HEADER HYDROLASE/DNA 10-AUG-92 1DNK TITLE THE X-RAY STRUCTURE OF THE DNASE I-D(GGTATACC)2 COMPLEX AT 2.3 TITLE 2 ANGSTROMS RESOLUTION CAVEAT 1DNK NAG D 1 HAS WRONG CHIRALITY AT ATOM C2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*GP*TP*AP*TP*AP*C)-3'); COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*GP*GP*TP*AP*TP*AP*CP*C)-3'); COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PROTEIN (DEOXYRIBONUCLEASE I (DNASE I) (E.C.3.1.21.1)); COMPND 11 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 7 ORGANISM_COMMON: CATTLE; SOURCE 8 ORGANISM_TAXID: 9913; SOURCE 9 ORGAN: PANCREAS; SOURCE 10 SECRETION: MILK KEYWDS PROTEIN-DNA COMPLEX, DOUBLE HELIX, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.A.WESTON,A.LAHM,D.SUCK REVDAT 6 23-OCT-24 1DNK 1 HETSYN REVDAT 5 29-JUL-20 1DNK 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 13-JUL-11 1DNK 1 VERSN REVDAT 3 24-FEB-09 1DNK 1 VERSN REVDAT 2 01-APR-03 1DNK 1 JRNL REVDAT 1 31-JAN-94 1DNK 0 JRNL AUTH S.A.WESTON,A.LAHM,D.SUCK JRNL TITL X-RAY STRUCTURE OF THE DNASE I-D(GGTATACC)2 COMPLEX AT 2.3 A JRNL TITL 2 RESOLUTION. JRNL REF J.MOL.BIOL. V. 226 1237 1992 JRNL REFN ISSN 0022-2836 JRNL PMID 1518054 JRNL DOI 10.1016/0022-2836(92)91064-V REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.LAHM,D.SUCK REMARK 1 TITL DNASE I INDUCED DNA CONFORMATION: 2 ANGSTROMS STRUCTURE OF A REMARK 1 TITL 2 DNASE-OCTAMER COMPLEX REMARK 1 REF J.MOL.BIOL. V. 222 645 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.SUCK,A.LAHM,C.OEFNER REMARK 1 TITL STRUCTURE REFINED TO 2 ANGSTROMS OF A NICKED DNA REMARK 1 TITL 2 OCTANUCLEOTIDE COMPLEX WITH DNASE I REMARK 1 REF NATURE V. 332 465 1988 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.SUCK,C.OEFNER REMARK 1 TITL STRUCTURE OF DNASE I AT 2.0 ANGSTROMS RESOLUTION SUGGESTS A REMARK 1 TITL 2 MECHANISM FOR BINDING TO AND CUTTING DNA REMARK 1 REF NATURE V. 321 620 1986 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 4 REMARK 1 AUTH C.OEFNER,D.SUCK REMARK 1 TITL CRYSTALLOGRAPHIC REFINEMENT AND STRUCTURE OF DNASE I AT 2 REMARK 1 TITL 2 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 192 605 1986 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 5 REMARK 1 AUTH D.SUCK,C.OEFNER,W.KABSCH REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF BOVINE PANCREATIC DNASE I AT REMARK 1 TITL 2 2.5 ANGSTROMS RESOLUTION REMARK 1 REF EMBO J. V. 3 2423 1984 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 6 REMARK 1 AUTH D.SUCK REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC DATA OF REMARK 1 TITL 2 BOVINE PANCREATIC DEOXYRIBONUCLEASE I REMARK 1 REF J.MOL.BIOL. V. 162 511 1982 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 7 REMARK 1 AUTH T.