data_1DUH # _entry.id 1DUH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DUH pdb_00001duh 10.2210/pdb1duh/pdb NDB UR0009 ? ? RCSB RCSB010379 ? ? WWPDB D_1000010379 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-05-08 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_conn_type 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 9 4 'Structure model' '_struct_conn.conn_type_id' 10 4 'Structure model' '_struct_conn.id' 11 4 'Structure model' '_struct_conn.pdbx_dist_value' 12 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 13 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 14 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 24 4 'Structure model' '_struct_conn_type.id' 25 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 26 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 27 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DUH _pdbx_database_status.recvd_initial_deposition_date 2000-01-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jovine, L.' 1 'Hainzl, T.' 2 'Oubridge, C.' 3 'Scott, W.G.' 4 'Li, J.' 5 'Sixma, T.K.' 6 'Wonacott, A.' 7 'Skarzynski, T.' 8 'Nagai, K.' 9 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structure of the ffh and EF-G binding sites in the conserved domain IV of Escherichia coli 4.5S RNA.' 'Structure Fold.Des.' 8 527 540 2000 FODEFH UK 0969-2126 1263 ? 10801497 '10.1016/S0969-2126(00)00137-4' 1 'Crystallization and preliminary X-ray analysis of the conserved domain IV of E. coli 4.5S RNA' 'Acta Crystallogr.,Sect.D' 56 1033 1037 2000 ABCRE6 DK 0907-4449 0766 ? ? 10.1107/S0907444900006910 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jovine, L.' 1 ? primary 'Hainzl, T.' 2 ? primary 'Oubridge, C.' 3 ? primary 'Scott, W.G.' 4 ? primary 'Li, J.' 5 ? primary 'Sixma, T.K.' 6 ? primary 'Wonacott, A.' 7 ? primary 'Skarzynski, T.' 8 ? primary 'Nagai, K.' 9 ? 1 'Jovine, L.' 10 ? 1 'Hainzl, T.' 11 ? 1 'Oubridge, C.' 12 ? 1 'Nagai, K.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '4.5S RNA DOMAIN IV' 14663.736 1 ? ? 'DOMAIN IV' ? 2 non-polymer syn 'LUTETIUM (III) ION' 174.967 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 5 water nat water 18.015 6 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'CUCUGUUUACCAGGUCAGGUCCGGAAGGAAGCAGCCAAGGCAGA(PGP)' _entity_poly.pdbx_seq_one_letter_code_can CUCUGUUUACCAGGUCAGGUCCGGAAGGAAGCAGCCAAGGCAGAG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'LUTETIUM (III) ION' LU 3 'MAGNESIUM ION' MG 4 'SULFATE ION' SO4 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 U n 1 3 C n 1 4 U n 1 5 G n 1 6 U n 1 7 U n 1 8 U n 1 9 A n 1 10 C n 1 11 C n 1 12 A n 1 13 G n 1 14 G n 1 15 U n 1 16 C n 1 17 A n 1 18 G n 1 19 G n 1 20 U n 1 21 C n 1 22 C n 1 23 G n 1 24 G n 1 25 A n 1 26 A n 1 27 G n 1 28 G n 1 29 A n 1 30 A n 1 31 G n 1 32 C n 1 33 A n 1 34 G n 1 35 C n 1 36 C n 1 37 A n 1 38 A n 1 39 G n 1 40 G n 1 41 C n 1 42 A n 1 43 G n 1 44 A n 1 45 PGP n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;RNA SEQUENCE TAKEN FROM ESCHERICHIA COLI 4.5S RNA. THE RNA WAS PRODUCED BY T7 RNA POLYMERASE IN VITRO TRANSCRIPTION USING RIBOZYME TECHNOLOGY ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 LU non-polymer . 'LUTETIUM (III) ION' LU 'Lu 3' 174.967 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PGP 'RNA linking' n "GUANOSINE-3',5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 31 31 C C A . n A 1 2 U 2 32 32 U U A . n A 1 3 C 3 33 33 C C A . n A 1 4 U 4 34 34 U U A . n A 1 5 G 5 35 35 G G A . n A 1 6 U 6 36 36 U U A . n A 1 7 U 7 37 37 U U A . n A 1 8 U 8 38 38 U U A . n A 1 9 A 9 39 39 A A A . n A 1 10 C 10 40 40 C C A . n A 1 11 C 11 41 41 C C A . n A 1 12 A 12 42 42 A A A . n A 1 13 G 13 43 43 G G A . n A 1 14 G 14 44 44 G G A . n A 1 15 U 15 45 45 U U A . n A 1 16 C 16 46 46 C C A . n A 1 17 A 17 47 47 A A A . n A 1 18 G 18 48 48 G G A . n A 1 19 G 19 49 49 G G A . n A 1 20 U 20 50 50 U U A . n A 1 21 C 21 51 51 C C A . n A 1 22 C 22 52 52 C C A . n A 1 23 G 23 53 53 G G A . n A 1 24 G 24 54 54 G G A . n A 1 25 A 25 55 55 A A A . n A 1 26 A 26 56 56 A A A . n A 1 27 G 27 57 57 G G A . n A 1 28 G 28 58 58 G G A . n A 1 29 A 29 59 59 A A A . n A 1 30 A 30 60 60 A A A . n A 1 31 G 31 61 61 G G A . n A 1 32 C 32 62 62 C C A . n A 1 33 A 33 63 63 A A A . n A 1 34 G 34 64 64 G G A . n A 1 35 C 35 65 65 C C A . n A 1 36 C 36 66 66 C C A . n A 1 37 A 37 67 67 A A A . n A 1 38 A 38 68 68 A A A . n A 1 39 G 39 69 69 G G A . n A 1 40 G 40 70 70 G G A . n A 1 41 C 41 71 71 C C A . n A 1 42 A 42 72 72 A A A . n A 1 43 G 43 73 73 G G A . n A 1 44 A 44 74 74 A A A . n A 1 45 PGP 45 75 75 PGP PGP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LU 1 1 1 LU LU A . C 3 MG 1 2 2 MG MG A . D 4 SO4 1 3 3 SO4 SO4 A . E 4 SO4 1 4 4 SO4 SO4 A . F 5 HOH 1 101 1 HOH HOH A . F 5 HOH 2 102 2 HOH HOH A . F 5 HOH 3 103 3 HOH HOH A . F 5 HOH 4 104 4 HOH HOH A . F 5 HOH 5 105 5 HOH HOH A . F 5 HOH 6 106 6 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _cell.entry_id 1DUH _cell.length_a 69.697 _cell.length_b 69.697 _cell.length_c 84.102 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DUH _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 154 # _exptl.entry_id 1DUH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.15 _exptl_crystal.density_percent_sol 76.9 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 303.