data_1DVL
# 
_entry.id   1DVL 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.385 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1DVL         pdb_00001dvl 10.2210/pdb1dvl/pdb 
NDB   DD0024       ?            ?                   
RCSB  RCSB010410   ?            ?                   
WWPDB D_1000010410 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2002-03-29 
2 'Structure model' 1 1 2008-04-27 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2017-10-04 
5 'Structure model' 1 4 2024-02-07 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Refinement description'    
4 5 'Structure model' 'Data collection'           
5 5 'Structure model' 'Database references'       
6 5 'Structure model' 'Derived calculations'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' software       
2 5 'Structure model' chem_comp_atom 
3 5 'Structure model' chem_comp_bond 
4 5 'Structure model' database_2     
5 5 'Structure model' struct_site    
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 5 'Structure model' '_database_2.pdbx_DOI'                
2 5 'Structure model' '_database_2.pdbx_database_accession' 
3 5 'Structure model' '_struct_site.pdbx_auth_asym_id'      
4 5 'Structure model' '_struct_site.pdbx_auth_comp_id'      
5 5 'Structure model' '_struct_site.pdbx_auth_seq_id'       
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1DVL 
_pdbx_database_status.recvd_initial_deposition_date   2000-01-21 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Shi, K.'           1 
'Mitra, S.N.'       2 
'Sundaralingam, M.' 3 
# 
_citation.id                        primary 
_citation.title                     'Structure of the 1:1 netropsin-decamer d(CCIICICCII)2 complex with a single bound netropsin.' 
_citation.journal_abbrev            'Acta Crystallogr.,Sect.D' 
_citation.journal_volume            58 
_citation.page_first                601 
_citation.page_last                 606 
_citation.year                      2002 
_citation.journal_id_ASTM           ABCRE6 
_citation.country                   DK 
_citation.journal_id_ISSN           0907-4449 
_citation.journal_id_CSD            0766 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   11914483 
_citation.pdbx_database_id_DOI      10.1107/S0907444902001889 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Shi, K.'           1 ? 
primary 'Mitra, S.N.'       2 ? 
primary 'Sundaralingam, M.' 3 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn "5'-D(*CP*CP*IP*IP*CP*IP*CP*CP*IP*I)-3'" 2971.911 2  ? ? ? ? 
2 non-polymer syn NETROPSIN                                430.464  1  ? ? ? ? 
3 water       nat water                                    18.015   31 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DC)(DI)(DI)(DC)(DI)(DC)(DC)(DI)(DI)' 
_entity_poly.pdbx_seq_one_letter_code_can   CCIICICCII 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 NETROPSIN NT  
3 water     HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC n 
1 2  DC n 
1 3  DI n 
1 4  DI n 
1 5  DC n 
1 6  DI n 
1 7  DC n 
1 8  DC n 
1 9  DI n 
1 10 DI n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P'  307.197 
DI  'DNA linking' y "2'-DEOXYINOSINE-5'-MONOPHOSPHATE"  ? 'C10 H13 N4 O7 P' 332.207 
HOH non-polymer   . WATER                               ? 'H2 O'            18.015  
NT  non-polymer   . NETROPSIN                           ? 'C18 H26 N10 O3'  430.464 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC 1  1  1  DC C A . n 
A 1 2  DC 2  2  2  DC C A . n 
A 1 3  DI 3  3  3  DI I A . n 
A 1 4  DI 4  4  4  DI I A . n 
A 1 5  DC 5  5  5  DC C A . n 
A 1 6  DI 6  6  6  DI I A . n 
A 1 7  DC 7  7  7  DC C A . n 
A 1 8  DC 8  8  8  DC C A . n 
A 1 9  DI 9  9  9  DI I A . n 
A 1 10 DI 10 10 10 DI I A . n 
B 1 1  DC 1  11 11 DC C B . n 
B 1 2  DC 2  12 12 DC C B . n 
B 1 3  DI 3  13 13 DI I B . n 
B 1 4  DI 4  14 14 DI I B . n 
B 1 5  DC 5  15 15 DC C B . n 
B 1 6  DI 6  16 16 DI I B . n 
B 1 7  DC 7  17 17 DC C B . n 
B 1 8  DC 8  18 18 DC C B . n 
B 1 9  DI 9  19 19 DI I B . n 
B 1 10 DI 10 20 20 DI I B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 NT  1  25  25  NT  NT  A . 
