HEADER DNA 27-DEC-99 1DPN TITLE B-DODECAMER CGCGAA(TAF)TCGCG WITH INCORPORATED 2'-DEOXY-2'-FLUORO- TITLE 2 ARABINO-FURANOSYL THYMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS 0.95 A RESOLUTION STRUCTURE, DNA EXPDTA X-RAY DIFFRACTION AUTHOR M.EGLI,V.TERESHKO,M.TEPLOVA,G.MINASOV,A.JOACHIMIAK,R.SANISHVILI, AUTHOR 2 C.M.WEEKS,R.MILLER,M.A.MAIER,H.AN,P.DAN COOK,M.MANOHARAN REVDAT 3 07-FEB-24 1DPN 1 REMARK LINK REVDAT 2 24-FEB-09 1DPN 1 VERSN REVDAT 1 04-APR-00 1DPN 0 JRNL AUTH M.EGLI,V.TERESHKO,M.TEPLOVA,G.MINASOV,A.JOACHIMIAK, JRNL AUTH 2 R.SANISHVILI,C.M.WEEKS,R.MILLER,M.A.MAIER,H.AN,P.DAN COOK, JRNL AUTH 3 M.MANOHARAN JRNL TITL X-RAY CRYSTALLOGRAPHIC ANALYSIS OF THE HYDRATION OF A- AND JRNL TITL 2 B-FORM DNA AT ATOMIC RESOLUTION. JRNL REF BIOPOLYMERS V. 48 234 1998 JRNL REFN ISSN 0006-3525 JRNL PMID 10699842 JRNL DOI 10.1002/(SICI)1097-0282(1998)48:4<234::AID-BIP4>3.0.CO;2-H REMARK 2 REMARK 2 RESOLUTION. 0.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.160 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.160 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 3900 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 39151 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 488 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 ANGLE DISTANCES (A) : 0.005 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : PARKINSON ET AL. REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DPN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-DEC-99. REMARK 100 THE DEPOSITION ID IS D_1000010270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-99 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8152 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39151 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CACODYLATE, MAGNESIUM ACETATE, REMARK 280 SPERMINE, PH 6.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 12.31150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.86850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.86600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.86850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 12.31150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 19.86600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DG B 24 O HOH B 148 1.46 REMARK 500 OP1 DG B 14 O HOH B 192 1.66 REMARK 500 O3' DG A 12 O HOH A 171 2.12 REMARK 500 OP2 DG B 24 O HOH B 148 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 147 O HOH B 128 3645 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 2 C3' DG A 2 C2' -0.062 REMARK 500 DC A 3 C2' DC A 3 C1' -0.071 REMARK 500 DC A 3 O4' DC A 3 C1' 0.122 REMARK 500 DC A 3 O3' DG A 4 P -0.123 REMARK 500 DA A 5 O4' DA A 5 C1' 0.072 REMARK 500 DA A 6 O4' DA A 6 C1' 0.076 REMARK 500 DT A 8 C2' DT A 8 C1' -0.083 REMARK 500 DT A 8 O4' DT A 8 C1' 0.126 REMARK 500 DC A 9 O4' DC A 9 C1' 0.119 REMARK 500 DG A 10 O3' DC A 11 P -0.094 REMARK 500 DC A 11 C2' DC A 11 C1' -0.062 REMARK 500 DC A 11 O4' DC A 11 C1' 0.067 REMARK 500 DC A 11 O4' DC A 11 C1' 0.078 REMARK 500 DG B 14 C2' DG B 14 C1' -0.061 REMARK 500 DC B 15 C3' DC B 15 C2' -0.054 REMARK 500 DA B 17 O4' DA B 17 C1' 0.070 REMARK 500 DA B 18 O4' DA B 18 C1' 0.109 REMARK 500 DT B 20 C2' DT B 20 C1' -0.079 REMARK 500 DT B 20 O4' DT B 20 C1' 0.105 REMARK 500 DC B 21 C2' DC B 21 C1' -0.074 REMARK 500 DC B 21 C2' DC B 21 C1' -0.064 REMARK 500 DC B 21 O4' DC B 21 C1' 0.123 REMARK 500 DC B 21 O4' DC