-H.LIAO,J.SALNIKOW,S.MOORE,W.H.STEIN REMARK 1 TITL BOVINE PANCREATIC DEOXYRIBONUCLEASE A. ISOLATION OF CYANOGEN REMARK 1 TITL 2 BROMIDE PEPTIDES, COMPLETE COVALENT STRUCTURE OF THE REMARK 1 TITL 3 POLYPEPTIDE CHAIN REMARK 1 REF J.BIOL.CHEM. V. 248 1489 1973 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 11998 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1982 REMARK 3 NUCLEIC ACID ATOMS : 303 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 77 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : NULL ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DNK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000172860. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12681 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 18.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.00K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 25.55000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.55000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 98 REMARK 465 ASP A 99 REMARK 465 GLY A 100 REMARK 465 CYS A 101 REMARK 465 GLU A 102 REMARK 465 SER A 103 REMARK 465 CYS A 104 REMARK 465 GLY A 105 REMARK 465 ASN A 106 REMARK 465 ASP A 107 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 18 O5 NAG D 1 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CA GLY A 228 O7 NAG D 2 4455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B 301 C3' DG B 301 C2' 0.087 REMARK 500 DT B 305 P DT B 305 O5' 0.065 REMARK 500 DC B 307 C2' DC B 307 C1' 0.082 REMARK 500 DG C 309 C3' DG C 309 C2' 0.082 REMARK 500 DG C 309 C2' DG C 309 C1' 0.067 REMARK 500 DG C 310 P DG C 310 O5' 0.090 REMARK 500 DG C 310 C2' DG C 310 C1' 0.075 REMARK 500 DT C 311 P DT C 311 O5' 0.066 REMARK 500 DA C 312 C2' DA C 312 C1' 0.061 REMARK 500 DA C 314 C5' DA C 314 C4' 0.043 REMARK 500 DA C 314 C6 DA C 314 N1 -0.049 REMARK 500 DC C 315 O3' DC C 315 C3' -0.047 REMARK 500 DC C 316 P DC C 316 O5' 0.062 REMARK 500 THR A 260 C THR A 260 OXT 3.173 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 301 O4' - C4' - C3' ANGL. DEV. = -5.6 DEGREES REMARK 500 DG B 301 C3' - C2' - C1' ANGL. DEV. = -10.7 DEGREES REMARK 500 DG B 301 O4' - C1' - C2' ANGL. DEV. = 3.7 DEGREES REMARK 500 DG B 302 C3' - C2' - C1' ANGL. DEV. = -8.0 DEGREES REMARK 500 DG B 302 O4' - C1' - C2' ANGL. DEV. = 4.7 DEGREES REMARK 500 DT B 303 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 DT B 303 O4' - C1' - C2' ANGL. DEV. = 5.0 DEGREES REMARK 500 DT B 303 C6 - C5 - C7 ANGL. DEV. = -5.1 DEGREES REMARK 500 DA B 304 O5' - C5' - C4' ANGL. DEV. = -5.5 DEGREES REMARK 500 DA B 304 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DA B 304 C3' - C2' - C1' ANGL. DEV. = -6.8 DEGREES REMARK 500 DA B 304 O4' - C1' - C2' ANGL. DEV. = 5.7 DEGREES REMARK 500 DT B 305 O5' - C5' - C4' ANGL. DEV. = -7.0 DEGREES REMARK 500 DA B 306 O5' - C5' - C4' ANGL. DEV. = -7.5 DEGREES REMARK 500 DA B 306 C4' - C3' - C2' ANGL. DEV. = 6.1 DEGREES REMARK 500 DA B 306 O4' - C1' - N9 ANGL. DEV. = -6.0 DEGREES REMARK 500 DA B 306 C2 - N3 - C4 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC B 307 C1' - O4' - C4' ANGL. DEV. = -7.4 