HEADER HYDROLASE/HYDROLASE INHIBITOR 27-DEC-99 1DPJ TITLE THE STRUCTURE OF PROTEINASE A COMPLEXED WITH IA3 PEPTIDE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEINASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTATE PROTEASE; COMPND 5 EC: 3.4.23.25; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEINASE INHIBITOR IA3 PEPTIDE; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: IA3; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 7 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 8 ORGANISM_TAXID: 4932; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEINASE A, IA3 PEPTIDE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.LI,H.L.PHYLIP,W.E.LEES,J.R.WINTHER,B.M.DUNN,A.WLODAWER,J.KAY, AUTHOR 2 A.GUSCHINA REVDAT 6 07-JUL-21 1DPJ 1 REMARK HETSYN REVDAT 5 29-JUL-20 1DPJ 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 13-JUL-11 1DPJ 1 VERSN REVDAT 3 24-FEB-09 1DPJ 1 VERSN REVDAT 2 01-APR-03 1DPJ 1 JRNL REVDAT 1 03-MAY-00 1DPJ 0 JRNL AUTH M.LI,L.H.PHYLIP,W.E.LEES,J.R.WINTHER,B.M.DUNN,A.WLODAWER, JRNL AUTH 2 J.KAY,A.GUSTCHINA JRNL TITL THE ASPARTIC PROTEINASE FROM SACCHAROMYCES CEREVISIAE FOLDS JRNL TITL 2 ITS OWN INHIBITOR INTO A HELIX. JRNL REF NAT.STRUCT.BIOL. V. 7 113 2000 JRNL REFN ISSN 1072-8368 JRNL PMID 10655612 JRNL DOI 10.1038/72378 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.F.AGUILAR,N.B.CRONIN,M.BADASSO,T.DREYER,M.P.NEWMAN, REMARK 1 AUTH 2 J.B.COOPER,D.J.HOOVER,S.P.WOOD,M.S.JOHNSON,T.L.BLUNDELL REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE AT 2.4 A RESOLUTION OF REMARK 1 TITL 2 GLYCOSYLATED PROTEINASE A FROM THE LYSOSOME-LIKE VACUOLE OF REMARK 1 TITL 3 SACCHAROMYCES CEREVISIAE REMARK 1 REF J.MOL.BIOL. V. 267 899 1997 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1996.0880 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 48773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2437 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2742 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 139 REMARK 3 SOLVENT ATOMS : 372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DPJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-00. REMARK 100 THE DEPOSITION ID IS D_1000010267. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53659 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1500, AMMOUNIA SULFATE, PH 5.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.72000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.36000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.72000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.36000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.72000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 17.36000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.72000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 17.36000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 331.96486 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 B 804 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1147 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1148 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 2 REMARK 465 LYS B 32 REMARK 465 MET B 33 REMARK 465 ALA B 34 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 241 