data_1DOJ
#
_entry.id 1DOJ
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.397
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1DOJ pdb_00001doj 10.2210/pdb1doj/pdb
RCSB RCSB010249 ? ?
WWPDB D_1000010249 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2000-11-03
2 'Structure model' 1 1 2008-04-27
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2012-12-12
5 'Structure model' 1 4 2020-07-29
6 'Structure model' 1 5 2024-03-13
7 'Structure model' 1 6 2024-10-30
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Atomic model'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Derived calculations'
5 3 'Structure model' 'Non-polymer description'
6 3 'Structure model' 'Structure summary'
7 3 'Structure model' 'Version format compliance'
8 4 'Structure model' Other
9 5 'Structure model' Advisory
10 5 'Structure model' 'Data collection'
11 5 'Structure model' 'Derived calculations'
12 5 'Structure model' 'Structure summary'
13 6 'Structure model' 'Data collection'
14 6 'Structure model' 'Database references'
15 6 'Structure model' 'Source and taxonomy'
16 6 'Structure model' 'Structure summary'
17 7 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 5 'Structure model' chem_comp
2 5 'Structure model' database_PDB_caveat
3 5 'Structure model' entity
4 5 'Structure model' pdbx_chem_comp_identifier
5 5 'Structure model' pdbx_entity_nonpoly
6 5 'Structure model' pdbx_struct_conn_angle
7 5 'Structure model' struct_conn
8 5 'Structure model' struct_site
9 5 'Structure model' struct_site_gen
10 6 'Structure model' chem_comp
11 6 'Structure model' chem_comp_atom
12 6 'Structure model' chem_comp_bond
13 6 'Structure model' database_2
14 6 'Structure model' entity
15 6 'Structure model' pdbx_entity_src_syn
16 7 'Structure model' pdbx_entry_details
17 7 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 5 'Structure model' '_chem_comp.name'
2 5 'Structure model' '_chem_comp.type'
3 5 'Structure model' '_entity.pdbx_description'
4 5 'Structure model' '_pdbx_entity_nonpoly.name'
5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
7 5 'Structure model' '_pdbx_struct_conn_angle.value'
8 5 'Structure model' '_struct_conn.conn_type_id'
9 5 'Structure model' '_struct_conn.id'
10 5 'Structure model' '_struct_conn.pdbx_dist_value'
11 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
12 5 'Structure model' '_struct_conn.pdbx_ptnr1_PDB_ins_code'
13 5 'Structure model' '_struct_conn.pdbx_role'
14 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
15 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
16 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
17 5 'Structure model' '_struct_conn.ptnr1_label_asym_id'
18 5 'Structure model' '_struct_conn.ptnr1_label_atom_id'
19 5 'Structure model' '_struct_conn.ptnr1_label_comp_id'
20 5 'Structure model' '_struct_conn.ptnr1_label_seq_id'
21 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
22 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
23 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
24 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'
25 5 'Structure model' '_struct_conn.ptnr2_label_atom_id'
26 5 'Structure model' '_struct_conn.ptnr2_label_comp_id'
27 5 'Structure model' '_struct_conn.ptnr2_label_seq_id'
28 6 'Structure model' '_chem_comp.pdbx_synonyms'
29 6 'Structure model' '_database_2.pdbx_DOI'
30 6 'Structure model' '_database_2.pdbx_database_accession'
31 6 'Structure model' '_entity.details'
#
loop_
_database_PDB_caveat.id
_database_PDB_caveat.text
1 'NAG A 250 HAS WRONG CHIRALITY AT ATOM C2'
2 'NAG A 250 HAS WRONG CHIRALITY AT ATOM C3'
3 'NAG A 250 HAS WRONG CHIRALITY AT ATOM C4'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1DOJ
_pdbx_database_status.recvd_initial_deposition_date 1999-12-21
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.SG_entry .
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 1abj
_pdbx_database_related.details 'contains the same protein complexed with D-PHE-PRO-ARG chloromethylketone (PPACK)'
_pdbx_database_related.content_type unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Recacha, R.' 1
'Costanzo, M.J.' 2
'Maryanoff, B.E.' 3
'Carson, M.' 4
'DeLucas, L.' 5
'Chattopadhyay, D.' 6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'Structure of human alpha-thrombin complexed with RWJ-51438 at 1.7 A: unusual perturbation of the 60A-60I insertion loop.'
'Acta Crystallogr.,Sect.D' 56 1395 1400 2000 ABCRE6 DK 0907-4449 0766 ? 11053836 10.1107/S0907444900010763
1
;Structure of the Hirulog 3-Thrombin Complex and Nature of the S' Subsites of Substrates and Inhibitors
;
Biochemistry 31 11689 11697 1992 BICHAW US 0006-2960 0033 ? ? ?
2
;Crystal Structure of Thrombin with Thiazole-Containing Inhibitors: Probes of the S1' Binding Site
;
Biophys.J. 71 2830 2839 1996 BIOJAU US 0006-3495 0030 ? ? ?
3
;The Refined 1.9-A X-ray Crystal Structure of D-Pro-Phe-Arg Chloromethylketone-Inhibited Human Alpha-Thrombin: Structure Analysis, Overall Structure, Electrostatic Properties, Detailed Active-Site Geometry, and Structure-Function Relationships
;
'Protein Sci.' 1 426 471 1992 PRCIEI US 0961-8368 0795 ? ? ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Recacha, R.' 1 ?
primary 'Costanzo, M.J.' 2 ?
primary 'Maryanoff, B.E.' 3 ?
primary 'Carson, M.' 4 ?
primary 'DeLucas, L.' 5 ?
primary 'Chattopadhyay, D.' 6 ?
1 'Qiu, X.' 7 ?
1 'Padmanabhan, K.P.' 8 ?
1 'Carperos, V.E.' 9 ?
1 'Tulinsky, A.' 10 ?
1 'Kline, T.' 11 ?
1 'Maraganore, J.M.' 12 ?
1 'Fenton II, J.W.' 13 ?
2 'Matthews, J.H.' 14 ?
2 'Krishnan, R.' 15 ?
2 'Costanzo, M.J.' 16 ?
2 'Maryanoff, B.E.' 17 ?
2 'Tulinsky, A.' 18 ?
3 'Bode, W.' 19 ?
3 'Turk, D.' 20 ?
3 'Karshikov, A.' 21 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer nat ALPHA-THROMBIN 33858.730 1 3.4.21.5 ? ? ?
2 polymer syn HIRUGEN 1491.528 1 ? ? 'FRAGMENT OF HIRUDIN' ?
3 non-polymer syn
'N-methyl-D-phenylalanyl-N-{(1S)-4-carbamimidamido-1-[(6-carboxy-1,3-benzothiazol-2-yl)carbonyl]butyl}-L-prolinamide' 593.697 1
? ? ?
'RWJ-51438 IS JOINED COVALENTLY TO SER195 OF HUMAN ALPHA-THROMBIN RWJ-51438 was chemically synthesized'
4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ?
5 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ?
6 water nat water 18.015 349 ? ? ? ?
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 'polypeptide(L)' no no
;TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHC
LLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRE
TAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGD
SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE
;
;TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHC
LLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRE
TAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGD
SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE
;
A ?
2 'polypeptide(L)' no yes 'DFEEIPEE(TYS)LQ' DFEEIPEEYLQ B ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 'N-methyl-D-phenylalanyl-N-{(1S)-4-carbamimidamido-1-[(6-carboxy-1,3-benzothiazol-2-yl)carbonyl]butyl}-L-prolinamide' 1Z0
4 2-acetamido-2-deoxy-beta-D-glucopyranose NAG
5 'SODIUM ION' NA
6 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 THR n
1 2 PHE n
1 3 GLY n
1 4 SER n
1 5 GLY n
1 6 GLU n
1 7 ALA n
1 8 ASP n
1 9 CYS n
1 10 GLY n
1 11 LEU n
1 12 ARG n
1 13 PRO n
1 14 LEU n
1 15 PHE n
1 16 GLU n
1 17 LYS n
1 18 LYS n
1 19 SER n
1 20 LEU n
1 21 GLU n
1 22 ASP n
1 23 LYS n
1 24 THR n
1 25 GLU n
1 26 ARG n
1 27 GLU n
1 28 LEU n
1 29 LEU n
1 30 GLU n
1 31 SER n
1 32 TYR n
1 33 ILE n
1 34 ASP n
1 35 GLY n
1 36 ARG n
1 37 ILE n
1 38 VAL n
1 39 GLU n
1 40 GLY n
1 41 SER n
1 42 ASP n
1 43 ALA n
1 44 GLU n
1 45 ILE n
1 46 GLY n
1 47 MET n
1 48 SER n
1 49 PRO n
1 50 TRP n
1 51 GLN n
1 52 VAL n
1 53 MET n
1 54 LEU n
1 55 PHE n
1 56 ARG n
1 57 LYS n
1 58 SER n
1 59 PRO n
1 60 GLN n
1 61 GLU n
1 62 LEU n
1 63 LEU n
1 64 CYS n
1 65 GLY n
1 66 ALA n
1 67 SER n
1 68 LEU n
1 69 ILE n
1 70 SER n
1 71 ASP n
1 72 ARG n
1 73 TRP n
1 74 VAL n
1 75 LEU n
1 76 THR n
1 77 ALA n
1 78 ALA n
1 79 HIS n
1 80 CYS n
1 81 LEU n
1 82 LEU n
1 83 TYR n
1 84 PRO n
1 85 PRO n
1 86 TRP n
1 87 ASP n
1 88 LYS n
1 89 ASN n
1 90 PHE n
1 91 THR n
1 92 GLU n
1 93 ASN n
1 94 ASP n
1 95 LEU n
1 96 LEU n
1 97 VAL n
1 98 ARG n
1 99 ILE n
1 100 GLY n
1 101 LYS n
1 102 HIS n
1 103 SER n
1 104 ARG n
1 105 THR n
1 106 ARG n
1 107 TYR n
1 108 GLU n
1 109 ARG n
1 110 ASN n
1 111 ILE n
1 112 GLU n
1 113 LYS n
1 114 ILE n
1 115 SER n
1 116 MET n
1 117 LEU n
1 118 GLU n
1 119 LYS n
1 120 ILE n
1 121 TYR n
1 122 ILE n
1 123 HIS n
1 124 PRO n
1 125 ARG n
1 126 TYR n
1 127 ASN n
1 128 TRP n
1 129 ARG n
1 130 GLU n
1 131 ASN n
1 132 LEU n
1 133 ASP n
1 134 ARG n
1 135 ASP n
1 136 ILE n
1 137 ALA n
1 138 LEU n
1 139 MET n
1 140 LYS n
1 141 LEU n
1 142 LYS n
1 143 LYS n
1 144 PRO n
1 145 VAL n
1 146 ALA n
1 147 PHE n
1 148 SER n
1 149 ASP n
1 150 TYR n
1 151 ILE n
1 152 HIS n
1 153 PRO n
1 154 VAL n
1 155 CYS n
1 156 LEU n
1 157 PRO n
1 158 ASP n
1 159 ARG n
1 160 GLU n
1 161 THR n
1 162 ALA n
1 163 ALA n
1 164 SER n
1 165 LEU n
1 166 LEU n
1 167 GLN n
1 168 ALA n
1 169 GLY n
1 170 TYR n
1 171 LYS n
1 172 GLY n
1 173 ARG n
1 174 VAL n
1 175 THR n
1 176 GLY n
1 177 TRP n
1 178 GLY n
1 179 ASN n
1 180 LEU n
1 181 LYS n
1 182 GLU n
1 183 THR n
1 184 TRP n
1 185 THR n
1 186 ALA n
1 187 ASN n
1 188 VAL n
1 189 GLY n
1 190 LYS n
1 191 GLY n
1 192 GLN n
1 193 PRO n
1 194 SER n
1 195 VAL n
1 196 LEU n
1 197 GLN n
1 198 VAL n
1 199 VAL n
1 200 ASN n
1 201 LEU n
1 202 PRO n
1 203 ILE n
1 204 VAL n
1 205 GLU n
1 206 ARG n
1 207 PRO n
1 208 VAL n
1 209 CYS n
1 210 LYS n
1 211 ASP n
1 212 SER n
1 213 THR n
1 214 ARG n
1 215 ILE n
1 216 ARG n
1 217 ILE n
1 218 THR n
1 219 ASP n
1 220 ASN n
1 221 MET n
1 222 PHE n
1 223 CYS n
1 224 ALA n
1 225 GLY n
1 226 TYR n
1 227 LYS n
1 228 PRO n
1 229 ASP n
1 230 GLU n
1 231 GLY n
1 232 LYS n
1 233 ARG n
1 234 GLY n
1 235 ASP n
1 236 ALA n
1 237 CYS n
1 238 GLU n
1 239 GLY n
1 240 ASP n
1 241 SER n
1 242 GLY n
1 243 GLY n
1 244 PRO n
1 245 PHE n
1 246 VAL n
1 247 MET n
1 248 LYS n
1 249 SER n
1 250 PRO n
1 251 PHE n
1 252 ASN n
1 253 ASN n
1 254 ARG n
1 255 TRP n
1 256 TYR n
1 257 GLN n
1 258 MET n
1 259 GLY n
1 260 ILE n
1 261 VAL n
1 262 SER n
1 263 TRP n
1 264 GLY n
1 265 GLU n
1 266 GLY n
1 267 CYS n
1 268 ASP n
1 269 ARG n
1 270 ASP n
1 271 GLY n
1 272 LYS n
1 273 TYR n
1 274 GLY n
1 275 PHE n
1 276 TYR n
1 277 THR n
1 278 HIS n
1 279 VAL n
1 280 PHE n
1 281 ARG n
1 282 LEU n
1 283 LYS n
1 284 LYS n
1 285 TRP n
1 286 ILE n
1 287 GLN n
1 288 LYS n
1 289 VAL n
1 290 ILE n
1 291 ASP n
1 292 GLN n
1 293 PHE n
1 294 GLY n
1 295 GLU n
2 1 ASP n
2 2 PHE n
2 3 GLU n
2 4 GLU n
2 5 ILE n
2 6 PRO n
2 7 GLU n
2 8 GLU n
2 9 TYS n
2 10 LEU n
2 11 GLN n
#
_entity_src_nat.entity_id 1
_entity_src_nat.pdbx_src_id 1
_entity_src_nat.pdbx_alt_source_flag sample
_entity_src_nat.pdbx_beg_seq_num ?