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;CRYSTALLIZED FROM 1.60-1.90 M (NH4)2SO4, 0.09 M MAGNESIUM ACETATE, 0.05 M SODIUM CACODYLATE PH 6.0, AT 303 K. CRYSTALS WERE STABILISED AT 292 K IN A SOLUTION OF 2.20 M (NH4)2SO4, 0.01 M MGCL2, 0.05 M BIS-TRIS-HCL PH 6.0. SOAK CONDITIONS: CRYSTALS WERE SOAKED IN STABILISATION SOLUTION CONTAINING 0.002 M LUTETIUM CHLORIDE HEXAHYDRATE. CRYOPROTECTION CONDITIONS: AFTER ADDITION OF 20% GLYCEROL (W/V) TO THE SOAK SOLUTION, CRYSTALS WERE FLASH-FROZEN IN LIQUID NITROGEN., VAPOR DIFFUSION, SITTING DROP, temperature 303.15K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'MAGNESIUM ACETATE' ? ? ? 1 2 1 'SODIUM CACODYLATE' ? ? ? 1 3 1 BIS-TRIS-HCL ? ? ? 1 4 1 '(NH4)2SO4' ? ? ? 1 5 1 MGCL2 ? ? ? 1 6 1 LUCL3 ? ? ? 1 7 2 '(NH4)2SO4' ? ? ? 1 8 2 BIS-TRIS-HCL ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1999-08-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0302 1.0 2 1.3366 1.0 3 1.3369 1.0 4 0.9968 1.0 5 1.3359 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ELETTRA BEAMLINE 5.2R' _diffrn_source.pdbx_synchrotron_site ELETTRA _diffrn_source.pdbx_synchrotron_beamline 5.2R _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '1.0302, 1.3366, 1.3369, 0.9968, 1.3359' # _reflns.entry_id 1DUH _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 22.50 _reflns.d_resolution_high 2.70 _reflns.number_obs 12371 _reflns.number_all 12371 _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs 0.0760000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.5 _reflns.B_iso_Wilson_estimate 100.3 _reflns.pdbx_redundancy 4.2 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.70 _reflns_shell.d_res_low 2.80 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.5930000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_redundancy 4.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1DUH _refine.ls_number_reflns_obs 10539 _refine.ls_number_reflns_all 12560 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1101782.89 _refine.pdbx_data_cutoff_low_absF 0.00 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.50 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 83.9 _refine.ls_R_factor_obs 0.2440000 _refine.ls_R_factor_all 0.2710000 _refine.ls_R_factor_R_work 0.2300000 _refine.ls_R_factor_R_free 0.2450000 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.6 _refine.ls_number_reflns_R_free 909 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 80.6 _refine.aniso_B[1][1] 26.51 _refine.aniso_B[2][2] 26.51 _refine.aniso_B[3][3] -53.03 _refine.aniso_B[1][2] 21.46 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.266 _refine.solvent_model_param_bsol 36.81 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;A LOW RESOLUTION LIMIT OF 8.0 A WAS USED FOR INITIAL B FACTOR AND BULK SOLVENT CORRECTIONS. NUCLEOTIDE A39 WAS REFINED WITH OCCUPANCY OF 0.5 TO ACCOUNT FOR ITS ALTERNATIVELY ORDERED AND DISORDERED CONFORMATION IN ADJACENT MOLECULES WITHIN THE CRYSTAL. THE APPARENT DISCREPANCY BETWEEN DATA COMPLETENESS IN SCALING AND REFINEMENT IS DUE TO THE VERY HIGH ANISOTROPY OF THE CRYSTAL DIFFRACTION, SO THAT, ALTHOUGH DATA COVERAGE WAS COMPLETE UP TO 2.70 A RESOLUTION, A SIGNIFICANT PROPORTION OF REFLECTIONS AT HIGH RESOLUTION WERE EXTINCT. THIS RESULTS IN THE HIGH R SYM IN THE OUTER SHELL, AND THE LOWER EFFECTIVE DATA COMPLETENESS DURING REFINEMENT (EXTINCT REFLECTIONS WERE OMITTED BY CNS). ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'PARKINSON ET AL.' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1DUH _refine_analyze.Luzzati_coordinate_error_obs 0.50 _refine_analyze.Luzzati_sigma_a_obs 0.92 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.53 _refine_analyze.Luzzati_sigma_a_free 0.90 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 970 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 988 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 22.