data_1DPN # _entry.id 1DPN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DPN pdb_00001dpn 10.2210/pdb1dpn/pdb NDB BD0030 ? ? RCSB RCSB010270 ? ? WWPDB D_1000010270 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-04-04 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 21 4 'Structure model' '_pdbx_struct_conn_angle.value' 22 4 'Structure model' '_struct_conn.conn_type_id' 23 4 'Structure model' '_struct_conn.id' 24 4 'Structure model' '_struct_conn.pdbx_dist_value' 25 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 26 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 33 4 'Structure model' '_struct_conn.ptnr1_symmetry' 34 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 36 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 41 4 'Structure model' '_struct_conn.ptnr2_symmetry' 42 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 43 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 44 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DPN _pdbx_database_status.recvd_initial_deposition_date 1999-12-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name NDB _pdbx_database_related.db_id BD0007 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Egli, M.' 1 'Tereshko, V.' 2 'Teplova, M.' 3 'Minasov, G.' 4 'Joachimiak, A.' 5 'Sanishvili, R.' 6 'Weeks, C.M.' 7 'Miller, R.' 8 'Maier, M.A.' 9 'An, H.' 10 'Dan Cook, P.' 11 'Manoharan, M.' 12 # _citation.id primary _citation.title 'X-ray crystallographic analysis of the hydration of A- and B-form DNA at atomic resolution.' _citation.journal_abbrev Biopolymers _citation.journal_volume 48 _citation.page_first 234 _citation.page_last 252 _citation.year 1998 _citation.journal_id_ASTM BIPMAA _citation.country US _citation.journal_id_ISSN 0006-3525 _citation.journal_id_CSD 0161 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10699842 _citation.pdbx_database_id_DOI '10.1002/(SICI)1097-0282(1998)48:4<234::AID-BIP4>3.0.CO;2-H' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Egli, M.' 1 ? primary 'Tereshko, V.' 2 ? primary 'Teplova, M.' 3 ? primary 'Minasov, G.' 4 ? primary 'Joachimiak, A.' 5 ? primary 'Sanishvili, R.' 6 ? primary 'Weeks, C.M.' 7 ? primary 'Miller, R.' 8 ? primary 'Maier, M.A.' 9 ? primary 'An, H.' 10 ? primary 'Dan Cook, P.' 11 ? primary 'Manoharan, M.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3') ; 3681.383 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 3 water nat water 18.015 252 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(TAF)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 TAF n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 TAF 'DNA linking' n ;2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE-5'-PHOSPHATE ; ? 'C10 H14 F N2 O8 P' 340.199 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 TAF 7 7 7 TAF TAF A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 TAF 7 19 19 TAF TAF B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 25 25 MG MG A . D 2 MG 1 32 32 MG MG B . E 2 MG 1 38 38 MG MG B . F 2 MG 1 45 45 MG MG B . G 3 HOH 1 26 26 HOH TIP A . G 3 HOH 2 28 28 HOH TIP A . G 3 HOH 3 40 40 HOH TIP A . G 3 HOH 4 43 43 HOH TIP A . G 3 HOH 5 44 44 HOH TIP A . G 3 HOH 6 46 46 HOH TIP A . G 3 HOH 7 53 53 HOH TIP A . G 3 HOH 8 54 54 HOH TIP A . G 3 HOH 9 55 55 HOH TIP A . G 3 HOH 10 57 57 HOH TIP A . G 3 HOH 11 59 59 HOH TIP A . G 3 HOH 12 61 61 HOH TIP A . G 3 HOH 13 62 62 HOH TIP A . G 3 HOH 14 63 63 HOH TIP A . G 3 HOH 15 64 64 HOH TIP A . G 3 HOH 16 65 65 HOH TIP A . G 3 HOH 17 67 67 HOH TIP A . G 3 HOH 18 68 68 HOH TIP A . G 3 HOH 19 76 76 HOH TIP A . G 3 HOH 20 78 78 HOH TIP A . G 3 HOH 21 101 101 HOH TIP A . G 3 HOH 22 102 102 HOH TIP A . G 3 HOH 23 104 104 HOH TIP A . G 3 HOH 24 106 106 HOH TIP A . G 3 HOH 25 107 107 HOH TIP A . G 3 HOH 26 108 108 HOH TIP A . G 3 HOH 27 112 112 HOH TIP A . G 3 HOH 28 113 113 HOH TIP A . G 3 HOH 29 114 114 HOH TIP A . G 3 HOH 30 117 117 HOH TIP A . G 3 HOH 31 118 118 HOH TIP A . G 3 HOH 32 120 120 HOH TIP A . G 3 HOH 33 122 122 HOH TIP A . G 3 HOH 34 123 123 HOH TIP A . G 3 HOH 35 124 124 HOH TIP A . G 3 HOH 36 125 125 HOH TIP A . G 3 HOH 37 126 126 HOH TIP A . G 3 HOH 38 131 131 HOH TIP A . G 3 HOH 39 133 133 HOH TIP A . G 3 HOH 40 134 134 HOH TIP A . G 3 HOH 41 135 135 HOH TIP A . G 3 HOH 42 138 138 HOH TIP A . G 3 HOH 43 139 139 HOH TIP A . G 3 HOH 44 140 140 HOH TIP A . G 3 HOH 45 141 141 HOH TIP A . G 3 HOH 46 142 142 HOH TIP A . G 3 HOH 47 146 146 HOH TIP A . G 3 HOH 48 147 147 HOH TIP A . G 3 HOH 49 149 149 HOH TIP