HEADER LYASE 05-JAN-00 1DQX TITLE CRYSTAL STRUCTURE OF OROTIDINE 5'-PHOSPHATE DECARBOXYLASE COMPLEXED TO TITLE 2 6-HYDROXYURIDINE 5'-PHOSPHATE (BMP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: OROTIDINE 5'-PHOSPHATE DECARBOXYLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 4.1.1.23; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PCDA6022 KEYWDS OROTIDINE 5'PHOSPHATE DECARBOXYLASE, URIDINE 5'PHOSPHATE, UMP, OMP, KEYWDS 2 6-HYDROXYURIDINE 5'-PHOSPHATE, BMP, TIM BARREL, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.V.MILBURN,B.G.MILLER,A.M.HASSELL,R.WOLFENDEN,S.A.SHORT REVDAT 6 07-FEB-24 1DQX 1 REMARK REVDAT 5 03-NOV-21 1DQX 1 REMARK SEQADV REVDAT 4 04-APR-18 1DQX 1 REMARK REVDAT 3 04-OCT-17 1DQX 1 REMARK REVDAT 2 24-FEB-09 1DQX 1 VERSN REVDAT 1 20-MAR-00 1DQX 0 JRNL AUTH B.G.MILLER,A.M.HASSELL,R.WOLFENDEN,M.V.MILBURN,S.A.SHORT JRNL TITL ANATOMY OF A PROFICIENT ENZYME: THE STRUCTURE OF OROTIDINE JRNL TITL 2 5'-MONOPHOSPHATE DECARBOXYLASE IN THE PRESENCE AND ABSENCE JRNL TITL 3 OF A POTENTIAL TRANSITION STATE ANALOG. JRNL REF PROC.NATL.ACAD.SCI.USA V. 97 2011 2000 JRNL REFN ISSN 0027-8424 JRNL PMID 10681417 JRNL DOI 10.1073/PNAS.030409797 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2388386.140 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 42020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2293 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 52.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2233 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 157 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8236 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 501 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.72000 REMARK 3 B22 (A**2) : -7.61000 REMARK 3 B33 (A**2) : 11.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 8.64000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.36 REMARK 3 LOW RESOLUTION CUTOFF (A) : 10.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.37 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.900 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.740 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.770 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.910 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.190 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 87.85 REMARK 3 REMARK 3 NCS MODEL : CONSTRAINED REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : LOCALPARM.XPL REMARK 3 PARAMETER FILE 4 : BSXPI_FIXDBLE.XPL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DQX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-00. REMARK 100 THE DEPOSITION ID IS D_1000010309. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-99 REMARK 200 TEMPERATURE (KELVIN) : 93.0 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42013 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.12200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM PHOSPHATE, POLYETHYLENE GLYCOL REMARK 280 3350, PH 4.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.98500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER FROM MOLECULE A (E BMP REMARK 300 MOLECULE) TWO-FOLD RELATED TO MOLECULE B (F BMP MOLECULE), OR REMARK 300 MOLECULE C (G BMP MOLECULE) TWO-FOLD RELATED TO MOLECULE D (H BMP REMARK 300 MOLECULE) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 153 O HOH B 671 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 183 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 ILE C 183 N - CA - C ANGL. DEV. = -16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 35 69.06 -116.24 REMARK 500 ASN A 85 77.00 60.74 REMARK 500 ALA A 95 67.08 -160.64 REMARK 500 ALA A 107 -128.87 -125.35 REMARK 500 ASP A 196 54.66 -107.87 REMARK 500 ASP A 207 -61.47 -108.63 REMARK 500 ASP A 211 -136.85 38.92 REMARK 500 ALA A 212 -48.94 93.00 REMARK 500 GLN A 266 38.11 -154.03 REMARK 500 SER B 35 73.95 -113.04 REMARK 500 ASN B 85 76.98 61.74 REMARK 500 ALA B 95 66.37 -157.52 REMARK 500 ALA B 107 -124.26 -126.39 REMARK 500 ASP B 196 56.41 -108.39 REMARK 500 ASP B 211 -134.85 34.33 REMARK 500 ALA B 212 -50.91 91.74 REMARK 500 ARG B 235 -18.33 -49.19 REMARK 500 GLN B 266 34.25 -155.03 REMARK 500 SER C 35 68.67 -116.65 REMARK 500 ASN C 85 76.00 64.56 REMARK 500 ALA C 95 65.71 -160.52 REMARK 500 ALA C 107 -124.47 -129.18 REMARK 500 ASP C 196 56.87 -110.77 REMARK 500 ASP C 211 -135.66 41.39 REMARK 500 ALA C 212 -51.24 91.74 REMARK 500 GLN C 266 34.21 -154.76 REMARK 500 SER D 35 71.88 -113.39 REMARK 500 LYS D 42 -73.86 -47.97 REMARK 500 THR D 73 -60.33 -108.38 REMARK 500 ASN D 85 74.36 60.62 REMARK 500 ALA D 95 65.16 -154.46 REMARK 500 ALA D 107 -126.72 -125.94 REMARK 500 ASP D 196 54.00 -107.81 REMARK 500 ASP D 211 -133.83 38.55 REMARK 500 ALA D 212 -47.43 90.35 REMARK 500 GLN D 266 35.08 -153.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 BMP IS A PROPOSED TRANSITION STATE ANALOG REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMP B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMP C 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMP D 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DQW RELATED DB: PDB REMARK 900 1DQW IS THE APO CRYSTAL STRUCTURE OF THE SAME PROTEIN. DBREF 1DQX A 1 267 UNP P03962 PYRF_YEAST 1 267 DBREF 1DQX B 1 267 UNP P03962 PYRF_YEAST 1 267 DBREF 1DQX C 1 267 UNP P03962 PYRF_YEAST 1 267 DBREF 1DQX D 1 267 UNP P03962 PYRF_YEAST 1 267 SEQADV 1DQX HIS A 2 UNP P03962 SER 2 ENGINEERED MUTATION SEQADV 1DQX ASP A 267 UNP P03962 ASN 267 ENGINEERED MUTATION SEQADV 1DQX HIS B 2 UNP P03962 SER 2 ENGINEERED MUTATION SEQADV 1DQX ASP B 267 UNP P03962 