data_1DNK # _entry.id 1DNK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DNK pdb_00001dnk 10.2210/pdb1dnk/pdb RCSB PDE005 ? ? WWPDB D_1000172860 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-01-31 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2024-10-23 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Database references' 11 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' database_PDB_caveat 4 4 'Structure model' entity 5 4 'Structure model' pdbx_branch_scheme 6 4 'Structure model' pdbx_chem_comp_identifier 7 4 'Structure model' pdbx_entity_branch 8 4 'Structure model' pdbx_entity_branch_descriptor 9 4 'Structure model' pdbx_entity_branch_link 10 4 'Structure model' pdbx_entity_branch_list 11 4 'Structure model' pdbx_entity_nonpoly 12 4 'Structure model' pdbx_nonpoly_scheme 13 4 'Structure model' pdbx_struct_assembly_gen 14 4 'Structure model' pdbx_validate_chiral 15 4 'Structure model' pdbx_validate_close_contact 16 4 'Structure model' pdbx_validate_symm_contact 17 4 'Structure model' struct_asym 18 4 'Structure model' struct_conn 19 4 'Structure model' struct_site 20 4 'Structure model' struct_site_gen 21 5 'Structure model' chem_comp 22 5 'Structure model' chem_comp_atom 23 5 'Structure model' chem_comp_bond 24 5 'Structure model' database_2 25 5 'Structure model' pdbx_entry_details 26 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_asym_id' 2 4 'Structure model' '_atom_site.auth_seq_id' 3 4 'Structure model' '_atom_site.label_asym_id' 4 4 'Structure model' '_chem_comp.name' 5 4 'Structure model' '_chem_comp.type' 6 4 'Structure model' '_entity.formula_weight' 7 4 'Structure model' '_entity.pdbx_description' 8 4 'Structure model' '_entity.pdbx_number_of_molecules' 9 4 'Structure model' '_entity.type' 10 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 11 4 'Structure model' '_pdbx_validate_chiral.auth_asym_id' 12 4 'Structure model' '_pdbx_validate_chiral.auth_seq_id' 13 4 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2' 14 4 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 15 4 'Structure model' '_pdbx_validate_symm_contact.auth_asym_id_2' 16 4 'Structure model' '_pdbx_validate_symm_contact.auth_seq_id_2' 17 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 4 'Structure model' '_struct_conn.pdbx_role' 19 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 33 5 'Structure model' '_chem_comp.pdbx_synonyms' 34 5 'Structure model' '_database_2.pdbx_DOI' 35 5 'Structure model' '_database_2.pdbx_database_accession' 36 5 'Structure model' '_pdbx_entry_details.has_protein_modification' # _database_PDB_caveat.id 1 _database_PDB_caveat.text 'NAG D 1 HAS WRONG CHIRALITY AT ATOM C2' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DNK _pdbx_database_status.recvd_initial_deposition_date 1992-08-10 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Weston, S.A.' 1 'Lahm, A.' 2 'Suck, D.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'X-ray structure of the DNase I-d(GGTATACC)2 complex at 2.3 A resolution.' J.Mol.Biol. 226 1237 1256 1992 JMOBAK UK 0022-2836 0070 ? 1518054 '10.1016/0022-2836(92)91064-V' 1 'DNAse I induced DNA conformation: 2 Angstroms structure of a DNAse-octamer complex' J.Mol.Biol. 222 645 ? 1991 JMOBAK UK 0022-2836 0070 ? ? ? 2 'Structure refined to 2 Angstroms of a nicked DNA octanucleotide complex with DNAse I' Nature 332 465 ? 1988 NATUAS UK 0028-0836 0006 ? ? ? 3 'Structure of DNase I at 2.0 Angstroms resolution suggests a mechanism for binding to and cutting DNA' Nature 321 620 ? 1986 NATUAS UK 0028-0836 0006 ? ? ? 4 'Crystallographic refinement and structure of DNAse I at 2 Angstroms resolution' J.Mol.Biol. 192 605 ? 1986 JMOBAK UK 0022-2836 0070 ? ? ? 5 'Three-dimensional structure of bovine pancreatic DNAse I at 2.5 Angstroms resolution' 'Embo J.' 3 2423 ? 1984 EMJODG UK 0261-4189 0897 ? ? ? 6 'Crystallization and preliminary crystallographic data of bovine pancreatic deoxyribonuclease I' J.Mol.Biol. 162 511 ? 1982 JMOBAK UK 0022-2836 0070 ? ? ? 7 'Bovine pancreatic deoxyribonuclease A. Isolation of cyanogen bromide peptides, complete covalent structure of the polypeptide chain' J.Biol.Chem. 248 1489 ? 1973 JBCHA3 US 0021-9258 0071 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Weston, S.A.' 1 ? primary 'Lahm, A.' 2 ? primary 'Suck, D.' 3 ? 1 'Lahm, A.' 4 ? 1 'Suck, D.' 5 ? 2 'Suck, D.' 6 ? 2 'Lahm, A.' 7 ? 2 'Oefner, C.' 8 ? 3 'Suck, D.' 9 ? 3 'Oefner, C.' 10 ? 4 'Oefner, C.' 11 ? 4 'Suck, D.' 12 ? 5 'Suck, D.' 13 ? 5 'Oefner, C.' 14 ? 5 'Kabsch, W.' 15 ? 6 'Suck, D.' 16 ? 7 'Liao, T.-H.' 17 ? 7 'Salnikow, J.' 18 ? 7 'Moore, S.' 19 ? 7 'Stein, W.H.' 20 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*GP*TP*AP*TP*AP*C)-3') ; 2137.435 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*GP*TP*AP*TP*AP*CP*C)-3') ; 2426.617 1 ? ? ? ? 3 polymer nat 'PROTEIN (DEOXYRIBONUCLEASE I (DNASE I) (E.C.3.1.21.1))' 29092.574 1 ? ? ? ? 4 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 5 water nat water 18.015 77 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DG)(DT)(DA)(DT)(DA)(DC)' GGTATAC B ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DT)(DA)(DT)(DA)(DC)(DC)' GGTATACC C ? 