data_1DUC # _entry.id 1DUC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DUC pdb_00001duc 10.2210/pdb1duc/pdb WWPDB D_1000172940 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DUC _pdbx_database_status.recvd_initial_deposition_date 1997-11-29 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dauter, Z.' 1 'Persson, R.' 2 'Rosengren, A.M.' 3 'Nyman, P.O.' 4 'Wilson, K.S.' 5 'Cedergren-Zeppezauer, E.S.' 6 # _citation.id primary _citation.title 'Crystal structure of dUTPase from equine infectious anaemia virus; active site metal binding in a substrate analogue complex.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 285 _citation.page_first 655 _citation.page_last 673 _citation.year 1999 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9878436 _citation.pdbx_database_id_DOI 10.1006/jmbi.1998.2332 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dauter, Z.' 1 ? primary 'Persson, R.' 2 ? primary 'Rosengren, A.M.' 3 ? primary 'Nyman, P.O.' 4 ? primary 'Wilson, K.S.' 5 ? primary 'Cedergren-Zeppezauer, E.S.' 6 ? # _cell.entry_id 1DUC _cell.length_a 106.700 _cell.length_b 106.700 _cell.length_c 106.700 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DUC _symmetry.space_group_name_H-M 'P 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE ; 14784.834 1 3.6.1.23 ? ? 'COMPLEX WITH DUDP AND STRONTIUM(II) ION' 2 non-polymer syn 'STRONTIUM ION' 87.620 1 ? ? ? ? 3 non-polymer syn "DEOXYURIDINE-5'-DIPHOSPHATE" 388.162 1 ? ? ? ? 4 water nat water 18.015 80 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DUTPASE, DUTP PYROPHOSPHATASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MLAYQGTQIKEKRDEDAGFDLCVPYDIMIPVSDTKIIPTDVKIQVPPNSFGWVTGKSSMAKQGLLINGGIIDEGYTGEIQ VICTNIGKSNIKLIEGQKFAQLIILQHHSNSRQPWDENKISQRGDKGFGSTGVF ; _entity_poly.pdbx_seq_one_letter_code_can ;MLAYQGTQIKEKRDEDAGFDLCVPYDIMIPVSDTKIIPTDVKIQVPPNSFGWVTGKSSMAKQGLLINGGIIDEGYTGEIQ VICTNIGKSNIKLIEGQKFAQLIILQHHSNSRQPWDENKISQRGDKGFGSTGVF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 ALA n 1 4 TYR n 1 5 GLN n 1 6 GLY n 1 7 THR n 1 8 GLN n 1 9 ILE n 1 10 LYS n 1 11 GLU n 1 12 LYS n 1 13 ARG n 1 14 ASP n 1 15 GLU n 1 16 ASP n 1 17 ALA n 1 18 GLY n 1 19 PHE n 1 20 ASP n 1 21 LEU n 1 22 CYS n 1 23 VAL n 1 24 PRO n 1 25 TYR n 1 26 ASP n 1 27 ILE n 1 28 MET n 1 29 ILE n 1 30 PRO n 1 31 VAL n 1 32 SER n 1 33 ASP n 1 34 THR n 1 35 LYS n 1 36 ILE n 1 37 ILE n 1 38 PRO n 1 39 THR n 1 40 ASP n 1 41 VAL n 1 42 LYS n 1 43 ILE n 1 44 GLN n 1 45 VAL n 1 46 PRO n 1 47 PRO n 1 48 ASN n 1 49 SER n 1 50 PHE n 1 51 GLY n 1 52 TRP n 1 53 VAL n 1 54 THR n 1 55 GLY n 1 56 LYS n 1 57 SER n 1 58 SER n 1 59 MET n 1 60 ALA n 1 61 LYS n 1 62 GLN n 1 63 GLY n 1 64 LEU n 1 65 LEU n 1 66 ILE n 1 67 ASN n 1 68 GLY n 1 69 GLY n 1 70 ILE n 1 71 ILE n 1 72 ASP n 1 73 GLU n 1 74 GLY n 1 75 TYR n 1 76 THR n 1 77 GLY n 1 78 GLU n 1 79 ILE n 1 80 GLN n 1 81 VAL n 1 82 ILE n 1 83 CYS n 1 84 THR n 1 85 ASN n 1 86 ILE n 1 87 GLY n 1 88 LYS n 1 89 SER n 1 90 ASN n 1 91 ILE n 1 92 LYS n 1 93 LEU n 1 94 ILE n 1 95 GLU n 1 96 GLY n 1 97 GLN n 1 98 LYS n 1 99 PHE n 