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 241 CZ3 CH2 REMARK 470 LYS B 31 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 70 CD OE1 OE2 REMARK 480 LYS A 132 CE NZ REMARK 480 GLU A 160 CD OE1 OE2 REMARK 480 LYS A 174 NZ REMARK 480 LYS A 176 CE NZ REMARK 480 GLU A 205 CG CD OE1 OE2 REMARK 480 GLU A 207 CG CD OE1 OE2 REMARK 480 SER A 208 OG REMARK 480 GLU A 234 CG REMARK 480 LYS A 238 CD CE NZ REMARK 480 ASP A 248 CB CG OD1 OD2 REMARK 480 ASN A 250 ND2 REMARK 480 ASN A 254 OD1 ND2 REMARK 480 ILE A 259 CD1 REMARK 480 GLU A 293 CD OE1 OE2 REMARK 480 LYS A 324 CD REMARK 480 LYS B 7 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 20 O HOH B 828 2.10 REMARK 500 O HOH B 818 O HOH B 828 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1038 O HOH A 1038 11556 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 67 -63.98 -144.70 REMARK 500 ALA A 188 -81.79 -166.41 REMARK 500 ASN A 250 4.18 -64.09 REMARK 500 ASN A 263 26.01 49.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 800 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 MAN C 9 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DP5 RELATED DB: PDB REMARK 900 PROTEINASE A COMPLEXED WITH FULL LENGTH IA3 AT 2.2 A RESOLUTION REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RESIDUE NUMBERS FOR CHAIN A FOLLOW THE REMARK 999 RESIDUE NUMBERS IN PDB ENTRY 2JXR. REMARK 999 THE SEQUENCE FOR CHAIN B IS TRUNCATED. DBREF 1DPJ A 0 326 UNP P07267 CARP_YEAST 77 405 DBREF 1DPJ B 2 34 UNP P01094 IPA3_YEAST 2 34 SEQRES 1 A 329 GLY GLY HIS ASP VAL PRO LEU THR ASN TYR LEU ASN ALA SEQRES 2 A 329 GLN TYR TYR THR ASP ILE THR LEU GLY THR PRO PRO GLN SEQRES 3 A 329 ASN PHE LYS VAL ILE LEU ASP THR GLY SER SER ASN LEU SEQRES 4 A 329 TRP VAL PRO SER ASN GLU CYS GLY SER LEU ALA CYS PHE SEQRES 5 A 329 LEU HIS SER LYS TYR ASP HIS GLU ALA SER SER SER TYR SEQRES 6 A 329 LYS ALA ASN GLY THR GLU PHE ALA ILE GLN TYR GLY THR SEQRES 7 A 329 GLY SER LEU GLU GLY TYR ILE SER GLN ASP THR LEU SER SEQRES 8 A 329 ILE GLY ASP LEU THR ILE PRO LYS GLN ASP PHE ALA GLU SEQRES 9 A 329 ALA THR SER GLU PRO GLY LEU THR PHE ALA PHE GLY LYS SEQRES 10 A 329 PHE ASP GLY ILE LEU GLY LEU GLY TYR ASP THR ILE SER SEQRES 11 A 329 VAL ASP LYS VAL VAL PRO PRO PHE TYR ASN ALA ILE GLN SEQRES 12 A 329 GLN ASP LEU LEU ASP GLU LYS ARG PHE ALA PHE TYR LEU SEQRES 13 A 329 GLY ASP THR SER LYS ASP THR GLU ASN GLY GLY GLU ALA SEQRES 14 A 329 THR PHE GLY GLY ILE ASP GLU SER LYS PHE LYS GLY ASP SEQRES 15 A 329 ILE THR TRP LEU PRO VAL ARG ARG LYS ALA TYR TRP GLU SEQRES 16 A 329 VAL LYS PHE GLU GLY ILE GLY LEU GLY ASP GLU TYR ALA SEQRES 17 A 329 GLU LEU GLU SER HIS GLY ALA ALA ILE ASP THR GLY THR SEQRES 18 A 329 SER LEU ILE THR LEU PRO SER GLY LEU ALA GLU MET ILE SEQRES 19 A 329 ASN ALA GLU ILE GLY ALA LYS LYS GLY TRP THR GLY GLN SEQRES 20 A 329 TYR THR LEU ASP CYS ASN THR ARG ASP ASN LEU PRO ASP SEQRES 21 A 329 LEU ILE PHE ASN PHE ASN GLY TYR ASN PHE THR ILE GLY SEQRES 22 A 329 PRO TYR ASP TYR THR LEU GLU VAL SER GLY SER CYS ILE SEQRES 23 A 329 SER ALA ILE THR PRO MET ASP PHE PRO GLU PRO VAL GLY SEQRES 24 A 329 PRO LEU ALA ILE VAL GLY ASP ALA PHE LEU ARG LYS TYR SEQRES 25 A 329 TYR SER ILE TYR ASP LEU GLY ASN ASN ALA VAL GLY LEU SEQRES 26 A 329 ALA LYS ALA ILE SEQRES 1 