A . G 3 HOH 50 150 150 HOH TIP A . G 3 HOH 51 152 152 HOH TIP A . G 3 HOH 52 153 153 HOH TIP A . G 3 HOH 53 154 154 HOH TIP A . G 3 HOH 54 155 155 HOH TIP A . G 3 HOH 55 156 156 HOH TIP A . G 3 HOH 56 157 157 HOH TIP A . G 3 HOH 57 159 159 HOH TIP A . G 3 HOH 58 160 160 HOH TIP A . G 3 HOH 59 162 162 HOH TIP A . G 3 HOH 60 165 165 HOH TIP A . G 3 HOH 61 166 166 HOH TIP A . G 3 HOH 62 168 168 HOH TIP A . G 3 HOH 63 169 169 HOH TIP A . G 3 HOH 64 171 171 HOH TIP A . G 3 HOH 65 173 173 HOH TIP A . G 3 HOH 66 174 174 HOH TIP A . G 3 HOH 67 177 177 HOH TIP A . G 3 HOH 68 179 179 HOH TIP A . G 3 HOH 69 180 180 HOH TIP A . G 3 HOH 70 182 182 HOH TIP A . G 3 HOH 71 184 184 HOH TIP A . G 3 HOH 72 185 185 HOH TIP A . G 3 HOH 73 188 188 HOH TIP A . G 3 HOH 74 190 190 HOH TIP A . G 3 HOH 75 196 196 HOH TIP A . G 3 HOH 76 198 198 HOH TIP A . G 3 HOH 77 203 203 HOH TIP A . G 3 HOH 78 208 208 HOH TIP A . G 3 HOH 79 214 214 HOH TIP A . G 3 HOH 80 216 216 HOH TIP A . G 3 HOH 81 220 220 HOH TIP A . G 3 HOH 82 222 222 HOH TIP A . G 3 HOH 83 223 223 HOH TIP A . G 3 HOH 84 226 226 HOH TIP A . G 3 HOH 85 227 227 HOH TIP A . G 3 HOH 86 229 229 HOH TIP A . G 3 HOH 87 235 235 HOH TIP A . G 3 HOH 88 236 236 HOH TIP A . G 3 HOH 89 239 239 HOH TIP A . G 3 HOH 90 243 243 HOH TIP A . G 3 HOH 91 247 247 HOH TIP A . G 3 HOH 92 248 248 HOH TIP A . G 3 HOH 93 252 252 HOH TIP A . G 3 HOH 94 258 258 HOH TIP A . G 3 HOH 95 260 260 HOH TIP A . G 3 HOH 96 267 267 HOH TIP A . G 3 HOH 97 268 268 HOH TIP A . G 3 HOH 98 271 271 HOH TIP A . G 3 HOH 99 273 273 HOH TIP A . G 3 HOH 100 274 274 HOH TIP A . G 3 HOH 101 276 276 HOH TIP A . G 3 HOH 102 277 277 HOH TIP A . G 3 HOH 103 280 280 HOH TIP A . G 3 HOH 104 287 287 HOH TIP A . G 3 HOH 105 289 289 HOH TIP A . G 3 HOH 106 290 290 HOH TIP A . G 3 HOH 107 293 293 HOH TIP A . G 3 HOH 108 294 294 HOH TIP A . G 3 HOH 109 295 295 HOH TIP A . G 3 HOH 110 297 297 HOH TIP A . G 3 HOH 111 298 298 HOH TIP A . G 3 HOH 112 300 300 HOH TIP A . G 3 HOH 113 302 302 HOH TIP A . G 3 HOH 114 303 303 HOH TIP A . G 3 HOH 115 307 307 HOH TIP A . G 3 HOH 116 311 311 HOH TIP A . G 3 HOH 117 316 316 HOH TIP A . G 3 HOH 118 317 317 HOH TIP A . G 3 HOH 119 318 318 HOH TIP A . G 3 HOH 120 319 319 HOH TIP A . H 3 HOH 1 27 27 HOH TIP B . H 3 HOH 2 29 29 HOH TIP B . H 3 HOH 3 30 30 HOH TIP B . H 3 HOH 4 31 31 HOH TIP B . H 3 HOH 5 33 33 HOH TIP B . H 3 HOH 6 34 34 HOH TIP B . H 3 HOH 7 35 35 HOH TIP B . H 3 HOH 8 36 36 HOH TIP B . H 3 HOH 9 37 37 HOH TIP B . H 3 HOH 10 39 39 HOH TIP B . H 3 HOH 11 41 41 HOH TIP B . H 3 HOH 12 42 42 HOH TIP B . H 3 HOH 13 47 47 HOH TIP B . H 3 HOH 14 48 48 HOH TIP B . H 3 HOH 15 49 49 HOH TIP B . H 3 HOH 16 50 50 HOH TIP B . H 3 HOH 17 52 52 HOH TIP B . H 3 HOH 18 56 56 HOH TIP B . H 3 HOH 19 58 58 HOH TIP B . H 3 HOH 20 66 66 HOH TIP B . H 3 HOH 21 69 69 HOH TIP B . H 3 HOH 22 70 70 HOH TIP B . H 3 HOH 23 72 72 HOH TIP B . H 3 HOH 24 73 73 HOH TIP B . H 3 HOH 25 74 74 HOH TIP B . H 3 HOH 26 75 75 HOH TIP B . H 3 HOH 27 77 77 HOH TIP B . H 3 HOH 28 79 79 HOH TIP B . H 3 HOH 29 103 103 HOH TIP B . H 3 HOH 30 105 105 HOH TIP B . H 3 HOH 31 109 109 HOH TIP B . H 3 HOH 32 110 110 HOH TIP B . H 3 HOH 33 111 111 HOH TIP B . H 3 HOH 34 115 115 HOH TIP B . H 3 HOH 35 116 116 HOH TIP B . H 3 HOH 36 119 119 HOH TIP B . H 3 HOH 37 121 121 HOH TIP B . H 3 HOH 38 127 127 HOH TIP B . H 3 HOH 39 128 128 HOH TIP B . H 3 HOH 40 129 129 HOH TIP B . H 3 HOH 41 130 130 HOH TIP B . H 3 HOH 42 132 132 HOH TIP B . H 3 HOH 43 136 136 HOH TIP B . H 3 HOH 44 137 137 HOH TIP B . H 3 HOH 45 143 143 HOH TIP B . H 3 HOH 46 144 144 HOH TIP B . H 3 HOH 47 145 145 HOH TIP B . H 3 HOH 48 148 148 HOH TIP B . H 3 HOH 49 151 151 HOH TIP B . H 3 HOH 50 161 161 HOH TIP B . H 3 HOH 51 163 163 HOH TIP B . H 3 HOH 52 164 164 HOH TIP B . H 3 HOH 53 167 167 HOH TIP B . H 3 HOH 54 170 170 HOH TIP B . H 3 HOH 55 172 172 HOH TIP B . H 3 HOH 56 175 175 HOH TIP B . H 3 HOH 57 176 176 HOH TIP B . H 3 HOH 58 178 178 HOH TIP B . H 3 HOH 59 181 181 HOH TIP B . H 3 HOH 60 183 183 HOH TIP B . H 3 HOH 61 186 186 HOH TIP B . H 3 HOH 62 187 187 HOH TIP B . H 3 HOH 63 191 191 HOH TIP B . H 3 HOH 64 192 192 HOH TIP B . H 3 HOH 65 193 193 HOH TIP B . H 3 HOH 66 195 195 HOH TIP B . H 3 HOH 67 197 197 HOH TIP B . H 3 HOH 68 199 199 HOH TIP B . H 3 HOH 69 200 200 HOH TIP B . H 3 HOH 70 201 201 HOH TIP B . H 3 HOH 71 202 202 HOH TIP B . H 3 HOH 72 204 204 HOH TIP B . H 3 HOH 73 205 205 HOH TIP B . H 3 HOH 74 206 206 HOH TIP B . H 3 HOH 75 207 207 HOH TIP B . H 3 