1 100 ALA n 1 101 GLN n 1 102 LEU n 1 103 ILE n 1 104 ILE n 1 105 LEU n 1 106 GLN n 1 107 HIS n 1 108 HIS n 1 109 SER n 1 110 ASN n 1 111 SER n 1 112 ARG n 1 113 GLN n 1 114 PRO n 1 115 TRP n 1 116 ASP n 1 117 GLU n 1 118 ASN n 1 119 LYS n 1 120 ILE n 1 121 SER n 1 122 GLN n 1 123 ARG n 1 124 GLY n 1 125 ASP n 1 126 LYS n 1 127 GLY n 1 128 PHE n 1 129 GLY n 1 130 SER n 1 131 THR n 1 132 GLY n 1 133 VAL n 1 134 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Lentivirus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Equine infectious anemia virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11665 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line BL21 _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) PLYSS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET-3A/EDU _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_EIAV9 _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P11204 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;TAWTFLKAMQKCSKKREARGSREAPETNFPDTTEESAQQICCTRDSSDSKSVPRSERNKKGIQCQGEGSSRGSQPGQFVG VTYNLEKRPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQGTGIIGVGGNVETFSTPVTIKKKGRHIKTRM LVADIPVTILGRDILQDLGAKLVLAQLSKEIKFRKIELKEGTMGPKIPQWPLTKEKLEGAKEIVQRLLSEGKISEASDNN PYNSPIFVIKKRSGKWRLLQDLRELNKTVQVGTEISRGLPHPGGLIKCKHMTVLDIGDAYFTIPLDPEFRPYTAFTIPSI NHQEPDKRYVWNCLPQGFVLSPYIYQKTLQEILQPFRERYPEVQLYQYMDDLFVGSNGSKKQHKELIIELRAILLEEGFE TPDDKLQEVPPYSWLGYQLCPENWKVQKMQLDMVKNPTLNDVQKLMGNITWMSSGVPGLTVKHIAATTKGCLELNQKVIW TEEAQKELEENNEKIKNAQGLQYYNPEEEMLCEVEITKNYEATYVIKQSQGILWAGKKIMKANKGWSTVKNLMLLLQHVA TESITRVGKCPTFKVPFTKEQVMWEMQKGWYYSWLPEIVYTHQVVHDDWRMKLVEEPTSGITIYTDGGKQNGEGIAAYVT SNGRTKQKRLGPVTHQVAERMAIQMALEDTRDKQVNIVTDSYYCWKNITEGLGLEGPQSPWWPIIQNIREKEIVYFAWVP GHKGICGNQLADEAAKIKEEIMLAYQGTQIKEKRDEDAGFDLCVPYDIMIPVSDTKIIPTDVKIQVPPNSFGWVTGKSSM AKQGLLINGGIIDEGYTGEIQVICTNIGKSNIKLIEGQKFAQLIILQHHSNSRQPWDENKISQRGDKGFGSTGVFWVENI QEAQDEHENWHTSPKILARNYKIPLTVAKQITQECPHCTKQGSGPAGCVMRSPNHWQADCTHLDNKIILTFVESNSGYIH ATLLSKENALCTSLAILEWARLFSPKSLHTDNGTNFVAEPVVNLLKFLKIAHTTGIPYHPESQGIVERANRTLKEKIQSH RDNTQTLEAALQLALITCNKGRESMGGQTPWEVFITNQAQVIHEKLLLQQAQSSKKFCFYKIPGEHDWKGPTRVLWKGDG AVVVNDEGKGIIAVPLTRTKLLIKPN ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1DUC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 134 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P11204 _struct_ref_seq.db_align_beg 742 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 875 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 134 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DUD non-polymer . "DEOXYURIDINE-5'-DIPHOSPHATE" ? 'C9 H14 N2 O11 P2' 388.162 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1DUC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.43 _exptl_crystal.density_percent_sol 64. _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;DROP: 3.0 MG/ML PROTEIN, 0.05 M IMIDAZOL MALATE BUFFER, PH 7.0, 21% PEG 400, 20 MM SRCL2, 5 MM DUDP; WELL: 0.1 M IMIDAZOLE MALATE BUFFER, PH 7.0, 42% PEG 400 ; # _diffrn.id 1 _diffrn.ambient_temp 277 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1995-10 