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.0 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 15.6 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.24 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 8 2.70 2.82 858 0.5310000 60.0 0.5310000 0.057 5.5 86 . 'X-RAY DIFFRACTION' . . 8 2.82 2.97 1022 0.4370000 72.3 0.4370000 0.042 6.8 106 . 'X-RAY DIFFRACTION' . . 8 2.97 3.16 1150 0.3630000 80.4 0.3640000 0.033 7.5 119 . 'X-RAY DIFFRACTION' . . 8 3.16 3.40 1292 0.3120000 89.7 0.3120000 0.029 7.5 117 . 'X-RAY DIFFRACTION' . . 8 3.40 3.74 1287 0.2510000 89.9 0.2510000 0.024 7.0 108 . 'X-RAY DIFFRACTION' . . 8 3.74 4.29 1295 0.2290000 91.1 0.2290000 0.020 8.4 132 . 'X-RAY DIFFRACTION' . . 8 4.29 5.40 1417 0.1760000 97.0 0.1760000 0.016 7.2 114 . 'X-RAY DIFFRACTION' . . 8 5.40 60.36 1300 0.1550000 90.6 0.1540000 0.014 8.0 125 . 'X-RAY DIFFRACTION' . . # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 DNA_RNA_REP+.PARAM DNA_RNA+.TOP 'X-RAY DIFFRACTION' 2 ION_REP+.PARAM ION+.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARA WATER.TOP 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1DUH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1DUH _struct.title 'CRYSTAL STRUCTURE OF THE CONSERVED DOMAIN IV OF E. COLI 4.5S RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DUH _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;4.5S RNA, DOMAIN IV, HELIX 8, SIGNAL RECOGNITION PARTICLE, SRP, FFH, SRP54, ELONGATION FACTOR G, EF-G, 23S RNA, NON-CANONICAL BASE PAIRS, MISMATCH, RNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? # _struct_ref.id 1 _struct_ref.db_name EMBL _struct_ref.db_code ECRNA45 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession X01074 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1DUH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 44 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession X01074 _struct_ref_seq.db_align_beg 192 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 235 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 31 _struct_ref_seq.pdbx_auth_seq_align_end 74 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A A 44 "O3'" ? ? ? 1_555 A PGP 45 P ? ? A A 74 A PGP 75 1_555 ? ? ? ? ? ? ? 1.607 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 A A 29 "O3'" ? ? A MG 2 A A 59 1_555 ? ? ? ? ? ? ? 1.918 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 A A 30 OP1 ? ? A MG 2 A A 60 1_555 ? ? ? ? ? ? ? 2.738 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A PGP 45 N1 ? ? A C 31 A PGP 75 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A PGP 45 O6 ? ? A C 31 A PGP 75 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A PGP 45 N2 ? ? A C 31 A PGP 75 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 44 N1 ? ? A U 32 A A 74 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 44 N6 ? ? A U 32 A A 74 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 33 A G 73 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 33 A G 73 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 33 A G 73 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 42 N1 ? ? A U 34 A A 72 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 42 N6 ? ? A U 34 A A 72 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 35 A C 71 4_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog12 hydrog ? ? A U 6 N3 ? ? ? 1_555 A G 40 O6 ? ? A U 36 A G 70 4_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A U 6 O2 ? ? ? 1_555 A G 40 N1 ? ? A U 36 A G 70 4_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A U 7 N3 ? ? ? 1_555 A G 39 O6 ? ? A U 37 A G 69 4_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? A U 7 O2 ? ? ? 1_555 A G 39 N1 ? ? A U 37 A G 69 4_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog16 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 38 A A 68 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 38 A A 68 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 43 A C 66 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 43 A C 66 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 43 A C 66 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 35 N3 ? ? A G 44 A C 65 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 35 O2 ? ? A G 44 A C 65 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 35 N4 ? ? A G 44 A C 65 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 15 N3 ? ? ? 1_555 A G 34 O6 ? ? A U 45 A G 64 4_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog25 hydrog ? ? A U 15 O2 ? ? ? 1_555 A G 34 N1 ? ? A U 45 A G 64 4_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? A C 16 O2 ? ? ? 1_555 A A 33 N6 ? ? A C 46 A A 63 4_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog27 hydrog ? ? A A 17 N6 ? ? ? 