ASN 267 ENGINEERED MUTATION SEQADV 1DQX HIS C 2 UNP P03962 SER 2 ENGINEERED MUTATION SEQADV 1DQX ASP C 267 UNP P03962 ASN 267 ENGINEERED MUTATION SEQADV 1DQX HIS D 2 UNP P03962 SER 2 ENGINEERED MUTATION SEQADV 1DQX ASP D 267 UNP P03962 ASN 267 ENGINEERED MUTATION SEQRES 1 A 267 MET HIS LYS ALA THR TYR LYS GLU ARG ALA ALA THR HIS SEQRES 2 A 267 PRO SER PRO VAL ALA ALA LYS LEU PHE ASN ILE MET HIS SEQRES 3 A 267 GLU LYS GLN THR ASN LEU CYS ALA SER LEU ASP VAL ARG SEQRES 4 A 267 THR THR LYS GLU LEU LEU GLU LEU VAL GLU ALA LEU GLY SEQRES 5 A 267 PRO LYS ILE CYS LEU LEU LYS THR HIS VAL ASP ILE LEU SEQRES 6 A 267 THR ASP PHE SER MET GLU GLY THR VAL LYS PRO LEU LYS SEQRES 7 A 267 ALA LEU SER ALA LYS TYR ASN PHE LEU LEU PHE GLU ASP SEQRES 8 A 267 ARG LYS PHE ALA ASP ILE GLY ASN THR VAL LYS LEU GLN SEQRES 9 A 267 TYR SER ALA GLY VAL TYR ARG ILE ALA GLU TRP ALA ASP SEQRES 10 A 267 ILE THR ASN ALA HIS GLY VAL VAL GLY PRO GLY ILE VAL SEQRES 11 A 267 SER GLY LEU LYS GLN ALA ALA GLU GLU VAL THR LYS GLU SEQRES 12 A 267 PRO ARG GLY LEU LEU MET LEU ALA GLU LEU SER CYS LYS SEQRES 13 A 267 GLY SER LEU SER THR GLY GLU TYR THR LYS GLY THR VAL SEQRES 14 A 267 ASP ILE ALA LYS SER ASP LYS ASP PHE VAL ILE GLY PHE SEQRES 15 A 267 ILE ALA GLN ARG ASP MET GLY GLY ARG ASP GLU GLY TYR SEQRES 16 A 267 ASP TRP LEU ILE MET THR PRO GLY VAL GLY LEU ASP ASP SEQRES 17 A 267 LYS GLY ASP ALA LEU GLY GLN GLN TYR ARG THR VAL ASP SEQRES 18 A 267 ASP VAL VAL SER THR GLY SER ASP ILE ILE ILE VAL GLY SEQRES 19 A 267 ARG GLY LEU PHE ALA LYS GLY ARG ASP ALA LYS VAL GLU SEQRES 20 A 267 GLY GLU ARG TYR ARG LYS ALA GLY TRP GLU ALA TYR LEU SEQRES 21 A 267 ARG ARG CYS GLY GLN GLN ASP SEQRES 1 B 267 MET HIS LYS ALA THR TYR LYS GLU ARG ALA ALA THR HIS SEQRES 2 B 267 PRO SER PRO VAL ALA ALA LYS LEU PHE ASN ILE MET HIS SEQRES 3 B 267 GLU LYS GLN THR ASN LEU CYS ALA SER LEU ASP VAL ARG SEQRES 4 B 267 THR THR LYS GLU LEU LEU GLU LEU VAL GLU ALA LEU GLY SEQRES 5 B 267 PRO LYS ILE CYS LEU LEU LYS THR HIS VAL ASP ILE LEU SEQRES 6 B 267 THR ASP PHE SER MET GLU GLY THR VAL LYS PRO LEU LYS SEQRES 7 B 267 ALA LEU SER ALA LYS TYR ASN PHE LEU LEU PHE GLU ASP SEQRES 8 B 267 ARG LYS PHE ALA ASP ILE GLY ASN THR VAL LYS LEU GLN SEQRES 9 B 267 TYR SER ALA GLY VAL TYR ARG ILE ALA GLU TRP ALA ASP SEQRES 10 B 267 ILE THR ASN ALA HIS GLY VAL VAL GLY PRO GLY ILE VAL SEQRES 11 B 267 SER GLY LEU LYS GLN ALA ALA GLU GLU VAL THR LYS GLU SEQRES 12 B 267 PRO ARG GLY LEU LEU MET LEU ALA GLU LEU SER CYS LYS SEQRES 13 B 267 GLY SER LEU SER THR GLY GLU TYR THR LYS GLY THR VAL SEQRES 14 B 267 ASP ILE ALA LYS SER ASP LYS ASP PHE VAL ILE GLY PHE SEQRES 15 B 267 ILE ALA GLN ARG ASP MET GLY GLY ARG ASP GLU GLY TYR SEQRES 16 B 267 ASP TRP LEU ILE MET THR PRO GLY VAL GLY LEU ASP ASP SEQRES 17 B 267 LYS GLY ASP ALA LEU GLY GLN GLN TYR