HOH 76 209 209 HOH TIP B . H 3 HOH 77 210 210 HOH TIP B . H 3 HOH 78 211 211 HOH TIP B . H 3 HOH 79 212 212 HOH TIP B . H 3 HOH 80 213 213 HOH TIP B . H 3 HOH 81 217 217 HOH TIP B . H 3 HOH 82 218 218 HOH TIP B . H 3 HOH 83 219 219 HOH TIP B . H 3 HOH 84 221 221 HOH TIP B . H 3 HOH 85 228 228 HOH TIP B . H 3 HOH 86 230 230 HOH TIP B . H 3 HOH 87 232 232 HOH TIP B . H 3 HOH 88 234 234 HOH TIP B . H 3 HOH 89 237 237 HOH TIP B . H 3 HOH 90 238 238 HOH TIP B . H 3 HOH 91 240 240 HOH TIP B . H 3 HOH 92 242 242 HOH TIP B . H 3 HOH 93 244 244 HOH TIP B . H 3 HOH 94 245 245 HOH TIP B . H 3 HOH 95 246 246 HOH TIP B . H 3 HOH 96 250 250 HOH TIP B . H 3 HOH 97 251 251 HOH TIP B . H 3 HOH 98 253 253 HOH TIP B . H 3 HOH 99 256 256 HOH TIP B . H 3 HOH 100 257 257 HOH TIP B . H 3 HOH 101 261 261 HOH TIP B . H 3 HOH 102 263 263 HOH TIP B . H 3 HOH 103 264 264 HOH TIP B . H 3 HOH 104 265 265 HOH TIP B . H 3 HOH 105 270 270 HOH TIP B . H 3 HOH 106 272 272 HOH TIP B . H 3 HOH 107 275 275 HOH TIP B . H 3 HOH 108 278 278 HOH TIP B . H 3 HOH 109 279 279 HOH TIP B . H 3 HOH 110 282 282 HOH TIP B . H 3 HOH 111 283 283 HOH TIP B . H 3 HOH 112 284 284 HOH TIP B . H 3 HOH 113 285 285 HOH TIP B . H 3 HOH 114 286 286 HOH TIP B . H 3 HOH 115 288 288 HOH TIP B . H 3 HOH 116 291 291 HOH TIP B . H 3 HOH 117 292 292 HOH TIP B . H 3 HOH 118 299 299 HOH TIP B . H 3 HOH 119 301 301 HOH TIP B . H 3 HOH 120 304 304 HOH TIP B . H 3 HOH 121 305 305 HOH TIP B . H 3 HOH 122 306 306 HOH TIP B . H 3 HOH 123 308 308 HOH TIP B . H 3 HOH 124 309 309 HOH TIP B . H 3 HOH 125 310 310 HOH TIP B . H 3 HOH 126 312 312 HOH TIP B . H 3 HOH 127 313 313 HOH TIP B . H 3 HOH 128 314 314 HOH TIP B . H 3 HOH 129 315 315 HOH TIP B . H 3 HOH 130 320 320 HOH TIP B . H 3 HOH 131 1001 1001 HOH TIP B . H 3 HOH 132 1002 1002 HOH TIP B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 SHELXL-97 refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 1DPN _cell.length_a 24.623 _cell.length_b 39.732 _cell.length_c 65.737 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.0 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DPN _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 # _exptl.entry_id 1DPN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_percent_sol 43.67 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.pdbx_details 'SODIUM CACODYLATE, MAGNESIUM ACETATE, SPERMINE, pH 6.9, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'SODIUM CACODYLATE' ? ? ? 1 2 1 'MAGNESIUM ACETATE' ? ? ? 1 3 1 SPERMINE ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type CUSTOM-MADE _diffrn_detector.pdbx_collection_date 1999-02-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8152 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength 0.8152 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DPN _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 0.95 _reflns.number_obs 39151 _reflns.number_all 39151 _reflns.percent_possible_obs 94.3 _reflns.pdbx_Rmerge_I_obs 0.0470000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.2 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 0.95 _reflns_shell.d_res_low 1.0 _reflns_shell.percent_possible_all 70.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1DPN _refine.ls_number_reflns_obs 39151 _refine.ls_number_reflns_all 39151 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 0.95 _refine.ls_percent_reflns_obs 94.3 _refine.ls_R_factor_obs 0.1600000 _refine.ls_R_factor_all 0.1600000 _refine.ls_R_factor_R_work 0.1710000 _refine.ls_R_factor_R_free 0.1590000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10 _refine.ls_number_reflns_R_free 3900 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'PARKINSON ET AL.' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 570 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 252 _refine_hist.number_atoms_total 826 _refine_hist.d_res_high 0.95 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes ? ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1DPN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1DPN _struct.title ;B-DODECAMER CGCGAA(TAF)TCGCG WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DPN _struct_keywords.pdbx_keywords DNA _struct_keywords.text '0.95 A RESOLUTION STRUCTURE, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1DPN _struct_ref.pdbx_db_accession 1DPN _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DPN A 1 ? 12 ? 1DPN 1 ? 12 ? 1 12 2 1 1DPN B 1 ? 12 ? 1DPN 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 6 "O3'" ? ? ? 