D 3 HOH 1  103 103 HOH HOH A . 
D 3 HOH 2  106 106 HOH HOH A . 
D 3 HOH 3  107 107 HOH HOH A . 
D 3 HOH 4  113 113 HOH HOH A . 
D 3 HOH 5  115 115 HOH HOH A . 
D 3 HOH 6  121 121 HOH HOH A . 
D 3 HOH 7  125 125 HOH HOH A . 
D 3 HOH 8  128 128 HOH HOH A . 
D 3 HOH 9  129 129 HOH HOH A . 
D 3 HOH 10 130 130 HOH HOH A . 
E 3 HOH 1  101 101 HOH HOH B . 
E 3 HOH 2  102 102 HOH HOH B . 
E 3 HOH 3  105 105 HOH HOH B . 
E 3 HOH 4  108 108 HOH HOH B . 
E 3 HOH 5  109 109 HOH HOH B . 
E 3 HOH 6  110 110 HOH HOH B . 
E 3 HOH 7  111 111 HOH HOH B . 
E 3 HOH 8  112 112 HOH HOH B . 
E 3 HOH 9  114 114 HOH HOH B . 
E 3 HOH 10 116 116 HOH HOH B . 
E 3 HOH 11 117 117 HOH HOH B . 
E 3 HOH 12 118 118 HOH HOH B . 
E 3 HOH 13 119 119 HOH HOH B . 
E 3 HOH 14 120 120 HOH HOH B . 
E 3 HOH 15 122 122 HOH HOH B . 
E 3 HOH 16 123 123 HOH HOH B . 
E 3 HOH 17 124 124 HOH HOH B . 
E 3 HOH 18 126 126 HOH HOH B . 
E 3 HOH 19 127 127 HOH HOH B . 
E 3 HOH 20 131 131 HOH HOH B . 
E 3 HOH 21 132 132 HOH HOH B . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
X-PLOR 'model building' .   ? 1 
X-PLOR refinement       3.1 ? 2 
X-PLOR phasing          .   ? 3 
# 
_cell.entry_id           1DVL 
_cell.length_a           62.400 
_cell.length_b           24.470 
_cell.length_c           36.310 
_cell.angle_alpha        90.00 
_cell.angle_beta         110.09 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         1DVL 
_symmetry.space_group_name_H-M             'C 1 2 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     monoclinic 
_symmetry.Int_Tables_number                5 
# 
_exptl.entry_id          1DVL 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_percent_sol   40.81 
_exptl_crystal.density_Matthews      2.08 
_exptl_crystal.description           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.temp            293 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              6.5 
_exptl_crystal_grow.pdbx_details    
'4 MM DNA (SINGLE STRAND), 0.008M MGCL2, 0.04 M NA CACODYLATE (PH 6.5), 2MM NETROPSIN, VAPOR DIFFUSION, HANGING DROP at 293K' 
_exptl_crystal_grow.pdbx_pH_range   . 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 'SODIUM CACODYLATE' ? ? ? 
1 2 1 MGCL2               ? ? ? 
1 3 2 MGCL2               ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           293 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               'IMAGE PLATE' 
_diffrn_detector.type                   'RIGAKU RAXIS IIC' 
_diffrn_detector.pdbx_collection_date   ? 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    GRAPHITE 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.5418 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      'ROTATING ANODE' 
_diffrn_source.type                        RIGAKU 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             1.5418 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.entry_id                     1DVL 
_reflns.observed_criterion_sigma_I   1.0 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             ? 