_entity_src_nat.pdbx_end_seq_num ?
_entity_src_nat.common_name human
_entity_src_nat.pdbx_organism_scientific 'Homo sapiens'
_entity_src_nat.pdbx_ncbi_taxonomy_id 9606
_entity_src_nat.genus Homo
_entity_src_nat.species ?
_entity_src_nat.strain ?
_entity_src_nat.tissue ?
_entity_src_nat.tissue_fraction ?
_entity_src_nat.pdbx_secretion ?
_entity_src_nat.pdbx_fragment ?
_entity_src_nat.pdbx_variant ?
_entity_src_nat.pdbx_cell_line ?
_entity_src_nat.pdbx_atcc ?
_entity_src_nat.pdbx_cellular_location PLASMA
_entity_src_nat.pdbx_organ ?
_entity_src_nat.pdbx_organelle ?
_entity_src_nat.pdbx_cell ?
_entity_src_nat.pdbx_plasmid_name ?
_entity_src_nat.pdbx_plasmid_details ?
_entity_src_nat.details ?
#
_pdbx_entity_src_syn.entity_id 2
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'Hirugen, comes from hirudin'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
1Z0 peptide-like .
'N-methyl-D-phenylalanyl-N-{(1S)-4-carbamimidamido-1-[(6-carboxy-1,3-benzothiazol-2-yl)carbonyl]butyl}-L-prolinamide' RWJ-51438
'C29 H35 N7 O5 S' 593.697
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990
NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose
;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
;
'C8 H15 N O6' 221.208
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
TYS 'L-peptide linking' n O-SULFO-L-TYROSINE ? 'C9 H11 N O6 S' 261.252
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb
NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine
NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc
NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 THR 1 1 1 THR ALA A H n
A 1 2 PHE 2 1 1 PHE ALA A G n
A 1 3 GLY 3 1 1 GLY GLY A F n
A 1 4 SER 4 1 1 SER SER A E n
A 1 5 GLY 5 1 1 GLY GLY A D n
A 1 6 GLU 6 1 1 GLU GLU A C n
A 1 7 ALA 7 1 1 ALA ALA A B n
A 1 8 ASP 8 1 1 ASP ASP A A n
A 1 9 CYS 9 1 1 CYS CYS A . n
A 1 10 GLY 10 2 2 GLY GLY A . n
A 1 11 LEU 11 3 3 LEU LEU A . n
A 1 12 ARG 12 4 4 ARG ARG A . n
A 1 13 PRO 13 5 5 PRO PRO A . n
A 1 14 LEU 14 6 6 LEU LEU A . n
A 1 15 PHE 15 7 7 PHE PHE A . n
A 1 16 GLU 16 8 8 GLU GLU A . n
A 1 17 LYS 17 9 9 LYS LYS A . n
A 1 18 LYS 18 10 10 LYS LYS A . n
A 1 19 SER 19 11 11 SER SER A . n
A 1 20 LEU 20 12 12 LEU LEU A . n
A 1 21 GLU 21 13 13 GLU GLU A . n
A 1 22 ASP 22 14 14 ASP ASP A . n
A 1 23 LYS 23 14 14 LYS LYS A A n
A 1 24 THR 24 14 14 THR THR A B n
A 1 25 GLU 25 14 14 GLU GLU A C n
A 1 26 ARG 26 14 14 ARG ARG A D n
A 1 27 GLU 27 14 14 GLU GLU A E n
A 1 28 LEU 28 14 14 LEU LEU A F n
A 1 29 LEU 29 14 14 LEU LEU A G n
A 1 30 GLU 30 14 14 GLU GLU A H n
A 1 31 SER 31 14 14 SER SER A I n
A 1 32 TYR 32 14 14 TYR TYR A J n
A 1 33 ILE 33 14 14 ILE ILE A K n
A 1 34 ASP 34 14 14 ASP GLY A M n
A 1 35 GLY 35 14 ? ? ? A L n
A 1 36 ARG 36 15 ? ? ? A . n
A 1 37 ILE 37 16 16 ILE ILE A . n
A 1 38 VAL 38 17 17 VAL VAL A . n
A 1 39 GLU 39 18 18 GLU GLU A . n
A 1 40 GLY 40 19 19 GLY GLY A . n
A 1 41 SER 41 20 20 SER SER A . n
A 1 42 ASP 42 21 21 ASP ASP A . n
A 1 43 ALA 43 22 22 ALA ALA A . n
A 1 44 GLU 44 23 23 GLU GLU A . n
A 1 45 ILE 45 24 24 ILE ILE A . n
A 1 46 GLY 46 25 25 GLY GLY A . n
A 1 47 MET 47 26 26 MET MET A . n
A 1 48 SER 48 27 27 SER SER A . n
A 1 49 PRO 49 28 28 PRO PRO A . n
A 1 50 TRP 50 29 29 TRP TRP A . n
A 1 51 GLN 51 30 30 GLN GLN A . n
A 1 52 VAL 52 31 31 VAL VAL A . n
A 1 53 MET 53 32 32 MET MET A . n
A 1 54 LEU 54 33 33 LEU LEU A . n
A 1 55 PHE 55 34 34 PHE PHE A . n
A 1 56 ARG 56 35 35 ARG ARG A . n
A 1 57 LYS 57 36 36 LYS LYS A . n
A 1 58 SER 58 36 36 SER SER A A n
A 1 59 PRO 59 37 37 PRO PRO A . n
A 1 60 GLN 60 38 38 GLN GLN A . n
A 1 61 GLU 61 39 39 GLU GLU A . n
A 1 62 LEU 62 40 40 LEU LEU A . n
A 1 63 LEU 63 41 41 LEU LEU A . n
A 1 64 CYS 64 42 42 CYS CYS A . n
A 1 65 GLY 65 43 43 GLY GLY A . n
A 1 66 ALA 66 44 44 ALA ALA A . n
A 1 67 SER 67 45 45 SER SER A . n
A 1 68 LEU 68 46 46 LEU LEU A . n
A 1 69 ILE 69 47 47 ILE ILE A . n
A 1 70 SER 70 48 48 SER SER A . n
A 1 71 ASP 71 49 49 ASP ASP A . n
A 1 72 ARG 72 50 50 ARG ARG A . n
A 1 73 TRP 73 51 51 TRP TRP A . n
A 1 74 VAL 74 52 52 VAL VAL A . n
A 1 75 LEU 75 53 53 LEU LEU A . n
A 1 76 THR 76 54 54 THR THR A . n
A 1 77 ALA 77 55 55 ALA ALA A . n
A 1 78 ALA 78 56 56 ALA ALA A . n
A 1 79 HIS 79 57 57 HIS HIS A . n
A 1 80 CYS 80 58 58 CYS CYS A . n
A 1 81 LEU 81 59 59 LEU LEU A . n
A 1 82 LEU 82 60 60 LEU LEU A . n
A 1 83 TYR 83 60 60 TYR TYR A A n
A 1 84 PRO 84 60 60 PRO PRO A B n
A 1 85 PRO 85 60 60 PRO PRO A C n
A 1 86 TRP 86 60 60 TRP TRP A D n
A 1 87 ASP 87 60 60 ASP ASP A E n
A 1 88 LYS 88 60 60 LYS LYS A F n
A 1 89 ASN 89 60 60 ASN ASN A G n
A 1 90 PHE 90 60 60 PHE PHE A H n
A 1 91 THR 91 60 60 THR THR A I n
A 1 92 GLU 92 61 61 GLU GLU A . n
A 1 93 ASN 93 62 62 ASN ASN A . n
A 1 94 ASP 94 63 63 ASP ASP A . n
A 1 95 LEU 95 64 64 LEU LEU A . n
A 1 96 LEU 96 65 65 LEU LEU A . n
A 1 97 VAL 97 66 66 VAL VAL A . n
A 1 98 ARG 98 67 67 ARG ARG A . n
A 1 99 ILE 99 68 68 ILE ILE A . n
A 1 100 GLY 100 69 69 GLY GLY A . n
A 1 101 LYS 101 70 70 LYS LYS A . n
A 1 102 HIS 102 71 71 HIS HIS A . n
A 1 103 SER 103 72 72 SER SER A . n
A 1 104 ARG 104 73 73 ARG ARG A . n
A 1 105 THR 105 74 74 THR THR A . n
A 1 106 ARG 106 75 75 ARG ARG A . n
A 1 107 TYR 107 76 76 TYR TYR A . n
A 1 108 GLU 108 77 77 GLU GLU A . n
A 1 109 ARG 109 77 77 ARG ARG A A n
A 1 110 ASN 110 78 78 ASN ASN A . n
A 1 111 ILE 111 79 79 ILE ILE A . n
A 1 112 GLU 112 80 80 GLU GLU A . n
A 1 113 LYS 113 81 81 LYS LYS A . n
A 1 114 ILE 114 82 82 ILE ILE A . n
A 1 115 SER 115 83 83 SER SER A . n
A 1 116 MET 116 84 84 MET MET A . n
A 1 117 LEU 117 85 85 LEU LEU A . n
A 1 118 GLU 118 86 86 GLU GLU A . n
A 1 119 LYS 119 87 87 LYS LYS A . n
A 1 120 ILE 120 88 88 ILE ILE A . n
A 1 121 TYR 121 89 89 TYR TYR A . n
A 1 122 ILE 122 90 90 ILE ILE A . n
A 1 123 HIS 123 91 91 HIS HIS A . n
A 1 124 PRO 124 92 92 PRO PRO A . n
A 1 125 ARG 125 93 93 ARG ARG A . n
A 1 126 TYR 126 94 94 TYR TYR A . n
A 1 127 ASN 127 95 95 ASN ASN A . n
A 1 128 TRP 128 96 96 TRP TRP A . n
A 1 129 ARG 129 97 97 ARG ARG A . n
A 1 130 GLU 130 97 97 GLU GLU A A n
A 1 131 ASN 131 98 98 ASN ASN A . n
A 1 132 LEU 132 99 99 LEU LEU A . n
A 1 133 ASP 133 100 100 ASP ASP A . n
A 1 134 ARG 134 101 101 ARG ARG A . n
A 1 135 ASP 135 102 102 ASP ASP A . n
A 1 136 ILE 136 103 103 ILE ILE A . n
A 1 137 ALA 137 104 104 ALA ALA A . n
A 1 138 LEU 138 105 105 LEU LEU A . n
A 1 139 MET 139 106 106 MET MET A . n
A 1 140 LYS 140 107 107 LYS LYS A . n
A 1 141 LEU 141 108 108 LEU LEU A . n
A 1 142 LYS 142 109 109 LYS LYS A . n
A 1 143 LYS 143 110 110 LYS LYS A . n
A 1 144 PRO 144 111 111 PRO PRO A . n
A 1 145 VAL 145 112 112 VAL VAL A . n
A 1 146 ALA 146 113 113 ALA ALA A . n
A 1 147 PHE 147 114 114 PHE PHE A . n
A 1 148 SER 148 115 115 SER SER A . n
A 1 149 ASP 149 116 116 ASP ASP A . n
A 1 150 TYR 150 117 117 TYR TYR A . n
A 1 151 ILE 151 118 118 ILE ILE A . n
A 1 152 HIS 152 119 119 HIS HIS A . n
A 1 153 PRO 153 120 120 PRO PRO A . n
A 1 154 VAL 154 121 121 VAL VAL A . n
A 1 155 CYS 155 122 122 CYS CYS A . n
A 1 156 LEU 156 123 123 LEU LEU A . n
A 1 157 PRO 157 124 124 PRO PRO A . n
A 1 158 ASP 158 125 125 ASP ASP A . n
A 1 159 ARG 159 126 126 ARG ARG A . n
A 1 160 GLU 160 127 127 GLU GLU A . n
A 1 161 THR 161 128 128 THR THR A . n
A 1 162 ALA 162 129 129 ALA ALA A . n
A 1 163 ALA 163 129 129 ALA ALA A A n
A 1 164 SER 164 129 129 SER SER A B n
A 1 165 LEU 165 130 130 LEU LEU A C n
A 1 166 LEU 166 130 130 LEU LEU A . n
A 1 167 GLN 167 131 131 GLN GLN A . n
A 1 168 ALA 168 132 132 ALA ALA A . n
A 1 169 GLY 169 133 133 GLY GLY A . n
A 1 170 TYR 170 134 134 TYR TYR A . n
A 1 171 LYS 171 135 135 LYS LYS A . n
A 1 172 GLY 172 136 136 GLY GLY A . n
A 1 173 ARG 173 137 137 ARG ARG A . n
A 1 174 VAL 174 138 138 VAL VAL A . n
A 1 175 THR 175 139 139 THR THR A . n
A 1 176 GLY 176 140 140 GLY GLY A . n
A 1 177 TRP 177 141 141 TRP TRP A . n
A 1 178 GLY 178 142 142 GLY GLY A . n
A 1 179 ASN 179 143 143 ASN ASN A . n
A 1 180 LEU 180 144 144 LEU LEU A . n
A 1 181 LYS 181 145 145 LYS LYS A . n
A 1 182 GLU 182 146 146 GLU GLU A . n
A 1 183 THR 183 147 147 THR THR A . n
A 1 184 TRP 184 148 148 TRP TRP A . n
A 1 185 THR 185 149 149 THR THR A . n
A 1 186 ALA 186 149 149 ALA ALA A A n
A 1 187 ASN 187 149 149 ASN ASN A B n
A 1 188 VAL 188 149 149 VAL VAL A C n
A 1 189 GLY 189 149 149 GLY GLY A D n