1_555 A TAF 7 P ? ? A DA 6 A TAF 7 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale2 covale one ? A TAF 7 "O3'" ? ? ? 1_555 A DT 8 P ? ? A TAF 7 A DT 8 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale3 covale both ? B DA 6 "O3'" ? ? ? 1_555 B TAF 7 P ? ? B DA 18 B TAF 19 1_555 ? ? ? ? ? ? ? 1.571 ? ? covale4 covale one ? B TAF 7 "O3'" ? ? ? 1_555 B DT 8 P ? ? B TAF 19 B DT 20 1_555 ? ? ? ? ? ? ? 1.578 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 25 A HOH 26 1_555 ? ? ? ? ? ? ? 2.086 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 25 A HOH 28 1_555 ? ? ? ? ? ? ? 2.040 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 25 B HOH 27 1_555 ? ? ? ? ? ? ? 2.045 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 25 B HOH 29 1_555 ? ? ? ? ? ? ? 2.123 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 25 B HOH 30 1_555 ? ? ? ? ? ? ? 2.052 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 25 B HOH 31 1_555 ? ? ? ? ? ? ? 2.064 ? ? metalc7 metalc ? ? G HOH . O ? ? ? 1_555 E MG . MG ? ? A HOH 40 B MG 38 1_555 ? ? ? ? ? ? ? 2.092 ? ? metalc8 metalc ? ? G HOH . O ? ? ? 1_555 E MG . MG ? ? A HOH 43 B MG 38 1_555 ? ? ? ? ? ? ? 1.935 ? ? metalc9 metalc ? ? G HOH . O ? ? ? 1_555 E MG . MG ? ? A HOH 44 B MG 38 1_555 ? ? ? ? ? ? ? 1.951 ? ? metalc10 metalc ? ? G HOH . O ? ? ? 4_456 F MG . MG ? ? A HOH 46 B MG 45 1_555 ? ? ? ? ? ? ? 2.106 ? ? metalc11 metalc ? ? B DA 5 OP1 ? ? ? 1_555 F MG . MG ? ? B DA 17 B MG 45 1_555 ? ? ? ? ? ? ? 2.113 ? ? metalc12 metalc ? ? B TAF 7 OP1 ? ? ? 3_645 D MG . MG ? ? B TAF 19 B MG 32 1_555 ? ? ? ? ? ? ? 2.084 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 32 B HOH 33 1_555 ? ? ? ? ? ? ? 1.966 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 32 B HOH 34 1_555 ? ? ? ? ? ? ? 2.140 ? ? metalc15 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 32 B HOH 35 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc16 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 32 B HOH 36 1_555 ? ? ? ? ? ? ? 2.087 ? ? metalc17 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 32 B HOH 37 1_555 ? ? ? ? ? ? ? 2.002 ? ? metalc18 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 38 B HOH 39 1_555 ? ? ? ? ? ? ? 2.149 ? ? metalc19 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 38 B HOH 41 1_555 ? ? ? ? ? ? ? 2.074 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 38 B HOH 42 1_555 ? ? ? ? ? ? ? 2.048 ? ? metalc21 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 45 B HOH 47 1_555 ? ? ? ? ? ? ? 2.377 ? ? metalc22 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 45 B HOH 48 1_555 ? ? ? ? ? ? ? 1.958 ? ? metalc23 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 45 B HOH 49 1_555 ? ? ? ? ? ? ? 2.688 ? ? metalc24 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 45 B HOH 50 1_555 ? ? ? ? ? ? ? 2.438 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B TAF 7 N3 ? ? A DA 6 B TAF 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B TAF 7 O4 ? ? A DA 6 B TAF 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A TAF 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A TAF 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A TAF 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A TAF 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 A ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 A ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 A ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? G HOH . ? A HOH 26 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? G HOH . ? A HOH 28 ? 1_555 90.0 ? 2 O ? G HOH . ? A HOH 26 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 27 ? 1_555 175.8 ? 3 O ? G HOH . ? A HOH 28 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 27 ? 1_555 87.8 ? 4 O ? G HOH . ? A HOH 26 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 29 ? 1_555 89.0 ? 5 O ? G HOH . ? A HOH 28 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 29 ? 1_555 173.7 ? 6 O ? H HOH . ? B HOH 27 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 29 ? 1_555 93.6 ? 7 O ? G HOH . ? A HOH 26 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 30 ? 1_555 94.1 ? 8 O ? G HOH . ? A HOH 28 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 30 ? 1_555 86.9 ? 9 O ? H HOH . ? B HOH 27 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 30 ? 1_555 89.3 ? 10 O ? H HOH . ? B HOH 29 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 30 ? 1_555 87.0 ? 11 O ? G HOH . ? A HOH 26 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 31 ? 