1_555 A C 32 N3 ? ? A A 47 A C 62 4_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog28 hydrog ? ? A A 17 N7 ? ? ? 1_555 A C 32 N4 ? ? A A 47 A C 62 4_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog29 hydrog ? ? A G 18 O6 ? ? ? 1_555 A G 31 N2 ? ? A G 48 A G 61 4_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog30 hydrog ? ? A G 19 N1 ? ? ? 1_555 A A 30 N1 ? ? A G 49 A A 60 4_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog31 hydrog ? ? A G 19 O6 ? ? ? 1_555 A A 30 N6 ? ? A G 49 A A 60 4_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog32 hydrog ? ? A U 20 N3 ? ? ? 1_555 A A 29 N1 ? ? A U 50 A A 59 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 20 O4 ? ? ? 1_555 A A 29 N6 ? ? A U 50 A A 59 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 51 A G 58 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 51 A G 58 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 51 A G 58 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 27 N1 ? ? A C 52 A G 57 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 27 O6 ? ? A C 52 A G 57 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 27 N2 ? ? A C 52 A G 57 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 23 N2 ? ? ? 1_555 A A 26 N7 ? ? A G 53 A A 56 4_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog41 hydrog ? ? A G 23 N3 ? ? ? 1_555 A A 26 N6 ? ? A G 53 A A 56 4_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog42 hydrog ? ? A G 24 N2 ? ? ? 1_555 A A 25 N7 ? ? A G 54 A A 55 4_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog43 hydrog ? ? A G 24 N3 ? ? ? 1_555 A A 25 N6 ? ? A G 54 A A 55 4_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog44 hydrog ? ? A A 25 N6 ? ? ? 1_555 A G 24 N3 ? ? A A 55 A G 54 4_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog45 hydrog ? ? A A 25 N7 ? ? ? 1_555 A G 24 N2 ? ? A A 55 A G 54 4_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog46 hydrog ? ? A A 26 N6 ? ? ? 1_555 A G 23 N3 ? ? A A 56 A G 53 4_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog47 hydrog ? ? A A 26 N7 ? ? ? 1_555 A G 23 N2 ? ? A A 56 A G 53 4_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog48 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 22 N3 ? ? A G 57 A C 52 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 22 O2 ? ? A G 57 A C 52 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 22 N4 ? ? A G 57 A C 52 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 58 A C 51 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 58 A C 51 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 58 A C 51 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A A 29 N1 ? ? ? 1_555 A U 20 N3 ? ? A A 59 A U 50 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A A 29 N6 ? ? ? 1_555 A U 20 O4 ? ? A A 59 A U 50 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A A 30 N1 ? ? ? 1_555 A G 19 N1 ? ? A A 60 A G 49 4_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog57 hydrog ? ? A A 30 N6 ? ? ? 1_555 A G 19 O6 ? ? A A 60 A G 49 4_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog58 hydrog ? ? A G 31 N2 ? ? ? 1_555 A G 18 O6 ? ? A G 61 A G 48 4_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog59 hydrog ? ? A C 32 N3 ? ? ? 1_555 A A 17 N6 ? ? A C 62 A A 47 4_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog60 hydrog ? ? A C 32 N4 ? ? ? 1_555 A A 17 N7 ? ? A C 62 A A 47 4_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog61 hydrog ? ? A A 33 N6 ? ? ? 1_555 A C 16 O2 ? ? A A 63 A C 46 4_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog62 hydrog ? ? A G 34 N1 ? ? ? 1_555 A U 15 O2 ? ? A G 64 A U 45 4_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog63 hydrog ? ? A G 34 O6 ? ? ? 1_555 A U 15 N3 ? ? A G 64 A U 45 4_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog64 hydrog ? ? A C 35 N3 ? ? ? 1_555 A G 14 N1 ? ? A C 65 A G 44 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 35 N4 ? ? ? 1_555 A G 14 O6 ? ? A C 65 A G 44 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 35 O2 ? ? ? 1_555 A G 14 N2 ? ? A C 65 A G 44 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 36 N3 ? ? ? 1_555 A G 13 N1 ? ? A C 66 A G 43 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 36 N4 ? ? ? 1_555 A G 13 O6 ? ? A C 66 A G 43 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 36 O2 ? ? ? 1_555 A G 13 N2 ? ? A C 66 A G 43 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A A 38 N1 ? ? ? 1_555 A U 8 N3 ? ? A A 68 A U 38 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A A 38 N6 ? ? ? 1_555 A U 8 O4 ? ? A A 68 A U 38 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 39 N1 ? ? ? 1_555 A U 7 O2 ? ? A G 69 A U 37 4_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog73 hydrog ? ? A G 39 O6 ? ? ? 