A 1 190 LYS 190 149 149 LYS LYS A E n
A 1 191 GLY 191 150 150 GLY GLY A . n
A 1 192 GLN 192 151 151 GLN GLN A . n
A 1 193 PRO 193 152 152 PRO PRO A . n
A 1 194 SER 194 153 153 SER SER A . n
A 1 195 VAL 195 154 154 VAL VAL A . n
A 1 196 LEU 196 155 155 LEU LEU A . n
A 1 197 GLN 197 156 156 GLN GLN A . n
A 1 198 VAL 198 157 157 VAL VAL A . n
A 1 199 VAL 199 158 158 VAL VAL A . n
A 1 200 ASN 200 159 159 ASN ASN A . n
A 1 201 LEU 201 160 160 LEU LEU A . n
A 1 202 PRO 202 161 161 PRO PRO A . n
A 1 203 ILE 203 162 162 ILE ILE A . n
A 1 204 VAL 204 163 163 VAL VAL A . n
A 1 205 GLU 205 164 164 GLU GLU A . n
A 1 206 ARG 206 165 165 ARG ARG A . n
A 1 207 PRO 207 166 166 PRO PRO A . n
A 1 208 VAL 208 167 167 VAL VAL A . n
A 1 209 CYS 209 168 168 CYS CYS A . n
A 1 210 LYS 210 169 169 LYS LYS A . n
A 1 211 ASP 211 170 170 ASP ASP A . n
A 1 212 SER 212 171 171 SER SER A . n
A 1 213 THR 213 172 172 THR THR A . n
A 1 214 ARG 214 173 173 ARG ARG A . n
A 1 215 ILE 215 174 174 ILE ILE A . n
A 1 216 ARG 216 175 175 ARG ARG A . n
A 1 217 ILE 217 176 176 ILE ILE A . n
A 1 218 THR 218 177 177 THR THR A . n
A 1 219 ASP 219 178 178 ASP ASP A . n
A 1 220 ASN 220 179 179 ASN ASN A . n
A 1 221 MET 221 180 180 MET MET A . n
A 1 222 PHE 222 181 181 PHE PHE A . n
A 1 223 CYS 223 182 182 CYS CYS A . n
A 1 224 ALA 224 183 183 ALA ALA A . n
A 1 225 GLY 225 184 184 GLY GLY A . n
A 1 226 TYR 226 184 184 TYR TYR A A n
A 1 227 LYS 227 185 185 LYS LYS A . n
A 1 228 PRO 228 186 186 PRO PRO A . n
A 1 229 ASP 229 186 186 ASP ASP A A n
A 1 230 GLU 230 186 186 GLU GLU A B n
A 1 231 GLY 231 186 186 GLY GLY A C n
A 1 232 LYS 232 186 186 LYS LYS A D n
A 1 233 ARG 233 187 187 ARG ARG A . n
A 1 234 GLY 234 188 188 GLY GLY A . n
A 1 235 ASP 235 189 189 ASP ASP A . n
A 1 236 ALA 236 190 190 ALA ALA A . n
A 1 237 CYS 237 191 191 CYS CYS A . n
A 1 238 GLU 238 192 192 GLU GLU A . n
A 1 239 GLY 239 193 193 GLY GLY A . n
A 1 240 ASP 240 194 194 ASP ASP A . n
A 1 241 SER 241 195 195 SER SER A . n
A 1 242 GLY 242 196 196 GLY GLY A . n
A 1 243 GLY 243 197 197 GLY GLY A . n
A 1 244 PRO 244 198 198 PRO PRO A . n
A 1 245 PHE 245 199 199 PHE PHE A . n
A 1 246 VAL 246 200 200 VAL VAL A . n
A 1 247 MET 247 201 201 MET MET A . n
A 1 248 LYS 248 202 202 LYS LYS A . n
A 1 249 SER 249 203 203 SER SER A . n
A 1 250 PRO 250 204 204 PRO PRO A . n
A 1 251 PHE 251 204 204 PHE PHE A A n
A 1 252 ASN 252 204 204 ASN ASN A B n
A 1 253 ASN 253 205 205 ASN ASN A . n
A 1 254 ARG 254 206 206 ARG ARG A . n
A 1 255 TRP 255 207 207 TRP TRP A . n
A 1 256 TYR 256 208 208 TYR TYR A . n
A 1 257 GLN 257 209 209 GLN GLN A . n
A 1 258 MET 258 210 210 MET MET A . n
A 1 259 GLY 259 211 211 GLY GLY A . n
A 1 260 ILE 260 212 212 ILE ILE A . n
A 1 261 VAL 261 213 213 VAL VAL A . n
A 1 262 SER 262 214 214 SER SER A . n
A 1 263 TRP 263 215 215 TRP TRP A . n
A 1 264 GLY 264 216 216 GLY GLY A . n
A 1 265 GLU 265 217 217 GLU GLU A . n
A 1 266 GLY 266 219 219 GLY GLY A . n
A 1 267 CYS 267 220 220 CYS CYS A . n
A 1 268 ASP 268 221 221 ASP ASP A . n
A 1 269 ARG 269 221 221 ARG ARG A A n
A 1 270 ASP 270 222 222 ASP ASP A . n
A 1 271 GLY 271 223 223 GLY GLY A . n
A 1 272 LYS 272 224 224 LYS LYS A . n
A 1 273 TYR 273 225 225 TYR TYR A . n
A 1 274 GLY 274 226 226 GLY GLY A . n
A 1 275 PHE 275 227 227 PHE PHE A . n
A 1 276 TYR 276 228 228 TYR TYR A . n
A 1 277 THR 277 229 229 THR THR A . n
A 1 278 HIS 278 230 230 HIS HIS A . n
A 1 279 VAL 279 231 231 VAL VAL A . n
A 1 280 PHE 280 232 232 PHE PHE A . n
A 1 281 ARG 281 233 233 ARG ARG A . n
A 1 282 LEU 282 234 234 LEU LEU A . n
A 1 283 LYS 283 235 235 LYS LYS A . n
A 1 284 LYS 284 236 236 LYS LYS A . n
A 1 285 TRP 285 237 237 TRP TRP A . n
A 1 286 ILE 286 238 238 ILE ILE A . n
A 1 287 GLN 287 239 239 GLN GLN A . n
A 1 288 LYS 288 240 240 LYS LYS A . n
A 1 289 VAL 289 241 241 VAL VAL A . n
A 1 290 ILE 290 242 242 ILE ILE A . n
A 1 291 ASP 291 243 243 ASP ASP A . n
A 1 292 GLN 292 244 244 GLN GLN A . n
A 1 293 PHE 293 245 245 PHE PHE A . n
A 1 294 GLY 294 246 246 GLY GLY A . n
A 1 295 GLU 295 247 247 GLU ALA A . n
B 2 1 ASP 1 355 355 ASP ASP B . n
B 2 2 PHE 2 356 356 PHE PHE B . n
B 2 3 GLU 3 357 357 GLU GLU B . n
B 2 4 GLU 4 358 358 GLU GLU B . n
B 2 5 ILE 5 359 359 ILE ILE B . n
B 2 6 PRO 6 360 360 PRO PRO B . n
B 2 7 GLU 7 361 361 GLU GLU B . n
B 2 8 GLU 8 362 362 GLU GLU B . n
B 2 9 TYS 9 363 363 TYS TYR B . n
B 2 10 LEU 10 364 364 LEU LEU B . n
B 2 11 GLN 11 365 365 GLN GLN B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 1Z0 1 401 401 1Z0 MEA A .
D 4 NAG 1 250 250 NAG NAG A .
E 5 NA 1 300 600 NA NA A .
F 5 NA 1 301 601 NA NA A .
G 6 HOH 1 501 501 HOH HOH A .
G 6 HOH 2 502 502 HOH HOH A .
G 6 HOH 3 503 503 HOH HOH A .
G 6 HOH 4 504 504 HOH HOH A .
G 6 HOH 5 506 506 HOH HOH A .
G 6 HOH 6 507 507 HOH HOH A .
G 6 HOH 7 508 508 HOH HOH A .
G 6 HOH 8 509 509 HOH HOH A .
G 6 HOH 9 510 510 HOH HOH A .
G 6 HOH 10 511 511 HOH HOH A .
G 6 HOH 11 512 512 HOH HOH A .
G 6 HOH 12 513 513 HOH HOH A .
G 6 HOH 13 514 514 HOH HOH A .
G 6 HOH 14 515 515 HOH HOH A .
G 6 HOH 15 516 516 HOH HOH A .
G 6 HOH 16 518 518 HOH HOH A .
G 6 HOH 17 523 523 HOH HOH A .
G 6 HOH 18 524 524 HOH HOH A .
G 6 HOH 19 525 525 HOH HOH A .
G 6 HOH 20 526 526 HOH HOH A .
G 6 HOH 21 527 527 HOH HOH A .
G 6 HOH 22 528 528 HOH HOH A .
G 6 HOH 23 529 529 HOH HOH A .
G 6 HOH 24 530 530 HOH HOH A .
G 6 HOH 25 531 531 HOH HOH A .
G 6 HOH 26 532 532 HOH HOH A .
G 6 HOH 27 533 533 HOH HOH A .
G 6 HOH 28 534 534 HOH HOH A .
G 6 HOH 29 535 535 HOH HOH A .
G 6 HOH 30 536 536 HOH HOH A .
G 6 HOH 31 537 537 HOH HOH A .
G 6 HOH 32 538 538 HOH HOH A .
G 6 HOH 33 539 539 HOH HOH A .
G 6 HOH 34 540 540 HOH HOH A .
G 6 HOH 35 541 541 HOH HOH A .
G 6 HOH 36 542 542 HOH HOH A .
G 6 HOH 37 543 543 HOH HOH A .
G 6 HOH 38 544 544 HOH HOH A .
G 6 HOH 39 545 545 HOH HOH A .
G 6 HOH 40 546 546 HOH HOH A .
G 6 HOH 41 547 547 HOH HOH A .
G 6 HOH 42 548 548 HOH HOH A .
G 6 HOH 43 549 549 HOH HOH A .
G 6 HOH 44 550 550 HOH HOH A .
G 6 HOH 45 551 551 HOH HOH A .
G 6 HOH 46 552 552 HOH HOH A .
G 6 HOH 47 553 553 HOH HOH A .
G 6 HOH 48 554 554 HOH HOH A .
G 6 HOH 49 555 555 HOH HOH A .
G 6 HOH 50 556 556 HOH HOH A .
G 6 HOH 51 561 561 HOH HOH A .
G 6 HOH 52 562 562 HOH HOH A .
G 6 HOH 53 563 563 HOH HOH A .
G 6 HOH 54 564 564 HOH HOH A .
G 6 HOH 55 565 565 HOH HOH A .
G 6 HOH 56 566 566 HOH HOH A .
G 6 HOH 57 568 568 HOH HOH A .
G 6 HOH 58 571 571 HOH HOH A .
G 6 HOH 59 572 572 HOH HOH A .
G 6 HOH 60 573 573 HOH HOH A .
G 6 HOH 61 574 574 HOH HOH A .
G 6 HOH 62 576 576 HOH HOH A .
G 6 HOH 63 577 577 HOH HOH A .
G 6 HOH 64 579 579 HOH HOH A .
G 6 HOH 65 580 580 HOH HOH A .
G 6 HOH 66 581 581 HOH HOH A .
G 6 HOH 67 582 582 HOH HOH A .
G 6 HOH 68 583 583 HOH HOH A .
G 6 HOH 69 584 584 HOH HOH A .
G 6 HOH 70 585 585 HOH HOH A .
G 6 HOH 71 586 586 HOH HOH A .
G 6 HOH 72 587 587 HOH HOH A .
G 6 HOH 73 588 588 HOH HOH A .
G 6 HOH 74 589 589 HOH HOH A .
G 6 HOH 75 590 590 HOH HOH A .
G 6 HOH 76 591 591 HOH HOH A .
G 6 HOH 77 592 592 HOH HOH A .
G 6 HOH 78 593 593 HOH HOH A .
G 6 HOH 79 595 595 HOH HOH A .
G 6 HOH 80 596 596 HOH HOH A .
G 6 HOH 81 597 597 HOH HOH A .
G 6 HOH 82 598 598 HOH HOH A .
G 6 HOH 83 599 599 HOH HOH A .
G 6 HOH 84 601 601 HOH HOH A .
G 6 HOH 85 602 602 HOH HOH A .
G 6 HOH 86 604 604 HOH HOH A .
G 6 HOH 87 605 605 HOH HOH A .
G 6 HOH 88 607 607 HOH HOH A .
G 6 HOH 89 608 608 HOH HOH A .
G 6 HOH 90 609 609 HOH HOH A .
G 6 HOH 91 614 614 HOH HOH A .
G 6 HOH 92 615 615 HOH HOH A .
G 6 HOH 93 617 617 HOH HOH A .
G 6 HOH 94 618 618 HOH HOH A .
G 6 HOH 95 621 621 HOH HOH A .
G 6 HOH 96 626 626 HOH HOH A .
G 6 HOH 97 629 629 HOH HOH A .
G 6 HOH 98 632 632 HOH HOH A .
G 6 HOH 99 633 633 HOH HOH A .
G 6 HOH 100 634 634 HOH HOH A .
G 6 HOH 101 637 637 HOH HOH A .
G 6 HOH 102 638 638 HOH HOH A .
G 6 HOH 103 642 642 HOH HOH A .
G 6 HOH 104 643 643 HOH HOH A .
G 6 HOH 105 646 646 HOH HOH A .
G 6 HOH 106 647 647 HOH HOH A .
G 6 HOH 107 648 648 HOH HOH A .
G 6 HOH 108 649 649 HOH HOH A .
G 6 HOH 109 650 650 HOH HOH A .
G 6 HOH 110 651 651 HOH HOH A .
G 6 HOH 111 653 653 HOH HOH A .
G 6 HOH 112 656 656 HOH HOH A .
G 6 HOH 113 657 657 HOH HOH A .
G 6 HOH 114 659 659 HOH HOH A .
G 6 HOH 115 661 661 HOH HOH A .
G 6 HOH 116 662 662 HOH HOH A .
G 6 HOH 117 663 663 HOH HOH A .
G 6 HOH 118 668 668 HOH HOH A .
G 6 HOH 119 669 669 HOH HOH A .
