6 doub Y N 162 HT C5 H5 sing N N 163 HT C6 H6 sing N N 164 HT C7 N1 sing Y N 165 HT C7 N2 doub Y N 166 HT N1 C8 sing Y N 167 HT N1 HN1 sing N N 168 HT C8 C9 doub Y N 169 HT C8 C13 sing Y N 170 HT C9 N2 sing Y N 171 HT C9 C10 sing Y N 172 HT C10 C11 doub Y N 173 HT C10 H10 sing N N 174 HT C11 C12 sing Y N 175 HT C11 H11 sing N N 176 HT C12 C13 doub Y N 177 HT C12 C14 sing Y N 178 HT C13 H13 sing N N 179 HT C14 N3 sing Y N 180 HT C14 N4 doub Y N 181 HT N3 C15 sing Y N 182 HT N3 HN3 sing N N 183 HT C15 C16 doub Y N 184 HT C15 C20 sing Y N 185 HT C16 N4 sing Y N 186 HT C16 C17 sing Y N 187 HT C17 C18 doub Y N 188 HT C17 H17 sing N N 189 HT C18 C19 sing Y N 190 HT C18 H18 sing N N 191 HT C19 C20 doub Y N 192 HT C19 N5 sing N N 193 HT C20 H20 sing N N 194 HT N5 C21 sing N N 195 HT N5 C24 sing N N 196 HT C21 C22 sing N N 197 HT C21 H211 sing N N 198 HT C21 H212 sing N N 199 HT C22 N6 sing N N 200 HT C22 H221 sing N N 201 HT C22 H222 sing N N 202 HT N6 C23 sing N N 203 HT N6 C25 sing N N 204 HT C23 C24 sing N N 205 HT C23 H231 sing N N 206 HT C23 H232 sing N N 207 HT C24 H241 sing N N 208 HT C24 H242 sing N N 209 HT C25 H253 sing N N 210 HT C25 H252 sing N N 211 HT C25 H251 sing N N 212 # _ndb_struct_conf_na.entry_id 1DNH _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 -0.451 -0.064 -0.212 15.671 -1.926 1.788 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.292 -0.158 0.395 1.971 -9.919 -2.138 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 -0.222 -0.354 0.241 -3.202 -8.110 -8.117 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.339 -0.416 -0.091 7.637 -2.984 -5.889 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 -0.158 -0.215 0.006 4.521 -9.383 0.916 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.908 -0.242 -0.229 -2.431 -27.971 -1.882 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.203 -0.249 -0.866 9.997 -16.544 -3.146 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 0.869 -0.295 -0.377 -12.082 -6.287 5.500 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 -0.111 -0.262 -0.199 -10.315 -8.325 -1.656 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 0.035 -0.195 -0.022 5.380 -7.226 4.702 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.486 -0.400 0.672 -0.234 -20.574 -4.665 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.716 -0.603 -0.294 -7.376 -6.978 -5.790 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.246 0.450 3.654 -4.991 0.771 42.194 0.533 -0.229 3.666 1.067 6.902 42.482 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.310 0.352 3.706 4.687 -3.137 36.552 1.035 0.228 3.675 -4.965 -7.418 36.969 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.192 0.747 3.255 1.768 3.379 32.170 0.741 0.657 3.299 6.070 -3.177 32.390 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.048 -0.383 3.389 -0.139 5.038 31.420 -1.645 0.061 3.289 9.229 0.254 31.812 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.317 -0.033 3.449 0.701 1.889 47.173 -0.204 0.456 3.441 2.359 -0.875 47.214 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.511 -0.733 2.822 5.265 0.072 24.617 -1.700 0.185 2.865 0.166 -12.171 25.165 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.025 -0.089 4.033 -0.988 4.735 41.880 -0.725 -0.091 4.000 6.597 1.377 42.146 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 0.102 0.041 3.031 0.071 5.777 33.914 -0.768 -0.162 2.997 9.814 -0.120 34.388 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.401 1.875 3.196 -3.598 -0.828 33.428 3.371 -1.260 3.092 -1.434 6.231 33.625 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.228 0.435 3.772 -8.115 -11.410 38.922 2.061 0.715 3.682 -16.488 11.726 41.272 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 0.337 0.416 3.568 11.883 5.426 31.306 -0.269 1.573 3.486 9.551 -20.917 33.859 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 1DNH _atom_sites.fract_transf_matrix[1][1] 0.039635 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024643 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015133 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text 'NO DISORDERED DRUG' # loop_ _atom_type.symbol C N O P # loop_