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.885 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7B' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline BW7B _diffrn_source.pdbx_wavelength 0.885 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DUC _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 25.0 _reflns.d_resolution_high 2.05 _reflns.number_obs 13598 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.1240000 _reflns.pdbx_Rsym_value 0.1240000 _reflns.pdbx_netI_over_sigmaI 17.7 _reflns.B_iso_Wilson_estimate 22.9 _reflns.pdbx_redundancy 10.5 _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.05 _reflns_shell.d_res_low 2.09 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.6860000 _reflns_shell.pdbx_Rsym_value 0.6860000 _reflns_shell.meanI_over_sigI_obs 3.8 _reflns_shell.pdbx_redundancy 10.0 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1DUC _refine.ls_number_reflns_obs 13538 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 2.05 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.168 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.167 _refine.ls_R_factor_R_free 0.201 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5. _refine.ls_number_reflns_R_free 668 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 27.9 _refine.aniso_B[1][1] 27.9 _refine.aniso_B[2][2] 27.9 _refine.aniso_B[3][3] 27.9 _refine.aniso_B[1][2] 0.0 _refine.aniso_B[1][3] 0.0 _refine.aniso_B[2][3] 0.0 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details 'COORDINATE ERROR ACCORDING TO CRUICKSHANK = 0.11 A' _refine.pdbx_starting_model 'PDB ENTRY 1DUP' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1DUC _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 20.0 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 919 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 80 _refine_hist.number_atoms_total 1024 _refine_hist.d_res_high 2.05 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.019 0.020 ? ? 'X-RAY DIFFRACTION' ? p_angle_d 0.040 0.040 ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d 0.041 0.050 ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it 2.9 3.0 ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it 3.8 5.0 ? ? 'X-RAY DIFFRACTION' ? p_scbond_it 6.1 6.0 ? ? 'X-RAY DIFFRACTION' ? p_scangle_it 7.8 8.0 ? ? 'X-RAY DIFFRACTION' ? p_plane_restr 0.011 0.020 ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr 0.216 0.150 ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd 0.19 0.30 ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd 0.26 0.30 ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd 0.15 0.30 ? ? 