HEADER ELECTRON TRANSPORT 22-JAN-00 1DVV TITLE SOLUTION STRUCTURE OF THE QUINTUPLE MUTANT OF CYTOCHROME C-551 FROM TITLE 2 PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C551; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PKK223-3 KEYWDS CYTOCHROME C, STABILITY, ELECTRON TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.HASEGAWA,S.UCHIYAMA,Y.TANIMOTO,M.MIZUTANI,Y.KOBAYASHI,Y.SAMBONGI, AUTHOR 2 Y.IGARASHI REVDAT 4 10-APR-24 1DVV 1 REMARK SEQADV REVDAT 3 14-MAR-18 1DVV 1 REMARK SEQADV REVDAT 2 24-FEB-09 1DVV 1 VERSN REVDAT 1 29-NOV-00 1DVV 0 JRNL AUTH J.HASEGAWA,S.UCHIYAMA,Y.TANIMOTO,M.MIZUTANI,Y.KOBAYASHI, JRNL AUTH 2 Y.SAMBONGI,Y.IGARASHI JRNL TITL SELECTED MUTATIONS IN A MESOPHILIC CYTOCHROME C CONFER THE JRNL TITL 2 STABILITY OF A THERMOPHILIC COUNTERPART. JRNL REF J.BIOL.CHEM. V. 275 37824 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10918067 JRNL DOI 10.1074/JBC.M005861200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DVV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-00. REMARK 100 THE DEPOSITION ID IS D_1000010419. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM CYTOCHROME REMARK 210 C551(F7A/V13M/F34Y/E43Y/V78I) REMARK 210 REDUCED WITH DITHIONITE; 1MM REMARK 210 CYTOCHROME C551(F7A/V13M/F34Y/ REMARK 210 E43Y/V78I) REDUCED WITH REMARK 210 DITHIONITE; 1MM CYTOCHROME REMARK 210 C551(F7A/V13M/F34Y/E43Y/V78I) U- REMARK 210 15N REDUCED WITH DITHIONITE; 1MM REMARK 210 CYTOCHROME C551(F7A/V13M/F34Y/ REMARK 210 E43Y/V78I) U-15N,13C REDUCED REMARK 210 WITH DITHIONITE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNHA; HNHB; 3D_13C,15N_SIMULTANOUSLY_SEPARATED REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 12 CAB HEM A 83 1.81 REMARK 500 SG CYS A 15 CAC HEM A 83 1.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 159.97 -48.68 REMARK 500 1 ILE A 18 -27.75 -37.79 REMARK 500 1 ASP A 19 -32.78 -155.24 REMARK 500 1 MET A 22 -117.79 -123.02 REMARK 500 1 ALA A 26 156.17 -42.28 REMARK 500 1 SER A 52 167.98 163.87 REMARK 500 1 GLN A 53 -161.14 -101.90 REMARK 500 1 VAL A 55 -62.92 -104.54 REMARK 500 1 PRO A 58 6.83 -68.94 REMARK 500 1 ALA A 65 35.72 -89.26 REMARK 500 1 SER A 67 172.82 -46.39 REMARK 500 1 GLN A 81 179.04 -50.51 REMARK 500 2 ILE A 18 -27.31 -38.66 REMARK 500 2 ASP A 19 -35.90 -148.65 REMARK 500 2 THR A 20 -179.29 -69.05 REMARK 500 2 MET A 22 -100.89 -78.82 REMARK 500 2 ALA A 26 151.24 -46.11 REMARK 500 2 ALA A 35 90.13 -51.27 REMARK 500 2 ALA A 38 39.46 -90.02 REMARK 500 2 SER A 52 168.13 164.02 REMARK 500 2 VAL A 55 -69.13 -98.28 REMARK 500 2 ALA A 65 36.37 -90.50 REMARK 500 2 SER A 67 152.84 -42.22 REMARK 500 2 GLN A 81 -155.47 37.83 REMARK 500 3 ASP A 