3 'polypeptide(L)' no no ;LKIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERY LFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSDAVAEINSLYDVYLDVQQKWHL NDVMLMGDFNADCSYVTSSQWSSIRLRTSSTFQWLIPDSADTTATSTNCAYDRIVVAGSLLQSSVVPGSAAPFDFQAAYG LSNEMALAISDHYPVEVTLT ; ;LKIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERY LFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSDAVAEINSLYDVYLDVQQKWHL NDVMLMGDFNADCSYVTSSQWSSIRLRTSSTFQWLIPDSADTTATSTNCAYDRIVVAGSLLQSSVVPGSAAPFDFQAAYG LSNEMALAISDHYPVEVTLT ; A ? # _pdbx_entity_nonpoly.entity_id 5 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DT n 1 6 DA n 1 7 DC n 2 1 DG n 2 2 DG n 2 3 DT n 2 4 DA n 2 5 DT n 2 6 DA n 2 7 DC n 2 8 DC n 3 1 LEU n 3 2 LYS n 3 3 ILE n 3 4 ALA n 3 5 ALA n 3 6 PHE n 3 7 ASN n 3 8 ILE n 3 9 ARG n 3 10 THR n 3 11 PHE n 3 12 GLY n 3 13 GLU n 3 14 THR n 3 15 LYS n 3 16 MET n 3 17 SER n 3 18 ASN n 3 19 ALA n 3 20 THR n 3 21 LEU n 3 22 ALA n 3 23 SER n 3 24 TYR n 3 25 ILE n 3 26 VAL n 3 27 ARG n 3 28 ILE n 3 29 VAL n 3 30 ARG n 3 31 ARG n 3 32 TYR n 3 33 ASP n 3 34 ILE n 3 35 VAL n 3 36 LEU n 3 37 ILE n 3 38 GLN n 3 39 GLU n 3 40 VAL n 3 41 ARG n 3 42 ASP n 3 43 SER n 3 44 HIS n 3 45 LEU n 3 46 VAL n 3 47 ALA n 3 48 VAL n 3 49 GLY n 3 50 LYS n 3 51 LEU n 3 52 LEU n 3 53 ASP n 3 54 TYR n 3 55 LEU n 3 56 ASN n 3 57 GLN n 3 58 ASP n 3 59 ASP n 3 60 PRO n 3 61 ASN n 3 62 THR n 3 63 TYR n 3 64 HIS n 3 65 TYR n 3 66 VAL n 3 67 VAL n 3 68 SER n 3 69 GLU n 3 70 PRO n 3 71 LEU n 3 72 GLY n 3 73 ARG n 3 74 ASN n 3 75 SER n 3 76 TYR n 3 77 LYS n 3 78 GLU n 3 79 ARG n 3 80 TYR n 3 81 LEU n 3 82 PHE n 3 83 LEU n 3 84 PHE n 3 85 ARG n 3 86 PRO n 3 87 ASN n 3 88 LYS n 3 89 VAL n 3 90 SER n 3 91 VAL n 3 92 LEU n 3 93 ASP n 3 94 THR n 3 95 TYR n 3 96 GLN n 3 97 TYR n 3 98 ASP n 3 99 ASP n 3 100 GLY n 3 101 CYS n 3 102 GLU n 3 103 SER n 3 104 CYS n 3 105 GLY n 3 106 ASN n 3 107 ASP n 3 108 SER n 3 109 PHE n 3 110 SER n 3 111 ARG n 3 112 GLU n 3 113 PRO n 3 114 ALA n 3 115 VAL n 3 116 VAL n 3 117 LYS n 3 118 PHE n 3 119 SER n 3 120 SER n 3 121 HIS n 3 122 SER n 3 123 THR n 3 124 LYS n 3 125 VAL n 3 126 LYS n 3 127 GLU n 3 128 PHE n 3 129 ALA n 3 130 ILE n 3 131 VAL n 3 132 ALA n 3 133 LEU n 3 134 HIS n 3 135 SER n 3 136 ALA n 3 137 PRO n 3 138 SER n 3 139 ASP n 3 140 ALA n 3 141 VAL n 3 142 ALA n 3 143 GLU n 3 144 ILE n 3 145 ASN n 3 146 SER n 3 147 LEU n 3 148 TYR n 3 149 ASP n 3 150 VAL n 3 151 TYR n 3 152 LEU n 3 153 ASP n 3 154 VAL n 3 155 GLN n 3 156 GLN n 3 157 LYS n 3 158 TRP n 3 159 HIS n 3 160 LEU n 3 161 ASN n 3 162 ASP n 3 163 VAL n 3 164 MET n 3 165 LEU n 3 166 MET n 3 167 GLY n 3 168 ASP n 3 169 PHE n 3 170 ASN n 3 171 ALA n 3 172 ASP n 3 173 CYS n 3 174 SER n 3 175 TYR n 3 176 VAL n 3 177 THR n 3 178 SER n 3 179 SER n 3 180 GLN n 3 181 TRP n 3 182 SER n 3 183 SER n 3 184 ILE n 3 185 ARG n 3 186 LEU n 3 187 ARG n 3 188 THR n 3 189 SER n 3 190 SER n 3 191 THR n 3 192 PHE n 3 193 GLN n 3 194 TRP n 3 195 LEU n 3 196 ILE n 3 197 PRO n 3 198 ASP n 3 199 SER n 3 200 ALA n 3 201 ASP n 3 202 THR n 3 203 THR n 3 204 ALA n 3 205 THR n 3 206 SER n 3 207 THR n 3 208 ASN n 3 209 CYS n 3 210 ALA n 3 211 TYR n 3 212 ASP n 3 213 ARG n 3 214 ILE n 3 215 VAL n 3 216 VAL n 3 217 ALA n 3 218 GLY n 3 219 SER n 3 220 LEU n 3 221 LEU n 3 222 GLN n 3 223 SER n 3 224 SER n 3 225 VAL n 3 226 VAL n 3 227 PRO n 3 228 GLY n 3 229 SER n 3 230 ALA n 3 231 ALA n 3 232 PRO n 3 233 PHE n 3 234 ASP n 3 235 PHE n 3 236 GLN n 3 237 ALA n 3 238 ALA n 3 239 TYR n 3 240 GLY n 3 241 LEU n 3 242 SER n 3 243 ASN n 3 244 GLU n 3 245 MET n 3 246 ALA n 3 247 LEU n 3 248 ALA n 3 249 ILE n 3 250 SER n 3 251 ASP n 3 252 HIS n 3 253 TYR n 3 254 PRO n 3 255 VAL n 3 256 GLU n 3 257 VAL n 3 258 THR n 3 259 LEU n 3 260 THR n # _entity_src_nat.entity_id 3 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name cattle _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9913 _entity_src_nat.genus Bos _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion MILK _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ PANCREAS _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 4 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 4 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 4 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 301 301 DG G B . n A 1 2 DG 2 302 302 DG G B . n A 1 3 DT 3 303 303 DT T B . n A 1 4 DA 4 304 304 DA A B . n A 1 5 DT 5 305 305 DT T B . n A 1 6 DA 6 306 306 DA A B . n A 1 7 DC 7 307 307 DC C B . n B 2 1 DG 1 309 309 DG G C . n B 2 2 DG 2 310 310 DG G C . n B 2 3 DT 3 311 311 DT T C . n B 2 4 DA 4 312 312 DA A C . n B 2 5 DT 5 313 313 DT T C . n B 2 6 DA 6 314 314 DA A C . n B 2 7 DC 7 315 315 DC C C . n B 2 8 DC 8 316 316 DC C C . n C 3 1 LEU 1 1 1 LEU LEU A . n C 3 2 LYS 2 2 2 LYS LYS A . n C 3 3 ILE 3 3 3 ILE ILE A . n C 3 4 ALA 4 4 4 ALA ALA A . n C 3 5 ALA 5 5 5 ALA ALA A . n C 3 6 PHE 6 6 6 PHE PHE A . n C 3 7 ASN 7 7 7 ASN ASN A . n C 3 8 ILE 8 8 8 ILE ILE A . n C 3 9 ARG 9 9 9 ARG ARG A . n C 3 10 THR 10 10 10 THR THR A . n C 3 11 PHE 11 11 11 PHE PHE A . n C 3 12 GLY 12 12 12 GLY GLY A . n C 3 13 GLU 13 13 13 GLU GLU A . n C 3 14 THR 14 14 14 THR THR A . n C 3 15 LYS 15 15 15 LYS LYS A . n C 3 16 MET 16 16 16 MET MET A . n C 3 17 SER 17 17 17 SER SER A . n C 3 18 ASN 18 18 18 ASN ASN A . n C 3 19 ALA 19 19 19 ALA ALA A . n C 3 20 THR 20 20 20 THR THR A . n C 3 21 LEU 21 21 21 LEU LEU A . n C 3 22 ALA 22 22 22 ALA ALA A . n C 3 23 SER 23 23 23 SER SER A . n C 3 24 TYR 24 24 24 TYR TYR A . n C 3 25 ILE 25 25 25 ILE ILE A . n C 3 26 VAL 26 26 26 VAL VAL A . n C 3 27 ARG 27 27 27 ARG ARG A . n C 3 28 ILE 28 28 28 ILE ILE A . n C 3 29 VAL 29 29 29 VAL VAL A . n C 3 30 ARG 30 30 30 ARG ARG A . n C 3 31 ARG 31 31 31 ARG ARG A . n C 3 32 TYR 32 32 32 TYR TYR A . n C 3 33 ASP 33 33 33 ASP ASP A . n C 3 34 ILE 34 34 34 ILE ILE A . n C 3 35 VAL 35 35 35 VAL VAL A . n C 3 36 LEU 36 36 36 LEU LEU A . n C 3 37 ILE 37 37 37 ILE ILE A . n C 3 38 GLN 38 38 38 GLN GLN A . n C 3 39 GLU 39 39 39 GLU GLU A . n C 3 40 VAL 40 40 40 VAL VAL A . n C 3 41 ARG 41 41 41 ARG ARG A . n C 3 42 ASP 42 42 42 ASP ASP A . n C 3 43 SER 43 43 43 SER SER A . n C 3 44 HIS 44 44 44 HIS HIS A . n C 3 45 LEU 45 45 45 LEU LEU A . n C 3 46 VAL 46 46 46 VAL VAL A . n C 3 47 ALA 47 47 47 ALA ALA A . n C 3 48 VAL 48 48 48 VAL VAL A . n C 3 49 GLY 49 49 49 GLY GLY A . n C 3 50 LYS 50 50 50 LYS LYS A . n C 3 51 LEU 51 51 51 LEU LEU A . n C 3 52 LEU 52 52 52 LEU LEU A . n C 3 53 ASP 53 53 53 ASP ASP A . n C 3 54 TYR 54 54 54 TYR TYR A . n C 3 55 LEU 55 55 55 LEU LEU A . n C 3 56 ASN 56 56 56 ASN ASN A . n C 3 57 GLN 57 57 57 GLN GLN A . n C 3 58 ASP 58 58 58 ASP ASP A . n C 3 59 ASP 59 59 59 ASP ASP A . n C 3 60 PRO 60 60 60 PRO PRO A . n C 3 61 ASN 61 61 61 ASN ASN A . n C 3 62 THR 62 62 62 THR THR A . n C 3 63 TYR 63 63 63 TYR TYR A . n C 3 64 HIS 64 64 64 HIS HIS A . n C 3 65 TYR 65 65 65 TYR TYR A . n C 3 66 VAL 66 66 66 VAL VAL A . n C 3 67 VAL 67 67 67 VAL VAL A . n C 3 68 SER 68 68 68 SER SER A . n C 3 69 GLU 69 69 69 GLU GLU A . n C 3 70 PRO 70 70 70 PRO PRO A . n C 3 71 LEU 71 71 71 LEU LEU A . n C 3 72 GLY 72 72 72 GLY GLY A . n C 3 73 ARG 73 73 73 ARG ARG A . n C 3 74 ASN 74 74 74 ASN ASN A . n C 3 75 SER 75 75 75 SER SER A . n C 3 76 TYR 76 76 76 TYR TYR A . n C 3 77 LYS 77 77 77 LYS LYS A . n C 3 78 GLU 78 78 78 GLU GLU A . n C 3 79 ARG 79 79 79 ARG ARG A . n C 3 80 TYR 80 80 80 TYR TYR A . n C 3 81 LEU 81 81 81 LEU LEU A . n C 3 82 PHE 82 82 82 PHE PHE A . n C 3 83 LEU 83 83 83 LEU LEU A . n C 3 84 PHE 84 84 84 PHE PHE A . n C 3 85 ARG 85 85 85 ARG ARG A . n C 3 86 PRO 86 86 86 PRO PRO A . n C 3 87 ASN 87 87 87 ASN ASN A . n C 3 88 LYS 88 88 88 LYS LYS A . n C 3 89 VAL 89 89 89 VAL VAL A . n C 3 90 SER 90 90 90 SER SER A . n C 3 91 VAL 91 91 91 VAL VAL A . n C 3 92 LEU 92 92 92 LEU LEU A . n C 3 93 ASP 93 93 93 ASP ASP A . n C 3 94 THR 94 94 94 THR THR A . n C 3 95 TYR 95 95 95 TYR TYR A . n C 3 96 GLN 96 96 96 GLN GLN A . n C 3 97 TYR 97 97 97 TYR TYR A . n C 3 98 ASP 98 98 ? ? ? A . n C 3 99 ASP 99 99 ? ? ? A . n C 3 100 GLY 100 100 ? ? ? A . n C 3 101 CYS 101 101 ? ? ? A . n C 3 102 GLU 102 102 ? ? ? A . n C 3 103 SER 103 103 ? ? ? A . n C 3 104 CYS 104 104 ? ? ? A . n C 3 105 GLY 105 105 ? ? ? A . n C 3 106 ASN 106 106 ? ? ? A . n C 3 107 ASP 107 107 ? ? ? A . n C 3 108 SER 108 108 108 SER SER A . n C 3 109 PHE 109 109 109 PHE PHE A . n C 3 110 SER 110 110 110 SER SER A . n C 3 111 ARG 111 111 111 ARG ARG A . n C 3 112 GLU 112 112 112 GLU GLU A . n C 3 113 PRO 113 113 113 PRO PRO A . n C 3 114 ALA 114 114 114 ALA ALA A . n C 3 115 VAL 115 115 115 VAL VAL A . n C 3 116 VAL 116 116 116 VAL VAL A . n C 3 117 LYS 117 117 117 LYS LYS A . n C 3 118 PHE 118 118 118 PHE PHE A . n C 3 119 SER 119 119 119 SER SER A . n C 3 120 SER 120 120 120 SER SER A . n C 3 121 HIS 121 121 121 HIS HIS A . n C 3 122 SER 122 122 122 SER SER A . n C 3 123 THR 123 123 123 THR THR A . n C 3 124 LYS 124 124 124 LYS LYS A . n C 3 125 VAL 125 125 125 VAL VAL A . n C 3 126 LYS 126 126 126 LYS LYS A . n C 3 127 GLU 127 127 127 GLU GLU A . n C 3 128 PHE 128 128 128 PHE PHE A . n C 3 129 ALA 129 129 129 ALA ALA A . n C 3 130 ILE 130 130 130 ILE ILE A . n C 3 131 VAL 131 131 131 VAL VAL A . n C 3 132 ALA 132 132 132 ALA ALA A . n C 3 133 LEU 133 133 133 LEU LEU A . n C 3 134 HIS 134 134 134 HIS HIS A . n C 3 135 SER 135 135 135 SER SER A . n C 3 136 ALA 136 136 136 ALA ALA A . n C 3 137 PRO 137 137 137 PRO PRO A . n C 3 138 SER 138 138 138 SER SER A . n C 3 139 ASP 139 139 139 ASP ASP A . n C 3 140 ALA 140 140 140 ALA ALA A . n C 3 141 VAL 141 141 141 VAL VAL A . n C 3 142 ALA 142 142 142 ALA ALA A . n C 3 143 GLU 143 143 143 GLU GLU A . n C 3 144 ILE 144 144 144 ILE ILE A . n C 3 145 ASN 145 145 145 ASN ASN A . n C 3 146 SER 146 146 146 SER SER A . n C 3 147 LEU 147 147 147 LEU LEU A . n C 3 148 TYR 148 148 148 TYR TYR A . n C 3 149 ASP 149 149 149 ASP ASP A . n C 3 150 VAL 150 150 150 VAL VAL A . n C 3 151 TYR 151 151 151 TYR TYR A . n C 3 152 LEU 152 152 152 LEU LEU A . n C 3 153 ASP 153 153 153 ASP ASP A . n C 3 154 VAL 154 154 154 VAL VAL A . n C 3 155 GLN 155 155 155 GLN GLN A . n C 3 156 GLN 156 156 156 GLN GLN A . n C 3 157 LYS 157 157 157 LYS LYS A . n C 3 158 TRP 158 158 158 TRP TRP A . n C 3 159 HIS 159 159 159 HIS HIS A . n C 3 160 LEU 160 160 160 LEU LEU A . n C 3 161 ASN 161 161 161 ASN ASN A . n C 3 162 ASP 162 162 162 ASP ASP A . n C 3 163 VAL 163 163 163 VAL VAL A . n C 3 164 MET 164 164 164 MET MET A . n C 3 165 LEU 165 165 165 LEU LEU A . n C 3 166 MET 166 166 166 MET MET A . n C 3 167 GLY 167 167 167 GLY GLY A . n C 3 168 ASP 168 168 168 ASP ASP A . n C 3 169 PHE 169 169 169 PHE PHE A . n C 3 170 ASN 170 170 170 ASN ASN A . n C 3 171 ALA 171 171 171 ALA ALA A . n C 3 172 ASP 172 172 172 ASP ASP A . n C 3 173 CYS 173 173 173 CYS CYS A . n C 3 174 SER 174 174 174 SER SER A . n C 3 175 TYR 175 175 175 TYR TYR A . n C 3 176 VAL 176 176 176 VAL VAL A . n C 3 177 THR 177 177 177 THR THR A . n C 3 178 SER 178 178 178 SER SER A . n C 3 179 SER 179 179 179 SER SER A . n C 3 180 GLN 180 180 180 GLN GLN A . n C 3 181 TRP 181 181 181 TRP TRP A . n C 3 182 SER 182 182 182 SER SER A . n C 3 183 SER 183 183 183 SER SER A . n C 3 184 ILE 184 184 184 ILE ILE A . n C 3 185 ARG 185 185 185 ARG ARG A . n C 3 186 LEU 186 186 186 LEU LEU A . n C 3 187 ARG 187 187 187 ARG ARG A . n C 3 188 THR 188 188 188 THR THR A . n C 3 189 SER 189 189 189 SER SER A . n C 3 190 SER 190 190 190 SER SER A . n C 3 191 THR 191 191 191 THR THR A . n C 3 192 PHE 192 192 192 PHE PHE A . n C 3 193 GLN 193 193 193 GLN GLN A . n C 3 194 TRP 194 194 194 TRP TRP A . n C 3 195 LEU 195 195 195 LEU LEU A . n C 3 196 ILE 196 196 196 ILE ILE A . n C 3 197 PRO 197 197 197 PRO PRO A . n C 3 198 ASP 198 198 198 ASP ASP A . n C 3 199 SER 199 199 199 SER SER A . n C 3 200 ALA 200 200 200 ALA ALA A . n C 3 201 ASP 201 201 201 ASP ASP A . n C 3 202 THR 202 202 202 THR THR A . n C 3 203 THR 203 203 203 THR THR A . n C 3 204 ALA 204 204 204 ALA ALA A . n C 3 205 THR 205 205 205 THR THR A . n C 3 206 SER 206 206 206 SER SER A . n C 3 207 THR 207 207 207 THR THR A . n C 3 208 ASN 208 208 208 ASN ASN A . n C 3 209 CYS 209 209 209 CYS CYS A . n C 3 210 ALA 210 210 210 ALA ALA A . n C 3 211 TYR 211 211 211 TYR TYR A . n C 3 212 ASP 212 212 212 ASP ASP A . n C 3 213 ARG 213 213 213 ARG ARG A . n C 3 214 ILE 214 214 214 ILE ILE A . n C 3 215 VAL 215 215 215 VAL VAL A . n C 3 216 VAL 216 216 216 VAL VAL A . n C 3 217 ALA 217 217 217 ALA ALA A . n C 3 218 GLY 218 218 218 GLY GLY A . n C 3 219 SER 219 219 219 SER SER A . n C 3 220 LEU 220 220 220 LEU LEU A . n C 3 221 LEU 221 221 221 LEU LEU A . n C 3 222 GLN 222 222 222 GLN GLN A . n C 3 223 SER 223 223 223 SER SER A . n C 3 224 SER 224 224 224 SER SER A . n C 3 225 VAL 225 225 225 VAL VAL A . n C 3 226 VAL 226 226 226 VAL VAL A . n C 3 227 PRO 227 227 227 PRO PRO A . n C 3 228 GLY 228 228 228 GLY GLY A . n C 3 229 SER 229 229 229 SER SER A . n C 3 230 ALA 230 230 230 ALA ALA A . n C 3 231 ALA 231 231 231 ALA ALA A . n C 3 232 PRO 232 232 232 PRO PRO A . n C 3 233 PHE 233 233 233 PHE PHE A . n C 3 234 ASP 234 234 234 ASP ASP A . n C 3 235 PHE 235 235 235 PHE PHE A . n C 3 236 GLN 236 236 236 GLN GLN A . n C 3 237 ALA 237 237 237 ALA ALA A . n C 3 238 ALA 238 238 238 ALA ALA A . n C 3 239 TYR 239 239 239 TYR TYR A . n C 3 240 GLY 240 240 240 GLY GLY A . n C 3 241 LEU 241 241 241 LEU LEU A . n C 3 242 SER 242 242 242 SER SER A . n C 3 243 ASN 243 243 243 ASN ASN A . n C 3 244 GLU 244 244 244 GLU GLU A . n C 3 245 MET 245 245 245 MET MET A . n C 3 246 ALA 246 246 246 ALA ALA A . n C 3 247 LEU 247 247 247 LEU LEU A . n C 3 248 ALA 248 248 248 ALA ALA A . n C 3 249 ILE 249 249 249 ILE ILE A . n C 3 250 SER 250 250 250 SER SER A . n C 3 251 ASP 251 251 251 ASP ASP A . n C 3 252 HIS 252 252 252 HIS HIS A . n C 3 253 TYR 253 253 253 TYR TYR A . n C 3 254 PRO 254 254 254 PRO PRO A . n C 3 255 VAL 255 255 255 VAL VAL A . n C 3 256 GLU 256 256 256 GLU GLU A . n C 3 257 VAL 257 257 257 VAL VAL A . n C 3 258 THR 258 258 258 THR THR A . n C 3 259 LEU 259 259 259 LEU LEU A . n C 3 260 THR 260 260 260 THR THR A . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero D 4 NAG 1 D NAG 1 A NAG 261 n D 4 NAG 2 D NAG 2 ? NAG 262 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HOH 1 450 450 HOH HOH B . E 5 HOH 2 458 458 HOH HOH B . E 5 HOH 3 476 476 HOH HOH B . F 5 HOH 1 403 403 HOH HOH C . F 5 HOH 2 465 465 HOH HOH C . F 5 HOH 3 467 467 HOH HOH C . F 5 HOH 4 475 475 HOH HOH C . G 5 HOH 1 400 400 HOH HOH A . G 5 HOH 2 401 401 HOH HOH A . G 5 HOH 3 402 402 HOH HOH A . G 5 HOH 4 404 404 HOH HOH A . G 5 HOH 5 405 405 HOH HOH A . G 5 HOH 6 406 406 HOH HOH A . G 5 HOH 7 407 407 HOH HOH A . G 5 HOH 8 408 408 HOH HOH A . G 5 HOH 9 409 409 HOH HOH A . G 5 HOH 10 410 410 HOH HOH A . G 5 HOH 11 411 411 HOH HOH A . G 5 HOH 12 412 412 HOH HOH A . G 5 HOH 13 413 413 HOH HOH A . G 5 HOH 14 414 414 HOH HOH A . G 5 HOH 15 415 415 HOH HOH A . G 5 HOH 16 416 416 HOH HOH A . G 5 HOH 17 417 417 HOH HOH A . G 5 HOH 18 418 418 HOH HOH A . G 5 HOH 19 419 419 HOH HOH A . G 5 HOH 20 420 420 HOH HOH A . G 5 HOH 21 421 421 HOH HOH A . G 5 HOH 22 422 422 HOH HOH A . G 5 HOH 23 423 423 HOH HOH A . G 5 HOH 24 424 424 HOH HOH A . G 5 HOH 25 425 425 HOH HOH A . G 5 HOH 26 426 426 HOH HOH A . G 5 HOH 27 427 427 HOH HOH A . G 5 HOH 28 428 428 HOH HOH A . G 5 HOH 29 429 429 HOH HOH A . G 5 HOH 30 430 430 HOH HOH A . G 5 HOH 31 431 431 HOH HOH A . G 5 HOH 32 432 432 HOH HOH A . G 5 HOH 33 433 433 HOH HOH A . G 5 HOH 34 434 434 HOH HOH A . G 5 HOH 35 435 435 HOH HOH A . G 5 HOH 36 436 436 HOH HOH A . G 5 HOH 37 437 437 HOH HOH A . G 5 HOH 38 438 438 HOH HOH A . G 5 HOH 39 439 439 HOH HOH A . G 5 HOH 40 440 440 HOH HOH A . G 5 HOH 41 441 441 HOH HOH A . G 5 HOH 42 442 442 HOH HOH A . G 5 HOH 43 443 443 HOH HOH A . G 5 HOH 44 444 444 HOH HOH A . G 5 HOH 45 445 445 HOH HOH A . G 5 HOH 46 446 446 HOH HOH A . G 5 HOH 47 447 447 HOH HOH A . G 5 HOH 48 448 448 HOH HOH A . G 5 HOH 49 449 449 HOH HOH A . G 5 HOH 50 451 451 HOH HOH A . G 5 HOH 51 452 452 HOH HOH A . G 5 HOH 52 453 453 HOH HOH A . G 5 HOH 53 454 454 HOH HOH A . G 5 HOH 54 455 455 HOH HOH A . G 5 HOH 55 456 456 HOH HOH A . G 5 HOH 56 457 457 HOH HOH A . G 5 HOH 57 459 459 HOH HOH A . G 5 HOH 58 460 460 HOH HOH A . G 5 HOH 59 461 461 HOH HOH A . G 5 HOH 60 462 462 HOH HOH A . G 5 HOH 61 463 463 HOH HOH A . G 5 HOH 62 464 464 HOH HOH A . G 5 HOH 63 466 466 HOH HOH A . G 5 HOH 64 468 468 HOH HOH A . G 5 HOH 65 469 469 HOH HOH A . G 5 HOH 66 470 470 HOH HOH A . G 5 HOH 67 471 471 HOH HOH A . G 5 HOH 68 472 472 HOH HOH A . G 5 HOH 69 473 473 HOH HOH A . G 5 HOH 70 474 474 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal TNT refinement . ? 1 PROLSQ refinement . ? 2 # _cell.entry_id 1DNK _cell.length_a 51.100 _cell.length_b 108.400 _cell.length_c 62.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DNK _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # _exptl.entry_id 1DNK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 51.60 _exptl_crystal.density_Matthews 2.54 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION, HANGING DROP, temperature 293.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 EDTA ? ? ? 1 3 2 WATER ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DNK _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 3.000 _reflns.d_resolution_low 18.890 _reflns.d_resolution_high 2.300 _reflns.number_obs 12681 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.076 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 1DNK _refine.ls_number_reflns_obs 11998 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.000 _refine.ls_d_res_high 2.300 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.188 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1982 _refine_hist.pdbx_number_atoms_nucleic_acid 303 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 77 _refine_hist.number_atoms_total 2390 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 6.000 # _database_PDB_matrix.entry_id 1DNK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1DNK _struct.title 'THE X-RAY STRUCTURE OF THE DNASE I-D(GGTATACC)2 COMPLEX AT 2.3 ANGSTROMS RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DNK _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, DOUBLE HELIX, HYDROLASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # loop_ _struct_ref.id _struct_ref.db_code _struct_ref.db_name _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 DRN1_BOVIN UNP 3 P00639 ? ? ? 2 1DNK PDB 1 1DNK ? ? ? 3 1DNK PDB 2 1DNK ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DNK A 1 ? 260 ? P00639 23 ? 282 ? 1 260 2 2 1DNK B 1 ? 7 ? 1DNK 301 ? 307 ? 301 307 3 3 1DNK C 1 ? 8 ? 1DNK 309 ? 316 ? 309 316 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 ? GLU C 13 ? MET C 16 ? GLU A 13 MET A 16 1 ? 4 HELX_P HELX_P2 ? ALA C 19 ? ARG C 30 ? ALA A 19 ARG A 30 1 ? 12 HELX_P HELX_P3 ? VAL C 46 ? LEU C 55 ? VAL A 46 LEU A 55 1 ? 10 HELX_P HELX_P4 ? ASP C 139 ? LEU C 147 ? ASP A 139 LEU A 147 1 ? 