B 21 C1' 0.109 REMARK 500 DG B 22 O3' DC B 23 P -0.118 REMARK 500 DC B 23 C2' DC B 23 C1' -0.060 REMARK 500 DC B 23 O4' DC B 23 C1' 0.070 REMARK 500 DG B 24 O4' DG B 24 C1' 0.102 REMARK 500 DG B 24 O4' DG B 24 C1' 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = -5.2 DEGREES REMARK 500 DC A 3 C1' - O4' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 DC A 3 O4' - C1' - N1 ANGL. DEV. = -6.0 DEGREES REMARK 500 DC A 3 C3' - O3' - P ANGL. DEV. = 15.5 DEGREES REMARK 500 DG A 4 O5' - C5' - C4' ANGL. DEV. = -5.3 DEGREES REMARK 500 DG A 4 P - O5' - C5' ANGL. DEV. = 11.8 DEGREES REMARK 500 DG A 4 C3' - O3' - P ANGL. DEV. = 9.7 DEGREES REMARK 500 DA A 5 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DA A 6 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT A 8 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DT A 8 N1 - C1' - C2' ANGL. DEV. = 10.4 DEGREES REMARK 500 DT A 8 O4' - C1' - N1 ANGL. DEV. = -8.5 DEGREES REMARK 500 DC A 9 N1 - C1' - C2' ANGL. DEV. = 11.2 DEGREES REMARK 500 DC A 9 O4' - C1' - N1 ANGL. DEV. = -9.2 DEGREES REMARK 500 DG A 10 C1' - O4' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG A 10 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DC A 11 O4' - C1' - N1 ANGL. DEV. = -7.7 DEGREES REMARK 500 DC A 11 O4' - C1' - N1 ANGL. DEV. = -8.2 DEGREES REMARK 500 DG A 12 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DC B 13 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC B 13 C3' - O3' - P ANGL. DEV. = 21.8 DEGREES REMARK 500 DG B 14 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DC B 15 O4' - C1' - N1 ANGL. DEV. = -5.7 DEGREES REMARK 500 DG B 16 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DA B 18 O4' - C1' - N9 ANGL. DEV. = -5.2 DEGREES REMARK 500 DT B 20 N1 - C1' - C2' ANGL. DEV. = 8.8 DEGREES REMARK 500 DT B 20 O4' - C1' - N1 ANGL. DEV. = -5.9 DEGREES REMARK 500 DT B 20 C3' - O3' - P ANGL. DEV. = 25.9 DEGREES REMARK 500 DC B 21 O3' - P - OP2 ANGL. DEV. = 7.2 DEGREES REMARK 500 DC B 21 O5' - C5' - C4' ANGL. DEV. = -8.2 DEGREES REMARK 500 DC B 21 O4' - C4' - C3' ANGL. DEV. = 5.6 DEGREES REMARK 500 DC B 21 C1' - O4' - C4' ANGL. DEV. = -7.7 DEGREES REMARK 500 DC B 21 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DC B 21 N1 - C1' - C2' ANGL. DEV. = 11.6 DEGREES REMARK 500 DC B 21 N1 - C1' - C2' ANGL. DEV. = 11.5 DEGREES REMARK 500 DC B 21 O4' - C1' - N1 ANGL. DEV. = -10.0 DEGREES REMARK 500 DC B 21 O4' - C1' - N1 ANGL. DEV. = -10.1 DEGREES REMARK 500 DC B 21 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DG B 22 C3' - O3' - P ANGL. DEV. = 11.7 DEGREES REMARK 500 DC B 23 O4' - C1' - N1 ANGL. DEV. = -5.3 DEGREES REMARK 500 DC B 23 C3' - O3' - P ANGL. DEV. = 9.9 DEGREES REMARK 500 DC B 23 C3' - O3' - P ANGL. DEV. = -8.5 DEGREES REMARK 500 DG B 24 O5' - P - OP2 ANGL. DEV. = -7.6 DEGREES REMARK 500 DG B 24 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DG B 24 O4' - C1' - N9 ANGL. DEV. = -5.6 DEGREES REMARK 500 DG B 24 O4' - C1' - N9 ANGL. DEV. = -5.3 DEGREES REMARK 500 DG B 24 N1 - C6 - O6 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 25 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 26 O REMARK 620 2 HOH A 28 O 90.0 REMARK 620 3 HOH B 27 O 175.8 87.8 REMARK 620 4 HOH B 29 O 89.0 173.7 93.6 REMARK 620 5 HOH B 30 O 94.1 86.9 89.3 87.0 REMARK 620 6 HOH B 31 O 89.7 95.9 87.0 90.3 175.