G 6 HOH 120 670 670 HOH HOH A .
G 6 HOH 121 672 672 HOH HOH A .
G 6 HOH 122 673 673 HOH HOH A .
G 6 HOH 123 674 674 HOH HOH A .
G 6 HOH 124 675 675 HOH HOH A .
G 6 HOH 125 676 676 HOH HOH A .
G 6 HOH 126 677 677 HOH HOH A .
G 6 HOH 127 678 678 HOH HOH A .
G 6 HOH 128 679 679 HOH HOH A .
G 6 HOH 129 680 680 HOH HOH A .
G 6 HOH 130 681 681 HOH HOH A .
G 6 HOH 131 684 684 HOH HOH A .
G 6 HOH 132 685 685 HOH HOH A .
G 6 HOH 133 686 686 HOH HOH A .
G 6 HOH 134 687 687 HOH HOH A .
G 6 HOH 135 690 690 HOH HOH A .
G 6 HOH 136 693 693 HOH HOH A .
G 6 HOH 137 694 694 HOH HOH A .
G 6 HOH 138 695 695 HOH HOH A .
G 6 HOH 139 696 696 HOH HOH A .
G 6 HOH 140 697 697 HOH HOH A .
G 6 HOH 141 699 699 HOH HOH A .
G 6 HOH 142 700 700 HOH HOH A .
G 6 HOH 143 702 702 HOH HOH A .
G 6 HOH 144 705 705 HOH HOH A .
G 6 HOH 145 706 706 HOH HOH A .
G 6 HOH 146 708 708 HOH HOH A .
G 6 HOH 147 711 711 HOH HOH A .
G 6 HOH 148 713 713 HOH HOH A .
G 6 HOH 149 714 714 HOH HOH A .
G 6 HOH 150 715 715 HOH HOH A .
G 6 HOH 151 716 716 HOH HOH A .
G 6 HOH 152 717 717 HOH HOH A .
G 6 HOH 153 719 719 HOH HOH A .
G 6 HOH 154 723 723 HOH HOH A .
G 6 HOH 155 726 726 HOH HOH A .
G 6 HOH 156 727 727 HOH HOH A .
G 6 HOH 157 729 729 HOH HOH A .
G 6 HOH 158 732 732 HOH HOH A .
G 6 HOH 159 733 733 HOH HOH A .
G 6 HOH 160 736 736 HOH HOH A .
G 6 HOH 161 737 737 HOH HOH A .
G 6 HOH 162 739 739 HOH HOH A .
G 6 HOH 163 740 740 HOH HOH A .
G 6 HOH 164 741 741 HOH HOH A .
G 6 HOH 165 742 742 HOH HOH A .
G 6 HOH 166 743 743 HOH HOH A .
G 6 HOH 167 745 745 HOH HOH A .
G 6 HOH 168 747 747 HOH HOH A .
G 6 HOH 169 748 748 HOH HOH A .
G 6 HOH 170 749 749 HOH HOH A .
G 6 HOH 171 750 750 HOH HOH A .
G 6 HOH 172 751 751 HOH HOH A .
G 6 HOH 173 752 752 HOH HOH A .
G 6 HOH 174 753 753 HOH HOH A .
G 6 HOH 175 754 754 HOH HOH A .
G 6 HOH 176 755 755 HOH HOH A .
G 6 HOH 177 756 756 HOH HOH A .
G 6 HOH 178 757 757 HOH HOH A .
G 6 HOH 179 758 758 HOH HOH A .
G 6 HOH 180 759 759 HOH HOH A .
G 6 HOH 181 771 771 HOH HOH A .
G 6 HOH 182 772 772 HOH HOH A .
G 6 HOH 183 773 773 HOH HOH A .
G 6 HOH 184 774 774 HOH HOH A .
G 6 HOH 185 775 775 HOH HOH A .
G 6 HOH 186 776 776 HOH HOH A .
G 6 HOH 187 777 777 HOH HOH A .
G 6 HOH 188 778 778 HOH HOH A .
G 6 HOH 189 779 779 HOH HOH A .
G 6 HOH 190 780 780 HOH HOH A .
G 6 HOH 191 781 781 HOH HOH A .
G 6 HOH 192 782 782 HOH HOH A .
G 6 HOH 193 783 783 HOH HOH A .
G 6 HOH 194 784 784 HOH HOH A .
G 6 HOH 195 785 785 HOH HOH A .
G 6 HOH 196 786 786 HOH HOH A .
G 6 HOH 197 787 787 HOH HOH A .
G 6 HOH 198 788 788 HOH HOH A .
G 6 HOH 199 789 789 HOH HOH A .
G 6 HOH 200 790 790 HOH HOH A .
G 6 HOH 201 791 791 HOH HOH A .
G 6 HOH 202 792 792 HOH HOH A .
G 6 HOH 203 793 793 HOH HOH A .
G 6 HOH 204 795 795 HOH HOH A .
G 6 HOH 205 796 796 HOH HOH A .
G 6 HOH 206 797 797 HOH HOH A .
G 6 HOH 207 798 798 HOH HOH A .
G 6 HOH 208 799 799 HOH HOH A .
G 6 HOH 209 800 800 HOH HOH A .
G 6 HOH 210 801 801 HOH HOH A .
G 6 HOH 211 802 802 HOH HOH A .
G 6 HOH 212 803 803 HOH HOH A .
G 6 HOH 213 804 804 HOH HOH A .
G 6 HOH 214 805 805 HOH HOH A .
G 6 HOH 215 806 806 HOH HOH A .
G 6 HOH 216 807 807 HOH HOH A .
G 6 HOH 217 809 809 HOH HOH A .
G 6 HOH 218 811 811 HOH HOH A .
G 6 HOH 219 812 812 HOH HOH A .
G 6 HOH 220 814 814 HOH HOH A .
G 6 HOH 221 815 815 HOH HOH A .
G 6 HOH 222 816 816 HOH HOH A .
G 6 HOH 223 817 817 HOH HOH A .
G 6 HOH 224 818 818 HOH HOH A .
G 6 HOH 225 819 819 HOH HOH A .
G 6 HOH 226 820 820 HOH HOH A .
G 6 HOH 227 821 821 HOH HOH A .
G 6 HOH 228 822 822 HOH HOH A .
G 6 HOH 229 823 823 HOH HOH A .
G 6 HOH 230 824 824 HOH HOH A .
G 6 HOH 231 825 825 HOH HOH A .
G 6 HOH 232 826 826 HOH HOH A .
G 6 HOH 233 827 827 HOH HOH A .
G 6 HOH 234 831 831 HOH HOH A .
G 6 HOH 235 832 832 HOH HOH A .
G 6 HOH 236 833 833 HOH HOH A .
G 6 HOH 237 835 835 HOH HOH A .
G 6 HOH 238 836 836 HOH HOH A .
G 6 HOH 239 837 837 HOH HOH A .
G 6 HOH 240 838 838 HOH HOH A .
G 6 HOH 241 839 839 HOH HOH A .
G 6 HOH 242 840 840 HOH HOH A .
G 6 HOH 243 841 841 HOH HOH A .
G 6 HOH 244 842 842 HOH HOH A .
G 6 HOH 245 843 843 HOH HOH A .
G 6 HOH 246 844 844 HOH HOH A .
G 6 HOH 247 845 845 HOH HOH A .
G 6 HOH 248 846 846 HOH HOH A .
G 6 HOH 249 847 847 HOH HOH A .
G 6 HOH 250 848 848 HOH HOH A .
G 6 HOH 251 849 849 HOH HOH A .
G 6 HOH 252 850 850 HOH HOH A .
G 6 HOH 253 851 851 HOH HOH A .
G 6 HOH 254 852 852 HOH HOH A .
G 6 HOH 255 859 859 HOH HOH A .
G 6 HOH 256 860 860 HOH HOH A .
G 6 HOH 257 861 861 HOH HOH A .
G 6 HOH 258 862 862 HOH HOH A .
G 6 HOH 259 863 863 HOH HOH A .
G 6 HOH 260 864 864 HOH HOH A .
G 6 HOH 261 866 866 HOH HOH A .
G 6 HOH 262 867 867 HOH HOH A .
G 6 HOH 263 868 868 HOH HOH A .
G 6 HOH 264 870 870 HOH HOH A .
G 6 HOH 265 873 873 HOH HOH A .
G 6 HOH 266 874 874 HOH HOH A .
G 6 HOH 267 878 878 HOH HOH A .
G 6 HOH 268 879 879 HOH HOH A .
G 6 HOH 269 880 880 HOH HOH A .
G 6 HOH 270 883 883 HOH HOH A .
G 6 HOH 271 887 887 HOH HOH A .
G 6 HOH 272 888 888 HOH HOH A .
G 6 HOH 273 889 889 HOH HOH A .
G 6 HOH 274 890 890 HOH HOH A .
G 6 HOH 275 891 891 HOH HOH A .
G 6 HOH 276 892 892 HOH HOH A .
G 6 HOH 277 893 893 HOH HOH A .
G 6 HOH 278 894 894 HOH HOH A .
G 6 HOH 279 896 896 HOH HOH A .
G 6 HOH 280 898 898 HOH HOH A .
G 6 HOH 281 899 899 HOH HOH A .
G 6 HOH 282 902 902 HOH HOH A .
G 6 HOH 283 904 904 HOH HOH A .
G 6 HOH 284 905 905 HOH HOH A .
G 6 HOH 285 906 906 HOH HOH A .
G 6 HOH 286 908 908 HOH HOH A .
G 6 HOH 287 913 913 HOH HOH A .
G 6 HOH 288 915 915 HOH HOH A .
G 6 HOH 289 916 916 HOH HOH A .
G 6 HOH 290 935 935 HOH HOH A .
G 6 HOH 291 936 936 HOH HOH A .
G 6 HOH 292 938 938 HOH HOH A .
G 6 HOH 293 946 946 HOH HOH A .
G 6 HOH 294 947 947 HOH HOH A .
G 6 HOH 295 948 948 HOH HOH A .
G 6 HOH 296 950 950 HOH HOH A .
G 6 HOH 297 951 951 HOH HOH A .
G 6 HOH 298 953 953 HOH HOH A .
G 6 HOH 299 958 958 HOH HOH A .
G 6 HOH 300 959 959 HOH HOH A .
G 6 HOH 301 960 960 HOH HOH A .
G 6 HOH 302 961 961 HOH HOH A .
G 6 HOH 303 962 962 HOH HOH A .
G 6 HOH 304 963 963 HOH HOH A .
G 6 HOH 305 965 965 HOH HOH A .
G 6 HOH 306 971 971 HOH HOH A .
G 6 HOH 307 972 972 HOH HOH A .
G 6 HOH 308 974 974 HOH HOH A .
G 6 HOH 309 976 976 HOH HOH A .
G 6 HOH 310 979 979 HOH HOH A .
G 6 HOH 311 980 980 HOH HOH A .
G 6 HOH 312 981 981 HOH HOH A .
G 6 HOH 313 982 982 HOH HOH A .
G 6 HOH 314 983 983 HOH HOH A .
G 6 HOH 315 984 984 HOH HOH A .
G 6 HOH 316 985 985 HOH HOH A .
G 6 HOH 317 986 986 HOH HOH A .
G 6 HOH 318 987 987 HOH HOH A .
G 6 HOH 319 988 988 HOH HOH A .
G 6 HOH 320 992 992 HOH HOH A .
G 6 HOH 321 993 993 HOH HOH A .
G 6 HOH 322 995 995 HOH HOH A .
G 6 HOH 323 996 996 HOH HOH A .
G 6 HOH 324 998 998 HOH HOH A .
G 6 HOH 325 999 999 HOH HOH A .
G 6 HOH 326 1001 1001 HOH HOH A .
G 6 HOH 327 1002 1002 HOH HOH A .
G 6 HOH 328 1004 1004 HOH HOH A .
G 6 HOH 329 1005 1005 HOH HOH A .
G 6 HOH 330 1006 1006 HOH HOH A .
G 6 HOH 331 1007 1007 HOH HOH A .
G 6 HOH 332 1008 1008 HOH HOH A .
G 6 HOH 333 1009 1009 HOH HOH A .
H 6 HOH 1 558 558 HOH HOH B .
H 6 HOH 2 560 560 HOH HOH B .
H 6 HOH 3 612 612 HOH HOH B .
H 6 HOH 4 613 613 HOH HOH B .
H 6 HOH 5 616 616 HOH HOH B .
H 6 HOH 6 746 746 HOH HOH B .
H 6 HOH 7 794 794 HOH HOH B .
H 6 HOH 8 855 855 HOH HOH B .
H 6 HOH 9 869 869 HOH HOH B .
H 6 HOH 10 872 872 HOH HOH B .
H 6 HOH 11 875 875 HOH HOH B .
H 6 HOH 12 969 969 HOH HOH B .
H 6 HOH 13 970 970 HOH HOH B .
H 6 HOH 14 977 977 HOH HOH B .
H 6 HOH 15 997 997 HOH HOH B .
H 6 HOH 16 1003 1003 HOH HOH B .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A THR 1 H OG1 ? A THR 1 OG1
2 1 Y 1 A THR 1 H CG2 ? A THR 1 CG2
3 1 Y 1 A PHE 1 G CG ? A PHE 2 CG
4 1 Y 1 A PHE 1 G CD1 ? A PHE 2 CD1
5 1 Y 1 A PHE 1 G CD2 ? A PHE 2 CD2
6 1 Y 1 A PHE 1 G CE1 ? A PHE 2 CE1
7 1 Y 1 A PHE 1 G CE2 ? A PHE 2 CE2
8 1 Y 1 A PHE 1 G CZ ? A PHE 2 CZ
9 1 Y 1 A ASP 14 M CB ? A ASP 34 CB
10 1 Y 1 A ASP 14 M CG ? A ASP 34 CG
11 1 Y 1 A ASP 14 M OD1 ? A ASP 34 OD1
12 1 Y 1 A ASP 14 M OD2 ? A ASP 34 OD2
13 1 Y 1 A GLU 247 ? CG ? A GLU 295 CG
14 1 Y 1 A GLU 247 ? CD ? A GLU 295 CD
15 1 Y 1 A GLU 247 ? OE1 ? A GLU 295 OE1
16 1 Y 1 A GLU 247 ? OE2 ? A GLU 295 OE2
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
DENZO 'data reduction' . ? 1
SCALEPACK 'data scaling' . ? 2
AMoRE phasing . ? 3
X-PLOR refinement 3.851 ? 4
#
_cell.entry_id 1DOJ
_cell.length_a 62.982
_cell.length_b 117.521
_cell.length_c 47.989
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 4
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 1DOJ
_symmetry.space_group_name_H-M 'P 21 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 18
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 1DOJ
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.47
_exptl_crystal.density_percent_sol 50.21
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 295.0
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.5
_exptl_crystal_grow.pdbx_details
'0.75 sodium acetate, 0.01% (w/v), 20% polyethylene glycol 4000 (w/v), pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295.0K'
_exptl_crystal_grow.pdbx_pH_range .