ARG THR VAL ASP SEQRES 18 B 267 ASP VAL VAL SER THR GLY SER ASP ILE ILE ILE VAL GLY SEQRES 19 B 267 ARG GLY LEU PHE ALA LYS GLY ARG ASP ALA LYS VAL GLU SEQRES 20 B 267 GLY GLU ARG TYR ARG LYS ALA GLY TRP GLU ALA TYR LEU SEQRES 21 B 267 ARG ARG CYS GLY GLN GLN ASP SEQRES 1 C 267 MET HIS LYS ALA THR TYR LYS GLU ARG ALA ALA THR HIS SEQRES 2 C 267 PRO SER PRO VAL ALA ALA LYS LEU PHE ASN ILE MET HIS SEQRES 3 C 267 GLU LYS GLN THR ASN LEU CYS ALA SER LEU ASP VAL ARG SEQRES 4 C 267 THR THR LYS GLU LEU LEU GLU LEU VAL GLU ALA LEU GLY SEQRES 5 C 267 PRO LYS ILE CYS LEU LEU LYS THR HIS VAL ASP ILE LEU SEQRES 6 C 267 THR ASP PHE SER MET GLU GLY THR VAL LYS PRO LEU LYS SEQRES 7 C 267 ALA LEU SER ALA LYS TYR ASN PHE LEU LEU PHE GLU ASP SEQRES 8 C 267 ARG LYS PHE ALA ASP ILE GLY ASN THR VAL LYS LEU GLN SEQRES 9 C 267 TYR SER ALA GLY VAL TYR ARG ILE ALA GLU TRP ALA ASP SEQRES 10 C 267 ILE THR ASN ALA HIS GLY VAL VAL GLY PRO GLY ILE VAL SEQRES 11 C 267 SER GLY LEU LYS GLN ALA ALA GLU GLU VAL THR LYS GLU SEQRES 12 C 267 PRO ARG GLY LEU LEU MET LEU ALA GLU LEU SER CYS LYS SEQRES 13 C 267 GLY SER LEU SER THR GLY GLU TYR THR LYS GLY THR VAL SEQRES 14 C 267 ASP ILE ALA LYS SER ASP LYS ASP PHE VAL ILE GLY PHE SEQRES 15 C 267 ILE ALA GLN ARG ASP MET GLY GLY ARG ASP GLU GLY TYR SEQRES 16 C 267 ASP TRP LEU ILE MET THR PRO GLY VAL GLY LEU ASP ASP SEQRES 17 C 267 LYS GLY ASP ALA LEU GLY GLN GLN TYR ARG THR VAL ASP SEQRES 18 C 267 ASP VAL VAL SER THR GLY SER ASP ILE ILE ILE VAL GLY SEQRES 19 C 267 ARG GLY LEU PHE ALA LYS GLY ARG ASP ALA LYS VAL GLU SEQRES 20 C 267 GLY GLU ARG TYR ARG LYS ALA GLY TRP GLU ALA TYR LEU SEQRES 21 C 267 ARG ARG CYS GLY GLN GLN ASP SEQRES 1 D 267 MET HIS LYS ALA THR TYR LYS GLU ARG ALA ALA THR HIS SEQRES 2 D 267 PRO SER PRO VAL ALA ALA LYS LEU PHE ASN ILE MET HIS SEQRES 3 D 267 GLU LYS GLN THR ASN LEU CYS ALA SER LEU ASP VAL ARG SEQRES 4 D 267 THR THR LYS GLU LEU LEU GLU LEU VAL GLU ALA LEU GLY SEQRES 5 D 267 PRO LYS ILE CYS LEU LEU LYS THR HIS VAL ASP ILE LEU SEQRES 6 D 267 THR ASP PHE SER MET GLU GLY THR VAL LYS PRO LEU LYS SEQRES 7 D 267 ALA LEU SER ALA LYS TYR ASN PHE LEU LEU PHE GLU ASP SEQRES 8 D 267 ARG LYS PHE ALA ASP ILE GLY ASN THR VAL LYS LEU GLN SEQRES 9 D 267 TYR SER ALA GLY VAL TYR ARG ILE ALA GLU TRP ALA ASP SEQRES 10 D 267 ILE THR ASN ALA HIS GLY VAL VAL GLY PRO GLY ILE VAL SEQRES 11 D 267 SER GLY LEU LYS GLN ALA ALA GLU GLU VAL THR LYS GLU SEQRES 12 D 267 PRO ARG GLY LEU LEU MET LEU ALA GLU LEU SER CYS LYS SEQRES 13 D 267 GLY SER LEU SER THR GLY GLU TYR THR LYS GLY THR VAL SEQRES 14 D 267 ASP ILE ALA LYS SER ASP LYS ASP PHE VAL ILE GLY PHE SEQRES 15 D 267 ILE ALA GLN ARG ASP MET GLY GLY ARG ASP GLU GLY TYR SEQRES 16 D 267 ASP TRP LEU ILE MET THR PRO GLY VAL GLY LEU ASP ASP SEQRES 17 D 267 LYS GLY ASP ALA LEU GLY GLN GLN TYR