_reflns.d_resolution_high            2.40 
_reflns.number_obs                   1795 
_reflns.number_all                   ? 
_reflns.percent_possible_obs         ? 
_reflns.pdbx_Rmerge_I_obs            0.0370000 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.R_free_details               ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_reflns_shell.d_res_high             2.40 
_reflns_shell.d_res_low              2.50 
_reflns_shell.percent_possible_all   ? 
_reflns_shell.Rmerge_I_obs           ? 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    ? 
_reflns_shell.pdbx_redundancy        ? 
_reflns_shell.percent_possible_obs   ? 
_reflns_shell.number_unique_all      ? 
_reflns_shell.pdbx_diffrn_id         ? 
_reflns_shell.pdbx_ordinal           1 
# 
_refine.entry_id                                 1DVL 
_refine.ls_number_reflns_obs                     1795 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          2.0 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             8.0 
_refine.ls_d_res_high                            2.4 
_refine.ls_percent_reflns_obs                    85.8 
_refine.ls_R_factor_obs                          0.1960000 
_refine.ls_R_factor_all                          0.1960000 
_refine.ls_R_factor_R_work                       0.1960000 
_refine.ls_R_factor_R_free                       0.2450000 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 10 
_refine.ls_number_reflns_R_free                  ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   394 
_refine_hist.pdbx_number_atoms_ligand         31 
_refine_hist.number_atoms_solvent             31 
_refine_hist.number_atoms_total               456 
_refine_hist.d_res_high                       2.4 
_refine_hist.d_res_low                        8.0 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
x_bond_d                0.013 ? ? ? 'X-RAY DIFFRACTION' ? 
x_bond_d_na             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_bond_d_prot           ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d               ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d_na            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_d_prot          ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg             2.1   ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg_na          ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_angle_deg_prot        ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d      18.6  ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d_na   ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_dihedral_angle_d_prot ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d      1.7   ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d_na   ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_improper_angle_d_prot ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_mcbond_it             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_mcangle_it            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_scbond_it             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
x_scangle_it            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_database_PDB_matrix.entry_id          1DVL 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1DVL 
_struct.title                     
'CRYSTAL STRUCTURE OF THE 1:1 NETROPSIN-DECAMER D(CCIICICCII)2 COMPLEX WITH ONLY ONE DRUG BOUND AT ONE END' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1DVL 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'DRUG BINDING, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 3 ? 
E N N 3 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1DVL 
_struct_ref.pdbx_db_accession          1DVL 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1DVL A 1 ? 10 ? 1DVL 1  ? 10 ? 1  10 
2 1 1DVL B 1 ? 10 ? 1DVL 11 ? 20 ? 11 20 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id                    1 
_struct_biol.pdbx_parent_biol_id   ? 
_struct_biol.details               ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A NT 25 ? 10 'BINDING SITE FOR RESIDUE NT A 25' 
1   ?        ? ?  ?  ? ?  ?                                  
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 10 DC A 2  ? DC A 2  . ? 1_555 ? 
2  AC1 10 DI A 3  ? DI A 3  . ? 1_555 ? 
3  AC1 10 DI A 4  ? DI A 4  . ? 1_555 ? 
4  AC1 10 DC A 5  ? DC A 5  . ? 1_555 ? 
5  AC1 10 DI A 6  ? DI A 6  . ? 1_555 ? 
6  AC1 10 DI B 6  ? DI B 16 . ? 1_555 ? 
7  AC1 10 DC B 7  ? DC B 17 . ? 1_555 ? 
8  AC1 10 DC B 8  ? DC B 18 . ? 1_555 ? 
9  AC1 10 DI B 9  ? DI B 19 . ? 1_555 ? 
10 AC1 10 DI B 10 ? DI B 20 . ? 1_555 ? 
# 
_pdbx_validate_close_contact.id               1 
_pdbx_validate_close_contact.PDB_model_num    1 
_pdbx_validate_close_contact.auth_atom_id_1   N1 
_pdbx_validate_close_contact.auth_asym_id_1   A 
_pdbx_validate_close_contact.auth_comp_id_1   DI 
_pdbx_validate_close_contact.auth_seq_id_1    4 
_pdbx_validate_close_contact.PDB_ins_code_1   ? 