9 HELX_P HELX_P5 ? TYR C 148 ? TRP C 158 ? TYR A 148 TRP A 158 1 'CONTIGUOUS WITH HELIX H4A' 11 HELX_P HELX_P6 ? ARG C 185 ? THR C 188 ? ARG A 185 THR A 188 1 ? 4 HELX_P HELX_P7 ? SER C 219 ? SER C 224 ? SER A 219 SER A 224 1 ? 6 HELX_P HELX_P8 ? PHE C 235 ? TYR C 239 ? PHE A 235 TYR A 239 1 ? 5 HELX_P HELX_P9 ? ASN C 243 ? ILE C 249 ? ASN A 243 ILE A 249 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? C CYS 173 SG ? ? ? 1_555 C CYS 209 SG ? ? A CYS 173 A CYS 209 1_555 ? ? ? ? ? ? ? 2.077 ? ? covale1 covale one ? C ASN 18 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 18 D NAG 1 1_555 ? ? ? ? ? ? ? 1.523 ? N-Glycosylation covale2 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? D NAG 1 D NAG 2 1_555 ? ? ? ? ? ? ? 1.518 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 8 N3 ? ? B DG 301 C DC 316 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 8 O2 ? ? B DG 301 C DC 316 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 8 N4 ? ? B DG 301 C DC 316 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 7 N3 ? ? B DG 302 C DC 315 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 7 O2 ? ? B DG 302 C DC 315 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 7 N4 ? ? B DG 302 C DC 315 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 6 N1 ? ? B DT 303 C DA 314 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 6 N6 ? ? B DT 303 C DA 314 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 5 N3 ? ? B DA 304 C DT 313 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 5 O4 ? ? B DA 304 C DT 313 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 4 N1 ? ? B DT 305 C DA 312 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 4 N6 ? ? B DT 305 C DA 312 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 3 N3 ? ? B DA 306 C DT 311 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 3 O4 ? ? B DA 306 C DT 311 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 2 N1 ? ? B DC 307 C DG 310 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 2 O6 ? ? B DC 307 C DG 310 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 2 N2 ? ? B DC 307 C DG 310 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? hydrog ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG D . ? ASN C 18 ? NAG D 1 ? 1_555 ASN A 18 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 CYS C 173 ? CYS C 209 ? CYS A 173 ? 1_555 CYS A 209 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details S1 ? 6 ? S2 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense S1 1 2 ? anti-parallel S1 2 3 ? anti-parallel S1 3 4 ? parallel S1 4 5 ? anti-parallel S1 5 6 ? anti-parallel S2 1 2 ? anti-parallel S2 2 3 ? anti-parallel S2 3 4 ? parallel S2 4 5 ? anti-parallel S2 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id S1 1 ALA C 231 ? PRO C 232 ? ALA A 231 PRO A 232 S1 2 VAL C 255 ? LEU C 259 ? VAL A 255 LEU A 259 S1 3 LYS C 2 ? PHE C 11 ? LYS A 2 PHE A 11 S1 4 ILE C 34 ? VAL C 40 ? ILE A 34 VAL A 40 S1 5 ARG C 79 ? PHE C 84 ? ARG A 79 PHE A 84 S1 6 HIS C 64 ? VAL C 67 ? HIS A 64 VAL A 67 S2 1 VAL C 89 ? GLN C 96 ? VAL A 89 GLN A 96 S2 2 ALA C 114 ? SER C 120 ? ALA A 114 SER A 120 S2 3 LYS C 126 ? ALA C 132 ? LYS A 126 ALA A 132 S2 4 VAL C 163 ? ASP C 168 ? VAL A 163 ASP A 168 S2 5 ASP C 212 ? ALA C 217 ? ASP A 212 ALA A 217 S2 6 GLN C 193 ? TRP C 194 ? GLN A 193 TRP A 194 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id S1 1 2 N ALA C 231 ? N ALA A 231 O GLU C 256 ? O GLU A 256 S1 2 3 N VAL C 255 ? N VAL A 255 O ALA C 5 ? O ALA A 5 S1 3 4 N PHE C 6 ? N PHE A 6 O LEU C 36 ? O LEU A 36 S1 4 5 N ILE C 37 ? N ILE A 37 O LEU C 81 ? O LEU A 81 S1 5 6 N PHE C 82 ? N PHE A 82 O VAL C 66 ? O VAL A 66 S2 1 2 N TYR C 95 ? N TYR A 95 O VAL C 115 ? O VAL A 115 S2 2 3 N VAL C 116 ? N VAL A 116 O ILE C 130 ? O ILE A 130 S2 3 4 N VAL C 131 ? N VAL A 131 O MET C 166 ? O MET A 166 S2 4 5 N LEU C 165 ? N LEU A 165 O VAL C 215 ? O VAL A 215 S2 5 6 N VAL C 216 ? N VAL A 216 O GLN C 193 ? O GLN A 193 # _struct_site.id ACT _struct_site.pdbx_evidence_code Unknown _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 ACT 5 GLU C 39 ? GLU A 39 . ? 1_555 ? 2 ACT 5 GLU C 78 ? GLU A 78 . ? 1_555 ? 3 ACT 5 HIS C 134 ? HIS A 134 . ? 1_555 ? 4 ACT 5 ASP C 212 ? ASP A 212 . ? 1_555 ? 5 ACT 5 HIS C 252 ? HIS A 252 . ? 1_555 ? # _pdbx_entry_details.entry_id 1DNK _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;OF THE CARBOHYDRATE MOIETY ATTACHED TO ND2 ASN 18, ONLY THE FIRST TWO RESIDUES WERE VISIBLE IN THE ELECTRON DENSITY MAP. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 ND2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 18 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O5 _pdbx_validate_close_contact.auth_asym_id_2 D _pdbx_validate_close_contact.auth_comp_id_2 NAG _pdbx_validate_close_contact.auth_seq_id_2 1 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 CA _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLY _pdbx_validate_symm_contact.auth_seq_id_1 228 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O7 _pdbx_validate_symm_contact.auth_asym_id_2 D _pdbx_validate_symm_contact.auth_comp_id_2 NAG _pdbx_validate_symm_contact.auth_seq_id_2 2 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_455 _pdbx_validate_symm_contact.dist 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C3'" B DG 301 ? ? "C2'" B DG 301 ? ? 1.605 1.518 0.087 0.012 N 2 1 P B DT 305 ? ? "O5'" B DT 305 ? ? 1.658 1.593 0.065 0.010 N 3 1 "C2'" B DC 307 ? ? "C1'" B DC 307 ? ? 1.601 1.519 0.082 0.010 N 4 1 "C3'" C DG 309 ? ? "C2'" C DG 309 ? ? 1.600 1.518 0.082 0.012 N 5 1 "C2'" C DG 309 ? ? "C1'" C DG 309 ? ? 1.586 1.519 0.067 0.010 N 6 1 P C DG 310 ? ? "O5'" C DG 310 ? ? 1.683 1.593 0.090 0.010 N 7 1 "C2'" C DG 310 ? ? "C1'" C DG 310 ? ? 1.594 1.519 0.075 0.010 N 8 1 P C DT 311 ? ? "O5'" C DT 311 ? ? 1.659 1.593 0.066 0.010 N 9 1 "C2'" C DA 312 ? ? "C1'" C DA 312 ? ? 1.580 1.519 0.061 0.010 N 10 1 "C5'" C DA 314 ? ? "C4'" C DA 314 ? ? 1.555 1.512 0.043 0.007 N 11 1 C6 C DA 314 ? ? N1 C DA 314 ? ? 1.302 1.351 -0.049 0.007 N 12 1 "O3'" C DC 315 ? ? "C3'" C DC 315 ? ? 