1_555 A U 7 N3 ? ? A G 69 A U 37 4_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog74 hydrog ? ? A G 40 N1 ? ? ? 1_555 A U 6 O2 ? ? A G 70 A U 36 4_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog75 hydrog ? ? A G 40 O6 ? ? ? 1_555 A U 6 N3 ? ? A G 70 A U 36 4_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog76 hydrog ? ? A C 41 O2 ? ? ? 1_555 A G 5 N2 ? ? A C 71 A G 35 4_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog77 hydrog ? ? A A 42 N1 ? ? ? 1_555 A U 4 N3 ? ? A A 72 A U 34 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A A 42 N6 ? ? ? 1_555 A U 4 O4 ? ? A A 72 A U 34 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 43 N1 ? ? ? 1_555 A C 3 N3 ? ? A G 73 A C 33 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 43 N2 ? ? ? 1_555 A C 3 O2 ? ? A G 73 A C 33 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 43 O6 ? ? ? 1_555 A C 3 N4 ? ? A G 73 A C 33 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A A 44 N1 ? ? ? 1_555 A U 2 N3 ? ? A A 74 A U 32 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A A 44 N6 ? ? ? 1_555 A U 2 O4 ? ? A A 74 A U 32 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A PGP 45 N1 ? ? ? 1_555 A C 1 N3 ? ? A PGP 75 A C 31 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A PGP 45 N2 ? ? ? 1_555 A C 1 O2 ? ? A PGP 75 A C 31 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A PGP 45 O6 ? ? ? 1_555 A C 1 N4 ? ? A PGP 75 A C 31 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id "O3'" _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id A _pdbx_struct_conn_angle.ptnr1_label_seq_id 29 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id A _pdbx_struct_conn_angle.ptnr1_auth_seq_id 59 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id MG _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id C _pdbx_struct_conn_angle.ptnr2_label_comp_id MG _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id MG _pdbx_struct_conn_angle.ptnr2_auth_seq_id 2 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id OP1 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id A _pdbx_struct_conn_angle.ptnr3_label_seq_id 30 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id A _pdbx_struct_conn_angle.ptnr3_auth_seq_id 60 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 62.1 _pdbx_struct_conn_angle.value_esd ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A LU 1 ? 1 'BINDING SITE FOR RESIDUE LU A 1' AC2 Software A MG 2 ? 2 'BINDING SITE FOR RESIDUE MG A 2' AC3 Software A SO4 3 ? 1 'BINDING SITE FOR RESIDUE SO4 A 3' AC4 Software A SO4 4 ? 3 'BINDING SITE FOR RESIDUE SO4 A 4' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 PGP A 45 ? PGP A 75 . ? 1_555 ? 2 AC2 2 A A 29 ? A A 59 . ? 1_555 ? 3 AC2 2 A A 30 ? A A 60 . ? 1_555 ? 4 AC3 1 C A 1 ? C A 31 . ? 1_555 ? 5 AC4 3 G A 18 ? G A 48 . ? 1_555 ? 6 AC4 3 G A 19 ? G A 49 . ? 1_555 ? 7 AC4 3 C A 32 ? C A 62 . ? 4_555 ? # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id PGP _pdbx_struct_mod_residue.label_seq_id 45 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id PGP _pdbx_struct_mod_residue.auth_seq_id 75 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id G _pdbx_struct_mod_residue.details "GUANOSINE-3',5'-DIPHOSPHATE" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 LU LU LU N N 114 MG MG MG N N 115 PGP P1 P N N 116 PGP O4P O N N 117 PGP O5P O N N 118 PGP O6P O N N 119 PGP P P N N 120 PGP OP1 O N N 121 PGP OP2 O N N 122 PGP OP3 O N N 123 PGP "O5'" O N N 124 PGP "C5'" C N N 125 PGP "C4'" C N R 126 PGP "O4'" O N N 127 PGP "C3'" C N S 128 PGP "O3'" O N N 129 PGP "C2'" C N R 130 PGP "O2'" O N N 131 PGP "C1'" C N R 132 PGP N9 N Y N 133 PGP C8 C Y N 134 PGP N7 N Y N 135 PGP C5 C Y N 136 PGP C6 C N N 137 PGP O6 O N N 138 PGP N1 N N N 139 PGP C2 C N N 140 PGP N2 N N N 141 PGP N3 N N N 142 PGP C4 C Y N 143 PGP HOP5 H N N 144 PGP HOP6 H N N 145 PGP HOP2 H N N 146 PGP HOP3 H N N 147 PGP "H5'" H N N 148 PGP "H5''" H N N 149 PGP "H4'" H N N 150 PGP "H3'" H N N 151 PGP "H2'" H N N 152 PGP "HO2'" H N N 153 PGP "H1'" H N N 154 PGP H8 H N N 155 PGP HN1 H N N 156 PGP HN21 H N N 157 PGP HN22 H N N 158 SO4 S S N N 159 SO4 O1 O N N 160 SO4 O2 O N N 161 SO4 O3 O N N 162 SO4 O4 O N N 163 U OP3 O N N 164 U P P N N 165 U OP1 O N N 166 U OP2 O N N 167 U "O5'" O N N 168 U "C5'" C N N 169 U "C4'" C N R 170 U "O4'" O N N 171 U "C3'" C N S 172 U "O3'" O N N 173 U "C2'" C N R 174 U "O2'" O N N 175 U "C1'" C N R 176 U N1 N N N 177 U C2 C N N 178 U O2 O N N 179 U N3 N N N 180 U C4 C N N 181 U O4 O N N 182 U C5 C N N 183 U C6 C N N 184 U HOP3 H N N 185 U HOP2 H N N 186 U "H5'" H N N 187 U "H5''" H N N 188 U "H4'" H N N 189 U "H3'" H N N 190 U "HO3'" H N N 191 U "H2'" H N N 192 U "HO2'" H N N 193 U "H1'" H N N 194 U H3 H N N 195 U H5 H N N 196 U H6 H N N 197 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 PGP P1 O4P doub N N 118 PGP P1 O5P sing N N 119 PGP P1 O6P sing N N 120 PGP P1 "O3'" sing N N 121 PGP O5P HOP5 sing N N 122 PGP O6P HOP6 sing N N 123 PGP P OP1 doub N N 124 PGP P OP2 sing N N 125 PGP P OP3 sing N N 126 PGP P "O5'" sing N N 127 PGP OP2 HOP2 sing N N 128 PGP OP3 HOP3 sing N N 129 PGP "O5'" "C5'" sing N N 130 PGP "C5'" "C4'" sing N N 131 PGP "C5'" "H5'" sing N N 132 PGP "C5'" "H5''" sing N N 133 PGP "C4'" "O4'" sing N N 134 PGP "C4'" "C3'" sing N N 135 PGP "C4'" "H4'" sing N N 136 PGP "O4'" "C1'" sing N N 137 PGP "C3'" "O3'" sing N N 138 PGP "C3'" "C2'" sing N N 139 PGP "C3'" "H3'" sing N N 140 PGP "C2'" "O2'" sing N N 141 PGP "C2'" "C1'" sing N N 142 PGP "C2'" "H2'" sing N N 143 PGP "O2'" "HO2'" sing N N 144 PGP "C1'" N9 sing N N 145 PGP "C1'" "H1'" sing N N 146 PGP N9 C8 sing Y N 147 PGP N9 C4 sing Y N 148 PGP C8 N7 doub Y N 149 PGP C8 H8 sing N N 150 PGP N7 C5 sing Y N 151 PGP C5 C6 sing N N 152 PGP C5 C4 doub Y N 153 PGP C6 O6 doub N N 154 PGP C6 N1 sing N N 155 PGP N1 C2 sing N N 156 PGP N1 HN1 sing N N 157 PGP C2 N2 sing N N 158 PGP C2 N3 doub N N 159 PGP N2 HN21 sing N N 160 PGP N2 HN22 sing N N 161 PGP N3 C4 sing N N 162 SO4 S O1 doub N N 163 SO4 S O2 doub N N 164 SO4 S O3 sing N N 165 SO4 S O4 sing N N 166 U OP3 P sing N N 167 U OP3 HOP3 sing N N 168 U P OP1 doub N N 169 U P OP2 sing N N 170 U P "O5'" sing N N 171 U OP2 HOP2 sing N N 172 U "O5'" "C5'" sing N N 173 U "C5'" "C4'" sing N N 174 U "C5'" "H5'" sing N N 175 U "C5'" "H5''" sing N N 176 U "C4'" "O4'" sing N N 177 U "C4'" "C3'" sing N N 178 U "C4'" "H4'" sing N N 179 U "O4'" "C1'" sing N N 180 U "C3'" "O3'" sing N N 181 U "C3'" "C2'" sing N N 182 U "C3'" "H3'" sing N N 183 U "O3'" "HO3'" sing N N 184 U "C2'" "O2'" sing N N 185 U "C2'" "C1'" sing N N 186 U "C2'" "H2'" sing N N 187 U "O2'" "HO2'" sing N N 188 U "C1'" N1 sing N N 189 U "C1'" "H1'" sing N N 190 U N1 C2 sing N N 191 U N1 C6 sing N N 192 U C2 O2 doub N N 193 U C2 N3 sing N N 194 U N3 C4 sing N N 195 U N3 H3 sing N N 196 U C4 O4 doub N N 197 U C4 C5 sing N N 198 U C5 C6 doub N N 199 U C5 H5 sing N N 200 U C6 H6 sing N N 201 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1DUH 'double helix' 1DUH 'a-form double helix' 1DUH 'mismatched base pair' 1DUH 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A PGP 45 4_555 0.569 -0.528 -0.156 10.286 -13.615 1.428 1 A_C31:PGP75_A A 31 ? A 75 ? 19 1 1 A U 2 1_555 A A 44 4_555 -0.039 -0.305 0.276 1.281 -16.429 4.093 2 A_U32:A74_A A 32 ? A 74 ? 20 1 1 A C 3 1_555 A G 43 4_555 0.330 -0.321 0.294 -0.876 -9.775 0.198 3 A_C33:G73_A A 33 ? A 73 ? 19 1 1 A U 4 1_555 A A 42 4_555 0.090 -0.089 -0.205 5.243 -0.181 10.563 4 A_U34:A72_A A 34 ? A 72 ? 20 1 1 A G 5 1_555 A C 41 4_555 0.339 0.088 1.035 6.409 -7.541 9.821 5 A_G35:C71_A A 35 ? A 71 ? ? 1 1 A U 6 1_555 A G 40 4_555 1.988 -0.384 0.561 0.363 -7.213 3.557 6 A_U36:G70_A A 36 ? A 70 ? 28 1 1 A U 7 1_555 A G 39 4_555 2.087 -0.582 0.134 -5.645 -8.165 2.583 7 A_U37:G69_A A 37 ? A 69 ? 28 1 1 A U 8 1_555 A A 38 4_555 0.353 -0.045 0.567 -6.795 -9.445 4.613 8 A_U38:A68_A A 38 ? A 68 ? 20 1 1 A G 13 1_555 A C 36 4_555 -0.732 -0.192 -0.125 -0.012 -2.060 1.259 9 A_G43:C66_A A 43 ? A 66 ? 19 1 1 A G 14 1_555 A C 35 4_555 0.125 -0.109 -0.052 -6.507 -10.547 -0.024 10 A_G44:C65_A A 44 ? A 65 ? 19 1 1 A U 15 1_555 A G 34 4_555 1.965 -0.572 0.096 -4.324 -4.440 4.099 11 A_U45:G64_A A 45 ? A 64 ? 28 1 1 A C 16 1_555 A A 33 4_555 6.134 -4.675 0.654 1.310 -8.844 -21.379 12 A_C46:A63_A A 46 ? A 63 ? ? 6 1 A A 17 1_555 A C 32 4_555 -2.817 -0.616 0.001 1.160 -1.218 -85.633 13 A_A47:C62_A A 47 ? A 62 ? 25 4 1 A G 18 1_555 A G 31 4_555 -6.967 -2.593 0.717 4.374 -9.848 -18.635 14 A_G48:G61_A A 48 ? A 61 ? ? ? 1 A G 19 1_555 A A 30 4_555 -0.526 1.433 -0.106 8.697 -8.319 -13.183 15 A_G49:A60_A A 49 ? A 60 ? 8 ? 1 A U 20 1_555 A A 29 4_555 -0.617 -0.217 0.064 15.035 -8.684 -2.650 16 A_U50:A59_A A 50 ? A 59 ? 20 1 1 A C 21 1_555 A G 28 4_555 -0.651 -0.156 -0.102 9.258 -4.855 2.004 17 A_C51:G58_A A 51 ? A 58 ? 19 1 1 A C 22 1_555 A G 27 4_555 0.724 -0.404 -0.069 2.227 -9.075 1.910 18 A_C52:G57_A A 52 ? A 57 ? 19 1 1 A G 23 1_555 A A 26 4_555 6.399 -3.747 -0.162 -5.500 -8.266 -6.386 19 A_G53:A56_A A 53 ? A 56 ? 11 9 1 A G 24 1_555 A A 25 4_555 6.232 -4.144 0.677 17.406 6.587 13.660 20 A_G54:A55_A A 54 ? A 55 ? 11 9 1 A A 25 1_555 A G 24 4_555 -6.232 -4.144 0.677 -17.406 6.587 13.660 21 A_A55:G54_A A 55 ? A 54 ? 11 9 1 A A 26 1_555 A G 23 4_555 -6.399 -3.747 -0.162 5.500 -8.266 -6.386 22 A_A56:G53_A A 56 ? A 53 ? 