_pdbx_validate_close_contact.label_alt_id_1   ? 
_pdbx_validate_close_contact.auth_atom_id_2   N3 
_pdbx_validate_close_contact.auth_asym_id_2   B 
_pdbx_validate_close_contact.auth_comp_id_2   DC 
_pdbx_validate_close_contact.auth_seq_id_2    17 
_pdbx_validate_close_contact.PDB_ins_code_2   ? 
_pdbx_validate_close_contact.label_alt_id_2   ? 
_pdbx_validate_close_contact.dist             2.12 
# 
_struct_site_keywords.site_id   1 
_struct_site_keywords.text      'MINOR GROOVE BINDER' 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DC  OP3    O N N 1   
DC  P      P N N 2   
DC  OP1    O N N 3   
DC  OP2    O N N 4   
DC  "O5'"  O N N 5   
DC  "C5'"  C N N 6   
DC  "C4'"  C N R 7   
DC  "O4'"  O N N 8   
DC  "C3'"  C N S 9   
DC  "O3'"  O N N 10  
DC  "C2'"  C N N 11  
DC  "C1'"  C N R 12  
DC  N1     N N N 13  
DC  C2     C N N 14  
DC  O2     O N N 15  
DC  N3     N N N 16  
DC  C4     C N N 17  
DC  N4     N N N 18  
DC  C5     C N N 19  
DC  C6     C N N 20  
DC  HOP3   H N N 21  
DC  HOP2   H N N 22  
DC  "H5'"  H N N 23  
DC  "H5''" H N N 24  
DC  "H4'"  H N N 25  
DC  "H3'"  H N N 26  
DC  "HO3'" H N N 27  
DC  "H2'"  H N N 28  
DC  "H2''" H N N 29  
DC  "H1'"  H N N 30  
DC  H41    H N N 31  
DC  H42    H N N 32  
DC  H5     H N N 33  
DC  H6     H N N 34  
DI  OP3    O N N 35  
DI  P      P N N 36  
DI  OP1    O N N 37  
DI  OP2    O N N 38  
DI  "O5'"  O N N 39  
DI  "C5'"  C N N 40  
DI  "C4'"  C N R 41  
DI  "O4'"  O N N 42  
DI  "C3'"  C N S 43  
DI  "O3'"  O N N 44  
DI  "C2'"  C N N 45  
DI  "C1'"  C N R 46  
DI  N9     N Y N 47  
DI  C8     C Y N 48  
DI  N7     N Y N 49  
DI  C5     C Y N 50  
DI  C6     C N N 51  
DI  O6     O N N 52  
DI  N1     N N N 53  
DI  C2     C N N 54  
DI  N3     N N N 55  
DI  C4     C Y N 56  
DI  HOP3   H N N 57  
DI  HOP2   H N N 58  
DI  "H5'"  H N N 59  
DI  "H5''" H N N 60  
DI  "H4'"  H N N 61  
DI  "H3'"  H N N 62  
DI  "HO3'" H N N 63  
DI  "H2'"  H N N 64  
DI  "H2''" H N N 65  
DI  "H1'"  H N N 66  
DI  H8     H N N 67  
DI  H1     H N N 68  
DI  H2     H N N 69  
HOH O      O N N 70  
HOH H1     H N N 71  
HOH H2     H N N 72  
NT  C1     C N N 73  
NT  N1     N N N 74  
NT  N2     N N N 75  
NT  N3     N N N 76  
NT  C2     C N N 77  
NT  C3     C N N 78  
NT  O1     O N N 79  
NT  N4     N N N 80  
NT  C4     C Y N 81  
NT  C5     C Y N 82  
NT  C6     C Y N 83  
NT  N5     N Y N 84  
NT  C8     C N N 85  
NT  C7     C Y N 86  
NT  C9     C N N 87  
NT  O2     O N N 88  
NT  N6     N N N 89  
NT  C10    C Y N 90  
NT  C11    C Y N 91  
NT  C12    C Y N 92  
NT  N7     N Y N 93  
NT  C14    C N N 94  
NT  C13    C Y N 95  
