HEADER OXYGEN STORAGE/TRANSPORT 24-JAN-00 1DW0 TITLE STRUCTURE OF OXIDIZED SHP, AN OXYGEN BINDING CYTOCHROME C COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C; COMPND 3 CHAIN: A, B, C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 3 ORGANISM_TAXID: 1063 KEYWDS CYTOCHROME C, ASPARAGINE LIGATION, OXYGEN BINDING, DISULFIDE BRIDGE, KEYWDS 2 OXYGEN STORAGE-TRANSPORT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.LEYS,K.BACKERS,T.E.MEYER,W.R.HAGEN,M.A.CUSANOVICH,J.J.VAN BEEUMEN REVDAT 6 12-AUG-26 1DW0 1 COMPND REMARK FORMUL LINK REVDAT 5 30-OCT-24 1DW0 1 REMARK REVDAT 4 03-MAR-21 1DW0 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 HETSYN FORMUL LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 24-FEB-09 1DW0 1 VERSN REVDAT 2 27-DEC-00 1DW0 1 REMARK REVDAT 1 28-JUN-00 1DW0 0 JRNL AUTH D.LEYS,K.BACKERS,T.E.MEYER,W.R.HAGEN,M.A.CUSANOVICH, JRNL AUTH 2 J.J.VAN BEEUMEN JRNL TITL CRYSTAL STRUCTURES OF AN OXYGEN-BINDING CYTOCHROME C FROM JRNL TITL 2 RHODOBACTER SPHAEROIDES. JRNL REF J.BIOL.CHEM. V. 275 16050 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10821858 JRNL DOI 10.1074/JBC.275.21.16050 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 45463 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2273 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2390 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 139 REMARK 3 SOLVENT ATOMS : 424 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DW0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-00. REMARK 100 THE DEPOSITION ID IS D_1000010424. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-98 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LURE REMARK 200 BEAMLINE : DW32 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45463 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.67250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.74900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.83000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.67250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.74900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.83000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.67250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.74900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.83000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.67250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.74900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.83000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 THR A 34 OG1 CG2 REMARK 470 LYS A 37 CE NZ REMARK 470 ARG A 53 NE CZ NH1 NH2 REMARK 470 GLY B 1 N REMARK 470 LYS B 37 CD CE NZ REMARK 470 ARG B 58 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 LYS B 83 CE NZ REMARK 470 LYS C 37 CD CE NZ REMARK 470 LYS C 61 CG CD CE NZ REMARK 470 GLU C 62 CD OE1 OE2 REMARK 470 LYS C 83 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 46 CAC HEC B 113 2.05 REMARK 500 SG CYS C 46 CAC HEC C 113 2.06 REMARK 500 SG CYS A 46 CAC HEC A 113 2.07 REMARK 500 O PRO C 72 O HOH C 262 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 62 O HOH A 569 4556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 56 CB - CG - CD ANGL. DEV. = 21.6 DEGREES REMARK 500 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 80 CD - NE - CZ ANGL. DEV. = 23.9 DEGREES REMARK 500 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 80 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 GLY B 1 O - C - N ANGL. DEV. = -10.0 DEGREES REMARK 500 ASP B 2 C - N - CA ANGL. DEV. = 20.4 DEGREES REMARK 500 ARG B 26 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 53 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 74 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP B 96 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 THR C 44 N - CA - CB ANGL. DEV. = -14.9 DEGREES REMARK 500 ASP C 77 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG C 80 CD - NE - CZ ANGL. DEV. = 17.2 DEGREES REMARK 500 ARG C 80 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ASP C 96 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 2 -20.97 122.