11 9 1 A G 27 1_555 A C 22 4_555 -0.724 -0.404 -0.069 -2.227 -9.075 1.910 23 A_G57:C52_A A 57 ? A 52 ? 19 1 1 A G 28 1_555 A C 21 4_555 0.651 -0.156 -0.102 -9.258 -4.855 2.004 24 A_G58:C51_A A 58 ? A 51 ? 19 1 1 A A 29 1_555 A U 20 4_555 0.617 -0.217 0.064 -15.035 -8.684 -2.650 25 A_A59:U50_A A 59 ? A 50 ? 20 1 1 A A 30 1_555 A G 19 4_555 0.526 1.433 -0.106 -8.697 -8.319 -13.183 26 A_A60:G49_A A 60 ? A 49 ? 8 ? 1 A G 31 1_555 A G 18 4_555 6.967 -2.593 0.717 -4.374 -9.847 -18.635 27 A_G61:G48_A A 61 ? A 48 ? ? ? 1 A C 32 1_555 A A 17 4_555 2.817 -0.616 0.001 -1.160 -1.218 -85.633 28 A_C62:A47_A A 62 ? A 47 ? 25 4 1 A A 33 1_555 A C 16 4_555 -6.134 -4.675 0.654 -1.310 -8.844 -21.379 29 A_A63:C46_A A 63 ? A 46 ? ? 6 1 A G 34 1_555 A U 15 4_555 -1.965 -0.572 0.096 4.324 -4.440 4.099 30 A_G64:U45_A A 64 ? A 45 ? 28 1 1 A C 35 1_555 A G 14 4_555 -0.125 -0.109 -0.052 6.507 -10.547 -0.024 31 A_C65:G44_A A 65 ? A 44 ? 19 1 1 A C 36 1_555 A G 13 4_555 0.732 -0.192 -0.125 0.012 -2.060 1.259 32 A_C66:G43_A A 66 ? A 43 ? 19 1 1 A A 38 1_555 A U 8 4_555 -0.353 -0.045 0.567 6.795 -9.445 4.613 33 A_A68:U38_A A 68 ? A 38 ? 20 1 1 A G 39 1_555 A U 7 4_555 -2.087 -0.582 0.134 5.645 -8.165 2.583 34 A_G69:U37_A A 69 ? A 37 ? 28 1 1 A G 40 1_555 A U 6 4_555 -1.988 -0.384 0.561 -0.363 -7.213 3.557 35 A_G70:U36_A A 70 ? A 36 ? 28 1 1 A C 41 1_555 A G 5 4_555 -0.339 0.088 1.035 -6.409 -7.541 9.821 36 A_C71:G35_A A 71 ? A 35 ? ? 1 1 A A 42 1_555 A U 4 4_555 -0.090 -0.089 -0.205 -5.243 -0.181 10.563 37 A_A72:U34_A A 72 ? A 34 ? 20 1 1 A G 43 1_555 A C 3 4_555 -0.330 -0.321 0.294 0.876 -9.775 0.198 38 A_G73:C33_A A 73 ? A 33 ? 19 1 1 A A 44 1_555 A U 2 4_555 0.039 -0.305 0.276 -1.281 -16.429 4.093 39 A_A74:U32_A A 74 ? A 32 ? 20 1 1 A PGP 45 1_555 A C 1 4_555 -0.569 -0.528 -0.156 -10.286 -13.615 1.428 40 A_PGP75:C31_A A 75 ? A 31 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A PGP 45 4_555 A U 2 1_555 A A 44 4_555 0.236 -1.722 3.199 -3.713 17.133 31.534 -4.864 -0.831 1.992 28.901 6.264 35.970 1 AA_C31U32:A74PGP75_AA A 31 ? A 75 ? A 32 ? A 74 ? 1 A U 2 1_555 A A 44 4_555 A C 3 1_555 A G 43 4_555 -0.222 -1.421 3.204 -1.535 0.042 38.077 -2.181 0.150 3.209 0.065 2.351 38.107 2 AA_U32C33:G73A74_AA A 32 ? A 74 ? A 33 ? A 73 ? 1 A C 3 1_555 A G 43 4_555 A U 4 1_555 A A 42 4_555 -0.149 -1.557 3.195 0.497 -0.130 27.711 -3.219 0.429 3.199 -0.271 -1.038 27.716 3 AA_C33U34:A72G73_AA A 33 ? A 73 ? A 34 ? A 72 ? 1 A U 4 1_555 A A 42 4_555 A G 5 1_555 A C 41 4_555 -0.180 -1.763 2.981 -8.355 8.427 32.374 -4.101 -0.809 2.431 14.520 14.396 34.426 4 AA_U34G35:C71A72_AA A 34 ? A 72 ? A 35 ? A 71 ? 1 A G 5 1_555 A C 41 4_555 A U 6 1_555 A G 40 4_555 -0.141 -1.421 3.296 4.114 0.828 38.245 -2.259 0.725 3.234 1.260 -6.257 38.466 5 AA_G35U36:G70C71_AA A 35 ? A 71 ? A 36 ? A 70 ? 1 A U 6 1_555 A G 40 4_555 A U 7 1_555 A G 39 4_555 0.283 -2.106 3.048 8.568 6.736 35.426 -4.120 0.575 2.614 10.759 -13.686 37.013 6 AA_U36U37:G69G70_AA A 36 ? A 70 ? A 37 ? A 69 ? 1 A U 7 1_555 A G 39 4_555 A U 8 1_555 A A 38 4_555 -0.871 -2.286 3.009 -0.448 16.236 22.504 -7.542 1.744 1.145 36.165 0.999 27.692 7 AA_U37U38:A68G69_AA A 37 ? A 69 ? A 38 ? A 68 ? 1 A U 8 1_555 A A 38 4_555 A G 13 1_555 A C 36 4_555 -1.271 -2.525 6.092 4.766 16.050 78.121 -2.745 1.222 5.505 12.601 -3.742 79.614 8 AA_U38G43:C66A68_AA A 38 ? A 68 ? A 43 ? A 66 ? 1 A G 13 1_555 A C 36 4_555 A G 14 1_555 A C 35 4_555 -0.131 -2.114 3.349 -1.910 5.399 37.218 -3.964 -0.040 3.026 8.399 2.971 37.641 9 AA_G43G44:C65C66_AA A 43 ? A 66 ? A 44 ? A 65 ? 1 A G 14 1_555 A C 35 4_555 A U 15 1_555 A G 34 4_555 0.246 -1.632 3.197 0.888 -0.462 35.778 -2.590 -0.275 3.222 -0.752 -1.445 35.792 10 AA_G44U45:G64C65_AA A 44 ? A 65 ? A 45 ? A 64 ? 1 A U 15 1_555 A G 34 4_555 A C 16 1_555 A A 33 4_555 -0.763 -1.280 3.233 4.962 8.799 54.197 -1.880 1.105 2.934 9.564 -5.394 55.061 11 AA_U45C46:A63G64_AA A 45 ? A 64 ? A 46 ? A 63 ? 1 A C 16 1_555 A A 33 4_555 A A 17 1_555 A C 32 4_555 -4.712 -0.110 2.855 -2.539 3.130 6.077 -13.423 26.867 3.973 26.079 21.153 7.291 12 AA_C46A47:C62A63_AA A 46 ? A 63 ? A 47 ? A 62 ? 1 A A 17 1_555 A C 32 4_555 A G 18 1_555 A G 31 4_555 4.977 -1.480 2.797 2.123 6.928 28.436 -4.204 -9.438 2.724 13.822 -4.236 29.327 13 AA_A47G48:G61C62_AA A 47 ? A 62 ? A 48 ? A 61 ? 1 A G 18 1_555 A G 31 4_555 A G 19 1_555 A A 30 4_555 0.229 -1.402 3.275 1.775 4.341 53.430 -1.822 -0.144 3.166 4.817 -1.970 53.621 14 AA_G48G49:A60G61_AA A 48 ? A 61 ? A 49 ? A 60 ? 1 A G 19 1_555 A A 30 4_555 A U 20 1_555 A A 29 4_555 0.232 -2.074 2.940 -5.164 2.530 25.672 -5.144 -1.706 2.630 5.604 11.439 26.297 15 AA_G49U50:A59A60_AA A 49 ? A 60 ? A 50 ? A 59 ? 