'X-RAY DIFFRACTION' ? p_planar_tor 6.1 7.0 ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor 13.4 15.0 ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor 26.7 20.0 ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1DUC _struct.title 'EIAV DUTPASE DUDP/STRONTIUM COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DUC _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, DUTPASE, EIAV, TRIMERIC ENZYME, INHIBITOR COMPLEX, ASPARTYL PROTEASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id SER _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 57 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLN _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 62 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id SER _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 57 _struct_conf.end_auth_comp_id GLN _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 62 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C DUD . O1A ? ? ? 1_555 B SR . SR ? ? A DUD 201 A SR 202 1_555 ? ? ? ? ? ? ? 2.529 ? ? metalc2 metalc ? ? C DUD . O2B ? ? ? 1_555 B SR . SR ? ? A DUD 201 A SR 202 1_555 ? ? ? ? ? ? ? 2.704 ? ? metalc3 metalc ? ? B SR . SR ? ? ? 1_555 D HOH . O ? ? A SR 202 A HOH 203 1_555 ? ? ? ? ? ? ? 2.706 ? ? metalc4 metalc ? ? B SR . SR ? ? ? 1_555 D HOH . O ? ? A SR 202 A HOH 204 9_555 ? ? ? ? ? ? ? 2.689 ? ? metalc5 metalc ? ? B SR . SR ? ? ? 1_555 D HOH . O ? ? A SR 202 A HOH 209 1_555 ? ? ? ? ? ? ? 2.689 ? ? metalc6 metalc ? ? B SR . SR ? ? ? 1_555 D HOH . O ? ? A SR 202 A HOH 214 9_555 ? ? ? ? ? ? ? 2.645 ? ? metalc7 metalc ? ? B SR . SR ? ? ? 1_555 D HOH . O ? ? A SR 202 A HOH 215 9_555 ? ? ? ? ? ? ? 2.726 ? ? metalc8 metalc ? ? B SR . SR ? ? ? 1_555 D HOH . O ? ? A SR 202 A HOH 223 1_555 ? ? ? ? ? ? ? 2.739 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details S1 ? 4 ? S2 ? 4 ? S3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense S1 1 2 ? anti-parallel S1 2 3 ? anti-parallel S1 3 4 ? anti-parallel S2 1 2 ? anti-parallel S2 2 3 ? anti-parallel S2 3 4 ? anti-parallel S3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id S1 1 ALA A 3 ? GLN A 5 ? ALA A 3 GLN A 5 S1 2 ASP A 33 ? GLN A 44 ? ASP A 33 GLN A 44 S1 3 GLN A 80 ? ILE A 86 ? GLN A 80 ILE A 86 S1 4 GLY A 63 ? ASN A 67 ? GLY A 63 ASN A 67 S2 1 PHE A 19 ? VAL A 23 ? PHE A 19 VAL A 23 S2 2 GLN A 97 ? HIS A 107 ? GLN A 97 HIS A 107 S2 3 ASN A 48 ? THR A 54 ? ASN A 48 THR A 54 S2 4 GLY A 69 ? ILE A 71 ? GLY A 69 ILE A 71 S3 1 ILE A 27 ? ILE A 29 ? ILE A 27 ILE A 29 S3 2 ILE A 91 ? LEU A 93 ? ILE A 91 LEU A 93 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id S1 1 2 N ALA A 3 ? N ALA A 3 O GLN A 44 ? O GLN A 44 S1 2 3 O ILE A 37 ? O ILE A 37 N VAL A 81 ? N VAL A 81 S1 3 4 N ILE A 86 ? N ILE A 86 O GLY A 63 ? O GLY A 63 S2 1 2 N VAL A 23 ? N VAL A 23 O GLN A 97 ? O GLN A 97 S2 2 3 N HIS A 107 ? N HIS A 107 O ASN A 48 ? O ASN A 48 S2 3 4 N GLY A 51 ? N GLY A 51 O ILE A 71 ? O ILE A 71 S3 1 2 O ILE A 29 ? O ILE A 29 N ILE A 91 ? N ILE A 91 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SR 202 ? 7 'BINDING SITE FOR RESIDUE SR A 202' AC2 Software A DUD 201 ? 18 'BINDING SITE FOR RESIDUE DUD A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 DUD C . ? DUD A 201 . ? 1_555 ? 2 AC1 7 HOH D . ? HOH A 203 . ? 1_555 ? 3 AC1 7 HOH D . ? HOH A 204 . ? 9_555 ? 4 AC1 7 HOH D . ? HOH A 209 . ? 1_555 ? 5 AC1 7 HOH D . ? HOH A 214 . ? 9_555 ? 6 AC1 7 HOH D . ? HOH A 215 . ? 9_555 ? 7 AC1 7 HOH D . ? HOH A 223 . ? 