HEADER ASPARTYL PROTEASE 15-SEP-96 1DUT TITLE FIV DUTP PYROPHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUTP PYROPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DUTPASE, DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE; COMPND 5 EC: 3.6.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FELINE IMMUNODEFICIENCY VIRUS; SOURCE 3 ORGANISM_TAXID: 11674; SOURCE 4 STRAIN: (ISOLATE PETALUMA); SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: TN5; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS POLYPROTEIN, HYDROLASE, ASPARTYL PROTEASE, ENDONUCLEASE, RNA-DIRECTED KEYWDS 2 DNA POLYMERASE, NUCLEOTIDE METABOLISM, ACID ANHYDRIDE HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.S.PRASAD,E.A.STURA,D.E.MCREE,G.S.LACO,C.HASSELKUS-LIGHT,J.H.ELDER, AUTHOR 2 C.D.STOUT REVDAT 6 07-FEB-24 1DUT 1 REMARK LINK REVDAT 5 21-MAR-18 1DUT 1 REMARK REVDAT 4 16-NOV-11 1DUT 1 HETATM REVDAT 3 13-JUL-11 1DUT 1 VERSN REVDAT 2 24-FEB-09 1DUT 1 VERSN REVDAT 1 27-JAN-97 1DUT 0 JRNL AUTH G.S.PRASAD,E.A.STURA,D.E.MCREE,G.S.LACO,C.HASSELKUS-LIGHT, JRNL AUTH 2 J.H.ELDER,C.D.STOUT JRNL TITL CRYSTAL STRUCTURE OF DUTP PYROPHOSPHATASE FROM FELINE JRNL TITL 2 IMMUNODEFICIENCY VIRUS. JRNL REF PROTEIN SCI. V. 5 2429 1996 JRNL REFN ISSN 0961-8368 JRNL PMID 8976551 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 23522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1774 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 2.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 DUTP PYROPHOSPHATASE IS AN INTERDIGITATED, FUNCTIONAL REMARK 3 TRIMER. IN THE STRUCTURE ONE TRIMER (CHAIN A) LIES ON A REMARK 3 CRYSTALLOGRAPHIC 6(3) AXIS AND ANOTHER TRIMER (CHAIN B) REMARK 3 LIES ON THE CRYSTALLOGRAPHIC THREE-FOLD AXIS. THE SPACE REMARK 3 GROUP IS P6(3) WITH 2 MONOMERS (CHAINS A AND B) IN THE REMARK 3 ASYMMETRIC UNIT. EACH MONOMER CONSISTS OF 117 RESIDUES REMARK 3 AND A MG2+ ION COORDINATED ON THE THREE-FOLD AXIS OF THE REMARK 3 TRIMER. THE C-TERMINAL 16 AMINO-ACIDS OF THE KNOWN REMARK 3 PRIMARY SEQUENCE ARE DISORDERED IN EACH UNIQUE MONOMER. REMARK 4 REMARK 4 1DUT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172944. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, CCP4 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116665 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 4.960 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.47500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.47500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.47500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 39.90000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 69.10883 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -39.90000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 69.10883 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 134 LIES ON A SPECIAL POSITION. REMARK 375 MG MG B 134 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 118 REMARK 465 ASP A 119 REMARK 465 SER A 120 REMARK 465 GLU A 121 REMARK 465 ARG A 122 REMARK 465 GLY A 123 REMARK 465 ASP A 124 REMARK 465 ASN A 125 REMARK 465 GLY A 126 REMARK 465 TYR A 127 REMARK 465 GLY A 128 REMARK 465 SER A 129 REMARK 465 THR A 130 REMARK 465 GLY A 131 REMARK 465 VAL A 132 REMARK 465 PHE A 133 REMARK 465 MET B 118 REMARK 465 ASP B 119 REMARK 465 SER B 120 REMARK 465 GLU B 121 REMARK 465 ARG B 122 REMARK 465 GLY B 123 REMARK 465 ASP B 124 REMARK 465 ASN B 125 REMARK 465 GLY B 126 REMARK 465 TYR B 127 REMARK 465 GLY B 128 REMARK 465 SER B 129 REMARK 465 THR B 130 REMARK 465 GLY B 131 REMARK 465 VAL B 132 REMARK 465 PHE B 133 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 106 CB CYS A 106 SG -0.098 REMARK 500 ARG B 12 CZ ARG B 12 NH1 0.095 REMARK 500 ARG B 12 CZ ARG B 12 NH2 0.087 REMARK 500 GLU B 112 CD GLU B 112 OE1 0.095 REMARK 500 GLU B 112 CD GLU B 112 OE2 0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 33 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 ILE A 83 CB - CA - C ANGL. DEV. = -15.6 DEGREES REMARK 500 ARG B 87 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 87 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL B 85 30.29 -92.36 REMARK 500 SER B 86 -169.37 -114.