NT  C15    C N N 96  
NT  O3     O N N 97  
NT  N8     N N N 98  
NT  C16    C N N 99  
NT  C17    C N N 100 
NT  C18    C N N 101 
NT  N9     N N N 102 
NT  N10    N N N 103 
NT  HN1    H N N 104 
NT  HN21   H N N 105 
NT  HN22   H N N 106 
NT  HN3    H N N 107 
NT  H21    H N N 108 
NT  H22    H N N 109 
NT  HN4    H N N 110 
NT  H5     H N N 111 
NT  H81    H N N 112 
NT  H82    H N N 113 
NT  H83    H N N 114 
NT  H7     H N N 115 
NT  HN6    H N N 116 
NT  H11    H N N 117 
NT  H141   H N N 118 
NT  H142   H N N 119 
NT  H143   H N N 120 
NT  H13    H N N 121 
NT  HN8    H N N 122 
NT  H161   H N N 123 
NT  H162   H N N 124 
NT  H171   H N N 125 
NT  H172   H N N 126 
NT  HN9    H N N 127 
NT  HN01   H N N 128 
NT  HN02   H N N 129 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DC  OP3   P      sing N N 1   
DC  OP3   HOP3   sing N N 2   
DC  P     OP1    doub N N 3   
DC  P     OP2    sing N N 4   
DC  P     "O5'"  sing N N 5   
DC  OP2   HOP2   sing N N 6   
DC  "O5'" "C5'"  sing N N 7   
DC  "C5'" "C4'"  sing N N 8   
DC  "C5'" "H5'"  sing N N 9   
DC  "C5'" "H5''" sing N N 10  
DC  "C4'" "O4'"  sing N N 11  
DC  "C4'" "C3'"  sing N N 12  
DC  "C4'" "H4'"  sing N N 13  
DC  "O4'" "C1'"  sing N N 14  
DC  "C3'" "O3'"  sing N N 15  
DC  "C3'" "C2'"  sing N N 16  
DC  "C3'" "H3'"  sing N N 17  
DC  "O3'" "HO3'" sing N N 18  
DC  "C2'" "C1'"  sing N N 19  
DC  "C2'" "H2'"  sing N N 20  
DC  "C2'" "H2''" sing N N 21  
DC  "C1'" N1     sing N N 22  
DC  "C1'" "H1'"  sing N N 23  
DC  N1    C2     sing N N 24  
DC  N1    C6     sing N N 25  
DC  C2    O2     doub N N 26  
DC  C2    N3     sing N N 27  
DC  N3    C4     doub N N 28  
DC  C4    N4     sing N N 29  
DC  C4    C5     sing N N 30  
DC  N4    H41    sing N N 31  
DC  N4    H42    sing N N 32  
DC  C5    C6     doub N N 33  
DC  C5    H5     sing N N 34  
DC  C6    H6     sing N N 35  
DI  OP3   P      sing N N 36  
DI  OP3   HOP3   sing N N 37  
DI  P     OP1    doub N N 38  
DI  P     OP2    sing N N 39  
DI  P     "O5'"  sing N N 40  
DI  OP2   HOP2   sing N N 41  
DI  "O5'" "C5'"  sing N N 42  
DI  "C5'" "C4'"  sing N N 43  
DI  "C5'" "H5'"  sing N N 44  
DI  "C5'" "H5''" sing N N 45  
DI  "C4'" "O4'"  sing N N 46  
DI  "C4'" "C3'"  sing N N 47  
DI  "C4'" "H4'"  sing N N 48  
DI  "O4'" "C1'"  sing N N 49  
DI  "C3'" "O3'"  sing N N 50  
DI  "C3'" "C2'"  sing N N 51  
DI  "C3'" "H3'"  sing N N 52  
DI  "O3'" "HO3'" sing N N 53  
DI  "C2'" "C1'"  sing N N 54  
DI  "C2'" "H2'"  sing N N 55  
DI  "C2'" "H2''" sing N N 56  
DI  "C1'" N9     sing N N 57  
DI  "C1'" "H1'"  sing N N 58  
DI  N9    C8     sing Y N 59  