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type RIGAKU
_diffrn_detector.pdbx_collection_date 1998-03-04
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type RIGAKU
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength 1.5418
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1DOJ
_reflns.observed_criterion_sigma_I 0
_reflns.observed_criterion_sigma_F 0
_reflns.d_resolution_low 99.0
_reflns.d_resolution_high 1.66
_reflns.number_obs 126549
_reflns.number_all 126549
_reflns.percent_possible_obs 87.1
_reflns.pdbx_Rmerge_I_obs 0.04
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 16.3
_reflns.B_iso_Wilson_estimate 16.2
_reflns.pdbx_redundancy 5
_reflns.R_free_details ?
_reflns.observed_criterion_F_min ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 1.66
_reflns_shell.d_res_low ?
_reflns_shell.percent_possible_all 87.1
_reflns_shell.Rmerge_I_obs 0.2
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.pdbx_redundancy 3
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 1DOJ
_refine.ls_number_reflns_obs 33357
_refine.ls_number_reflns_all 39616
_refine.pdbx_ls_sigma_I 0
_refine.pdbx_ls_sigma_F 3.0
_refine.pdbx_data_cutoff_high_absF 1520225.35
_refine.pdbx_data_cutoff_low_absF 0.00
_refine.ls_d_res_low 8.00
_refine.ls_d_res_high 1.70
_refine.ls_percent_reflns_obs 84.2
_refine.ls_R_factor_obs 0.174
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.174
_refine.ls_R_factor_R_free 0.217
_refine.ls_R_factor_R_free_error 0.004
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 10.0
_refine.ls_number_reflns_R_free 3322
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean 19.5
_refine.aniso_B[1][1] 1.02
_refine.aniso_B[2][2] -1.45
_refine.aniso_B[3][3] 0.43
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details 'FLAT MODEL'
_refine.solvent_model_param_ksol 0.490
_refine.solvent_model_param_bsol 93.48
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'The Bijvoet differences were used in phasing'
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model RESTRAINED
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.pdbx_overall_phase_error ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.entry_id 1DOJ
_refine_analyze.Luzzati_coordinate_error_obs 0.18
_refine_analyze.Luzzati_sigma_a_obs 0.13
_refine_analyze.Luzzati_d_res_low_obs 5.00
_refine_analyze.Luzzati_coordinate_error_free 0.21
_refine_analyze.Luzzati_sigma_a_free 0.16
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen ?
_refine_analyze.pdbx_Luzzati_d_res_high_obs ?
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 2452
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 58
_refine_hist.number_atoms_solvent 349
_refine_hist.number_atoms_total 2859
_refine_hist.d_res_high 1.70
_refine_hist.d_res_low 8.00
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
c_bond_d 0.01 ? ? ? 'X-RAY DIFFRACTION' ?
c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ?
c_dihedral_angle_d 26.3 ? ? ? 'X-RAY DIFFRACTION' ?
c_improper_angle_d 0.61 ? ? ? 'X-RAY DIFFRACTION' ?
c_mcbond_it 1.40 1.50 ? ? 'X-RAY DIFFRACTION' ?
c_mcangle_it 2.06 2.00 ? ? 'X-RAY DIFFRACTION' ?
c_scbond_it 2.42 2.00 ? ? 'X-RAY DIFFRACTION' ?
c_scangle_it 3.48 2.50 ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 6
_refine_ls_shell.d_res_high 1.70
_refine_ls_shell.d_res_low 1.81
_refine_ls_shell.number_reflns_R_work 3311
_refine_ls_shell.R_factor_R_work 0.276
_refine_ls_shell.percent_reflns_obs 56.4
_refine_ls_shell.R_factor_R_free 0.298
_refine_ls_shell.R_factor_R_free_error 0.016
_refine_ls_shell.percent_reflns_R_free 10.0
_refine_ls_shell.number_reflns_R_free 3670
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
loop_
_pdbx_xplor_file.serial_no
_pdbx_xplor_file.param_file
_pdbx_xplor_file.topol_file
_pdbx_xplor_file.pdbx_refine_id
1 PROTEIN_REP.PARAM TOPHCSDX.PRO 'X-RAY DIFFRACTION'
2 INH3.PARAM TOPH19.SOL 'X-RAY DIFFRACTION'
3 ION.PARAM INH2.TOP 'X-RAY DIFFRACTION'
4 NAG.PARAM NAG.TOP 'X-RAY DIFFRACTION'
5 ? SULF.TOP 'X-RAY DIFFRACTION'
#
_database_PDB_matrix.entry_id 1DOJ
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1DOJ
_struct.title 'Crystal structure of human alpha-thrombin*RWJ-51438 complex at 1.7 A'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1DOJ
_struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR'
_struct_keywords.text 'thrombin, serine protease, enzyme inhibition, HYDROLASE-HYDROLASE INHIBITOR COMPLEX'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 5 ?
F N N 5 ?
G N N 6 ?
H N N 6 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.entity_id
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_db_isoform
1 UNP THRB_HUMAN 1 P00734 ? ? ?
2 UNP HIRV2_HIRME 2 P09945 ? ? ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1DOJ A 1 H 295 ? P00734 328 ? 622 ? 1 247
2 2 1DOJ B 1 ? 11 ? P09945 62 ? 72 ? 355 365
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 PHE A 15 ? SER A 19 ? PHE A 7 SER A 11 5 ? 5
HELX_P HELX_P2 3 ALA A 77 ? LEU A 81 ? ALA A 55 LEU A 59 1 ? 5
HELX_P HELX_P3 5 ASP A 158 ? LEU A 166 ? ASP A 125 LEU A 130 1 ? 9
HELX_P HELX_P4 6 GLU A 205 ? SER A 212 ? GLU A 164 SER A 171 1 ? 8
HELX_P HELX_P5 8 VAL A 279 ? PHE A 293 ? VAL A 231 PHE A 245 1 ? 15
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 155 SG ? ? A CYS 1 A CYS 122 1_555 ? ? ? ? ? ? ? 2.032 ? ?
disulf2 disulf ? ? A CYS 64 SG ? ? ? 1_555 A CYS 80 SG ? ? A CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? 2.027 ? ?
disulf3 disulf ? ? A CYS 209 SG ? ? ? 1_555 A CYS 223 SG ? ? A CYS 168 A CYS 182 1_555 ? ? ? ? ? ? ? 2.027 ? ?
disulf4 disulf ? ? A CYS 237 SG ? ? ? 1_555 A CYS 267 SG ? ? A CYS 191 A CYS 220 1_555 ? ? ? ? ? ? ? 2.032 ? ?
covale1 covale one ? A ASN 89 ND2 ? G ? 1_555 D NAG . C1 ? ? A ASN 60 A NAG 250 1_555 ? ? ? ? ? ? ? 1.460 ? N-Glycosylation
covale2 covale none ? A SER 241 OG ? ? ? 1_555 C 1Z0 . C4 ? ? A SER 195 A 1Z0 401 1_555 ? ? ? ? ? ? ? 1.419 ? ?
covale3 covale both ? B GLU 8 C ? ? ? 1_555 B TYS 9 N ? ? B GLU 362 B TYS 363 1_555 ? ? ? ? ? ? ? 1.329 ? ?
covale4 covale both ? B TYS 9 C ? ? ? 1_555 B LEU 10 N ? ? B TYS 363 B LEU 364 1_555 ? ? ? ? ? ? ? 1.328 ? ?
metalc1 metalc ? ? A LYS 210 O ? ? ? 1_555 F NA . NA ? ? A LYS 169 A NA 301 1_555 ? ? ? ? ? ? ? 2.812 ? ?
metalc2 metalc ? ? A THR 213 O ? ? ? 1_555 F NA . NA ? ? A THR 172 A NA 301 1_555 ? ? ? ? ? ? ? 2.740 ? ?
metalc3 metalc ? ? A ILE 215 O ? ? ? 1_555 F NA . NA ? ? A ILE 174 A NA 301 1_555 ? ? ? ? ? ? ? 2.728 ? ?
metalc4 metalc ? ? A ARG 269 O ? A ? 1_555 E NA . NA ? ? A ARG 221 A NA 300 1_555 ? ? ? ? ? ? ? 2.397 ? ?
metalc5 metalc ? ? A LYS 272 O ? ? ? 1_555 E NA . NA ? ? A LYS 224 A NA 300 1_555 ? ? ? ? ? ? ? 2.468 ? ?
metalc6 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 300 A HOH 531 1_555 ? ? ? ? ? ? ? 2.634 ? ?
metalc7 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 300 A HOH 595 1_555 ? ? ? ? ? ? ? 2.606 ? ?
metalc8 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 300 A HOH 713 1_555 ? ? ? ? ? ? ? 2.470 ? ?
metalc9 metalc ? ? E NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 300 A HOH 714 1_555 ? ? ? ? ? ? ? 2.508 ? ?
metalc10 metalc ? ? F NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 301 A HOH 684 1_555 ? ? ? ? ? ? ? 2.882 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
disulf ? ?
covale ? ?
metalc ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 O ? A LYS 210 ? A LYS 169 ? 1_555 NA ? F NA . ? A NA 301 ? 1_555 O ? A THR 213 ? A THR 172 ? 1_555 63.8 ?
2 O ? A LYS 210 ? A LYS 169 ? 1_555 NA ? F NA . ? A NA 301 ? 1_555 O ? A ILE 215 ? A ILE 174 ? 1_555 143.0 ?
3 O ? A THR 213 ? A THR 172 ? 1_555 NA ? F NA . ? A NA 301 ? 1_555 O ? A ILE 215 ? A ILE 174 ? 1_555 91.4 ?
4 O ? A LYS 210 ? A LYS 169 ? 1_555 NA ? F NA . ? A NA 301 ? 1_555 O ? G HOH . ? A HOH 684 ? 1_555 121.6 ?
5 O ? A THR 213 ? A THR 172 ? 1_555 NA ? F NA . ? A NA 301 ? 1_555 O ? G HOH . ? A HOH 684 ? 1_555 164.7 ?
6 O ? A ILE 215 ? A ILE 174 ? 1_555 NA ? F NA . ? A NA 301 ? 1_555 O ? G HOH . ? A HOH 684 ? 1_555 89.8 ?
7 O ? A ARG 269 ? A ARG 221 A 1_555 NA ? E NA . ? A NA 300 ? 1_555 O ? A LYS 272 ? A LYS 224 ? 1_555 90.4 ?
8 O ? A ARG 269 ? A ARG 221 A 1_555 NA ? E NA . ? A NA 300 ? 1_555 O ? G HOH . ? A HOH 531 ? 1_555 157.7 ?
9 O ? A LYS 272 ? A LYS 224 ? 1_555 NA ? E NA . ? A NA 300 ? 1_555 O ? G HOH . ? A HOH 531 ? 1_555 68.3 ?
10 O ? A ARG 269 ? A ARG 221 A 1_555 NA ? E NA . ? A NA 300 ? 1_555 O ? G HOH . ? A HOH 595 ? 1_555 90.0 ?
11 O ? A LYS 272 ? A LYS 224 ? 1_555 NA ? E NA . ? A NA 300 ? 1_555 O ? G HOH . ? A HOH 595 ? 1_555 93.4 ?
12 O ? G HOH . ? A HOH 531 ? 1_555 NA ? E NA . ? A NA 300 ? 1_555 O ? G HOH . ? A HOH 595 ? 1_555 85.2 ?
13 O ? A ARG 269 ? A ARG 221 A 1_555 NA ? E NA . ? A NA 300 ? 1_555 O ? G HOH . ? A HOH 713 ? 1_555 95.1 ?
14 O ? A LYS 272 ? A LYS 224 ? 1_555 NA ? E NA . ? A NA 300 ? 1_555 O ? G HOH . ? A HOH 713 ? 1_555 81.3 ?
15 O ? G HOH . ? A HOH 531 ? 1_555 NA ? E NA . ? A NA 300 ? 1_555 O ? G HOH . ? A HOH 713 ? 1_555 88.2 ?
16 O ? G HOH . ? A HOH 595 ? 1_555 NA ? E NA . ? A NA 300 ? 1_555 O ? G HOH . ? A HOH 713 ? 1_555 172.7 ?
17 O ? A ARG 269 ? A ARG 221 A 1_555 NA ? E NA . ? A NA 300 ? 1_555 O ? G HOH . ? A HOH 714 ? 1_555 110.8 ?
18 O ? A LYS 272 ? A LYS 224 ? 1_555 NA ? E NA . ? A NA 300 ? 1_555 O ? G HOH . ? A HOH 714 ? 1_555 158.8 ?
19 O ? G HOH . ? A HOH 531 ? 1_555 NA ? E NA . ? A NA 300 ? 1_555 O ? G HOH . ? A HOH 714 ? 1_555 90.8 ?
20 O ? G HOH . ? A HOH 595 ? 1_555 NA ? E NA . ? A NA 300 ? 1_555 O ? G HOH . ? A HOH 714 ? 1_555 88.3 ?
21 O ? G HOH . ? A HOH 713 ? 1_555 NA ? E NA . ? A NA 300 ? 1_555 O ? G HOH . ? A HOH 714 ? 1_555 94.8 ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 TYS B 9 ? . . . . TYS B 363 ? 1_555 . . . . . . . TYR 1 TYS Sulfation 'Named protein modification'
2 NAG D . ? ASN A 89 ? NAG A 250 ? 1_555 ASN A 60 G 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
3 1Z0 C . ? SER A 241 ? 1Z0 A 401 ? 1_555 SER A 195 ? 1_555 C4 OG SER 1 1Z0 None 'Covalent chemical modification'
4 CYS A 9 ? CYS A 155 ? CYS A 1 ? 1_555 CYS A 122 ? 1_555 SG SG . . . None 'Disulfide bridge'
5 CYS A 64 ? CYS A 80 ? CYS A 42 ? 1_555 CYS A 58 ? 1_555 SG SG . . . None 'Disulfide bridge'
6 CYS A 209 ? CYS A 223 ? CYS A 168 ? 1_555 CYS A 182 ? 1_555 SG SG . . . None 'Disulfide bridge'
7 CYS A 237 ? CYS A 267 ? CYS A 191 ? 1_555 CYS A 220 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
_struct_mon_prot_cis.pdbx_id 1
_struct_mon_prot_cis.label_comp_id SER
_struct_mon_prot_cis.label_seq_id 58
_struct_mon_prot_cis.label_asym_id A
_struct_mon_prot_cis.label_alt_id .