19 -35.68 -152.21 REMARK 500 3 MET A 22 -95.22 -85.49 REMARK 500 3 ALA A 35 88.96 -54.86 REMARK 500 3 GLN A 37 157.63 -42.24 REMARK 500 3 PRO A 58 6.87 -69.44 REMARK 500 3 ALA A 65 30.32 -91.66 REMARK 500 3 SER A 67 179.69 -48.85 REMARK 500 4 ILE A 18 -27.96 -37.45 REMARK 500 4 ASP A 19 -34.46 -155.68 REMARK 500 4 MET A 22 -98.03 -124.73 REMARK 500 4 ALA A 26 150.97 -42.43 REMARK 500 4 ALA A 38 41.12 -89.42 REMARK 500 4 SER A 52 158.72 167.42 REMARK 500 4 GLN A 53 -164.82 -106.15 REMARK 500 4 VAL A 55 -69.25 -94.72 REMARK 500 4 SER A 67 157.22 -43.61 REMARK 500 5 ASP A 19 19.35 -162.22 REMARK 500 5 THR A 20 -166.40 -114.93 REMARK 500 5 MET A 22 -98.43 -97.89 REMARK 500 5 ALA A 26 163.23 -41.42 REMARK 500 5 ALA A 35 89.77 -62.21 REMARK 500 5 ALA A 38 40.29 -90.15 REMARK 500 5 SER A 52 167.07 166.28 REMARK 500 5 VAL A 55 -67.60 -91.58 REMARK 500 5 ALA A 65 30.68 -89.87 REMARK 500 5 SER A 67 -176.07 -50.99 REMARK 500 REMARK 500 THIS ENTRY HAS 192 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 83 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 16 NE2 REMARK 620 2 HEM A 83 NA 72.9 REMARK 620 3 HEM A 83 NB 101.7 89.0 REMARK 620 4 HEM A 83 NC 110.0 177.1 90.8 REMARK 620 5 HEM A 83 ND 77.5 90.8 179.2 89.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 83 DBREF 1DVV A 1 82 UNP P00099 CY551_PSEAE 23 104 SEQADV 1DVV ALA A 7 UNP P00099 PHE 29 ENGINEERED MUTATION SEQADV 1DVV MET A 13 UNP P00099 VAL 35 ENGINEERED MUTATION SEQADV 1DVV TYR A 34 UNP P00099 PHE 56 ENGINEERED MUTATION SEQADV 1DVV TYR A 43 UNP P00099 GLU 65 ENGINEERED MUTATION SEQADV 1DVV ILE A 78 UNP P00099 VAL 100 ENGINEERED MUTATION SEQRES 1 A 82 GLU ASP PRO GLU VAL LEU ALA LYS ASN LYS GLY CYS MET SEQRES 2 A 82 ALA CYS HIS ALA ILE ASP THR LYS MET VAL GLY PRO ALA SEQRES 3 A 82 TYR LYS ASP VAL ALA ALA LYS TYR ALA GLY GLN ALA GLY SEQRES 4 A 82 ALA GLU ALA TYR LEU ALA GLN ARG ILE LYS ASN GLY SER SEQRES 5 A 82 GLN GLY VAL TRP GLY PRO ILE PRO MET PRO PRO ASN ALA SEQRES 6 A 82 VAL SER ASP ASP GLU ALA GLN THR LEU ALA LYS TRP ILE SEQRES 7 A 82 LEU SER GLN LYS HET HEM A 83 74 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 HELIX 1 1 ASP A 2 LYS A 10 1 9 HELIX 2 2 GLY A 11 HIS A 16 1 6 HELIX 3 3 ALA A 26 ALA A 35 1 10 HELIX 4 4 GLY A 39 LYS A 49 1 11 HELIX 5 5 SER A 67 GLN A 81 1 15 LINK NE2 HIS A 16 FE HEM A 83 1555 1555 2.51 SITE 1 AC1 22 LYS A 10 GLY A 11 CYS A 12 CYS A 15 SITE 2 AC1 22 HIS A 16 VAL A 23 PRO A 25 LEU A 44 SITE 3 AC1 22 ARG A 47 ILE A 48 SER A 52 GLN A 53 SITE 4 AC1 22 VAL A 55 TRP A 56 GLY A 57 ILE A 59 SITE 5 AC1 22 PRO A 60 MET A 61 PRO A 62 ASN A 64 SITE 6 AC1 22 LEU A 74 ILE A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1