B 33 ASN THR ASP GLN GLN LYS VAL SER GLU ILE PHE GLN SER SEQRES 2 B 33 SER LYS GLU LYS LEU GLN GLY ASP ALA LYS VAL VAL SER SEQRES 3 B 33 ASP ALA PHE LYS LYS MET ALA MODRES 1DPJ ASN A 67 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET BMA C 6 11 HET MAN C 7 11 HET MAN C 8 11 HET MAN C 9 11 HET NAG A 800 14 HET SO4 A 801 5 HET SO4 A 803 5 HET SO4 B 802 5 HET SO4 B 804 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 5(C6 H12 O6) FORMUL 5 SO4 4(O4 S 2-) FORMUL 9 HOH *372(H2 O) HELIX 1 1 SER A 47 LEU A 52 1 6 HELIX 2 2 ASP A 57 SER A 61 5 5 HELIX 3 3 PRO A 108 ALA A 113 1 6 HELIX 4 4 TYR A 125 SER A 129 5 5 HELIX 5 5 SER A 129 VAL A 133 5 5 HELIX 6 6 PRO A 135 GLN A 143 1 9 HELIX 7 8 ASP A 171 SER A 173 5 3 HELIX 8 9 PRO A 224 GLY A 236 1 13 HELIX 9 10 ASP A 248 LEU A 255 5 8 HELIX 10 11 GLY A 302 ARG A 307 1 6 HELIX 11 12 THR B 3 LYS B 31 1 29 SHEET 1 A 6 HIS A 2 PRO A 5 0 SHEET 2 A 6 GLY A 163 PHE A 167 -1 O ALA A 165 N VAL A 4 SHEET 3 A 6 ARG A 150 LEU A 155 -1 O ALA A 152 N THR A 166 SHEET 4 A 6 TYR A 309 ASP A 314 -1 O SER A 311 N PHE A 153 SHEET 5 A 6 ALA A 319 ALA A 325 -1 O ALA A 319 N ASP A 314 SHEET 6 A 6 PHE A 175 PRO A 183 -1 N LYS A 176 O LYS A 324 SHEET 1 B10 THR A 7 TYR A 9 0 SHEET 2 B10 GLN A 13 LEU A 20 -1 O GLN A 13 N TYR A 9 SHEET 3 B10 GLN A 25 ASP A 32 -1 N GLN A 25 O LEU A 20 SHEET 4 B10 GLY A 119 GLY A 122 1 N GLY A 119 O LYS A 28 SHEET 5 B10 LEU A 38 PRO A 41 -1 N TRP A 39 O ILE A 120 SHEET 6 B10 LEU A 94 SER A 106 1 N ALA A 102 O LEU A 38 SHEET 7 B10 GLY A 78 ILE A 91 -1 N GLU A 81 O SER A 106 SHEET 8 B10 LYS A 65 TYR A 75 -1 N LYS A 65 O GLN A 86 SHEET 9 B10 GLY A 78 ILE A 91 -1 O GLY A 78 N TYR A 75 SHEET 10 B10 GLN A 13 LEU A 20 -1 O THR A 19 N SER A 90 SHEET 1 C 9 TYR A 265 ILE A 269 0 SHEET 2 C 9 LEU A 258 PHE A 262 -1 N LEU A 258 O ILE A 269 SHEET 3 C 9 GLU A 191 LEU A 199 -1 N GLU A 195 O ASN A 261 SHEET 4 C 9 GLU A 202 GLU A 205 -1 N GLU A 202 O LEU A 199 SHEET 5 C 9 GLU A 191 LEU A 199 -1 O ILE A 197 N ALA A 204 SHEET 6 C 9 GLY A 210 ILE A 214 -1 O ALA A 212 N VAL A 192 SHEET 7 C 9 LEU A 298 VAL A 301 1 O ALA A 299 N ALA A 213 SHEET 8 C 9 ILE A 221 LEU A 223 -1 N THR A 222 O ILE A 300 SHEET 9 C 9 ILE A 286 PRO A 288 1 N THR A 287 O ILE A 221 SHEET 1 D 4 LYS A 238 LYS A 239 0 SHEET 2 D 4 TYR A 245 LEU A 247 -1 O THR A 246 N LYS A 238 SHEET 3 D 4 SER A 281 SER A 284 -1 O CYS A 282 N LEU A 247 SHEET 4 D 4 THR A 275 VAL A 278 -1 O LEU A 276 N ILE A 283 SSBOND 1 CYS A 45 CYS A 50 1555 1555 2.04 SSBOND 2 CYS A 249 CYS A 282 1555 1555 2.04 LINK ND2 ASN A 67 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.37 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.39 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.40 LINK O6 BMA C 3 C1 MAN C 9 1555 1555 1.44 LINK O2 MAN C 4 C1 MAN C 5 1555 1555 1.41 LINK O6 MAN C 4 C1 MAN C 7 1555 1555 1.40 LINK O2 MAN C 5 C1 BMA C 6 1555 1555 1.38 LINK O2 MAN C 7 C1 MAN C 8 1555 1555 1.43 CISPEP 1 THR A 22 PRO A 23 0 1.15 CISPEP 2 GLU A 293 PRO A 294 0 -1.87 CISPEP 3 GLY A 296 PRO A 297 0 -0.25 CRYST1 191.660 191.660 52.080 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005218 0.003012 0.000000 0.00000 SCALE2 0.000000 0.006025 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019201 0.00000