1_555 ? 8 AC2 18 LYS A 56 ? LYS A 56 . ? 9_555 ? 9 AC2 18 SER A 57 ? SER A 57 . ? 9_555 ? 10 AC2 18 SER A 58 ? SER A 58 . ? 9_555 ? 11 AC2 18 GLY A 69 ? GLY A 69 . ? 1_555 ? 12 AC2 18 ILE A 70 ? ILE A 70 . ? 1_555 ? 13 AC2 18 ILE A 71 ? ILE A 71 . ? 1_555 ? 14 AC2 18 ASP A 72 ? ASP A 72 . ? 1_555 ? 15 AC2 18 TYR A 75 ? TYR A 75 . ? 1_555 ? 16 AC2 18 GLN A 80 ? GLN A 80 . ? 1_555 ? 17 AC2 18 ILE A 82 ? ILE A 82 . ? 1_555 ? 18 AC2 18 LYS A 98 ? LYS A 98 . ? 9_555 ? 19 AC2 18 SR B . ? SR A 202 . ? 1_555 ? 20 AC2 18 HOH D . ? HOH A 203 . ? 1_555 ? 21 AC2 18 HOH D . ? HOH A 208 . ? 1_555 ? 22 AC2 18 HOH D . ? HOH A 211 . ? 1_555 ? 23 AC2 18 HOH D . ? HOH A 230 . ? 1_555 ? 24 AC2 18 HOH D . ? HOH A 276 . ? 1_555 ? 25 AC2 18 HOH D . ? HOH A 281 . ? 21_455 ? # _database_PDB_matrix.entry_id 1DUC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1DUC _atom_sites.fract_transf_matrix[1][1] 0.009372 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009372 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009372 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S SR # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 MET 28 28 28 MET MET A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 GLN 44 44 44 GLN GLN A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 PHE 50 50 50 PHE PHE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 TRP 52 52 52 TRP TRP A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 MET 59 59 59 MET MET A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 TYR 75 75 75 TYR TYR A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 CYS 83 83 83 CYS CYS A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 GLN 97 97 97 GLN GLN A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 PHE 99 99 99 PHE PHE A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 GLN 101 101 101 GLN GLN A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 ILE 103 103 103 ILE ILE A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 HIS 107 107 107 HIS HIS A . n A 1 108 HIS 108 108 108 HIS HIS A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 ASN 110 110 110 ASN ASN A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 GLN 113 113 113 GLN GLN A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 TRP 115 115 115 TRP TRP A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 ASN 118 118 118 ASN ASN A . n A 1 119 LYS 119 119 ? ? ? A . n A 1 120 ILE 120 120 ? ? ? A . n A 1 121 SER 121 121 ? ? ? A . n A 1 122 GLN 122 122 ? ? ? A . n A 1 123 ARG 123 123 ? ? ? A . n A 1 124 GLY 124 124 ? ? ? A . n A 1 125 ASP 125 125 ? ? ? A . n A 1 126 LYS 126 126 ? ? ? A . n A 1 127 GLY 127 127 ? ? ? A . n A 1 128 PHE 128 128 ? ? ? A . n A 1 129 GLY 129 129 ? ? ? A . n A 1 130 SER 130 130 ? ? ? A . n A 1 131 THR 131 131 ? ? ? A . n A 1 132 GLY 132 132 ? ? ? A . n A 1 133 VAL 133 133 ? ? ? A . n A 1 134 PHE 134 134 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SR 1 202 202 SR SR A . C 3 DUD 1 201 201 DUD DUD A . D 4 HOH 1 203 1 HOH HOH A . D 4 HOH 2 204 2 HOH HOH A . D 4 HOH 3 205 3 HOH HOH A . D 4 HOH 4 206 