1_555 89.7 ? 12 O ? G HOH . ? A HOH 28 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 31 ? 1_555 95.9 ? 13 O ? H HOH . ? B HOH 27 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 31 ? 1_555 87.0 ? 14 O ? H HOH . ? B HOH 29 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 31 ? 1_555 90.3 ? 15 O ? H HOH . ? B HOH 30 ? 1_555 MG ? C MG . ? A MG 25 ? 1_555 O ? H HOH . ? B HOH 31 ? 1_555 175.2 ? 16 O ? G HOH . ? A HOH 40 ? 1_555 MG ? E MG . ? B MG 38 ? 1_555 O ? G HOH . ? A HOH 43 ? 1_555 92.6 ? 17 O ? G HOH . ? A HOH 40 ? 1_555 MG ? E MG . ? B MG 38 ? 1_555 O ? G HOH . ? A HOH 44 ? 1_555 86.2 ? 18 O ? G HOH . ? A HOH 43 ? 1_555 MG ? E MG . ? B MG 38 ? 1_555 O ? G HOH . ? A HOH 44 ? 1_555 176.3 ? 19 O ? G HOH . ? A HOH 40 ? 1_555 MG ? E MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 39 ? 1_555 92.6 ? 20 O ? G HOH . ? A HOH 43 ? 1_555 MG ? E MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 39 ? 1_555 90.2 ? 21 O ? G HOH . ? A HOH 44 ? 1_555 MG ? E MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 39 ? 1_555 86.3 ? 22 O ? G HOH . ? A HOH 40 ? 1_555 MG ? E MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 41 ? 1_555 90.6 ? 23 O ? G HOH . ? A HOH 43 ? 1_555 MG ? E MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 41 ? 1_555 96.0 ? 24 O ? G HOH . ? A HOH 44 ? 1_555 MG ? E MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 41 ? 1_555 87.5 ? 25 O ? H HOH . ? B HOH 39 ? 1_555 MG ? E MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 41 ? 1_555 172.9 ? 26 O ? G HOH . ? A HOH 40 ? 1_555 MG ? E MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 42 ? 1_555 172.5 ? 27 O ? G HOH . ? A HOH 43 ? 1_555 MG ? E MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 42 ? 1_555 88.7 ? 28 O ? G HOH . ? A HOH 44 ? 1_555 MG ? E MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 42 ? 1_555 93.0 ? 29 O ? H HOH . ? B HOH 39 ? 1_555 MG ? E MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 42 ? 1_555 94.8 ? 30 O ? H HOH . ? B HOH 41 ? 1_555 MG ? E MG . ? B MG 38 ? 1_555 O ? H HOH . ? B HOH 42 ? 1_555 81.9 ? 31 O ? G HOH . ? A HOH 46 ? 4_456 MG ? F MG . ? B MG 45 ? 1_555 OP1 ? B DA 5 ? B DA 17 ? 1_555 177.9 ? 32 O ? G HOH . ? A HOH 46 ? 4_456 MG ? F MG . ? B MG 45 ? 1_555 O ? H HOH . ? B HOH 47 ? 1_555 97.4 ? 33 OP1 ? B DA 5 ? B DA 17 ? 1_555 MG ? F MG . ? B MG 45 ? 1_555 O ? H HOH . ? B HOH 47 ? 1_555 81.0 ? 34 O ? G HOH . ? A HOH 46 ? 4_456 MG ? F MG . ? B MG 45 ? 1_555 O ? H HOH . ? B HOH 48 ? 1_555 105.5 ? 35 OP1 ? B DA 5 ? B DA 17 ? 1_555 MG ? F MG . ? B MG 45 ? 1_555 O ? H HOH . ? B HOH 48 ? 1_555 75.7 ? 36 O ? H HOH . ? B HOH 47 ? 1_555 MG ? F MG . ? B MG 45 ? 1_555 O ? H HOH . ? B HOH 48 ? 1_555 81.5 ? 37 O ? G HOH . ? A HOH 46 ? 4_456 MG ? F MG . ? B MG 45 ? 1_555 O ? H HOH . ? B HOH 49 ? 1_555 92.4 ? 38 OP1 ? B DA 5 ? B DA 17 ? 1_555 MG ? F MG . ? B MG 45 ? 1_555 O ? H HOH . ? B HOH 49 ? 1_555 85.9 ? 39 O ? H HOH . ? B HOH 47 ? 1_555 MG ? F MG . ? B MG 45 ? 1_555 O ? H HOH . ? B HOH 49 ? 1_555 74.6 ? 40 O ? H HOH . ? B HOH 48 ? 1_555 MG ? F MG . ? B MG 45 ? 1_555 O ? H HOH . ? B HOH 49 ? 1_555 151.8 ? 41 O ? G HOH . ? A HOH 46 ? 4_456 MG ? F MG . ? B MG 45 ? 1_555 O ? H HOH . ? B HOH 50 ? 1_555 95.6 ? 42 OP1 ? B DA 5 ? B DA 17 ? 1_555 MG ? F MG . ? B MG 45 ? 1_555 O ? H HOH . ? B HOH 50 ? 1_555 85.5 ? 43 O ? H HOH . ? B HOH 47 ? 1_555 MG ? F MG . ? B MG 45 ? 1_555 O ? H HOH . ? B HOH 50 ? 1_555 156.1 ? 44 O ? H HOH . ? B HOH 48 ? 1_555 MG ? F MG . ? B MG 45 ? 1_555 O ? H HOH . ? B HOH 50 ? 1_555 114.1 ? 45 O ? H HOH . ? B HOH 49 ? 1_555 MG ? F MG . ? B MG 45 ? 1_555 O ? H HOH . ? B HOH 50 ? 1_555 84.9 ? 46 OP1 ? B TAF 7 ? B TAF 19 ? 3_645 MG ? D MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 33 ? 1_555 90.4 ? 47 OP1 ? B TAF 7 ? B TAF 19 ? 3_645 MG ? D MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 34 ? 1_555 177.5 ? 48 O ? H HOH . ? B HOH 33 ? 1_555 MG ? D MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 34 ? 1_555 87.7 ? 49 OP1 ? B TAF 7 ? B TAF 19 ? 3_645 MG ? D MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 35 ? 1_555 94.9 ? 50 O ? H HOH . ? B HOH 33 ? 1_555 MG ? D MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 35 ? 1_555 92.4 ? 51 O ? H HOH . ? B HOH 34 ? 1_555 MG ? D MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 35 ? 1_555 86.7 ? 52 OP1 ? B TAF 7 ? B TAF 19 ? 3_645 MG ? D MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 36 ? 1_555 88.5 ? 53 O ? H HOH . ? B HOH 33 ? 