ARG THR VAL ASP SEQRES 18 D 267 ASP VAL VAL SER THR GLY SER ASP ILE ILE ILE VAL GLY SEQRES 19 D 267 ARG GLY LEU PHE ALA LYS GLY ARG ASP ALA LYS VAL GLU SEQRES 20 D 267 GLY GLU ARG TYR ARG LYS ALA GLY TRP GLU ALA TYR LEU SEQRES 21 D 267 ARG ARG CYS GLY GLN GLN ASP HET BMP A 601 22 HET BMP B 602 22 HET BMP C 603 22 HET BMP D 604 22 HETNAM BMP 6-HYDROXYURIDINE-5'-PHOSPHATE FORMUL 5 BMP 4(C9 H13 N2 O10 P) FORMUL 9 HOH *501(H2 O) HELIX 1 1 THR A 5 HIS A 13 1 9 HELIX 2 2 SER A 15 GLN A 29 1 15 HELIX 3 3 THR A 40 GLY A 52 1 13 HELIX 4 4 PRO A 53 ILE A 55 5 3 HELIX 5 5 HIS A 61 LEU A 65 5 5 HELIX 6 6 THR A 73 ASN A 85 1 13 HELIX 7 7 ILE A 97 ALA A 107 1 11 HELIX 8 8 ARG A 111 TRP A 115 5 5 HELIX 9 9 PRO A 127 GLU A 139 1 13 HELIX 10 10 THR A 161 LYS A 173 1 13 HELIX 11 11 GLY A 190 GLY A 194 5 5 HELIX 12 12 THR A 219 THR A 226 1 8 HELIX 13 13 GLY A 234 ALA A 239 1 6 HELIX 14 14 ASP A 243 CYS A 263 1 21 HELIX 15 15 THR B 5 HIS B 13 1 9 HELIX 16 16 SER B 15 GLN B 29 1 15 HELIX 17 17 THR B 40 GLY B 52 1 13 HELIX 18 18 PRO B 53 ILE B 55 5 3 HELIX 19 19 HIS B 61 LEU B 65 5 5 HELIX 20 20 THR B 73 ASN B 85 1 13 HELIX 21 21 ILE B 97 ALA B 107 1 11 HELIX 22 22 ARG B 111 ALA B 116 1 6 HELIX 23 23 VAL B 124 GLY B 126 5 3 HELIX 24 24 PRO B 127 THR B 141 1 15 HELIX 25 25 THR B 161 LYS B 173 1 13 HELIX 26 26 GLY B 190 GLY B 194 5 5 HELIX 27 27 THR B 219 SER B 225 1 7 HELIX 28 28 GLY B 234 ALA B 239 1 6 HELIX 29 29 ASP B 243 CYS B 263 1 21 HELIX 30 30 THR C 5 HIS C 13 1 9 HELIX 31 31 SER C 15 GLN C 29 1 15 HELIX 32 32 THR C 40 GLY C 52 1 13 HELIX 33 33 PRO C 53 ILE C 55 5 3 HELIX 34 34 HIS C 61 LEU C 65 5 5 HELIX 35 35 THR C 73 ASN C 85 1 13 HELIX 36 36 ILE C 97 ALA C 107 1 11 HELIX 37 37 ARG C 111 ALA C 116 1 6 HELIX 38 38 PRO C 127 GLU C 139 1 13 HELIX 39 39 THR C 161 SER C 174 1 14 HELIX 40 40 GLY C 190 GLY C 194 5 5 HELIX 41 41 THR C 219 THR C 226 1 8 HELIX 42 42 GLY C 234 ALA C 239 1 6 HELIX 43 43 ASP C 243 CYS C 263 1 21 HELIX 44 44 THR D 5 HIS D 13 1 9 HELIX 45 45 SER D 15 GLN D 29 1 15 HELIX 46 46 THR D 40 GLY D 52 1 13 HELIX 47 47 PRO D 53 ILE D 55 5 3 HELIX 48 48 HIS D 61 LEU D 65 5 5 HELIX 49 49 THR D 73 ASN D 85 1 13 HELIX 50 50 ILE D 97 ALA D 107 1 11 HELIX 51 51 ARG D 111 ALA D 116 1 6 HELIX 52 52 VAL D 124 GLY D 126 5 3 HELIX 53 53 PRO D 127 GLU D 139 1 13 HELIX 54 54 THR D 161 LYS D 173 1 13 HELIX 55 55 GLY D 190 GLY D 194 5 5 HELIX 56 56 THR D 219 SER D 225 1 7 HELIX 57 57 GLY D 234 ALA D 239 1 6 HELIX 58 58 ASP D 243 CYS D 263 1 21 SHEET 1 A 9 LEU A 32 ALA A 34 0 SHEET 2 A 9 LEU A 57 THR A 60 1 O LEU A 57 N ALA A 34 SHEET 3 A 9 LEU A 87 GLU A 90 1 O LEU A 87 N LEU A 58 SHEET 4 A 9 ILE A 118 HIS A 122 1 N ILE A 118 O LEU A 88 SHEET 5 A 9 GLY A 146 LEU A 150 1 O GLY A 146 N THR A 119 SHEET 6 A 9 VAL A 179 ILE A 183 1 N ILE A 180 O LEU A 147 SHEET 7 