1.372 1.419 -0.047 0.006 N 13 1 P C DC 316 ? ? "O5'" C DC 316 ? ? 1.655 1.593 0.062 0.010 N 14 1 C A THR 260 ? ? OXT A THR 260 ? ? 4.402 1.229 3.173 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DG 301 ? ? "C4'" B DG 301 ? ? "C3'" B DG 301 ? ? 98.87 104.50 -5.63 0.40 N 2 1 "C3'" B DG 301 ? ? "C2'" B DG 301 ? ? "C1'" B DG 301 ? ? 91.68 102.40 -10.72 0.80 N 3 1 "O4'" B DG 301 ? ? "C1'" B DG 301 ? ? "C2'" B DG 301 ? ? 110.48 106.80 3.68 0.50 N 4 1 "C3'" B DG 302 ? ? "C2'" B DG 302 ? ? "C1'" B DG 302 ? ? 94.39 102.40 -8.01 0.80 N 5 1 "O4'" B DG 302 ? ? "C1'" B DG 302 ? ? "C2'" B DG 302 ? ? 111.53 106.80 4.73 0.50 N 6 1 "C3'" B DT 303 ? ? "C2'" B DT 303 ? ? "C1'" B DT 303 ? ? 96.90 102.40 -5.50 0.80 N 7 1 "O4'" B DT 303 ? ? "C1'" B DT 303 ? ? "C2'" B DT 303 ? ? 111.78 106.80 4.98 0.50 N 8 1 C6 B DT 303 ? ? C5 B DT 303 ? ? C7 B DT 303 ? ? 117.80 122.90 -5.10 0.60 N 9 1 "O5'" B DA 304 ? ? "C5'" B DA 304 ? ? "C4'" B DA 304 ? ? 103.93 109.40 -5.47 0.80 N 10 1 "O4'" B DA 304 ? ? "C4'" B DA 304 ? ? "C3'" B DA 304 ? ? 101.43 104.50 -3.07 0.40 N 11 1 "C3'" B DA 304 ? ? "C2'" B DA 304 ? ? "C1'" B DA 304 ? ? 95.55 102.40 -6.85 0.80 N 12 1 "O4'" B DA 304 ? ? "C1'" B DA 304 ? ? "C2'" B DA 304 ? ? 112.48 106.80 5.68 0.50 N 13 1 "O5'" B DT 305 ? ? "C5'" B DT 305 ? ? "C4'" B DT 305 ? ? 102.42 109.40 -6.98 0.80 N 14 1 "O5'" B DA 306 ? ? "C5'" B DA 306 ? ? "C4'" B DA 306 ? ? 101.89 109.40 -7.51 0.80 N 15 1 "C4'" B DA 306 ? ? "C3'" B DA 306 ? ? "C2'" B DA 306 ? ? 109.23 103.10 6.13 0.90 N 16 1 "O4'" B DA 306 ? ? "C1'" B DA 306 ? ? N9 B DA 306 ? ? 101.97 108.00 -6.03 0.70 N 17 1 C2 B DA 306 ? ? N3 B DA 306 ? ? C4 B DA 306 ? ? 114.52 110.60 3.92 0.50 N 18 1 "C1'" B DC 307 ? ? "O4'" B DC 307 ? ? "C4'" B DC 307 ? ? 102.74 110.10 -7.36 1.00 N 19 1 "C3'" B DC 307 ? ? "C2'" B DC 307 ? ? "C1'" B DC 307 ? ? 95.48 102.40 -6.92 0.80 N 20 1 "O4'" B DC 307 ? ? "C1'" B DC 307 ? ? N1 B DC 307 ? ? 114.06 108.30 5.76 0.30 N 21 1 N1 B DC 307 ? ? C2 B DC 307 ? ? N3 B DC 307 ? ? 124.41 119.20 5.21 0.70 N 22 1 C2 B DC 307 ? ? N3 B DC 307 ? ? C4 B DC 307 ? ? 114.73 119.90 -5.17 0.50 N 23 1 C4 B DC 307 ? ? C5 B DC 307 ? ? C6 B DC 307 ? ? 123.02 117.40 5.62 0.50 N 24 1 C5 B DC 307 ? ? C6 B DC 307 ? ? N1 B DC 307 ? ? 115.67 121.00 -5.33 0.50 N 25 1 "C3'" C DG 309 ? ? "C2'" C DG 309 ? ? "C1'" C DG 309 ? ? 91.20 102.40 -11.20 0.80 N 26 1 "O4'" C DG 309 ? ? "C1'" C DG 309 ? ? "C2'" C DG 309 ? ? 110.07 106.80 3.27 0.50 N 27 1 C6 C DG 309 ? ? C5 C DG 309 ? ? N7 C DG 309 ? ? 126.68 130.40 -3.72 0.60 N 28 1 N3 C DG 309 ? ? C2 C DG 309 ? ? N2 C DG 309 ? ? 124.34 119.90 4.44 0.70 N 29 1 "C3'" C DG 309 ? ? "O3'" C DG 309 ? ? P C DG 310 ? ? 131.39 119.70 11.69 1.20 Y 30 1 "C3'" C DG 310 ? ? "C2'" C DG 310 ? ? "C1'" C DG 310 ? ? 95.84 102.40 -6.56 0.80 N 31 1 C6 C DG 310 ? ? N1 C DG 310 ? ? C2 C DG 310 ? ? 119.53 125.10 -5.57 0.60 N 32 1 N3 C DG 310 ? ? C4 C DG 310 ? ? C5 C DG 310 ? ? 123.57 128.60 -5.03 0.50 N 33 1 "C4'" C DT 311 ? ? "C3'" C DT 311 ? ? "C2'" C DT 311 ? ? 109.13 103.10 6.03 0.90 N 34 1 "C3'" C DT 311 ? ? "C2'" C DT 311 ? ? "C1'" C DT 311 ? ? 93.39 102.40 -9.01 0.80 N 35 1 "O4'" C DT 311 ? ? "C1'" C DT 311 ? ? N1 C DT 311 ? ? 103.19 108.00 -4.81 0.70 N 36 1 C6 C DT 311 ? ? N1 C DT 311 ? ? C2 C DT 311 ? ? 125.60 121.30 4.30 0.50 N 37 1 C2 C DT 311 ? ? N3 C DT 311 ? ? C4 C DT 311 ? ? 122.37 127.20 -4.83 0.60 N 38 1 C5 C DT 311 ? ? C6 C DT 311 ? ? N1 C DT 311 ? ? 117.38 123.70 -6.32 0.60 N 39 1 C6 C DT 311 ? ? C5 C DT 311 ? ? C7 C DT 311 ? ? 117.93 122.90 -4.97 0.60 N 40 1 "C1'" C DA 312 ? ? "O4'" C DA 312 ? ? "C4'" C DA 312 ? ? 104.06 110.10 -6.04 1.00 N 41 1 "C3'" C DA 312 ? ? "C2'" C DA 312 ? ? "C1'" C DA 312 ? ? 96.54 102.40 -5.86 0.80 N 42 1 C4 C DA 312 ? ? C5 C DA 312 ? ? C6 C DA 312 ? ? 120.19 117.00 3.19 0.50 N 43 1 C5 C DA 312 ? ? C6 C DA 312 ? ? N1 C DA 312 ? ? 113.46 117.70 -4.24 0.50 N 44 1 "C3'" C DA 312 ? ? "O3'" C DA 312 ? ? P C DT 313 ? ? 127.15 119.70 7.45 1.20 Y 45 1 "O4'" C DT 313 ? ? "C1'" C DT 313 ? ? "C2'" C DT 313 ? ? 111.13 106.80 4.33 0.50 N 46 1 "O4'" C DT 313 ? ? "C1'" C DT 313 ? ? N1 C DT 313 ? ? 110.59 108.30 2.29 0.30 N 47 1 C4 C DT 313 ? ? C5 C DT 313 ? ? C6 C DT 313 ? ? 121.96 118.00 3.96 0.60 N 48 1 N3 C DT 313 ? ? C2 C DT 313 ? ? O2 C DT 313 ? ? 117.62 122.30 -4.68 0.60 N 49 1 C6 C DT 313 ? ? C5 C DT 313 ? ? C7 C DT 313 ? ? 118.79 122.90 -4.11 0.60 N 50 1 "O4'" C DA 314 ? ? "C4'" C DA 314 ? ? "C3'" C DA 314 ? ? 110.79 106.00 4.79 0.60 N 51 1 "O4'" C DA 314 ? ? "C1'" C DA 314 ? ? "C2'" C DA 314 ? ? 110.44 106.80 3.64 0.50 N 52 1 "O4'" C DA 314 ? ? "C1'" C DA 314 ? ? N9 C DA 314 ? ? 110.17 108.30 1.87 0.30 N 53 1 C4 C DA 314 ? ? C5 C DA 314 ? ? C6 C DA 314 ? ? 120.24 117.00 3.24 0.50 N 54 1 N1 C DA 314 ? ? C6 C DA 314 ? ? N6 C DA 314 ? ? 124.83 118.60 6.23 0.60 N 55 1 C5 C DA 314 ? ? C6 C DA 314 ? ? N6 C DA 314 ? ? 118.20 123.70 -5.50 0.80 N 56 1 OP1 C DC 315 ? ? P C DC 315 ? ? OP2 C DC 315 ? ? 107.00 119.60 -12.60 1.50 N 57 1 "O4'" C DC 315 ? ? "C4'" C DC 315 ? ? "C3'" C DC 315 ? ? 101.95 104.50 -2.55 0.40 N 58 1 "C3'" C DC 315 ? ? "C2'" C DC 315 ? ? "C1'" C DC 315 ? ? 95.35 102.40 -7.05 0.80 N 59 1 "O4'" C DC 315 ? ? "C1'" C DC 315 ? ? N1 C DC 315 ? ? 111.04 108.30 2.74 0.30 N 60 1 N1 C DC 315 ? ? C2 C DC 315 ? ? O2 C DC 315 ? ? 124.87 118.90 5.97 0.60 N 61 1 N3 C DC 315 ? ? C2 C DC 315 ? ? O2 C DC 315 ? ? 117.14 121.90 -4.76 0.70 N 62 1 "C3'" C DC 315 ? ? "O3'" C DC 315 ? ? P C DC 316 ? ? 128.73 119.70 9.03 1.20 Y 63 1 "C4'" C DC 316 ? ? "C3'" C DC 316 ? ? "C2'" C DC 316 ? ? 109.37 103.10 6.27 0.90 N 64 1 "O4'" C DC 316 ? ? "C1'" C DC 316 ? ? "C2'" C DC 316 ? ? 112.32 106.80 5.52 0.50 N 65 1 C4 C DC 316 ? ? C5 C DC 316 ? ? C6 C DC 316 ? ? 121.15 117.40 3.75 0.50 N 66 1 C5 C DC 316 ? ? C6 C DC 316 ? ? N1 C DC 316 ? ? 117.79 121.00 -3.21 0.50 N 67 1 OD1 A ASN 18 ? ? CG A ASN 18 ? ? ND2 A ASN 18 ? ? 138.73 121.90 16.83 2.30 N 68 1 CD A ARG 30 ? ? NE A ARG 30 ? ? CZ A ARG 30 ? ? 140.68 123.60 17.08 1.40 N 69 1 NE A ARG 30 ? ? CZ A ARG 30 ? ? NH1 A ARG 30 ? ? 128.93 120.30 8.63 0.50 N 70 1 NE A ARG 31 ? ? CZ A ARG 31 ? ? NH2 A ARG 31 ? ? 