1_555 MG ? D MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 36 ? 1_555 178.9 ? 54 O ? H HOH . ? B HOH 34 ? 1_555 MG ? D MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 36 ? 1_555 93.4 ? 55 O ? H HOH . ? B HOH 35 ? 1_555 MG ? D MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 36 ? 1_555 87.5 ? 56 OP1 ? B TAF 7 ? B TAF 19 ? 3_645 MG ? D MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 37 ? 1_555 90.9 ? 57 O ? H HOH . ? B HOH 33 ? 1_555 MG ? D MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 37 ? 1_555 87.1 ? 58 O ? H HOH . ? B HOH 34 ? 1_555 MG ? D MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 37 ? 1_555 87.4 ? 59 O ? H HOH . ? B HOH 35 ? 1_555 MG ? D MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 37 ? 1_555 174.1 ? 60 O ? H HOH . ? B HOH 36 ? 1_555 MG ? D MG . ? B MG 32 ? 1_555 O ? H HOH . ? B HOH 37 ? 1_555 93.2 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 25 ? 6 'BINDING SITE FOR RESIDUE MG A 25' AC2 Software B MG 32 ? 6 'BINDING SITE FOR RESIDUE MG B 32' AC3 Software B MG 38 ? 6 'BINDING SITE FOR RESIDUE MG B 38' AC4 Software B MG 45 ? 6 'BINDING SITE FOR RESIDUE MG B 45' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH G . ? HOH A 26 . ? 1_555 ? 2 AC1 6 HOH G . ? HOH A 28 . ? 1_555 ? 3 AC1 6 HOH H . ? HOH B 27 . ? 1_555 ? 4 AC1 6 HOH H . ? HOH B 29 . ? 1_555 ? 5 AC1 6 HOH H . ? HOH B 30 . ? 1_555 ? 6 AC1 6 HOH H . ? HOH B 31 . ? 1_555 ? 7 AC2 6 TAF B 7 ? TAF B 19 . ? 3_645 ? 8 AC2 6 HOH H . ? HOH B 33 . ? 1_555 ? 9 AC2 6 HOH H . ? HOH B 34 . ? 1_555 ? 10 AC2 6 HOH H . ? HOH B 35 . ? 1_555 ? 11 AC2 6 HOH H . ? HOH B 36 . ? 1_555 ? 12 AC2 6 HOH H . ? HOH B 37 . ? 1_555 ? 13 AC3 6 HOH G . ? HOH A 40 . ? 1_555 ? 14 AC3 6 HOH G . ? HOH A 43 . ? 1_555 ? 15 AC3 6 HOH G . ? HOH A 44 . ? 1_555 ? 16 AC3 6 HOH H . ? HOH B 39 . ? 1_555 ? 17 AC3 6 HOH H . ? HOH B 41 . ? 1_555 ? 18 AC3 6 HOH H . ? HOH B 42 . ? 1_555 ? 19 AC4 6 HOH G . ? HOH A 46 . ? 4_456 ? 20 AC4 6 DA B 5 ? DA B 17 . ? 1_555 ? 21 AC4 6 HOH H . ? HOH B 47 . ? 1_555 ? 22 AC4 6 HOH H . ? HOH B 48 . ? 1_555 ? 23 AC4 6 HOH H . ? HOH B 49 . ? 1_555 ? 24 AC4 6 HOH H . ? HOH B 50 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 B DG 24 ? B O B HOH 148 ? ? 1.46 2 1 OP1 B DG 14 ? B O B HOH 192 ? ? 1.66 3 1 "O3'" A DG 12 ? ? O A HOH 171 ? ? 2.12 4 1 OP2 B DG 24 ? A O B HOH 148 ? ? 2.15 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 147 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 128 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_645 _pdbx_validate_symm_contact.dist 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? 1.454 1.516 -0.062 0.008 N 2 1 "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.447 1.518 -0.071 0.010 N 3 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.542 1.420 0.122 0.011 N 4 1 "O3'" A DC 3 ? ? P A DG 4 ? B 1.484 1.607 -0.123 0.012 Y 5 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? 1.492 1.420 0.072 0.011 N 6 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? 1.496 1.420 0.076 0.011 N 7 1 "C2'" A DT 8 ? ? "C1'" A DT 8 ? ? 1.435 1.518 -0.083 0.010 N 8 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? 1.546 1.420 0.126 0.011 N 9 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? 1.539 1.420 0.119 0.011 N 10 1 "O3'" A DG 10 ? ? P A DC 11 ? B 1.513 1.607 -0.094 0.012 Y 11 1 "C2'" A DC 11 ? A "C1'" A DC 11 ? A 1.456 1.518 -0.062 0.010 N 12 1 "O4'" A DC 11 ? A "C1'" A DC 11 ? A 1.487 1.420 0.067 0.011 N 13 1 "O4'" A DC 11 ? B "C1'" A DC 11 ? B 1.498 1.420 0.078 0.011 N 14 1 "C2'" B DG 14 ? A "C1'" B DG 14 ? A 1.457 1.518 -0.061 0.010 N 15 1 "C3'" B DC 15 ? ? "C2'" B DC 15 ? ? 1.462 1.516 -0.054 0.008 N 16 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? 1.490 1.420 0.070 0.011 N 17 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? 1.529 1.420 0.109 0.011 N 18 1 "C2'" B DT 20 ? ? "C1'" B DT 20 ? ? 1.439 1.518 -0.079 0.010 N 19 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? 1.525 1.420 0.105 0.011 N 20 1 "C2'" B DC 21 ? A "C1'" B DC 21 ? A 1.444 1.518 -0.074 0.010 N 21 1 "C2'" B DC 21 ? B "C1'" B DC 21 ? B 1.454 1.518 -0.064 0.010 N 22 1 "O4'" B DC 21 ? A "C1'" B DC 21 ? A 1.543 1.420 0.123 0.011 N 23 1 "O4'" B DC 21 ? B "C1'" B DC 21 ? B 1.529 1.420 0.109 0.011 N 24 1 "O3'" B DG 22 ? ? P B DC 23 ? A 1.489 1.607 -0.118 0.012 Y 25 1 "C2'" B DC 23 ? A "C1'" B DC 23 ? A 1.458 1.518 -0.060 0.010 N 26 1 "O4'" B DC 23 ? A "C1'" B DC 23 ? A 1.490 1.420 0.070 0.011 N 27 1 "O4'" B DG 24 ? A "C1'" B DG 24 ? A 1.522 1.420 0.102 0.011 N 28 1 "O4'" B DG 24 ? B "C1'" B DG 24 ? B 1.514 1.420 0.094 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 102.75 108.00 -5.25 0.70 N 2 1 "C1'" A DC 3 ? ? "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? 