A 9 LEU A 198 THR A 201 1 O LEU A 198 N PHE A 182 SHEET 8 A 9 ILE A 230 VAL A 233 1 O ILE A 230 N THR A 201 SHEET 9 A 9 LEU A 32 ALA A 34 1 N CYS A 33 O ILE A 231 SHEET 1 B 9 LEU B 32 ALA B 34 0 SHEET 2 B 9 LEU B 57 THR B 60 1 O LEU B 57 N ALA B 34 SHEET 3 B 9 LEU B 87 GLU B 90 1 O LEU B 87 N LEU B 58 SHEET 4 B 9 ILE B 118 HIS B 122 1 N ILE B 118 O LEU B 88 SHEET 5 B 9 GLY B 146 LEU B 150 1 O GLY B 146 N THR B 119 SHEET 6 B 9 VAL B 179 ILE B 183 1 N ILE B 180 O LEU B 147 SHEET 7 B 9 LEU B 198 THR B 201 1 O LEU B 198 N PHE B 182 SHEET 8 B 9 ILE B 230 VAL B 233 1 O ILE B 230 N THR B 201 SHEET 9 B 9 LEU B 32 ALA B 34 1 N CYS B 33 O ILE B 231 SHEET 1 C 9 LEU C 32 ALA C 34 0 SHEET 2 C 9 LEU C 57 THR C 60 1 O LEU C 57 N ALA C 34 SHEET 3 C 9 LEU C 87 PHE C 94 1 O LEU C 87 N LEU C 58 SHEET 4 C 9 ILE C 118 HIS C 122 1 N ILE C 118 O LEU C 88 SHEET 5 C 9 GLY C 146 LEU C 150 1 O GLY C 146 N THR C 119 SHEET 6 C 9 VAL C 179 ILE C 183 1 N ILE C 180 O LEU C 147 SHEET 7 C 9 LEU C 198 THR C 201 1 O LEU C 198 N PHE C 182 SHEET 8 C 9 ILE C 230 VAL C 233 1 O ILE C 230 N THR C 201 SHEET 9 C 9 LEU C 32 ALA C 34 1 N CYS C 33 O ILE C 231 SHEET 1 D 9 LEU D 32 ALA D 34 0 SHEET 2 D 9 LEU D 57 THR D 60 1 O LEU D 57 N ALA D 34 SHEET 3 D 9 LEU D 87 GLU D 90 1 O LEU D 87 N LEU D 58 SHEET 4 D 9 ILE D 118 HIS D 122 1 N ILE D 118 O LEU D 88 SHEET 5 D 9 GLY D 146 LEU D 150 1 O GLY D 146 N THR D 119 SHEET 6 D 9 VAL D 179 ILE D 183 1 N ILE D 180 O LEU D 147 SHEET 7 D 9 LEU D 198 THR D 201 1 O LEU D 198 N PHE D 182 SHEET 8 D 9 ILE D 230 VAL D 233 1 O ILE D 230 N THR D 201 SHEET 9 D 9 LEU D 32 ALA D 34 1 N CYS D 33 O ILE D 231 SITE 1 AC1 18 SER A 35 ASP A 37 LYS A 59 HIS A 61 SITE 2 AC1 18 ASP A 91 LYS A 93 LEU A 153 SER A 154 SITE 3 AC1 18 PRO A 202 GLN A 215 TYR A 217 GLY A 234 SITE 4 AC1 18 ARG A 235 HOH A 625 HOH A 628 ASP B 96 SITE 5 AC1 18 ILE B 97 THR B 100 SITE 1 AC2 18 ASP A 96 ILE A 97 THR A 100 SER B 35 SITE 2 AC2 18 ASP B 37 LYS B 59 HIS B 61 ASP B 91 SITE 3 AC2 18 LYS B 93 LEU B 153 SER B 154 PRO B 202 SITE 4 AC2 18 GLN B 215 TYR B 217 GLY B 234 ARG B 235 SITE 5 AC2 18 HOH B 630 HOH B 677 SITE 1 AC3 18 SER C 35 ASP C 37 LYS C 59 HIS C 61 SITE 2 AC3 18 ASP C 91 LYS C 93 LEU C 153 SER C 154 SITE 3 AC3 18 PRO C 202 GLN C 215 TYR C 217 GLY C 234 SITE 4 AC3 18 ARG C 235 HOH C 622 HOH C 637 ASP D 96 SITE 5 AC3 18 ILE D 97 THR D 100 SITE 1 AC4 17 ASP C 96 ILE C 97 THR C 100 SER D 35 SITE 2 AC4 17 ASP D 37 LYS D 59 HIS D 61 ASP D 91 SITE 3 AC4 17 LYS D 93 LEU D 153 SER D 154 PRO D 202 SITE 4 AC4 17 GLN D 215 TYR D 217 GLY D 234 ARG D 235 SITE 5 AC4 17 HOH D 609 CRYST1 79.890 79.970 98.190 90.00 108.59 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012517 0.000000 0.004210 0.00000 SCALE2 0.000000 0.012505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010745 0.00000