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 38 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 40 O REMARK 620 2 HOH A 43 O 92.6 REMARK 620 3 HOH A 44 O 86.2 176.3 REMARK 620 4 HOH B 39 O 92.6 90.2 86.3 REMARK 620 5 HOH B 41 O 90.6 96.0 87.5 172.9 REMARK 620 6 HOH B 42 O 172.5 88.7 93.0 94.8 81.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 45 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 46 O REMARK 620 2 DA B 17 OP1 177.9 REMARK 620 3 HOH B 47 O 97.4 81.0 REMARK 620 4 HOH B 48 O 105.5 75.7 81.5 REMARK 620 5 HOH B 49 O 92.4 85.9 74.6 151.8 REMARK 620 6 HOH B 50 O 95.6 85.5 156.1 114.1 84.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 32 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TAF B 19 OP1 REMARK 620 2 HOH B 33 O 90.4 REMARK 620 3 HOH B 34 O 177.5 87.7 REMARK 620 4 HOH B 35 O 94.9 92.4 86.7 REMARK 620 5 HOH B 36 O 88.5 178.9 93.4 87.5 REMARK 620 6 HOH B 37 O 90.9 87.1 87.4 174.1 93.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 25 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 32 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 38 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 45 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BD0007 RELATED DB: NDB DBREF 1DPN A 1 12 PDB 1DPN 1DPN 1 12 DBREF 1DPN B 13 24 PDB 1DPN 1DPN 13 24 SEQRES 1 A 12 DC DG DC DG DA DA TAF DT DC DG DC DG SEQRES 1 B 12 DC DG DC DG DA DA TAF DT DC DG DC DG MODRES 1DPN TAF A 7 DT MODRES 1DPN TAF B 19 DT HET TAF A 7 21 HET TAF B 19 21 HET MG A 25 1 HET MG B 32 1 HET MG B 38 1 HET MG B 45 1 HETNAM TAF 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE-5'- HETNAM 2 TAF PHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 TAF 2(C10 H14 F N2 O8 P) FORMUL 3 MG 4(MG 2+) FORMUL 7 HOH *252(H2 O) LINK O3' DA A 6 P TAF A 7 1555 1555 1.61 LINK O3' TAF A 7 P DT A 8 1555 1555 1.60 LINK O3' DA B 18 P TAF B 19 1555 1555 1.57 LINK O3' TAF B 19 P DT B 20 1555 1555 1.58 LINK MG MG A 25 O HOH A 26 1555 1555 2.09 LINK MG MG A 25 O HOH A 28 1555 1555 2.04 LINK MG MG A 25 O HOH B 27 1555 1555 2.05 LINK MG MG A 25 O HOH B 29 1555 1555 2.12 LINK MG MG A 25 O HOH B 30 1555 1555 2.05 LINK MG MG A 25 O HOH B 31 1555 1555 2.06 LINK O HOH A 40 MG MG B 38 1555 1555 2.09 LINK O HOH A 43 MG MG B 38 1555 1555 1.94 LINK O HOH A 44 MG MG B 38 1555 1555 1.95 LINK O HOH A 46 MG MG B 45 4456 1555 2.11 LINK OP1 DA B 17 MG MG B 45 1555 1555 2.11 LINK OP1 TAF B 19 MG MG B 32 3645 1555 2.08 LINK MG MG B 32 O HOH B 33 1555 1555 1.97 LINK MG MG B 32 O HOH B 34 1555 1555 2.14 LINK MG MG B 32 O HOH B 35 1555 1555 2.07 LINK MG MG B 32 O HOH B 36 1555 1555 2.09 LINK MG MG B 32 O HOH B 37 1555 1555 2.00 LINK MG MG B 38 O HOH B 39 1555 1555 2.15 LINK MG MG B 38 O HOH B 41 1555 1555 2.07 LINK MG MG B 38 O HOH B 42 1555 1555 2.05 LINK MG MG B 45 O HOH B 47 1555 1555 2.38 LINK MG MG B 45 O HOH B 48 1555 1555 1.96 LINK MG MG B 45 O HOH B 49 1555 1555 2.69 LINK MG MG B 45 O HOH B 50 1555 1555 2.44 SITE 1 AC1 6 HOH A 26 HOH A 28 HOH B 27 HOH B 29 SITE 2 AC1 6 HOH B 30 HOH B 31 SITE 1 AC2 6 TAF B 19 HOH B 33 HOH B 34 HOH B 35 SITE 2 AC2 6 HOH B 36 HOH B 37 SITE 1 AC3 6 HOH A 40 HOH A 43 HOH A 44 HOH B 39 SITE 2 AC3 6 HOH B 41 HOH B 42 SITE 1 AC4 6 HOH A 46 DA B 17 HOH B 47 HOH B 48 SITE 2 AC4 6 HOH B 49 HOH B 50 CRYST1 24.623 39.732 65.737 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.040612 0.000000 0.000000 0.00000 SCALE2 0.000000 0.025169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015212 0.00000