1 A U 20 1_555 A A 29 4_555 A C 21 1_555 A G 28 4_555 0.472 -1.861 3.407 -3.371 7.266 32.960 -4.333 -1.338 2.883 12.577 5.835 33.893 16 AA_U50C51:G58A59_AA A 50 ? A 59 ? A 51 ? A 58 ? 1 A C 21 1_555 A G 28 4_555 A C 22 1_555 A G 27 4_555 0.263 -2.036 3.473 0.082 3.605 39.464 -3.440 -0.379 3.282 5.326 -0.122 39.621 17 AA_C51C52:G57G58_AA A 51 ? A 58 ? A 52 ? A 57 ? 1 A C 22 1_555 A G 27 4_555 A G 23 1_555 A A 26 4_555 -0.276 -0.882 3.588 3.494 4.550 54.569 -1.252 0.526 3.488 4.948 -3.799 54.847 18 AA_C52G53:A56G57_AA A 52 ? A 57 ? A 53 ? A 56 ? 1 A G 23 1_555 A A 26 4_555 A G 24 1_555 A A 25 4_555 1.280 -0.942 2.861 7.980 8.213 31.604 -2.828 -1.053 2.770 14.498 -14.086 33.565 19 AA_G53G54:A55A56_AA A 53 ? A 56 ? A 54 ? A 55 ? 1 A G 24 1_555 A A 25 4_555 A A 25 1_555 A G 24 4_555 0.000 -2.406 4.165 0.000 -9.461 -3.699 26.862 0.000 -0.722 68.697 0.000 -10.157 20 AA_G54A55:G54A55_AA A 54 ? A 55 ? A 55 ? A 54 ? 1 A A 25 1_555 A G 24 4_555 A A 26 1_555 A G 23 4_555 -1.280 -0.942 2.861 -7.980 8.213 31.604 -2.828 1.053 2.770 14.498 14.085 33.565 21 AA_A55A56:G53G54_AA A 55 ? A 54 ? A 56 ? A 53 ? 1 A A 26 1_555 A G 23 4_555 A G 27 1_555 A C 22 4_555 0.276 -0.882 3.588 -3.494 4.550 54.569 -1.252 -0.526 3.488 4.948 3.799 54.847 22 AA_A56G57:C52G53_AA A 56 ? A 53 ? A 57 ? A 52 ? 1 A G 27 1_555 A C 22 4_555 A G 28 1_555 A C 21 4_555 -0.263 -2.036 3.473 -0.082 3.605 39.464 -3.440 0.379 3.282 5.326 0.122 39.621 23 AA_G57G58:C51C52_AA A 57 ? A 52 ? A 58 ? A 51 ? 1 A G 28 1_555 A C 21 4_555 A A 29 1_555 A U 20 4_555 -0.472 -1.861 3.407 3.371 7.266 32.960 -4.333 1.338 2.883 12.577 -5.835 33.893 24 AA_G58A59:U50C51_AA A 58 ? A 51 ? A 59 ? A 50 ? 1 A A 29 1_555 A U 20 4_555 A A 30 1_555 A G 19 4_555 -0.232 -2.074 2.940 5.164 2.530 25.672 -5.144 1.706 2.630 5.604 -11.439 26.297 25 AA_A59A60:G49U50_AA A 59 ? A 50 ? A 60 ? A 49 ? 1 A A 30 1_555 A G 19 4_555 A G 31 1_555 A G 18 4_555 -0.229 -1.402 3.275 -1.775 4.341 53.430 -1.822 0.144 3.166 4.817 1.970 53.620 26 AA_A60G61:G48G49_AA A 60 ? A 49 ? A 61 ? A 48 ? 1 A G 31 1_555 A G 18 4_555 A C 32 1_555 A A 17 4_555 -4.977 -1.480 2.797 -2.123 6.928 28.436 -4.204 9.438 2.724 13.822 4.236 29.327 27 AA_G61C62:A47G48_AA A 61 ? A 48 ? A 62 ? A 47 ? 1 A C 32 1_555 A A 17 4_555 A A 33 1_555 A C 16 4_555 4.712 -0.110 2.855 2.539 3.130 6.077 -13.424 -26.867 3.973 26.079 -21.153 7.291 28 AA_C62A63:C46A47_AA A 62 ? A 47 ? A 63 ? A 46 ? 1 A A 33 1_555 A C 16 4_555 A G 34 1_555 A U 15 4_555 0.763 -1.280 3.233 -4.962 8.799 54.197 -1.880 -1.105 2.934 9.564 5.394 55.061 29 AA_A63G64:U45C46_AA A 63 ? A 46 ? A 64 ? A 45 ? 1 A G 34 1_555 A U 15 4_555 A C 35 1_555 A G 14 4_555 -0.246 -1.632 3.197 -0.888 -0.462 35.778 -2.590 0.275 3.222 -0.752 1.445 35.792 30 AA_G64C65:G44U45_AA A 64 ? A 45 ? A 65 ? A 44 ? 1 A C 35 1_555 A G 14 4_555 A C 36 1_555 A G 13 4_555 0.131 -2.114 3.349 1.910 5.399 37.218 -3.964 0.040 3.026 8.399 -2.971 37.641 31 AA_C65C66:G43G44_AA A 65 ? A 44 ? A 66 ? A 43 ? 1 A C 36 1_555 A G 13 4_555 A A 38 1_555 A U 8 4_555 1.271 -2.525 6.092 -4.766 16.050 78.121 -2.745 -1.222 5.505 12.601 3.742 79.614 32 AA_C66A68:U38G43_AA A 66 ? A 43 ? A 68 ? A 38 ? 1 A A 38 1_555 A U 8 4_555 A G 39 1_555 A U 7 4_555 0.871 -2.286 3.009 0.448 16.236 22.504 -7.542 -1.744 1.145 36.165 -0.999 27.692 33 AA_A68G69:U37U38_AA A 68 ? A 38 ? A 69 ? A 37 ? 1 A G 39 1_555 A U 7 4_555 A G 40 1_555 A U 6 4_555 -0.283 -2.106 3.048 -8.568 6.736 35.426 -4.120 -0.575 2.614 10.759 13.686 37.013 34 AA_G69G70:U36U37_AA A 69 ? A 37 ? A 70 ? A 36 ? 1 A G 40 1_555 A U 6 4_555 A C 41 1_555 A G 5 4_555 0.141 -1.421 3.296 -4.114 0.828 38.245 -2.259 -0.725 3.234 1.260 6.257 38.466 35 AA_G70C71:G35U36_AA A 70 ? A 36 ? A 71 ? A 35 ? 1 A C 41 1_555 A G 5 4_555 A A 42 1_555 A U 4 4_555 0.180 -1.763 2.981 8.355 8.427 32.374 -4.101 0.809 2.431 14.520 -14.396 34.426 36 AA_C71A72:U34G35_AA A 71 ? A 35 ? A 72 ? A 34 ? 1 A A 42 1_555 A U 4 4_555 A G 43 1_555 A C 3 4_555 0.149 -1.557 3.195 -0.497 -0.130 27.711 -3.219 -0.429 3.199 -0.271 1.038 27.716 37 AA_A72G73:C33U34_AA A 72 ? A 34 ? A 73 ? A 33 ? 1 A G 43 1_555 A C 3 4_555 A A 44 1_555 A U 2 4_555 0.222 -1.421 3.204 1.535 0.042 38.077 -2.181 -0.150 3.209 0.065 -2.351 38.107 38 AA_G73A74:U32C33_AA A 73 ? A 33 ? A 74 ? A 32 ? 1 A A 44 1_555 A U 2 4_555 A PGP 45 1_555 A C 1 4_555 -0.236 -1.722 3.199 3.713 17.133 31.534 -4.864 0.831 1.992 28.901 -6.264 35.970 39 AA_A74PGP75:C31U32_AA A 74 ? A 32 ? A 75 ? A 31 ? # _atom_sites.entry_id 1DUH _atom_sites.fract_transf_matrix[1][1] 0.014348 _atom_sites.fract_transf_matrix[1][2] 0.008284 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016567 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011890 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C LU MG N O P S # loop_