4 HOH HOH A . D 4 HOH 5 207 5 HOH HOH A . D 4 HOH 6 208 6 HOH HOH A . D 4 HOH 7 209 7 HOH HOH A . D 4 HOH 8 210 8 HOH HOH A . D 4 HOH 9 211 9 HOH HOH A . D 4 HOH 10 212 10 HOH HOH A . D 4 HOH 11 213 11 HOH HOH A . D 4 HOH 12 214 12 HOH HOH A . D 4 HOH 13 215 13 HOH HOH A . D 4 HOH 14 216 14 HOH HOH A . D 4 HOH 15 217 15 HOH HOH A . D 4 HOH 16 218 16 HOH HOH A . D 4 HOH 17 219 17 HOH HOH A . D 4 HOH 18 220 18 HOH HOH A . D 4 HOH 19 221 19 HOH HOH A . D 4 HOH 20 222 20 HOH HOH A . D 4 HOH 21 223 21 HOH HOH A . D 4 HOH 22 224 22 HOH HOH A . D 4 HOH 23 225 23 HOH HOH A . D 4 HOH 24 226 24 HOH HOH A . D 4 HOH 25 227 25 HOH HOH A . D 4 HOH 26 228 26 HOH HOH A . D 4 HOH 27 229 27 HOH HOH A . D 4 HOH 28 230 28 HOH HOH A . D 4 HOH 29 231 29 HOH HOH A . D 4 HOH 30 232 30 HOH HOH A . D 4 HOH 31 233 31 HOH HOH A . D 4 HOH 32 234 32 HOH HOH A . D 4 HOH 33 235 33 HOH HOH A . D 4 HOH 34 236 34 HOH HOH A . D 4 HOH 35 237 35 HOH HOH A . D 4 HOH 36 238 36 HOH HOH A . D 4 HOH 37 239 37 HOH HOH A . D 4 HOH 38 240 38 HOH HOH A . D 4 HOH 39 241 39 HOH HOH A . D 4 HOH 40 242 40 HOH HOH A . D 4 HOH 41 243 41 HOH HOH A . D 4 HOH 42 244 42 HOH HOH A . D 4 HOH 43 245 43 HOH HOH A . D 4 HOH 44 246 44 HOH HOH A . D 4 HOH 45 247 45 HOH HOH A . D 4 HOH 46 248 46 HOH HOH A . D 4 HOH 47 249 47 HOH HOH A . D 4 HOH 48 250 48 HOH HOH A . D 4 HOH 49 251 49 HOH HOH A . D 4 HOH 50 252 50 HOH HOH A . D 4 HOH 51 253 51 HOH HOH A . D 4 HOH 52 254 52 HOH HOH A . D 4 HOH 53 255 53 HOH HOH A . D 4 HOH 54 256 54 HOH HOH A . D 4 HOH 55 257 55 HOH HOH A . D 4 HOH 56 258 56 HOH HOH A . D 4 HOH 57 259 57 HOH HOH A . D 4 HOH 58 260 58 HOH HOH A . D 4 HOH 59 261 59 HOH HOH A . D 4 HOH 60 262 60 HOH HOH A . D 4 HOH 61 263 61 HOH HOH A . D 4 HOH 62 264 62 HOH HOH A . D 4 HOH 63 265 63 HOH HOH A . D 4 HOH 64 266 64 HOH HOH A . D 4 HOH 65 267 65 HOH HOH A . D 4 HOH 66 268 66 HOH HOH A . D 4 HOH 67 269 67 HOH HOH A . D 4 HOH 68 270 68 HOH HOH A . D 4 HOH 69 271 69 HOH HOH A . D 4 HOH 70 272 70 HOH HOH A . D 4 HOH 71 273 71 HOH HOH A . D 4 HOH 72 274 72 HOH HOH A . D 4 HOH 73 275 73 HOH HOH A . D 4 HOH 74 276 74 HOH HOH A . D 4 HOH 75 277 75 HOH HOH A . D 4 HOH 76 278 76 HOH HOH A . D 4 HOH 77 279 77 HOH HOH A . D 4 HOH 78 280 78 HOH HOH A . D 4 HOH 79 281 79 HOH HOH A . D 4 HOH 80 282 80 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8830 ? 1 MORE -106 ? 1 'SSA (A^2)' 16780 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 3 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 225 ? D HOH . 2 1 A HOH 242 ? D HOH . 3 1 A HOH 246 ? D HOH . 4 1 A HOH 250 ? D HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1A ? C DUD . ? A DUD 201 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O2B ? C DUD . ? A DUD 201 ? 1_555 75.7 ? 2 O1A ? C DUD . ? A DUD 201 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 203 ? 1_555 83.1 ? 3 O2B ? C DUD . ? A DUD 201 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 203 ? 1_555 69.3 ? 4 O1A ? C DUD . ? A DUD 201 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 204 ? 9_555 136.4 ? 