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 134 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 64 OD2 REMARK 620 2 ASP A 64 OD2 95.2 REMARK 620 3 ASP A 64 OD2 95.2 95.2 REMARK 620 4 HOH A 147 O 86.5 86.2 177.8 REMARK 620 5 HOH A 147 O 177.8 86.5 86.2 92.1 REMARK 620 6 HOH A 147 O 86.2 177.8 86.5 92.1 92.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 134 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 64 OD2 REMARK 620 2 ASP B 64 OD2 59.7 REMARK 620 3 ASP B 64 OD2 59.5 60.3 REMARK 620 4 HOH B 143 O 91.2 139.2 80.7 REMARK 620 5 HOH B 143 O 141.9 83.3 95.6 114.4 REMARK 620 6 HOH B 143 O 79.3 94.0 138.1 109.0 114.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 134 DBREF 1DUT A 1 133 UNP P16088 POL_FIVPE 711 843 DBREF 1DUT B 1 133 UNP P16088 POL_FIVPE 711 843 SEQRES 1 A 133 MET ILE ILE GLU GLY ASP GLY ILE LEU ASP LYS ARG SER SEQRES 2 A 133 GLU ASP ALA GLY TYR ASP LEU LEU ALA ALA LYS GLU ILE SEQRES 3 A 133 HIS LEU LEU PRO GLY GLU VAL LYS VAL ILE PRO THR GLY SEQRES 4 A 133 VAL LYS LEU MET LEU PRO LYS GLY TYR TRP GLY LEU ILE SEQRES 5 A 133 ILE GLY LYS SER SER ILE GLY SER LYS GLY LEU ASP VAL SEQRES 6 A 133 LEU GLY GLY VAL ILE ASP GLU GLY TYR ARG GLY GLU ILE SEQRES 7 A 133 GLY VAL ILE MET ILE ASN VAL SER ARG LYS SER ILE THR SEQRES 8 A 133 LEU MET GLU ARG GLN LYS ILE ALA GLN LEU ILE ILE LEU SEQRES 9 A 133 PRO CYS LYS HIS GLU VAL LEU GLU GLN GLY LYS VAL VAL SEQRES 10 A 133 MET ASP SER GLU ARG GLY ASP ASN GLY TYR GLY SER THR SEQRES 11 A 133 GLY VAL PHE SEQRES 1 B 133 MET ILE ILE GLU GLY ASP GLY ILE LEU ASP LYS ARG SER SEQRES 2 B 133 GLU ASP ALA GLY TYR ASP LEU LEU ALA ALA LYS GLU ILE SEQRES 3 B 133 HIS LEU LEU PRO GLY GLU VAL LYS VAL ILE PRO THR GLY SEQRES 4 B 133 VAL LYS LEU MET LEU PRO LYS GLY TYR TRP GLY LEU ILE SEQRES 5 B 133 ILE GLY LYS SER SER ILE GLY SER LYS GLY LEU ASP VAL SEQRES 6 B 133 LEU GLY GLY VAL ILE ASP GLU GLY TYR ARG GLY GLU ILE SEQRES 7 B 133 GLY VAL ILE MET ILE ASN VAL SER ARG LYS SER ILE THR SEQRES 8 B 133 LEU MET GLU ARG GLN LYS ILE ALA GLN LEU ILE ILE LEU SEQRES 9 B 133 PRO CYS LYS HIS GLU VAL LEU GLU GLN GLY LYS VAL VAL SEQRES 10 B 133 MET ASP SER GLU ARG GLY ASP ASN GLY TYR GLY SER THR SEQRES 11 B 133 GLY VAL PHE HET MG A 134 1 HET MG B 134 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *72(H2 O) HELIX 1 1 SER A 56 LYS A 61 1 6 HELIX 2 2 SER B 56 LYS B 61 1 6 SHEET 1 A 2 ILE A 26 LEU A 28 0 SHEET 2 A 2 ILE A 90 LEU A 92 -1 N LEU A 92 O ILE A 26 SHEET 1 B 3 VAL A 33 PRO A 37 0 SHEET 2 B 3 GLY A 79 ASN A 84 -1 N MET A 82 O LYS A 34 SHEET 3 B 3 LEU A 63 LEU A 66 -1 N LEU A 66 O ILE A 81 SHEET 1 C 3 TYR A 48 GLY A 54 0 SHEET 2 C 3 LYS A 97 PRO A 105 -1 N LEU A 104 O TRP A 49 SHEET 3 C 3 GLY A 17 LEU A 21 -1 N LEU A 20 O ILE A 98 SHEET 1 D 2 ILE B 2 GLU B 4 0 SHEET 2 D 2 LYS B 41 MET B 43 -1 N MET B 43 O ILE B 2 SHEET 1 E 2 ILE B 26 LEU B 28 0 SHEET 2 E 2 ILE B 90 LEU B 92 -1 N LEU B 92 O ILE B 26 SHEET 1 F 3 VAL B 33 PRO B 37 0 SHEET 2 F 3 GLY B 79 ASN B 84 -1 N MET B 82 O LYS B 34 SHEET 3 F 3 LEU B 63 LEU B 66 -1 N LEU B 66 O ILE B 81 SHEET 1 G 3 TYR B 48 GLY B 54 0 SHEET 2 G 3 LYS B 97 PRO B 105 -1 N LEU B 104 O TRP B 49 SHEET 3 G 3 GLY B 17 LEU B 21 -1 N LEU B 20 O ILE B 98 LINK OD2 ASP A 64 MG MG A 134 1555 1555 2.01 LINK OD2 ASP A 64 MG MG A 134 2555 1555 2.01 LINK OD2 ASP A 64 MG MG A 134 3555 1555 2.01 LINK MG MG A 134 O HOH A 147 1555 1555 1.70 LINK MG MG A 134 O HOH A 147 1555 2555 1.70 LINK MG MG A 134 O HOH A 147 1555 3555 1.70 LINK OD2 ASP B 64 MG MG B 134 1555 1555 2.78 LINK OD2 ASP B 64 MG MG B 134 3565 1555 2.70 LINK OD2 ASP B 64 MG MG B 134 2665 1555 2.73 LINK MG MG B 134 O HOH B 143 1555 1555 1.61 LINK MG MG B 134 O HOH B 143 1555 2665 1.50 LINK MG MG B 134 O HOH B 143 1555 3565 1.60 SITE 1 AC1 2 ASP A 64 HOH A 147 SITE 1 AC2 2 ASP B 64 HOH B 143 CRYST1 79.800 79.800 86.950 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012531 0.007235 0.000000 0.00000 SCALE2 0.000000 0.014470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011501 0.00000