_struct_mon_prot_cis.pdbx_PDB_ins_code A
_struct_mon_prot_cis.auth_comp_id SER
_struct_mon_prot_cis.auth_seq_id 36
_struct_mon_prot_cis.auth_asym_id A
_struct_mon_prot_cis.pdbx_label_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_label_seq_id_2 59
_struct_mon_prot_cis.pdbx_label_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_ins_code_2 ?
_struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_auth_seq_id_2 37
_struct_mon_prot_cis.pdbx_auth_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_model_num 1
_struct_mon_prot_cis.pdbx_omega_angle -0.07
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 7 ?
B ? 7 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
A 3 4 ? anti-parallel
A 4 5 ? anti-parallel
A 5 6 ? anti-parallel
A 6 7 ? anti-parallel
B 1 2 ? anti-parallel
B 2 3 ? anti-parallel
B 3 4 ? anti-parallel
B 4 5 ? anti-parallel
B 5 6 ? anti-parallel
B 6 7 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 SER A 41 ? ASP A 42 ? SER A 20 ASP A 21
A 2 GLN A 197 ? PRO A 202 ? GLN A 156 PRO A 161
A 3 LYS A 171 ? GLY A 176 ? LYS A 135 GLY A 140
A 4 PRO A 244 ? LYS A 248 ? PRO A 198 LYS A 202
A 5 TRP A 255 ? TRP A 263 ? TRP A 207 TRP A 215
A 6 GLY A 274 ? HIS A 278 ? GLY A 226 HIS A 230
A 7 MET A 221 ? ALA A 224 ? MET A 180 ALA A 183
B 1 GLN A 51 ? ARG A 56 ? GLN A 30 ARG A 35
B 2 GLU A 61 ? LEU A 68 ? GLU A 39 LEU A 46
B 3 TRP A 73 ? THR A 76 ? TRP A 51 THR A 54
B 4 ALA A 137 ? LEU A 141 ? ALA A 104 LEU A 108
B 5 LYS A 113 ? ILE A 122 ? LYS A 81 ILE A 90
B 6 LEU A 95 ? ILE A 99 ? LEU A 64 ILE A 68
B 7 GLN A 51 ? ARG A 56 ? GLN A 30 ARG A 35
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 O SER A 41 ? O SER A 20 N VAL A 198 ? N VAL A 157
A 2 3 O LEU A 201 ? O LEU A 160 N GLY A 172 ? N GLY A 136
A 3 4 N THR A 175 ? N THR A 139 O PRO A 244 ? O PRO A 198
A 4 5 O MET A 247 ? O MET A 201 N TYR A 256 ? N TYR A 208
A 5 6 O TRP A 263 ? O TRP A 215 N PHE A 275 ? N PHE A 227
A 6 7 N TYR A 276 ? N TYR A 228 O PHE A 222 ? O PHE A 181
B 1 2 N ARG A 56 ? N ARG A 35 O GLU A 61 ? O GLU A 39
B 2 3 O SER A 67 ? O SER A 45 N LEU A 75 ? N LEU A 53
B 3 4 O THR A 76 ? O THR A 54 N ALA A 137 ? N ALA A 104
B 4 5 O LYS A 140 ? O LYS A 107 N GLU A 118 ? N GLU A 86
B 5 6 N LEU A 117 ? N LEU A 85 O LEU A 95 ? O LEU A 64
B 6 7 N ARG A 98 ? N ARG A 67 O MET A 53 ? O MET A 32
#
_pdbx_entry_details.entry_id 1DOJ
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 PHE A 1 G ? -144.81 -15.98
2 1 PHE A 7 ? ? -132.94 -86.97
3 1 ASN A 60 G ? -163.05 84.37
4 1 HIS A 71 ? ? -130.71 -57.54
5 1 ILE A 79 ? ? -120.15 -57.99
6 1 GLU A 97 A ? -107.42 -69.60
7 1 SER A 214 ? ? -109.61 -69.79
#
loop_
_pdbx_validate_chiral.id
_pdbx_validate_chiral.PDB_model_num
_pdbx_validate_chiral.auth_atom_id
_pdbx_validate_chiral.label_alt_id
_pdbx_validate_chiral.auth_asym_id
_pdbx_validate_chiral.auth_comp_id
_pdbx_validate_chiral.auth_seq_id
_pdbx_validate_chiral.PDB_ins_code
_pdbx_validate_chiral.details
_pdbx_validate_chiral.omega
1 1 C2 ? A NAG 250 ? PLANAR .
2 1 C3 ? A NAG 250 ? PLANAR .
3 1 C4 ? A NAG 250 ? PLANAR .
#
_pdbx_molecule_features.prd_id PRD_000623
_pdbx_molecule_features.name RWJ-51438
_pdbx_molecule_features.type Peptide-like
_pdbx_molecule_features.class 'Thrombin inhibitor'
_pdbx_molecule_features.details ?
#
_pdbx_molecule.instance_id 1
_pdbx_molecule.prd_id PRD_000623
_pdbx_molecule.asym_id C
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A ASN 89 A ASN 60 G ASN 'GLYCOSYLATION SITE'
2 B TYS 9 B TYS 363 ? TYR O-SULFO-L-TYROSINE
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A GLY 14 L A GLY 35
2 1 Y 1 A ARG 15 ? A ARG 36
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
1Z0 N N N N 1
1Z0 C3 C N R 2
1Z0 C C N N 3
1Z0 O O N N 4
1Z0 "C'" C N N 5
1Z0 "C1'" C Y N 6
1Z0 "C2'" C Y N 7
1Z0 "C6'" C Y N 8
1Z0 "C3'" C Y N 9
1Z0 "C5'" C Y N 10
1Z0 "C4'" C Y N 11
1Z0 C1 C N N 12
1Z0 N1 N N N 13
1Z0 CA C N S 14
1Z0 C2 C N N 15
1Z0 O1 O N N 16
1Z0 CB C N N 17
1Z0 CG C N N 18
1Z0 CD C N N 19
1Z0 N2 N N N 20
1Z0 CA1 C N S 21
1Z0 CB1 C N N 22
1Z0 CG1 C N N 23
1Z0 CD1 C N N 24
1Z0 NE N N N 25
1Z0 CZ C N N 26
1Z0 NH1 N N N 27
1Z0 NH2 N N N 28
1Z0 N5 N Y N 29
1Z0 S5 S Y N 30
1Z0 C5 C Y N 31
1Z0 C61 C Y N 32
1Z0 C62 C Y N 33
1Z0 C63 C Y N 34
1Z0 C64 C Y N 35
1Z0 C65 C Y N 36
1Z0 C66 C Y N 37
1Z0 C11 C N N 38
1Z0 O11 O N N 39
1Z0 O2 O N N 40
1Z0 O3 O N N 41
1Z0 C4 C N N 42
1Z0 H H N N 43
1Z0 H3 H N N 44
1Z0 "H'C1" H N N 45
1Z0 "H'C2" H N N 46
1Z0 "H2'" H N N 47
1Z0 "H6'" H N N 48
1Z0 "H3'" H N N 49
1Z0 "H5'" H N N 50
1Z0 "H4'" H N N 51
1Z0 H1C1 H N N 52
1Z0 H1C2 H N N 53
1Z0 H1C3 H N N 54
1Z0 HA H N N 55
1Z0 HB2 H N N 56
1Z0 HB3 H N N 57
1Z0 HG2 H N N 58
1Z0 HG3 H N N 59
1Z0 HD2 H N N 60
1Z0 HD3 H N N 61
1Z0 H1 H N N 62
1Z0 HA1 H N N 63
1Z0 HB1 H N N 64
1Z0 HB21 H N N 65
1Z0 HG1 H N N 66
1Z0 HG21 H N N 67
1Z0 HD1 H N N 68
1Z0 HD21 H N N 69
1Z0 HE H N N 70
1Z0 HH11 H N N 71
1Z0 HH21 H N N 72
1Z0 HH22 H N N 73
1Z0 H63 H N N 74
1Z0 H65 H N N 75
1Z0 H66 H N N 76
1Z0 HO21 H N N 77
ALA N N N N 78
ALA CA C N S 79
ALA C C N N 80
ALA O O N N 81
ALA CB C N N 82
ALA OXT O N N 83
ALA H H N N 84
ALA H2 H N N 85
ALA HA H N N 86
ALA HB1 H N N 87
ALA HB2 H N N 88
ALA HB3 H N N 89
ALA HXT H N N 90
ARG N N N N 91
ARG CA C N S 92
ARG C C N N 93
ARG O O N N 94
ARG CB C N N 95
ARG CG C N N 96
ARG CD C N N 97
ARG NE N N N 98
ARG CZ C N N 99
ARG NH1 N N N 100
ARG NH2 N N N 101
ARG OXT O N N 102
ARG H H N N 103
ARG H2 H N N 104
ARG HA H N N 105
ARG HB2 H N N 106
ARG HB3 H N N 107
ARG HG2 H N N 108
ARG HG3 H N N 109
ARG HD2 H N N 110
ARG HD3 H N N 111
ARG HE H N N 112
ARG HH11 H N N 113
ARG HH12 H N N 114
ARG HH21 H N N 115
ARG HH22 H N N 116
ARG HXT H N N 117
ASN N N N N 118
ASN CA C N S 119
ASN C C N N 120
ASN O O N N 121
ASN CB C N N 122
ASN CG C N N 123
ASN OD1 O N N 124
ASN ND2 N N N 125
ASN OXT O N N 126
ASN H H N N 127
ASN H2 H N N 128
ASN HA H N N 129
ASN HB2 H N N 130
ASN HB3 H N N 131
ASN HD21 H N N 132
ASN HD22 H N N 133
ASN HXT H N N 134
ASP N N N N 135
ASP CA C N S 136
ASP C C N N 137
ASP O O N N 138
ASP CB C N N 139
ASP CG C N N 140
ASP OD1 O N N 141
ASP OD2 O N N 142
ASP OXT O N N 143
ASP H H N N 144
ASP H2 H N N 145
ASP HA H N N 146
ASP HB2 H N N 147
ASP HB3 H N N 148
ASP HD2 H N N 149
ASP HXT H N N 150
CYS N N N N 151
CYS CA C N R 152
CYS C C N N 153
CYS O O N N 154
CYS CB C N N 155
CYS SG S N N 156
CYS OXT O N N 157
CYS H H N N 158
CYS H2 H N N 159
CYS HA H N N 160
CYS HB2 H N N 161
CYS HB3 H N N 162
CYS HG H N N 163
CYS HXT H N N 164
GLN N N N N 165
GLN CA C N S 166
GLN C C N N 167
GLN O O N N 168
GLN CB C N N 169
GLN CG C N N 170
GLN CD C N N 171
GLN OE1 O N N 172
GLN NE2 N N N 173
GLN OXT O N N 174
GLN H H N N 175
GLN H2 H N N 176
GLN HA H N N 177
GLN HB2 H N N 178
GLN HB3 H N N 179
GLN HG2 H N N 180
GLN HG3 H N N 181
GLN HE21 H N N 182
GLN HE22 H N N 183
GLN HXT H N N 184
GLU N N N N 185
GLU CA C N S 186
GLU C C N N 187
GLU O O N N 188
GLU CB C N N 189
GLU CG C N N 190
GLU CD C N N 191
GLU OE1 O N N 192
GLU OE2 O N N 193
GLU OXT O N N 194
GLU H H N N 195
GLU H2 H N N 196
GLU HA H N N 197
GLU HB2 H N N 198
GLU HB3 H N N 199
GLU HG2 H N N 200
GLU HG3 H N N 201
GLU HE2 H N N 202
GLU HXT H N N 203
GLY N N N N 204
GLY CA C N N 205
GLY C C N N 206
GLY O O N N 207
GLY OXT O N N 208
GLY H H N N 209
GLY H2 H N N 210
GLY HA2 H N N 211
GLY HA3 H N N 212
GLY HXT H N N 213
HIS N N N N 214
HIS CA C N S 215
HIS C C N N 216
HIS O O N N 217
HIS CB C N N 218
HIS CG C Y N 219
HIS ND1 N Y N 220
HIS CD2 C Y N 221
HIS CE1 C Y N 222
HIS NE2 N Y N 223
HIS OXT O N N 224
HIS H H N N 225
HIS H2 H N N 226
HIS HA H N N 227
HIS HB2 H N N 228
HIS HB3 H N N 229
HIS HD1 H N N 230
HIS HD2 H N N 231
HIS HE1 H N N 232
HIS HE2 H N N 233
HIS HXT H N N 234
HOH O O N N 235
HOH H1 H N N 236
HOH H2 H N N 237
ILE N N N N 238
ILE CA C N S 239
ILE C C N N 240
ILE O O N N 241
ILE CB C N S 242
ILE CG1 C N N 243
ILE CG2 C N N 244
ILE CD1 C N N 245
ILE OXT O N N 246
ILE H H N N 247
ILE H2 H N N 248
ILE HA H N N 249
ILE HB H N N 250
ILE HG12 H N N 251
ILE HG13 H N N 252
ILE HG21 H N N 253
ILE HG22 H N N 254
ILE HG23 H N N 255
ILE HD11 H N N 256
ILE HD12 H N N 257
ILE HD13 H N N 258
ILE HXT H N N 259
LEU N N N N 260
LEU CA C N S 261
LEU C C N N 262
LEU O O N N 263
LEU CB C N N 264
LEU CG C N N 265
LEU CD1 C N N 266
LEU CD2 C N N 267
LEU OXT O N N 268
LEU H H N N 269
LEU H2 H N N 270
LEU HA H N N 271
LEU HB2 H N N 272
LEU HB3 H N N 273
LEU HG H N N 274
LEU HD11 H N N 275