5 O2B ? C DUD . ? A DUD 201 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 204 ? 9_555 75.0 ? 6 O ? D HOH . ? A HOH 203 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 204 ? 9_555 115.0 ? 7 O1A ? C DUD . ? A DUD 201 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 209 ? 1_555 75.9 ? 8 O2B ? C DUD . ? A DUD 201 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 209 ? 1_555 85.5 ? 9 O ? D HOH . ? A HOH 203 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 209 ? 1_555 150.6 ? 10 O ? D HOH . ? A HOH 204 ? 9_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 209 ? 1_555 70.4 ? 11 O1A ? C DUD . ? A DUD 201 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 214 ? 9_555 80.3 ? 12 O2B ? C DUD . ? A DUD 201 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 214 ? 9_555 136.2 ? 13 O ? D HOH . ? A HOH 203 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 214 ? 9_555 71.9 ? 14 O ? D HOH . ? A HOH 204 ? 9_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 214 ? 9_555 141.8 ? 15 O ? D HOH . ? A HOH 209 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 214 ? 9_555 123.2 ? 16 O1A ? C DUD . ? A DUD 201 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 215 ? 9_555 115.7 ? 17 O2B ? C DUD . ? A DUD 201 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 215 ? 9_555 152.6 ? 18 O ? D HOH . ? A HOH 203 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 215 ? 9_555 134.4 ? 19 O ? D HOH . ? A HOH 204 ? 9_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 215 ? 9_555 80.8 ? 20 O ? D HOH . ? A HOH 209 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 215 ? 9_555 74.2 ? 21 O ? D HOH . ? A HOH 214 ? 9_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 215 ? 9_555 71.2 ? 22 O1A ? C DUD . ? A DUD 201 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 223 ? 1_555 146.3 ? 23 O2B ? C DUD . ? A DUD 201 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 223 ? 1_555 107.2 ? 24 O ? D HOH . ? A HOH 203 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 223 ? 1_555 67.6 ? 25 O ? D HOH . ? A HOH 204 ? 9_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 223 ? 1_555 74.0 ? 26 O ? D HOH . ? A HOH 209 ? 1_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 223 ? 1_555 137.3 ? 27 O ? D HOH . ? A HOH 214 ? 9_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 223 ? 1_555 75.0 ? 28 O ? D HOH . ? A HOH 215 ? 9_555 SR ? B SR . ? A SR 202 ? 1_555 O ? D HOH . ? A HOH 223 ? 1_555 77.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-06-03 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-11-29 5 'Structure model' 1 4 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 5 'Structure model' Advisory 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 5 'Structure model' database_2 3 5 'Structure model' diffrn_source 4 5 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 8 5 'Structure model' '_pdbx_struct_conn_angle.value' 9 5 'Structure model' '_struct_conn.pdbx_dist_value' 10 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 11 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 12 