104.05 110.10 -6.05 1.00 N 3 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 101.98 108.00 -6.02 0.70 N 4 1 "C3'" A DC 3 ? ? "O3'" A DC 3 ? ? P A DG 4 ? B 135.20 119.70 15.50 1.20 Y 5 1 "O5'" A DG 4 ? B "C5'" A DG 4 ? B "C4'" A DG 4 ? B 104.05 109.40 -5.35 0.80 N 6 1 P A DG 4 ? A "O5'" A DG 4 ? A "C5'" A DG 4 ? A 132.65 120.90 11.75 1.60 N 7 1 "C3'" A DG 4 ? B "O3'" A DG 4 ? B P A DA 5 ? ? 129.38 119.70 9.68 1.20 Y 8 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 103.60 108.00 -4.40 0.70 N 9 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 103.56 108.00 -4.44 0.70 N 10 1 "C1'" A DT 8 ? ? "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? 103.81 110.10 -6.29 1.00 N 11 1 N1 A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 124.74 114.30 10.44 1.40 N 12 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 99.53 108.00 -8.47 0.70 N 13 1 N1 A DC 9 ? ? "C1'" A DC 9 ? ? "C2'" A DC 9 ? ? 125.53 114.30 11.23 1.40 N 14 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 98.80 108.00 -9.20 0.70 N 15 1 "C1'" A DG 10 ? ? "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? 104.06 110.10 -6.04 1.00 N 16 1 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P A DC 11 ? A 127.16 119.70 7.46 1.20 Y 17 1 "O4'" A DC 11 ? A "C1'" A DC 11 ? A N1 A DC 11 ? ? 100.34 108.00 -7.66 0.70 N 18 1 "O4'" A DC 11 ? B "C1'" A DC 11 ? B N1 A DC 11 ? ? 99.79 108.00 -8.21 0.70 N 19 1 "C1'" A DG 12 ? ? "O4'" A DG 12 ? ? "C4'" A DG 12 ? ? 103.79 110.10 -6.31 1.00 N 20 1 "O4'" B DC 13 ? B "C1'" B DC 13 ? B N1 B DC 13 ? B 110.45 108.30 2.15 0.30 N 21 1 "C3'" B DC 13 ? B "O3'" B DC 13 ? B P B DG 14 ? B 141.54 119.70 21.84 1.20 Y 22 1 "O4'" B DG 14 ? A "C1'" B DG 14 ? A N9 B DG 14 ? ? 103.59 108.00 -4.41 0.70 N 23 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 102.27 108.00 -5.73 0.70 N 24 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.86 108.30 3.56 0.30 N 25 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 102.81 108.00 -5.19 0.70 N 26 1 N1 B DT 20 ? ? "C1'" B DT 20 ? ? "C2'" B DT 20 ? ? 123.15 114.30 8.85 1.40 N 27 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 102.10 108.00 -5.90 0.70 N 28 1 "C3'" B DT 20 ? ? "O3'" B DT 20 ? ? P B DC 21 ? B 145.65 119.70 25.95 1.20 Y 29 1 "O3'" B DT 20 ? ? P B DC 21 ? A OP2 B DC 21 ? A 117.66 110.50 7.16 1.10 Y 30 1 "O5'" B DC 21 ? A "C5'" B DC 21 ? A "C4'" B DC 21 ? A 101.17 109.40 -8.23 0.80 N 31 1 "O4'" B DC 21 ? A "C4'" B DC 21 ? A "C3'" B DC 21 ? A 111.57 106.00 5.57 0.60 N 32 1 "C1'" B DC 21 ? A "O4'" B DC 21 ? A "C4'" B DC 21 ? A 102.43 110.10 -7.67 1.00 N 33 1 "C1'" B DC 21 ? B "O4'" B DC 21 ? B "C4'" B DC 21 ? B 103.70 110.10 -6.40 1.00 N 34 1 N1 B DC 21 ? ? "C1'" B DC 21 ? A "C2'" B DC 21 ? A 125.86 114.30 11.56 1.40 N 35 1 N1 B DC 21 ? ? "C1'" B DC 21 ? B "C2'" B DC 21 ? B 125.76 114.30 11.46 1.40 N 36 1 "O4'" B DC 21 ? A "C1'" B DC 21 ? A N1 B DC 21 ? ? 97.99 108.00 -10.01 0.70 N 37 1 "O4'" B DC 21 ? B "C1'" B DC 21 ? B N1 B DC 21 ? ? 97.95 108.00 -10.05 0.70 N 38 1 "C3'" B DC 21 ? B "O3'" B DC 21 ? B P B DG 22 ? ? 127.93 119.70 8.23 1.20 Y 39 1 "C3'" B DG 22 ? ? "O3'" B DG 22 ? ? P B DC 23 ? A 131.40 119.70 11.70 1.20 Y 40 1 "O4'" B DC 23 ? A "C1'" B DC 23 ? A N1 B DC 23 ? ? 102.74 108.00 -5.26 0.70 N 41 1 "C3'" B DC 23 ? A "O3'" B DC 23 ? A P B DG 24 ? A 129.60 119.70 9.90 1.20 Y 42 1 "C3'" B DC 23 ? B "O3'" B DC 23 ? B P B DG 24 ? B 111.16 119.70 -8.54 1.20 Y 43 1 "O5'" B DG 24 ? B P B DG 24 ? B OP2 B DG 24 ? B 98.08 105.70 -7.62 0.90 N 44 1 "O4'" B DG 24 ? A "C4'" B DG 24 ? A "C3'" B DG 24 ? A 101.97 104.50 -2.53 0.40 N 45 1 "O4'" B DG 24 ? A "C1'" B DG 24 ? A N9 B DG 24 ? ? 102.43 108.00 -5.57 0.70 N 46 1 "O4'" B DG 24 ? B "C1'" B DG 24 ? B N9 B DG 24 ? ? 102.69 108.00 -5.31 0.70 N 47 1 N1 B DG 24 ? ? C6 B DG 24 ? ? O6 B DG 24 ? ? 115.99 119.90 -3.91 0.60 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A TAF 7 A TAF 7 ? DT ? 