DI  N9    C4     sing Y N 60  
DI  C8    N7     doub Y N 61  
DI  C8    H8     sing N N 62  
DI  N7    C5     sing Y N 63  
DI  C5    C6     sing N N 64  
DI  C5    C4     doub Y N 65  
DI  C6    O6     doub N N 66  
DI  C6    N1     sing N N 67  
DI  N1    C2     sing N N 68  
DI  N1    H1     sing N N 69  
DI  C2    N3     doub N N 70  
DI  C2    H2     sing N N 71  
DI  N3    C4     sing N N 72  
HOH O     H1     sing N N 73  
HOH O     H2     sing N N 74  
NT  C1    N1     doub N N 75  
NT  C1    N2     sing N N 76  
NT  C1    N3     sing N N 77  
NT  N1    HN1    sing N N 78  
NT  N2    HN21   sing N N 79  
NT  N2    HN22   sing N N 80  
NT  N3    C2     sing N N 81  
NT  N3    HN3    sing N N 82  
NT  C2    C3     sing N N 83  
NT  C2    H21    sing N N 84  
NT  C2    H22    sing N N 85  
NT  C3    O1     doub N N 86  
NT  C3    N4     sing N N 87  
NT  N4    C4     sing N N 88  
NT  N4    HN4    sing N N 89  
NT  C4    C5     sing Y N 90  
NT  C4    C7     doub Y N 91  
NT  C5    C6     doub Y N 92  
NT  C5    H5     sing N N 93  
NT  C6    N5     sing Y N 94  
NT  C6    C9     sing N N 95  
NT  N5    C8     sing N N 96  
NT  N5    C7     sing Y N 97  
NT  C8    H81    sing N N 98  
NT  C8    H82    sing N N 99  
NT  C8    H83    sing N N 100 
NT  C7    H7     sing N N 101 
NT  C9    O2     doub N N 102 
NT  C9    N6     sing N N 103 
NT  N6    C10    sing N N 104 
NT  N6    HN6    sing N N 105 
NT  C10   C11    sing Y N 106 
NT  C10   C13    doub Y N 107 
NT  C11   C12    doub Y N 108 
NT  C11   H11    sing N N 109 
NT  C12   N7     sing Y N 110 
NT  C12   C15    sing N N 111 
NT  N7    C14    sing N N 112 
NT  N7    C13    sing Y N 113 
NT  C14   H141   sing N N 114 
NT  C14   H142   sing N N 115 
NT  C14   H143   sing N N 116 
NT  C13   H13    sing N N 117 
NT  C15   O3     doub N N 118 
NT  C15   N8     sing N N 119 
NT  N8    C16    sing N N 120 
NT  N8    HN8    sing N N 121 
NT  C16   C17    sing N N 122 
NT  C16   H161   sing N N 123 
NT  C16   H162   sing N N 124 
NT  C17   C18    sing N N 125 
NT  C17   H171   sing N N 126 
NT  C17   H172   sing N N 127 
NT  C18   N9     doub N N 128 
NT  C18   N10    sing N N 129 
NT  N9    HN9    sing N N 130 
NT  N10   HN01   sing N N 131 
NT  N10   HN02   sing N N 132 
# 
_atom_sites.entry_id                    1DVL 
_atom_sites.fract_transf_matrix[1][1]   0.016026 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.005861 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.040866 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.029325 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
N 
O 
P 
# 
loop_