DEGREES REMARK 500 DC B 307 C3' - C2' - C1' ANGL. DEV. = -6.9 DEGREES REMARK 500 DC B 307 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 DC B 307 N1 - C2 - N3 ANGL. DEV. = 5.2 DEGREES REMARK 500 DC B 307 C2 - N3 - C4 ANGL. DEV. = -5.2 DEGREES REMARK 500 DC B 307 C4 - C5 - C6 ANGL. DEV. = 5.6 DEGREES REMARK 500 DC B 307 C5 - C6 - N1 ANGL. DEV. = -5.3 DEGREES REMARK 500 DG C 309 C3' - C2' - C1' ANGL. DEV. = -11.2 DEGREES REMARK 500 DG C 309 O4' - C1' - C2' ANGL. DEV. = 3.3 DEGREES REMARK 500 DG C 309 C6 - C5 - N7 ANGL. DEV. = -3.7 DEGREES REMARK 500 DG C 309 N3 - C2 - N2 ANGL. DEV. = 4.4 DEGREES REMARK 500 DG C 309 C3' - O3' - P ANGL. DEV. = 11.7 DEGREES REMARK 500 DG C 310 C3' - C2' - C1' ANGL. DEV. = -6.6 DEGREES REMARK 500 DG C 310 C6 - N1 - C2 ANGL. DEV. = -5.6 DEGREES REMARK 500 DG C 310 N3 - C4 - C5 ANGL. DEV. = -5.0 DEGREES REMARK 500 DT C 311 C4' - C3' - C2' ANGL. DEV. = 6.0 DEGREES REMARK 500 DT C 311 C3' - C2' - C1' ANGL. DEV. = -9.0 DEGREES REMARK 500 DT C 311 O4' - C1' - N1 ANGL. DEV. = -4.8 DEGREES REMARK 500 DT C 311 C6 - N1 - C2 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT C 311 C2 - N3 - C4 ANGL. DEV. = -4.8 DEGREES REMARK 500 DT C 311 C5 - C6 - N1 ANGL. DEV. = -6.3 DEGREES REMARK 500 DT C 311 C6 - C5 - C7 ANGL. DEV. = -5.0 DEGREES REMARK 500 DA C 312 C1' - O4' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 DA C 312 C3' - C2' - C1' ANGL. DEV. = -5.9 DEGREES REMARK 500 DA C 312 C4 - C5 - C6 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA C 312 C5 - C6 - N1 ANGL. DEV. = -4.2 DEGREES REMARK 500 DA C 312 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DT C 313 O4' - C1' - C2' ANGL. DEV. = 4.3 DEGREES REMARK 500 DT C 313 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT C 313 C4 - C5 - C6 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT C 313 N3 - C2 - O2 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT C 313 C6 - C5 - C7 ANGL. DEV. = -4.1 DEGREES REMARK 500 DA C 314 O4' - C4' - C3' ANGL. DEV. = 4.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 87 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 10 56.71 37.74 REMARK 500 GLU A 39 43.99 71.47 REMARK 500 ARG A 41 78.70 -107.58 REMARK 500 LEU A 45 23.99 49.50 REMARK 500 ASP A 59 135.28 -170.33 REMARK 500 ASN A 74 -142.91 -122.25 REMARK 500 ASP A 93 162.57 175.59 REMARK 500 ALA A 171 45.55 -79.11 REMARK 500 CYS A 173 -125.02 44.91 REMARK 500 ASN A 208 73.37 -112.50 REMARK 500 SER A 250 150.53 177.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 OF THE CARBOHYDRATE MOIETY ATTACHED TO ND2 ASN 18, ONLY THE REMARK 600 FIRST TWO RESIDUES WERE VISIBLE IN THE ELECTRON DENSITY REMARK 600 MAP. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ACT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL DBREF 1DNK A 1 260 UNP P00639 DRN1_BOVIN 23 282 DBREF 1DNK B 301 307 PDB 1DNK 1DNK 301 307 DBREF 1DNK C 309 316 PDB 1DNK 1DNK 309 316 SEQRES 1 B 7 DG DG DT DA DT DA DC SEQRES 1 C 8 DG DG DT DA DT DA DC DC SEQRES 1 A 260 LEU LYS ILE ALA ALA PHE ASN ILE ARG THR PHE GLY GLU SEQRES 2 A 260 THR LYS MET SER ASN ALA THR LEU ALA SER TYR ILE VAL SEQRES 3 A 260 ARG ILE VAL ARG ARG TYR ASP ILE VAL LEU ILE GLN GLU SEQRES 4 A 260 VAL ARG ASP SER HIS LEU VAL ALA VAL GLY LYS LEU LEU SEQRES 5 A 260 ASP TYR LEU ASN GLN ASP ASP PRO ASN THR TYR HIS TYR SEQRES 6 A 260 VAL VAL SER GLU PRO LEU GLY ARG ASN SER TYR LYS GLU SEQRES 7 A 260 ARG TYR LEU PHE LEU PHE ARG PRO ASN LYS VAL SER VAL SEQRES 8 A 260 LEU ASP THR TYR GLN TYR ASP ASP GLY CYS GLU SER CYS SEQRES 9 A 260 GLY ASN ASP SER PHE SER ARG GLU PRO ALA VAL VAL LYS SEQRES 10 A 260 PHE SER SER HIS SER THR LYS VAL LYS GLU PHE ALA ILE SEQRES 11 A 260 VAL ALA LEU HIS SER ALA PRO SER ASP ALA VAL ALA GLU SEQRES 12 A 260 ILE ASN SER LEU TYR ASP VAL TYR LEU ASP VAL GLN GLN SEQRES 13 A 260 LYS TRP HIS LEU ASN ASP VAL MET LEU MET GLY ASP PHE SEQRES 14 A 260 ASN ALA ASP CYS SER TYR VAL THR SER SER GLN TRP SER SEQRES 15 A 260 SER ILE ARG LEU ARG THR SER SER THR PHE GLN TRP LEU SEQRES 16 A 260 ILE PRO ASP SER ALA ASP THR THR ALA THR SER THR ASN SEQRES 17 A 260 CYS ALA TYR ASP ARG ILE VAL VAL ALA GLY SER LEU LEU SEQRES 18 A 260 GLN SER SER VAL VAL PRO GLY SER ALA ALA PRO PHE ASP SEQRES 19 A 260 PHE GLN ALA ALA TYR GLY LEU SER ASN GLU MET ALA LEU SEQRES 20 A 260 ALA ILE SER ASP HIS TYR PRO VAL GLU VAL THR LEU THR MODRES 1DNK ASN A 18 ASN GLYCOSYLATION SITE HET NAG D 1 14 HET NAG D 2 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 5 HOH *77(H2 O) HELIX 1 GLU A 13 MET A 16 1 4 HELIX 2 ALA A 19 ARG A 30 1 12 HELIX 3 VAL A 46 LEU A 55 1 10 HELIX 4 ASP A 139 LEU A 147 1 9 HELIX 5 TYR A 148 TRP A 158 1CONTIGUOUS WITH HELIX H4A 11 HELIX 6 ARG A 185 THR A 188 1 4 HELIX 7 SER A 219 SER A 224 1 6 HELIX 8 PHE A 235 TYR A 239 1 5 HELIX 9 ASN A 243 ILE A 249 1 7 SHEET 1 S1 6 ALA A 231 PRO A 232 0 SHEET 2 S1 6 VAL A 255 LEU A 259 -1 O GLU A 256 N ALA A 231 SHEET 3 S1 6 LYS A 2 PHE A 11 -1 O ALA A 5 N VAL A 255 SHEET 4 S1 6 ILE A 34 VAL A 40 1 O LEU A 36 N PHE A 6 SHEET 5 S1 6 ARG A 79 PHE A 84 -1 O LEU A 81 N ILE A 37 SHEET 6 S1 6 HIS A 64 VAL A 67 -1 O VAL A 66 N PHE A 82 SHEET 1 S2 6 VAL A 89 GLN A 96 0 SHEET 2 S2 6 ALA A 114 SER A 120 -1 O VAL A 115 N TYR A 95 SHEET 3 S2 6 LYS A 126 ALA A 132 -1 O ILE A 130 N VAL A 116 SHEET 4 S2 6 VAL A 163 ASP A 168 1 O MET A 166 N VAL A 131 SHEET 5 S2 6 ASP A 212 ALA A 217 -1 O VAL A 215 N LEU A 165 SHEET 6 S2 6 GLN A 193 TRP A 194 -1 O GLN A 193 N VAL A 216 SSBOND 1 CYS A 173 CYS A 209 1555 1555 2.08 LINK ND2 ASN A 18 C1 NAG D 1 1555 1555 1.52 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.52 SITE 1 ACT 5 GLU A 39 GLU A 78 HIS A 134 ASP A 212 SITE 2 ACT 5 HIS A 252 CRYST1 51.100 108.400 62.100 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019569 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016103 0.00000