LEU HD12 H N N 276
LEU HD13 H N N 277
LEU HD21 H N N 278
LEU HD22 H N N 279
LEU HD23 H N N 280
LEU HXT H N N 281
LYS N N N N 282
LYS CA C N S 283
LYS C C N N 284
LYS O O N N 285
LYS CB C N N 286
LYS CG C N N 287
LYS CD C N N 288
LYS CE C N N 289
LYS NZ N N N 290
LYS OXT O N N 291
LYS H H N N 292
LYS H2 H N N 293
LYS HA H N N 294
LYS HB2 H N N 295
LYS HB3 H N N 296
LYS HG2 H N N 297
LYS HG3 H N N 298
LYS HD2 H N N 299
LYS HD3 H N N 300
LYS HE2 H N N 301
LYS HE3 H N N 302
LYS HZ1 H N N 303
LYS HZ2 H N N 304
LYS HZ3 H N N 305
LYS HXT H N N 306
MET N N N N 307
MET CA C N S 308
MET C C N N 309
MET O O N N 310
MET CB C N N 311
MET CG C N N 312
MET SD S N N 313
MET CE C N N 314
MET OXT O N N 315
MET H H N N 316
MET H2 H N N 317
MET HA H N N 318
MET HB2 H N N 319
MET HB3 H N N 320
MET HG2 H N N 321
MET HG3 H N N 322
MET HE1 H N N 323
MET HE2 H N N 324
MET HE3 H N N 325
MET HXT H N N 326
NA NA NA N N 327
NAG C1 C N R 328
NAG C2 C N R 329
NAG C3 C N R 330
NAG C4 C N S 331
NAG C5 C N R 332
NAG C6 C N N 333
NAG C7 C N N 334
NAG C8 C N N 335
NAG N2 N N N 336
NAG O1 O N N 337
NAG O3 O N N 338
NAG O4 O N N 339
NAG O5 O N N 340
NAG O6 O N N 341
NAG O7 O N N 342
NAG H1 H N N 343
NAG H2 H N N 344
NAG H3 H N N 345
NAG H4 H N N 346
NAG H5 H N N 347
NAG H61 H N N 348
NAG H62 H N N 349
NAG H81 H N N 350
NAG H82 H N N 351
NAG H83 H N N 352
NAG HN2 H N N 353
NAG HO1 H N N 354
NAG HO3 H N N 355
NAG HO4 H N N 356
NAG HO6 H N N 357
PHE N N N N 358
PHE CA C N S 359
PHE C C N N 360
PHE O O N N 361
PHE CB C N N 362
PHE CG C Y N 363
PHE CD1 C Y N 364
PHE CD2 C Y N 365
PHE CE1 C Y N 366
PHE CE2 C Y N 367
PHE CZ C Y N 368
PHE OXT O N N 369
PHE H H N N 370
PHE H2 H N N 371
PHE HA H N N 372
PHE HB2 H N N 373
PHE HB3 H N N 374
PHE HD1 H N N 375
PHE HD2 H N N 376
PHE HE1 H N N 377
PHE HE2 H N N 378
PHE HZ H N N 379
PHE HXT H N N 380
PRO N N N N 381
PRO CA C N S 382
PRO C C N N 383
PRO O O N N 384
PRO CB C N N 385
PRO CG C N N 386
PRO CD C N N 387
PRO OXT O N N 388
PRO H H N N 389
PRO HA H N N 390
PRO HB2 H N N 391
PRO HB3 H N N 392
PRO HG2 H N N 393
PRO HG3 H N N 394
PRO HD2 H N N 395
PRO HD3 H N N 396
PRO HXT H N N 397
SER N N N N 398
SER CA C N S 399
SER C C N N 400
SER O O N N 401
SER CB C N N 402
SER OG O N N 403
SER OXT O N N 404
SER H H N N 405
SER H2 H N N 406
SER HA H N N 407
SER HB2 H N N 408
SER HB3 H N N 409
SER HG H N N 410
SER HXT H N N 411
THR N N N N 412
THR CA C N S 413
THR C C N N 414
THR O O N N 415
THR CB C N R 416
THR OG1 O N N 417
THR CG2 C N N 418
THR OXT O N N 419
THR H H N N 420
THR H2 H N N 421
THR HA H N N 422
THR HB H N N 423
THR HG1 H N N 424
THR HG21 H N N 425
THR HG22 H N N 426
THR HG23 H N N 427
THR HXT H N N 428
TRP N N N N 429
TRP CA C N S 430
TRP C C N N 431
TRP O O N N 432
TRP CB C N N 433
TRP CG C Y N 434
TRP CD1 C Y N 435
TRP CD2 C Y N 436
TRP NE1 N Y N 437
TRP CE2 C Y N 438
TRP CE3 C Y N 439
TRP CZ2 C Y N 440
TRP CZ3 C Y N 441
TRP CH2 C Y N 442
TRP OXT O N N 443
TRP H H N N 444
TRP H2 H N N 445
TRP HA H N N 446
TRP HB2 H N N 447
TRP HB3 H N N 448
TRP HD1 H N N 449
TRP HE1 H N N 450
TRP HE3 H N N 451
TRP HZ2 H N N 452
TRP HZ3 H N N 453
TRP HH2 H N N 454
TRP HXT H N N 455
TYR N N N N 456
TYR CA C N S 457
TYR C C N N 458
TYR O O N N 459
TYR CB C N N 460
TYR CG C Y N 461
TYR CD1 C Y N 462
TYR CD2 C Y N 463
TYR CE1 C Y N 464
TYR CE2 C Y N 465
TYR CZ C Y N 466
TYR OH O N N 467
TYR OXT O N N 468
TYR H H N N 469
TYR H2 H N N 470
TYR HA H N N 471
TYR HB2 H N N 472
TYR HB3 H N N 473
TYR HD1 H N N 474
TYR HD2 H N N 475
TYR HE1 H N N 476
TYR HE2 H N N 477
TYR HH H N N 478
TYR HXT H N N 479
TYS N N N N 480
TYS CA C N S 481
TYS CB C N N 482
TYS CG C Y N 483
TYS CD1 C Y N 484
TYS CD2 C Y N 485
TYS CE1 C Y N 486
TYS CE2 C Y N 487
TYS CZ C Y N 488
TYS OH O N N 489
TYS S S N N 490
TYS O1 O N N 491
TYS O2 O N N 492
TYS O3 O N N 493
TYS C C N N 494
TYS O O N N 495
TYS OXT O N N 496
TYS H H N N 497
TYS H2 H N N 498
TYS HA H N N 499
TYS HB2 H N N 500
TYS HB3 H N N 501
TYS HD1 H N N 502
TYS HD2 H N N 503
TYS HE1 H N N 504
TYS HE2 H N N 505
TYS HO3 H N N 506
TYS HXT H N N 507
VAL N N N N 508
VAL CA C N S 509
VAL C C N N 510
VAL O O N N 511
VAL CB C N N 512
VAL CG1 C N N 513
VAL CG2 C N N 514
VAL OXT O N N 515
VAL H H N N 516
VAL H2 H N N 517
VAL HA H N N 518
VAL HB H N N 519
VAL HG11 H N N 520
VAL HG12 H N N 521
VAL HG13 H N N 522
VAL HG21 H N N 523
VAL HG22 H N N 524
VAL HG23 H N N 525
VAL HXT H N N 526
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1Z0 C1 N sing N N 1
1Z0 C1 H1C1 sing N N 2
1Z0 C1 H1C2 sing N N 3
1Z0 C1 H1C3 sing N N 4
1Z0 N C3 sing N N 5
1Z0 N H sing N N 6
1Z0 C3 C sing N N 7
1Z0 C3 "C'" sing N N 8
1Z0 C3 H3 sing N N 9
1Z0 C O doub N N 10
1Z0 "C'" "C1'" sing N N 11
1Z0 "C'" "H'C1" sing N N 12
1Z0 "C'" "H'C2" sing N N 13
1Z0 "C1'" "C2'" doub Y N 14
1Z0 "C1'" "C6'" sing Y N 15
1Z0 "C2'" "C3'" sing Y N 16
1Z0 "C2'" "H2'" sing N N 17
1Z0 "C3'" "C4'" doub Y N 18
1Z0 "C3'" "H3'" sing N N 19
1Z0 "C4'" "C5'" sing Y N 20
1Z0 "C4'" "H4'" sing N N 21
1Z0 "C5'" "C6'" doub Y N 22
1Z0 "C5'" "H5'" sing N N 23
1Z0 "C6'" "H6'" sing N N 24
1Z0 N1 CA sing N N 25
1Z0 N1 CD sing N N 26
1Z0 CA C2 sing N N 27
1Z0 CA CB sing N N 28
1Z0 CA HA sing N N 29
1Z0 C2 O1 doub N N 30
1Z0 CB CG sing N N 31
1Z0 CB HB2 sing N N 32
1Z0 CB HB3 sing N N 33
1Z0 CG CD sing N N 34
1Z0 CG HG2 sing N N 35
1Z0 CG HG3 sing N N 36
1Z0 CD HD2 sing N N 37
1Z0 CD HD3 sing N N 38
1Z0 N2 CA1 sing N N 39
1Z0 N2 H1 sing N N 40
1Z0 CA1 CB1 sing N N 41
1Z0 CA1 C4 sing N N 42
1Z0 CA1 HA1 sing N N 43
1Z0 CB1 CG1 sing N N 44
1Z0 CB1 HB1 sing N N 45
1Z0 CB1 HB21 sing N N 46
1Z0 CG1 CD1 sing N N 47
1Z0 CG1 HG1 sing N N 48
1Z0 CG1 HG21 sing N N 49
1Z0 CD1 NE sing N N 50
1Z0 CD1 HD1 sing N N 51
1Z0 CD1 HD21 sing N N 52
1Z0 NE CZ sing N N 53
1Z0 NE HE sing N N 54
1Z0 CZ NH1 doub N N 55
1Z0 CZ NH2 sing N N 56
1Z0 NH1 HH11 sing N N 57
1Z0 NH2 HH21 sing N N 58
1Z0 NH2 HH22 sing N N 59
1Z0 N5 C5 doub Y N 60
1Z0 N5 C61 sing Y N 61
1Z0 S5 C5 sing Y N 62
1Z0 S5 C62 sing Y N 63
1Z0 C5 C4 sing N N 64
1Z0 C61 C62 doub Y N 65
1Z0 C61 C66 sing Y N 66
1Z0 C62 C63 sing Y N 67
1Z0 C63 C64 doub Y N 68
1Z0 C63 H63 sing N N 69
1Z0 C64 C65 sing Y N 70
1Z0 C64 C11 sing N N 71
1Z0 C65 C66 doub Y N 72
1Z0 C65 H65 sing N N 73
1Z0 C66 H66 sing N N 74
1Z0 C11 O11 doub N N 75
1Z0 C11 O2 sing N N 76
1Z0 O2 HO21 sing N N 77
1Z0 O3 C4 doub N N 78
1Z0 C N1 sing N N 79
1Z0 C2 N2 sing N N 80
ALA N CA sing N N 81
ALA N H sing N N 82
ALA N H2 sing N N 83
ALA CA C sing N N 84
ALA CA CB sing N N 85
ALA CA HA sing N N 86
ALA C O doub N N 87
ALA C OXT sing N N 88
ALA CB HB1 sing N N 89
ALA CB HB2 sing N N 90
ALA CB HB3 sing N N 91
ALA OXT HXT sing N N 92
ARG N CA sing N N 93
ARG N H sing N N 94
ARG N H2 sing N N 95
ARG CA C sing N N 96
ARG CA CB sing N N 97
ARG CA HA sing N N 98
ARG C O doub N N 99
ARG C OXT sing N N 100
ARG CB CG sing N N 101
ARG CB HB2 sing N N 102
ARG CB HB3 sing N N 103
ARG CG CD sing N N 104
ARG CG HG2 sing N N 105
ARG CG HG3 sing N N 106
ARG CD NE sing N N 107
ARG CD HD2 sing N N 108
ARG CD HD3 sing N N 109
ARG NE CZ sing N N 110
ARG NE HE sing N N 111
ARG CZ NH1 sing N N 112
ARG CZ NH2 doub N N 113
ARG NH1 HH11 sing N N 114
ARG NH1 HH12 sing N N 115
ARG NH2 HH21 sing N N 116
ARG NH2 HH22 sing N N 117
ARG OXT HXT sing N N 118
ASN N CA sing N N 119
ASN N H sing N N 120
ASN N H2 sing N N 121
ASN CA C sing N N 122
ASN CA CB sing N N 123
ASN CA HA sing N N 124
ASN C O doub N N 125
ASN C OXT sing N N 126
ASN CB CG sing N N 127
ASN CB HB2 sing N N 128
ASN CB HB3 sing N N 129
ASN CG OD1 doub N N 130
ASN CG ND2 sing N N 131
ASN ND2 HD21 sing N N 132
ASN ND2 HD22 sing N N 133
ASN OXT HXT sing N N 134
ASP N CA sing N N 135
ASP N H sing N N 136
ASP N H2 sing N N 137
ASP CA C sing N N 138
ASP CA CB sing N N 139
ASP CA HA sing N N 140
ASP C O doub N N 141
ASP C OXT sing N N 142
ASP CB CG sing N N 143
ASP CB HB2 sing N N 144
ASP CB HB3 sing N N 145
ASP CG OD1 doub N N 146
ASP CG OD2 sing N N 147
ASP OD2 HD2 sing N N 148
ASP OXT HXT sing N N 149
CYS N CA sing N N 150
CYS N H sing N N 151
CYS N H2 sing N N 152
CYS CA C sing N N 153
CYS CA CB sing N N 154
CYS CA HA sing N N 155
CYS C O doub N N 156
CYS C OXT sing N N 157
CYS CB SG sing N N 158
CYS CB HB2 sing N N 159
CYS CB HB3 sing N N 160
CYS SG HG sing N N 161
CYS OXT HXT sing N N 162
GLN N CA sing N N 163
GLN N H sing N N 164
GLN N H2 sing N N 165
GLN CA C sing N N 166
GLN CA CB sing N N 167
GLN CA HA sing N N 168
GLN C O doub N N 169