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 13 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 14 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 15 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 5 'Structure model' '_struct_conn.ptnr2_symmetry' 21 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 22 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 23 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 REFMAC refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A LYS 42 ? ? CE A LYS 42 ? ? 1.339 1.508 -0.169 0.025 N 2 1 CE A LYS 42 ? ? NZ A LYS 42 ? ? 1.292 1.486 -0.194 0.025 N 3 1 CG A GLU 117 ? ? CD A GLU 117 ? ? 1.380 1.515 -0.135 0.015 N 4 1 CB A ASN 118 ? ? CG A ASN 118 ? ? 1.245 1.506 -0.261 0.023 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 13 ? ? CZ A ARG 13 ? ? NH1 A ARG 13 ? ? 112.33 120.30 -7.97 0.50 N 2 1 NE A ARG 13 ? ? CZ A ARG 13 ? ? NH2 A ARG 13 ? ? 131.25 120.30 10.95 0.50 N 3 1 CB A ASP 20 ? ? CG A ASP 20 ? ? OD2 A ASP 20 ? ? 124.09 118.30 5.79 0.90 N 4 1 CB A CYS 22 ? B CA A CYS 22 ? B C A CYS 22 ? ? 122.61 111.50 11.11 1.20 N 5 1 CB A ASP 40 ? ? CG A ASP 40 ? ? OD1 A ASP 40 ? ? 124.39 118.30 6.09 0.90 N 6 1 CD A LYS 42 ? ? CE A LYS 42 ? ? NZ A LYS 42 ? ? 140.07 111.70 28.37 2.30 N 7 1 O A SER 111 ? B C A SER 111 ? B N A ARG 112 ? ? 111.74 122.70 -10.96 1.60 Y 8 1 CA A ASN 118 ? ? CB A ASN 118 ? ? CG A ASN 118 ? ? 138.76 113.40 25.36 2.20 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 95 ? ? -37.56 128.73 2 1 SER A 109 ? ? -92.99 41.33 3 1 SER A 111 ? B 148.62 82.95 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 PHE A 99 ? ? -10.56 2 1 ASN A 110 ? B 12.99 3 1 SER A 111 ? B -20.54 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A MET 1 ? CE ? A MET 1 CE 2 1 Y 0 A ARG 13 ? NH1 ? A ARG 13 NH1 3 1 Y 0 A ARG 13 ? NH2 ? A ARG 13 NH2 4 1 Y 0 A LYS 42 ? CE ? A LYS 42 CE 5 1 Y 0 A LYS 42 ? NZ ? A LYS 42 NZ 6 1 Y 0 A LYS 88 ? NZ ? A LYS 88 NZ 7 1 Y 0 A ASP 116 ? CG ? A ASP 116 CG 8 1 Y 0 A ASP 116 ? OD1 ? A ASP 116 OD1 9 1 Y 0 A ASP 116 ? OD2 ? A ASP 116 OD2 10 1 Y 0 A GLU 117 ? CD ? A GLU 117 CD 11 1 Y 0 A GLU 117 ? OE1 ? A GLU 117 OE1 12 1 Y 0 A GLU 117 ? OE2 ? A GLU 117 OE2 13 1 Y 0 A ASN 118 ? CG ? A ASN 118 CG 14 1 Y 0 A ASN 118 ? OD1 ? A ASN 118 OD1 15 1 Y 0 A ASN 118 ? ND2 ? A ASN 118 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 119 ? A LYS 119 2 1 Y 1 A ILE 120 ? A ILE 120 3 1 Y 1 A SER 121 ? A SER 121 4 1 Y 1 A GLN 122 ? A GLN 122 5 1 Y 1 A ARG 123 ? A ARG 123 6 1 Y 1 A GLY 124 ? A GLY 124 7 1 Y 1 A ASP 125 ? A ASP 125 8 1 Y 1 A LYS 126 ? A LYS 126 9 1 Y 1 A GLY 127 ? A GLY 127 10 1 Y 1 A PHE 128 ? A PHE 128 11 1 Y 1 A GLY 129 ? A GLY 129 12 1 Y 1 A SER 130 ? A SER 130 13 1 Y 1 A THR 131 ? A THR 131 14 1 Y 1 A GLY 132 ? A GLY 132 15 1 Y 1 A VAL 133 ? A VAL 133 16 1 Y 1 A PHE 134 ? A PHE 134 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'STRONTIUM ION' SR 3 "DEOXYURIDINE-5'-DIPHOSPHATE" DUD 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DUP _pdbx_initial_refinement_model.details 'PDB ENTRY 1DUP' #