HEADER HYDROLASE 29-NOV-97 1DUC TITLE EIAV DUTPASE DUDP/STRONTIUM COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DUTPASE, DUTP PYROPHOSPHATASE; COMPND 5 EC: 3.6.1.23; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: COMPLEX WITH DUDP AND STRONTIUM(II) ION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUINE INFECTIOUS ANEMIA VIRUS; SOURCE 3 ORGANISM_TAXID: 11665; SOURCE 4 CELL_LINE: BL21; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-3A/EDU KEYWDS HYDROLASE, DUTPASE, EIAV, TRIMERIC ENZYME, INHIBITOR COMPLEX, KEYWDS 2 ASPARTYL PROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.DAUTER,R.PERSSON,A.M.ROSENGREN,P.O.NYMAN,K.S.WILSON,E.S.CEDERGREN- AUTHOR 2 ZEPPEZAUER REVDAT 6 22-MAY-24 1DUC 1 REMARK REVDAT 5 09-AUG-23 1DUC 1 REMARK LINK REVDAT 4 29-NOV-17 1DUC 1 REMARK REVDAT 3 13-JUL-11 1DUC 1 VERSN REVDAT 2 24-FEB-09 1DUC 1 VERSN REVDAT 1 03-JUN-98 1DUC 0 JRNL AUTH Z.DAUTER,R.PERSSON,A.M.ROSENGREN,P.O.NYMAN,K.S.WILSON, JRNL AUTH 2 E.S.CEDERGREN-ZEPPEZAUER JRNL TITL CRYSTAL STRUCTURE OF DUTPASE FROM EQUINE INFECTIOUS ANAEMIA JRNL TITL 2 VIRUS; ACTIVE SITE METAL BINDING IN A SUBSTRATE ANALOGUE JRNL TITL 3 COMPLEX. JRNL REF J.MOL.BIOL. V. 285 655 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 9878436 JRNL DOI 10.1006/JMBI.1998.2332 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 668 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 919 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 27.90000 REMARK 3 B22 (A**2) : 27.90000 REMARK 3 B33 (A**2) : 27.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.019 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.040 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.041 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.011 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.216 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.190 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.260 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.150 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 6.100 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 13.400; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 26.700; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.900 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.800 ; 5.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.100 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.800 ; 8.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: COORDINATE ERROR ACCORDING TO REMARK 3 CRUICKSHANK = 0.11 A REMARK 4 REMARK 4 1DUC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172940. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : OCT-95 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.885 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13598 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : 0.12400 REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.68600 REMARK 200 R SYM FOR SHELL (I) : 0.68600 REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1DUP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROP: 3.0 MG/ML PROTEIN, 0.05 M REMARK 280 IMIDAZOL MALATE BUFFER, PH 7.0, 21% PEG 400, 20 MM SRCL2, 5 MM REMARK 280 DUDP; WELL: 0.1 M IMIDAZOLE MALATE BUFFER, PH 7.0, 42% PEG 400 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 53.35000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.35000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 53.35000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 53.35000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 53.35000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 53.35000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 53.35000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 53.35000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 53.35000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 53.35000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 53.35000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 53.35000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 53.35000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 53.35000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 80.02500 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 26.67500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 26.67500 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 80.02500 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 80.02500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 80.02500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 26.67500 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 26.67500 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 80.02500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 26.67500 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 80.02500 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 26.67500 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 80.02500 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 26.67500 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 26.67500 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 26.67500 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 80.02500 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 26.67500 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 80.02500 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 80.02500 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 80.02500 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 26.67500 