123.82 120.30 3.52 0.50 N 71 1 CG A GLU 69 ? ? CD A GLU 69 ? ? OE1 A GLU 69 ? ? 132.49 118.30 14.19 2.00 N 72 1 CG A GLU 69 ? ? CD A GLU 69 ? ? OE2 A GLU 69 ? ? 104.01 118.30 -14.29 2.00 N 73 1 NE A ARG 73 ? ? CZ A ARG 73 ? ? NH2 A ARG 73 ? ? 124.87 120.30 4.57 0.50 N 74 1 NE A ARG 79 ? ? CZ A ARG 79 ? ? NH1 A ARG 79 ? ? 126.83 120.30 6.53 0.50 N 75 1 NE A ARG 79 ? ? CZ A ARG 79 ? ? NH2 A ARG 79 ? ? 116.46 120.30 -3.84 0.50 N 76 1 NE A ARG 85 ? ? CZ A ARG 85 ? ? NH1 A ARG 85 ? ? 114.51 120.30 -5.79 0.50 N 77 1 NE A ARG 85 ? ? CZ A ARG 85 ? ? NH2 A ARG 85 ? ? 127.94 120.30 7.64 0.50 N 78 1 N A VAL 89 ? ? CA A VAL 89 ? ? CB A VAL 89 ? ? 94.63 111.50 -16.87 2.20 N 79 1 NE A ARG 111 ? ? CZ A ARG 111 ? ? NH1 A ARG 111 ? ? 127.52 120.30 7.22 0.50 N 80 1 NE A ARG 111 ? ? CZ A ARG 111 ? ? NH2 A ARG 111 ? ? 117.01 120.30 -3.29 0.50 N 81 1 CB A ASP 168 ? ? CG A ASP 168 ? ? OD2 A ASP 168 ? ? 125.54 118.30 7.24 0.90 N 82 1 CA A PHE 169 ? ? CB A PHE 169 ? ? CG A PHE 169 ? ? 129.63 113.90 15.73 2.40 N 83 1 NE A ARG 185 ? ? CZ A ARG 185 ? ? NH1 A ARG 185 ? ? 129.12 120.30 8.82 0.50 N 84 1 NE A ARG 185 ? ? CZ A ARG 185 ? ? NH2 A ARG 185 ? ? 114.14 120.30 -6.16 0.50 N 85 1 NE A ARG 187 ? ? CZ A ARG 187 ? ? NH1 A ARG 187 ? ? 126.03 120.30 5.73 0.50 N 86 1 NE A ARG 187 ? ? CZ A ARG 187 ? ? NH2 A ARG 187 ? ? 116.82 120.30 -3.48 0.50 N 87 1 CB A SER 224 ? ? CA A SER 224 ? ? C A SER 224 ? ? 123.09 110.10 12.99 1.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 10 ? ? 37.74 56.71 2 1 GLU A 39 ? ? 71.47 43.99 3 1 ARG A 41 ? ? -107.58 78.70 4 1 LEU A 45 ? ? 49.50 23.99 5 1 ASP A 59 ? ? -170.33 135.28 6 1 ASN A 74 ? ? -122.25 -142.91 7 1 ASP A 93 ? ? 175.59 162.57 8 1 ALA A 171 ? ? -79.11 45.55 9 1 CYS A 173 ? ? 44.91 -125.02 10 1 ASN A 208 ? ? -112.50 73.37 11 1 SER A 250 ? ? 177.82 150.53 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C2 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id D _pdbx_validate_chiral.auth_comp_id NAG _pdbx_validate_chiral.auth_seq_id 1 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id C _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 18 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 18 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 98 ? C ASP 98 2 1 Y 1 A ASP 99 ? C ASP 99 3 1 Y 1 A GLY 100 ? C GLY 100 4 1 Y 1 A CYS 101 ? C CYS 101 5 1 Y 1 A GLU 102 ? C GLU 102 6 1 Y 1 A SER 103 ? C SER 103 7 1 Y 1 A CYS 104 ? C CYS 104 8 1 Y 1 A GLY 105 ? C GLY 105 9 1 Y 1 A ASN 106 ? C ASN 106 10 1 Y 1 A ASP 107 ? C ASP 107 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 NAG C1 C N R 393 NAG C2 C N R 394 NAG C3 C N R 395 NAG C4 C N S 396 NAG C5 C N R 397 NAG C6 C N N 398 NAG C7 C N N 399 NAG C8 C N N 400 NAG N2 N N N 401 NAG O1 O N N 402 NAG O3 O N N 403 NAG O4 O N N 404 NAG O5 O N N 405 NAG O6 O N N 406 NAG O7 O N N 407 NAG H1 H N N 408 NAG H2 H N N 409 NAG H3 H N N 410 NAG H4 H N N 411 NAG H5 H N N 412 NAG H61 H N N 413 NAG H62 H N N 414 NAG H81 H N N 415 NAG H82 H N N 416 NAG H83 H N N 417 NAG HN2 H N N 418 NAG HO1 H N N 419 NAG HO3 H N N 420 NAG HO4 H N N 421 NAG HO6 H N N 422 PHE N N N N 423 PHE CA C N S 424 PHE C C N N 425 PHE O O N N 426 PHE CB C N N 427 PHE CG C Y N 428 PHE CD1 C Y N 429 PHE CD2 C Y N 430 PHE CE1 C Y N 431 PHE CE2 C Y N 432 PHE CZ C Y N 433 PHE OXT O N N 434 PHE H H N N 435 PHE H2 H N N 436 PHE HA H N N 437 PHE HB2 H N N 438 PHE HB3 H N N 439 PHE HD1 H N N 440 PHE HD2 H N N 441 PHE HE1 H N N 442 PHE HE2 H N N 443 PHE HZ H N N 444 PHE HXT H N N 445 PRO N N N N 446 PRO CA C N S 447 PRO C C N N 448 PRO O O N N 449 PRO CB C N N 450 PRO CG C N N 451 PRO CD C N N 452 PRO OXT O N N 453 PRO H H N N 454 PRO HA H N N 455 PRO HB2 H N N 456 PRO HB3 H N N 457 PRO HG2 H N N 458 PRO HG3 H N N 459 PRO HD2 H N N 460 PRO HD3 H N N 461 PRO HXT H N N 462 SER N N N N 463 SER CA C N S 464 SER C C N N 465 SER O O N N 466 SER CB C N N 467 SER OG O N N 468 SER OXT O N N 469 SER H H N N 470 SER H2 H N N 471 SER HA H N N 472 SER HB2 H N N 473 SER HB3 H N N 474 SER HG H N N 475 SER HXT H N N 476 THR N N N N 477 THR CA C N S 478 THR C C N N 479 THR O O N N 480 THR CB C N R 481 THR OG1 O N N 482 THR CG2 C N N 483 THR OXT O N N 484 THR H H N N 485 THR H2 H N N 486 THR HA H N N 487 THR HB H N N 488 THR HG1 H N N 489 THR HG21 H N N 490 THR HG22 H N N 491 THR HG23 H N N 492 THR HXT H N N 493 TRP N N N N 494 TRP CA C N S 495 TRP C C N N 496 TRP O O N N 497 TRP CB C N N 498 TRP CG C Y N 499 TRP CD1 C Y N 500 TRP CD2 C Y N 501 TRP NE1 N Y N 502 TRP CE2 C Y N 503 TRP CE3 C Y N 504 TRP CZ2 C Y N 505 TRP CZ3 C Y N 506 TRP CH2 C Y N 507 TRP OXT O N N 508 TRP H H N N 509 TRP H2 H N N 510 TRP HA H N N 511 TRP HB2 H N N 512 TRP HB3 H N N 513 TRP HD1 H N N 514 TRP HE1 H N N 515 TRP HE3 H N N 516 TRP HZ2 H N N 517 TRP HZ3 H N N 518 TRP HH2 H N N 519 TRP HXT H N N 520 TYR N N N N 521 TYR CA C N S 522 TYR C C N N 523 TYR O O N N 524 TYR CB C N N 525 TYR CG C Y N 526 TYR CD1 C Y N 527 TYR CD2 C Y N 528 TYR CE1 C Y N 529 TYR CE2 C Y N 530 TYR CZ C Y N 531 TYR OH O N N 532 TYR OXT O N N 533 TYR H H N N 534 TYR H2 H N N 535 TYR HA H N N 536 TYR HB2 H N N 537 TYR HB3 H N N 538 TYR HD1 H N N 539 TYR HD2 H N N 540 TYR HE1 H N N 541 TYR HE2 H N N 542 TYR HH H N N 543 TYR HXT H N N 544 VAL N N N N 545 VAL CA C N S 546 VAL C C N N 547 VAL O O N N 548 VAL CB C N N 549 VAL CG1 C N N 550 VAL CG2 C N N 551 VAL OXT O N N 552 VAL H H N N 553 VAL H2 H N N 554 VAL HA H N N 555 VAL HB H N N 556 VAL HG11 H N N 557 VAL HG12 H N N 558 VAL HG13 H N N 559 VAL HG21 H N N 560 VAL HG22 H N N 561 VAL HG23 H N N 562 VAL HXT H N N 563 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 NAG C1 C2 sing N N 386 NAG C1 O1 sing N N 387 NAG C1 O5 sing N N 388 NAG C1 H1 sing N N 389 NAG C2 C3 sing N N 390 NAG C2 N2 sing N N 391 NAG C2 H2 sing N N 392 NAG C3 C4 sing N N 393 NAG C3 O3 sing N N 394 NAG C3 H3 sing N N 395 NAG C4 C5 sing N N 396 NAG C4 O4 sing N N 397 NAG C4 H4 sing N N 398 NAG C5 C6 sing N N 399 NAG C5 O5 sing N N 400 NAG C5 H5 sing N N 401 NAG C6 O6 sing N N 402 NAG C6 H61 sing N N 403 NAG C6 H62 sing N N 404 NAG C7 C8 sing N N 405 NAG C7 N2 sing N