GLN C OXT sing N N 170
GLN CB CG sing N N 171
GLN CB HB2 sing N N 172
GLN CB HB3 sing N N 173
GLN CG CD sing N N 174
GLN CG HG2 sing N N 175
GLN CG HG3 sing N N 176
GLN CD OE1 doub N N 177
GLN CD NE2 sing N N 178
GLN NE2 HE21 sing N N 179
GLN NE2 HE22 sing N N 180
GLN OXT HXT sing N N 181
GLU N CA sing N N 182
GLU N H sing N N 183
GLU N H2 sing N N 184
GLU CA C sing N N 185
GLU CA CB sing N N 186
GLU CA HA sing N N 187
GLU C O doub N N 188
GLU C OXT sing N N 189
GLU CB CG sing N N 190
GLU CB HB2 sing N N 191
GLU CB HB3 sing N N 192
GLU CG CD sing N N 193
GLU CG HG2 sing N N 194
GLU CG HG3 sing N N 195
GLU CD OE1 doub N N 196
GLU CD OE2 sing N N 197
GLU OE2 HE2 sing N N 198
GLU OXT HXT sing N N 199
GLY N CA sing N N 200
GLY N H sing N N 201
GLY N H2 sing N N 202
GLY CA C sing N N 203
GLY CA HA2 sing N N 204
GLY CA HA3 sing N N 205
GLY C O doub N N 206
GLY C OXT sing N N 207
GLY OXT HXT sing N N 208
HIS N CA sing N N 209
HIS N H sing N N 210
HIS N H2 sing N N 211
HIS CA C sing N N 212
HIS CA CB sing N N 213
HIS CA HA sing N N 214
HIS C O doub N N 215
HIS C OXT sing N N 216
HIS CB CG sing N N 217
HIS CB HB2 sing N N 218
HIS CB HB3 sing N N 219
HIS CG ND1 sing Y N 220
HIS CG CD2 doub Y N 221
HIS ND1 CE1 doub Y N 222
HIS ND1 HD1 sing N N 223
HIS CD2 NE2 sing Y N 224
HIS CD2 HD2 sing N N 225
HIS CE1 NE2 sing Y N 226
HIS CE1 HE1 sing N N 227
HIS NE2 HE2 sing N N 228
HIS OXT HXT sing N N 229
HOH O H1 sing N N 230
HOH O H2 sing N N 231
ILE N CA sing N N 232
ILE N H sing N N 233
ILE N H2 sing N N 234
ILE CA C sing N N 235
ILE CA CB sing N N 236
ILE CA HA sing N N 237
ILE C O doub N N 238
ILE C OXT sing N N 239
ILE CB CG1 sing N N 240
ILE CB CG2 sing N N 241
ILE CB HB sing N N 242
ILE CG1 CD1 sing N N 243
ILE CG1 HG12 sing N N 244
ILE CG1 HG13 sing N N 245
ILE CG2 HG21 sing N N 246
ILE CG2 HG22 sing N N 247
ILE CG2 HG23 sing N N 248
ILE CD1 HD11 sing N N 249
ILE CD1 HD12 sing N N 250
ILE CD1 HD13 sing N N 251
ILE OXT HXT sing N N 252
LEU N CA sing N N 253
LEU N H sing N N 254
LEU N H2 sing N N 255
LEU CA C sing N N 256
LEU CA CB sing N N 257
LEU CA HA sing N N 258
LEU C O doub N N 259
LEU C OXT sing N N 260
LEU CB CG sing N N 261
LEU CB HB2 sing N N 262
LEU CB HB3 sing N N 263
LEU CG CD1 sing N N 264
LEU CG CD2 sing N N 265
LEU CG HG sing N N 266
LEU CD1 HD11 sing N N 267
LEU CD1 HD12 sing N N 268
LEU CD1 HD13 sing N N 269
LEU CD2 HD21 sing N N 270
LEU CD2 HD22 sing N N 271
LEU CD2 HD23 sing N N 272
LEU OXT HXT sing N N 273
LYS N CA sing N N 274
LYS N H sing N N 275
LYS N H2 sing N N 276
LYS CA C sing N N 277
LYS CA CB sing N N 278
LYS CA HA sing N N 279
LYS C O doub N N 280
LYS C OXT sing N N 281
LYS CB CG sing N N 282
LYS CB HB2 sing N N 283
LYS CB HB3 sing N N 284
LYS CG CD sing N N 285
LYS CG HG2 sing N N 286
LYS CG HG3 sing N N 287
LYS CD CE sing N N 288
LYS CD HD2 sing N N 289
LYS CD HD3 sing N N 290
LYS CE NZ sing N N 291
LYS CE HE2 sing N N 292
LYS CE HE3 sing N N 293
LYS NZ HZ1 sing N N 294
LYS NZ HZ2 sing N N 295
LYS NZ HZ3 sing N N 296
LYS OXT HXT sing N N 297
MET N CA sing N N 298
MET N H sing N N 299
MET N H2 sing N N 300
MET CA C sing N N 301
MET CA CB sing N N 302
MET CA HA sing N N 303
MET C O doub N N 304
MET C OXT sing N N 305
MET CB CG sing N N 306
MET CB HB2 sing N N 307
MET CB HB3 sing N N 308
MET CG SD sing N N 309
MET CG HG2 sing N N 310
MET CG HG3 sing N N 311
MET SD CE sing N N 312
MET CE HE1 sing N N 313
MET CE HE2 sing N N 314
MET CE HE3 sing N N 315
MET OXT HXT sing N N 316
NAG C1 C2 sing N N 317
NAG C1 O1 sing N N 318
NAG C1 O5 sing N N 319
NAG C1 H1 sing N N 320
NAG C2 C3 sing N N 321
NAG C2 N2 sing N N 322
NAG C2 H2 sing N N 323
NAG C3 C4 sing N N 324
NAG C3 O3 sing N N 325
NAG C3 H3 sing N N 326
NAG C4 C5 sing N N 327
NAG C4 O4 sing N N 328
NAG C4 H4 sing N N 329
NAG C5 C6 sing N N 330
NAG C5 O5 sing N N 331
NAG C5 H5 sing N N 332
NAG C6 O6 sing N N 333
NAG C6 H61 sing N N 334
NAG C6 H62 sing N N 335
NAG C7 C8 sing N N 336
NAG C7 N2 sing N N 337
NAG C7 O7 doub N N 338
NAG C8 H81 sing N N 339
NAG C8 H82 sing N N 340
NAG C8 H83 sing N N 341
NAG N2 HN2 sing N N 342
NAG O1 HO1 sing N N 343
NAG O3 HO3 sing N N 344
NAG O4 HO4 sing N N 345
NAG O6 HO6 sing N N 346
PHE N CA sing N N 347
PHE N H sing N N 348
PHE N H2 sing N N 349
PHE CA C sing N N 350
PHE CA CB sing N N 351
PHE CA HA sing N N 352
PHE C O doub N N 353
PHE C OXT sing N N 354
PHE CB CG sing N N 355
PHE CB HB2 sing N N 356
PHE CB HB3 sing N N 357
PHE CG CD1 doub Y N 358
PHE CG CD2 sing Y N 359
PHE CD1 CE1 sing Y N 360
PHE CD1 HD1 sing N N 361
PHE CD2 CE2 doub Y N 362
PHE CD2 HD2 sing N N 363
PHE CE1 CZ doub Y N 364
PHE CE1 HE1 sing N N 365
PHE CE2 CZ sing Y N 366
PHE CE2 HE2 sing N N 367
PHE CZ HZ sing N N 368
PHE OXT HXT sing N N 369
PRO N CA sing N N 370
PRO N CD sing N N 371
PRO N H sing N N 372
PRO CA C sing N N 373
PRO CA CB sing N N 374
PRO CA HA sing N N 375
PRO C O doub N N 376
PRO C OXT sing N N 377
PRO CB CG sing N N 378
PRO CB HB2 sing N N 379
PRO CB HB3 sing N N 380
PRO CG CD sing N N 381
PRO CG HG2 sing N N 382
PRO CG HG3 sing N N 383
PRO CD HD2 sing N N 384
PRO CD HD3 sing N N 385
PRO OXT HXT sing N N 386
SER N CA sing N N 387
SER N H sing N N 388
SER N H2 sing N N 389
SER CA C sing N N 390
SER CA CB sing N N 391
SER CA HA sing N N 392
SER C O doub N N 393
SER C OXT sing N N 394
SER CB OG sing N N 395
SER CB HB2 sing N N 396
SER CB HB3 sing N N 397
SER OG HG sing N N 398
SER OXT HXT sing N N 399
THR N CA sing N N 400
THR N H sing N N 401
THR N H2 sing N N 402
THR CA C sing N N 403
THR CA CB sing N N 404
THR CA HA sing N N 405
THR C O doub N N 406
THR C OXT sing N N 407
THR CB OG1 sing N N 408
THR CB CG2 sing N N 409
THR CB HB sing N N 410
THR OG1 HG1 sing N N 411
THR CG2 HG21 sing N N 412
THR CG2 HG22 sing N N 413
THR CG2 HG23 sing N N 414
THR OXT HXT sing N N 415
TRP N CA sing N N 416
TRP N H sing N N 417
TRP N H2 sing N N 418
TRP CA C sing N N 419
TRP CA CB sing N N 420
TRP CA HA sing N N 421
TRP C O doub N N 422
TRP C OXT sing N N 423
TRP CB CG sing N N 424
TRP CB HB2 sing N N 425
TRP CB HB3 sing N N 426
TRP CG CD1 doub Y N 427
TRP CG CD2 sing Y N 428
TRP CD1 NE1 sing Y N 429
TRP CD1 HD1 sing N N 430
TRP CD2 CE2 doub Y N 431
TRP CD2 CE3 sing Y N 432
TRP NE1 CE2 sing Y N 433
TRP NE1 HE1 sing N N 434
TRP CE2 CZ2 sing Y N 435
TRP CE3 CZ3 doub Y N 436
TRP CE3 HE3 sing N N 437
TRP CZ2 CH2 doub Y N 438
TRP CZ2 HZ2 sing N N 439
TRP CZ3 CH2 sing Y N 440
TRP CZ3 HZ3 sing N N 441
TRP CH2 HH2 sing N N 442
TRP OXT HXT sing N N 443
TYR N CA sing N N 444
TYR N H sing N N 445
TYR N H2 sing N N 446
TYR CA C sing N N 447
TYR CA CB sing N N 448
TYR CA HA sing N N 449
TYR C O doub N N 450
TYR C OXT sing N N 451
TYR CB CG sing N N 452
TYR CB HB2 sing N N 453
TYR CB HB3 sing N N 454
TYR CG CD1 doub Y N 455
TYR CG CD2 sing Y N 456
TYR CD1 CE1 sing Y N 457
TYR CD1 HD1 sing N N 458
TYR CD2 CE2 doub Y N 459
TYR CD2 HD2 sing N N 460
TYR CE1 CZ doub Y N 461
TYR CE1 HE1 sing N N 462
TYR CE2 CZ sing Y N 463
TYR CE2 HE2 sing N N 464
TYR CZ OH sing N N 465
TYR OH HH sing N N 466
TYR OXT HXT sing N N 467
TYS N CA sing N N 468
TYS N H sing N N 469
TYS N H2 sing N N 470
TYS CA CB sing N N 471
TYS CA C sing N N 472
TYS CA HA sing N N 473
TYS CB CG sing N N 474
TYS CB HB2 sing N N 475
TYS CB HB3 sing N N 476
TYS CG CD1 doub Y N 477
TYS CG CD2 sing Y N 478
TYS CD1 CE1 sing Y N 479
TYS CD1 HD1 sing N N 480
TYS CD2 CE2 doub Y N 481
TYS CD2 HD2 sing N N 482
TYS CE1 CZ doub Y N 483
TYS CE1 HE1 sing N N 484
TYS CE2 CZ sing Y N 485
TYS CE2 HE2 sing N N 486
TYS CZ OH sing N N 487
TYS OH S sing N N 488
TYS S O1 doub N N 489
TYS S O2 doub N N 490
TYS S O3 sing N N 491
TYS O3 HO3 sing N N 492
TYS C O doub N N 493
TYS C OXT sing N N 494
TYS OXT HXT sing N N 495
VAL N CA sing N N 496
VAL N H sing N N 497
VAL N H2 sing N N 498
VAL CA C sing N N 499
VAL CA CB sing N N 500
VAL CA HA sing N N 501
VAL C O doub N N 502
VAL C OXT sing N N 503
VAL CB CG1 sing N N 504
VAL CB CG2 sing N N 505
VAL CB HB sing N N 506
VAL CG1 HG11 sing N N 507
VAL CG1 HG12 sing N N 508
VAL CG1 HG13 sing N N 509
VAL CG2 HG21 sing N N 510
VAL CG2 HG22 sing N N 511
VAL CG2 HG23 sing N N 512
VAL OXT HXT sing N N 513
#
_atom_sites.entry_id 1DOJ
_atom_sites.fract_transf_matrix[1][1] 0.015878
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.008509
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.020838
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
NA
O
S
#
loop_