2 B TAF 7 B TAF 19 ? DT ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MG MG MG N N 147 TAF P P N N 148 TAF OP1 O N N 149 TAF OP2 O N N 150 TAF OP3 O N N 151 TAF "O5'" O N N 152 TAF N1 N N N 153 TAF C6 C N N 154 TAF C2 C N N 155 TAF O2 O N N 156 TAF N3 N N N 157 TAF C4 C N N 158 TAF O4 O N N 159 TAF C5 C N N 160 TAF C5M C N N 161 TAF "F2'" F N N 162 TAF "C2'" C N S 163 TAF "C5'" C N N 164 TAF "C4'" C N R 165 TAF "O4'" O N N 166 TAF "C1'" C N R 167 TAF "C3'" C N R 168 TAF "O3'" O N N 169 TAF HOP1 H N N 170 TAF HOP2 H N N 171 TAF H6 H N N 172 TAF H3 H N N 173 TAF H71 H N N 174 TAF H72 H N N 175 TAF H73 H N N 176 TAF "H2'" H N N 177 TAF "H5'" H N N 178 TAF "H5''" H N N 179 TAF "H4'" H N N 180 TAF "H1'" H N N 181 TAF "H3'" H N N 182 TAF "HO'3" H N N 183 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 TAF P OP1 sing N N 152 TAF P OP2 sing N N 153 TAF P OP3 doub N N 154 TAF P "O5'" sing N N 155 TAF OP1 HOP1 sing N N 156 TAF OP2 HOP2 sing N N 157 TAF "O5'" "C5'" sing N N 158 TAF N1 C6 sing N N 159 TAF N1 C2 sing N N 160 TAF N1 "C1'" sing N N 161 TAF C6 C5 doub N N 162 TAF C6 H6 sing N N 163 TAF C2 O2 doub N N 164 TAF C2 N3 sing N N 165 TAF N3 C4 sing N N 166 TAF N3 H3 sing N N 167 TAF C4 O4 doub N N 168 TAF C4 C5 sing N N 169 TAF C5 C5M sing N N 170 TAF C5M H71 sing N N 171 TAF C5M H72 sing N N 172 TAF C5M H73 sing N N 173 TAF "F2'" "C2'" sing N N 174 TAF "C2'" "C1'" sing N N 175 TAF "C2'" "C3'" sing N N 176 TAF "C2'" "H2'" sing N N 177 TAF "C5'" "C4'" sing N N 178 TAF "C5'" "H5'" sing N N 179 TAF "C5'" "H5''" sing N N 180 TAF "C4'" "O4'" sing N N 181 TAF "C4'" "C3'" sing N N 182 TAF "C4'" "H4'" sing N N 183 TAF "O4'" "C1'" sing N N 184 TAF "C1'" "H1'" sing N N 185 TAF "C3'" "O3'" sing N N 186 TAF "C3'" "H3'" sing N N 187 TAF "O3'" "HO'3" sing N N 188 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1DPN 'double helix' 1DPN 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.199 -0.130 0.063 4.730 -15.907 2.085 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.161 -0.111 0.112 1.742 -3.756 -2.486 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.168 -0.102 0.155 -0.981 -8.184 0.071 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.175 -0.066 -0.002 13.316 -6.992 -0.256 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.086 -0.120 -0.091 6.010 -15.668 1.076 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B TAF 7 1_555 0.018 -0.091 0.191 4.237 -17.506 5.015 6 A_DA6:TAF19_B A 6 ? B 19 ? 20 1 1 A TAF 7 1_555 B DA 6 1_555 -0.024 -0.103 0.177 -2.052 -18.115 4.738 7 A_TAF7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.058 -0.175 -0.083 -0.644 -14.551 2.115 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.260 -0.131 0.122 -13.161 -9.077 -0.423 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.024 -0.076 0.314 6.501 -3.869 2.568 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.081 -0.125 0.075 6.152 -15.384 0.278 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.667 -0.155 -0.645 9.780 26.139 -3.668 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.385 0.130 3.356 0.058 4.698 34.217 -0.529 0.658 3.343 7.938 -0.097 34.528 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.778 0.568 3.393 0.447 -2.272 41.673 1.044 -1.044 3.366 -3.191 -0.627 41.735 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.392 0.674 3.096 2.509 10.606 25.589 -1.106 1.411 3.074 22.680 -5.365 27.778 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.003 -0.064 3.413 0.279 3.718 40.665 -0.519 0.036 3.394 5.337 -0.400 40.829 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B TAF 7 1_555 0.218 -0.483 3.210 -2.329 0.796 34.157 -0.943 -0.729 3.177 1.353 3.958 34.243 5 AA_DA5DA6:TAF19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B TAF 7 1_555 A TAF 7 1_555 B DA 6 1_555 -0.086 -0.740 3.363 0.028 -2.008 30.138 -0.999 0.172 3.404 -3.856 -0.055 30.203 6 AA_DA6TAF7:DA18TAF19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A TAF 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.079 -0.352 3.123 3.190 -1.367 35.899 -0.383 0.559 3.116 -2.212 -5.160 36.061 7 AA_TAF7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.152 -0.160 3.519 -1.018 -1.123 43.543 -0.100 0.099 3.525 -1.514 1.372 43.568 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.668 0.703 2.992 -3.872 0.849 27.518 1.278 -2.230 2.893 1.772 8.086 27.796 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.255 0.570 3.394 -0.878 -10.118 43.428 1.705 1.574 3.213 -13.455 1.168 44.544 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 1.351 0.334 3.756 3.768 -13.173 30.751 3.071 -1.624 3.466 -23.436 -6.704 33.598 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 1DPN _atom_sites.fract_transf_matrix[1][1] 0.040612 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025169 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015212 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C F MG N O P # loop_