N 406 NAG C7 O7 doub N N 407 NAG C8 H81 sing N N 408 NAG C8 H82 sing N N 409 NAG C8 H83 sing N N 410 NAG N2 HN2 sing N N 411 NAG O1 HO1 sing N N 412 NAG O3 HO3 sing N N 413 NAG O4 HO4 sing N N 414 NAG O6 HO6 sing N N 415 PHE N CA sing N N 416 PHE N H sing N N 417 PHE N H2 sing N N 418 PHE CA C sing N N 419 PHE CA CB sing N N 420 PHE CA HA sing N N 421 PHE C O doub N N 422 PHE C OXT sing N N 423 PHE CB CG sing N N 424 PHE CB HB2 sing N N 425 PHE CB HB3 sing N N 426 PHE CG CD1 doub Y N 427 PHE CG CD2 sing Y N 428 PHE CD1 CE1 sing Y N 429 PHE CD1 HD1 sing N N 430 PHE CD2 CE2 doub Y N 431 PHE CD2 HD2 sing N N 432 PHE CE1 CZ doub Y N 433 PHE CE1 HE1 sing N N 434 PHE CE2 CZ sing Y N 435 PHE CE2 HE2 sing N N 436 PHE CZ HZ sing N N 437 PHE OXT HXT sing N N 438 PRO N CA sing N N 439 PRO N CD sing N N 440 PRO N H sing N N 441 PRO CA C sing N N 442 PRO CA CB sing N N 443 PRO CA HA sing N N 444 PRO C O doub N N 445 PRO C OXT sing N N 446 PRO CB CG sing N N 447 PRO CB HB2 sing N N 448 PRO CB HB3 sing N N 449 PRO CG CD sing N N 450 PRO CG HG2 sing N N 451 PRO CG HG3 sing N N 452 PRO CD HD2 sing N N 453 PRO CD HD3 sing N N 454 PRO OXT HXT sing N N 455 SER N CA sing N N 456 SER N H sing N N 457 SER N H2 sing N N 458 SER CA C sing N N 459 SER CA CB sing N N 460 SER CA HA sing N N 461 SER C O doub N N 462 SER C OXT sing N N 463 SER CB OG sing N N 464 SER CB HB2 sing N N 465 SER CB HB3 sing N N 466 SER OG HG sing N N 467 SER OXT HXT sing N N 468 THR N CA sing N N 469 THR N H sing N N 470 THR N H2 sing N N 471 THR CA C sing N N 472 THR CA CB sing N N 473 THR CA HA sing N N 474 THR C O doub N N 475 THR C OXT sing N N 476 THR CB OG1 sing N N 477 THR CB CG2 sing N N 478 THR CB HB sing N N 479 THR OG1 HG1 sing N N 480 THR CG2 HG21 sing N N 481 THR CG2 HG22 sing N N 482 THR CG2 HG23 sing N N 483 THR OXT HXT sing N N 484 TRP N CA sing N N 485 TRP N H sing N N 486 TRP N H2 sing N N 487 TRP CA C sing N N 488 TRP CA CB sing N N 489 TRP CA HA sing N N 490 TRP C O doub N N 491 TRP C OXT sing N N 492 TRP CB CG sing N N 493 TRP CB HB2 sing N N 494 TRP CB HB3 sing N N 495 TRP CG CD1 doub Y N 496 TRP CG CD2 sing Y N 497 TRP CD1 NE1 sing Y N 498 TRP CD1 HD1 sing N N 499 TRP CD2 CE2 doub Y N 500 TRP CD2 CE3 sing Y N 501 TRP NE1 CE2 sing Y N 502 TRP NE1 HE1 sing N N 503 TRP CE2 CZ2 sing Y N 504 TRP CE3 CZ3 doub Y N 505 TRP CE3 HE3 sing N N 506 TRP CZ2 CH2 doub Y N 507 TRP CZ2 HZ2 sing N N 508 TRP CZ3 CH2 sing Y N 509 TRP CZ3 HZ3 sing N N 510 TRP CH2 HH2 sing N N 511 TRP OXT HXT sing N N 512 TYR N CA sing N N 513 TYR N H sing N N 514 TYR N H2 sing N N 515 TYR CA C sing N N 516 TYR CA CB sing N N 517 TYR CA HA sing N N 518 TYR C O doub N N 519 TYR C OXT sing N N 520 TYR CB CG sing N N 521 TYR CB HB2 sing N N 522 TYR CB HB3 sing N N 523 TYR CG CD1 doub Y N 524 TYR CG CD2 sing Y N 525 TYR CD1 CE1 sing Y N 526 TYR CD1 HD1 sing N N 527 TYR CD2 CE2 doub Y N 528 TYR CD2 HD2 sing N N 529 TYR CE1 CZ doub Y N 530 TYR CE1 HE1 sing N N 531 TYR CE2 CZ sing Y N 532 TYR CE2 HE2 sing N N 533 TYR CZ OH sing N N 534 TYR OH HH sing N N 535 TYR OXT HXT sing N N 536 VAL N CA sing N N 537 VAL N H sing N N 538 VAL N H2 sing N N 539 VAL CA C sing N N 540 VAL CA CB sing N N 541 VAL CA HA sing N N 542 VAL C O doub N N 543 VAL C OXT sing N N 544 VAL CB CG1 sing N N 545 VAL CB CG2 sing N N 546 VAL CB HB sing N N 547 VAL CG1 HG11 sing N N 548 VAL CG1 HG12 sing N N 549 VAL CG1 HG13 sing N N 550 VAL CG2 HG21 sing N N 551 VAL CG2 HG22 sing N N 552 VAL CG2 HG23 sing N N 553 VAL OXT HXT sing N N 554 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1DNK 'double helix' 1DNK 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 8 1_555 -0.257 -0.494 -0.056 -0.850 -6.598 -3.988 1 B_DG301:DC316_C B 301 ? C 316 ? 19 1 1 A DG 2 1_555 B DC 7 1_555 -0.449 -0.213 -0.146 -15.297 -18.260 -1.327 2 B_DG302:DC315_C B 302 ? C 315 ? 19 1 1 A DT 3 1_555 B DA 6 1_555 -0.077 -0.053 0.290 -11.804 -12.729 8.301 3 B_DT303:DA314_C B 303 ? C 314 ? 20 1 1 A DA 4 1_555 B DT 5 1_555 0.002 -0.357 0.308 -9.971 -10.894 -5.611 4 B_DA304:DT313_C B 304 ? C 313 ? 20 1 1 A DT 5 1_555 B DA 4 1_555 0.244 -0.549 0.077 3.969 -2.594 -3.946 5 B_DT305:DA312_C B 305 ? C 312 ? 20 1 1 A DA 6 1_555 B DT 3 1_555 1.146 -0.088 0.473 11.731 -4.680 2.119 6 B_DA306:DT311_C B 306 ? C 311 ? 20 1 1 A DC 7 1_555 B DG 2 1_555 0.164 -0.534 0.231 5.464 -7.053 -8.553 7 B_DC307:DG310_C B 307 ? C 310 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 8 1_555 A DG 2 1_555 B DC 7 1_555 0.452 -1.716 3.584 1.596 9.818 34.413 -4.248 -0.499 3.015 16.180 -2.630 35.780 1 BB_DG301DG302:DC315DC316_CC B 301 ? C 316 ? B 302 ? C 315 ? 1 A DG 2 1_555 B DC 7 1_555 A DT 3 1_555 B DA 6 1_555 -0.229 -0.836 3.383 -1.281 3.693 29.157 -2.454 0.170 3.261 7.293 2.530 29.412 2 BB_DG302DT303:DA314DC315_CC B 302 ? C 315 ? B 303 ? C 314 ? 1 A DT 3 1_555 B DA 6 1_555 A DA 4 1_555 B DT 5 1_555 0.317 -0.738 3.295 -0.554 11.656 35.529 -2.653 -0.566 2.913 18.496 0.880 37.337 3 BB_DT303DA304:DT313DA314_CC B 303 ? C 314 ? B 304 ? C 313 ? 1 A DA 4 1_555 B DT 5 1_555 A DT 5 1_555 B DA 4 1_555 -0.661 -0.672 3.234 4.224 1.919 28.579 -1.756 2.228 3.056 3.855 -8.486 28.945 4 BB_DA304DT305:DA312DT313_CC B 304 ? C 313 ? B 305 ? C 312 ? 1 A DT 5 1_555 B DA 4 1_555 A DA 6 1_555 B DT 3 1_555 -0.142 0.132 3.245 0.861 7.202 37.824 -0.690 0.322 3.212 10.986 -1.313 38.488 5 BB_DT305DA306:DT311DA312_CC B 305 ? C 312 ? B 306 ? C 311 ? 1 A DA 6 1_555 B DT 3 1_555 A DC 7 1_555 B DG 2 1_555 -0.005 -0.370 3.697 0.930 5.928 21.893 -3.333 0.388 3.473 15.243 -2.392 22.691 6 BB_DA306DC307:DG310DT311_CC B 306 ? C 311 ? B 307 ? C 310 ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 4 NAG 1 n 4 NAG 2 n # _atom_sites.entry_id 1DNK _atom_sites.fract_transf_matrix[1][1] 0.019569 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009225 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016103 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text 'OF THE CARBOHYDRATE MOIETY ATTACHED TO ND2 ASN 18, ONLY THE FIRST TWO RESIDUES WERE VISIBLE IN THE ELECTRON DENSITY MAP.' # loop_ _atom_type.symbol C N O P S # loop_