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 26.67500 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 80.02500 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 80.02500 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 26.67500 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 26.67500 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 26.67500 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 26.67500 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 80.02500 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 26.67500 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 80.02500 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 26.67500 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 80.02500 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 80.02500 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 80.02500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 225 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 242 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 246 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 250 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 119 REMARK 465 ILE A 120 REMARK 465 SER A 121 REMARK 465 GLN A 122 REMARK 465 ARG A 123 REMARK 465 GLY A 124 REMARK 465 ASP A 125 REMARK 465 LYS A 126 REMARK 465 GLY A 127 REMARK 465 PHE A 128 REMARK 465 GLY A 129 REMARK 465 SER A 130 REMARK 465 THR A 131 REMARK 465 GLY A 132 REMARK 465 VAL A 133 REMARK 465 PHE A 134 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 1 CE REMARK 480 ARG A 13 NH1 NH2 REMARK 480 LYS A 42 CE NZ REMARK 480 LYS A 88 NZ REMARK 480 ASP A 116 CG OD1 OD2 REMARK 480 GLU A 117 CD OE1 OE2 REMARK 480 ASN A 118 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 42 CD LYS A 42 CE -0.169 REMARK 500 LYS A 42 CE LYS A 42 NZ -0.194 REMARK 500 GLU A 117 CG GLU A 117 CD -0.135 REMARK 500 ASN A 118 CB ASN A 118 CG -0.261 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 13 NE - CZ - NH1 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG A 13 NE - CZ - NH2 ANGL. DEV. = 10.9 DEGREES REMARK 500 ASP A 20 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 CYS A 22 CB - CA - C ANGL. DEV. = 11.1 DEGREES REMARK 500 ASP A 40 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 LYS A 42 CD - CE - NZ ANGL. DEV. = 28.4 DEGREES REMARK 500 SER A 111 O - C - N ANGL. DEV. = -11.0 DEGREES REMARK 500 ASN A 118 CA - CB - CG ANGL. DEV. = 25.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 95 128.73 -37.56 REMARK 500 SER A 109 41.33 -92.99 REMARK 500 SER A 111 82.95 148.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE A 99 -10.56 REMARK 500 ASN A 110 12.99 REMARK 500 SER A 111 -20.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 202 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DUD A 201 O1A REMARK 620 2 DUD A 201 O2B 75.7 REMARK 620 3 HOH A 203 O 83.1 69.3 REMARK 620 4 HOH A 204 O 136.4 75.0 115.0 REMARK 620 5 HOH A 209 O 75.9 85.5 150.6 70.4 REMARK 620 6 HOH A 214 O 80.3 136.2 71.9 141.8 123.2 REMARK 620 7 HOH A 215 O 115.7 152.6 134.4 80.8 74.2 71.2 REMARK 620 8 HOH A 223 O 146.3 107.2 67.6 74.0 137.3 75.0 77.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUD A 201 DBREF 1DUC A 1 134 UNP P11204 POL_EIAV9 742 875 SEQRES 1 A 134 MET LEU ALA TYR GLN GLY THR GLN ILE LYS GLU LYS ARG SEQRES 2 A 134 ASP GLU ASP ALA GLY PHE ASP LEU CYS VAL PRO TYR ASP SEQRES 3 A 134 ILE MET ILE PRO VAL SER ASP THR LYS ILE ILE PRO THR SEQRES 4 A 134 ASP VAL LYS ILE GLN VAL PRO PRO ASN SER PHE GLY TRP SEQRES 5 A 134 VAL THR GLY LYS SER SER MET ALA LYS GLN GLY LEU LEU SEQRES 6 A 134 ILE ASN GLY GLY ILE ILE ASP GLU GLY TYR THR GLY GLU SEQRES 7 A 134 ILE GLN VAL ILE CYS THR ASN ILE GLY LYS SER ASN ILE SEQRES 8 A 134 LYS LEU ILE GLU GLY GLN LYS PHE ALA GLN LEU ILE ILE SEQRES 9 A 134 LEU GLN HIS HIS SER ASN SER ARG GLN PRO TRP ASP GLU SEQRES 10 A 134 ASN LYS ILE SER GLN ARG GLY ASP LYS GLY PHE GLY SER SEQRES 11 A 134 THR GLY VAL PHE HET SR A 202 1 HET DUD A 201 24 HETNAM SR STRONTIUM ION HETNAM DUD DEOXYURIDINE-5'-DIPHOSPHATE FORMUL 2 SR SR 2+ FORMUL 3 DUD C9 H14 N2 O11 P2 FORMUL 4 HOH *80(H2 O) HELIX 1 1 SER A 57 GLN A 62 1 6 SHEET 1 S1 4 ALA A 3 GLN A 5 0 SHEET 2 S1 4 ASP A 33 GLN A 44 -1 O GLN A 44 N ALA A 3 SHEET 3 S1 4 GLN A 80 ILE A 86 -1 N VAL A 81 O ILE A 37 SHEET 4 S1 4 GLY A 63 ASN A 67 -1 O GLY A 63 N ILE A 86 SHEET 1 S2 4 PHE A 19 VAL A 23 0 SHEET 2 S2 4 GLN A 97 HIS A 107 -1 O GLN A 97 N VAL A 23 SHEET 3 S2 4 ASN A 48 THR A 54 -1 O ASN A 48 N HIS A 107 SHEET 4 S2 4 GLY A 69 ILE A 71 -1 O ILE A 71 N GLY A 51 SHEET 1 S3 2 ILE A 27 ILE A 29 0 SHEET 2 S3 2 ILE A 91 LEU A 93 -1 N ILE A 91 O ILE A 29 LINK O1A DUD A 201 SR SR A 202 1555 1555 2.53 LINK O2B DUD A 201 SR SR A 202 1555 1555 2.70 LINK SR SR A 202 O HOH A 203 1555 1555 2.71 LINK SR SR A 202 O HOH A 204 1555 9555 2.69 LINK SR SR A 202 O HOH A 209 1555 1555 2.69 LINK SR SR A 202 O HOH A 214 1555 9555 2.65 LINK SR SR A 202 O HOH A 215 1555 9555 2.73 LINK SR SR A 202 O HOH A 223 1555 1555 2.74 SITE 1 AC1 7 DUD A 201 HOH A 203 HOH A 204 HOH A 209 SITE 2 AC1 7 HOH A 214 HOH A 215 HOH A 223 SITE 1 AC2 18 LYS A 56 SER A 57 SER A 58 GLY A 69 SITE 2 AC2 18 ILE A 70 ILE A 71 ASP A 72 TYR A 75 SITE 3 AC2 18 GLN A 80 ILE A 82 LYS A 98 SR A 202 SITE 4 AC2 18 HOH A 203 HOH A 208 HOH A 211 HOH A 230 SITE 5 AC2 18 HOH A 276 HOH A 281 CRYST1 106.700 106.700 106.700 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009372 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009372 0.00000