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 602 DISTANCE = 7.82 ANGSTROMS REMARK 525 HOH B 654 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 658 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH C 117 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH C 194 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH C 205 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH C 214 DISTANCE = 6.18 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 113 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 47 NE2 REMARK 620 2 HEC A 113 NA 97.0 REMARK 620 3 HEC A 113 NB 91.0 88.7 REMARK 620 4 HEC A 113 NC 86.4 176.4 90.2 REMARK 620 5 HEC A 113 ND 90.6 91.3 178.4 89.7 REMARK 620 6 ASN A 88 ND2 173.1 89.3 86.3 87.3 92.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 113 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 47 NE2 REMARK 620 2 HEC B 113 NA 95.2 REMARK 620 3 HEC B 113 NB 91.0 89.0 REMARK 620 4 HEC B 113 NC 87.1 177.6 90.2 REMARK 620 5 HEC B 113 ND 91.1 90.4 177.9 90.3 REMARK 620 6 ASN B 88 ND2 174.5 89.7 86.3 88.0 91.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 113 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 47 NE2 REMARK 620 2 HEC C 113 NA 98.1 REMARK 620 3 HEC C 113 NB 91.1 90.2 REMARK 620 4 HEC C 113 NC 84.1 177.8 89.5 REMARK 620 5 HEC C 113 ND 91.4 89.5 177.5 90.8 REMARK 620 6 ASN C 88 ND2 170.0 91.4 85.6 86.5 91.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC B 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC C 113 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DW1 RELATED DB: PDB REMARK 900 STRUCTURE OF CYANIDE COMPLEX OF SHP REMARK 900 RELATED ID: 1DW2 RELATED DB: PDB REMARK 900 STRUCTURE OF NITRIC OXIDE COMPLEX OF REDUCED SHP REMARK 900 RELATED ID: 1DW3 RELATED DB: PDB REMARK 900 STRUCTURE OF REDUCED SHP DBREF 1DW0 A 1 112 UNP P81238 SHP_RHOS4 1 112 DBREF 1DW0 B 1 112 UNP P81238 SHP_RHOS4 1 112 DBREF 1DW0 C 1 112 UNP P81238 SHP_RHOS4 1 112 SEQRES 1 A 112 GLY ASP THR SER PRO ALA GLN LEU ILE ALA GLY TYR GLU SEQRES 2 A 112 ALA ALA ALA GLY ALA PRO ALA ASP ALA GLU ARG GLY ARG SEQRES 3 A 112 ALA LEU PHE LEU SER THR GLN THR GLY GLY LYS PRO ASP SEQRES 4 A 112 THR PRO SER CYS THR THR CYS HIS GLY ALA ASP VAL THR SEQRES 5 A 112 ARG ALA GLY GLN THR ARG THR GLY LYS GLU ILE ALA PRO SEQRES 6 A 112 LEU ALA PRO SER ALA THR PRO ASP ARG PHE THR ASP SER SEQRES 7 A 112 ALA ARG VAL GLU LYS TRP LEU GLY ARG ASN CYS ASN SER SEQRES 8 A 112 VAL ILE GLY ARG ASP CYS THR PRO GLY GLU LYS ALA ASP SEQRES 9 A 112 LEU LEU ALA TRP LEU ALA ALA GLN SEQRES 1 B 112 GLY ASP THR SER PRO ALA GLN LEU ILE ALA GLY TYR GLU SEQRES 2 B 112 ALA ALA ALA GLY ALA PRO ALA ASP ALA GLU ARG GLY ARG SEQRES 3 B 112 ALA LEU PHE LEU SER THR GLN THR GLY GLY LYS PRO ASP SEQRES 4 B 112 THR PRO SER CYS THR THR CYS HIS GLY ALA ASP VAL THR SEQRES 5 B 112 ARG ALA GLY GLN THR ARG THR GLY LYS GLU ILE ALA PRO SEQRES 6 B 112 LEU ALA PRO SER ALA THR PRO ASP ARG PHE THR ASP SER SEQRES 7 B 112 ALA ARG VAL GLU LYS TRP LEU GLY ARG ASN CYS ASN SER SEQRES 8 B 112 VAL ILE GLY ARG ASP CYS THR PRO GLY GLU LYS ALA ASP SEQRES 9 B 112 LEU LEU ALA TRP LEU ALA ALA GLN SEQRES 1 C 112 GLY ASP THR SER PRO ALA GLN LEU ILE ALA GLY TYR GLU SEQRES 2 C 112 ALA ALA ALA GLY ALA PRO ALA ASP ALA GLU ARG GLY ARG SEQRES 3 C 112 ALA LEU PHE LEU SER THR GLN THR GLY GLY LYS PRO ASP SEQRES 4 C 112 THR PRO SER CYS THR THR CYS HIS GLY ALA ASP VAL THR SEQRES 5 C 112 ARG ALA GLY GLN THR ARG THR GLY LYS GLU ILE ALA PRO SEQRES 6 C 112 LEU ALA PRO SER ALA THR PRO ASP ARG PHE THR ASP SER SEQRES 7 C 112 ALA ARG VAL GLU LYS TRP LEU GLY ARG ASN CYS ASN SER SEQRES 8 C 112 VAL ILE GLY ARG ASP CYS THR PRO GLY GLU LYS ALA ASP SEQRES 9 C 112 LEU LEU ALA TRP LEU ALA ALA GLN HET SO4 A 500 5 HET HEC A 113 45 HET SO4 B 600 5 HET HEC B 113 43 HET HEC C 113 43 HETNAM SO4 SULFATE ION HETNAM HEC HEME C FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 HEC 3(C34 H36 FE N4 O4) FORMUL 9 HOH *424(H2 O) HELIX 1 1 SER A 4 GLY A 17 1 14 HELIX 2 2 ASP A 21 SER A 31 1 11 HELIX 3 3 CYS A 43 GLY A 48 1 6 HELIX 4 4 ASP A 77 GLY A 94 1 18 HELIX 5 5 THR A 98 ALA A 111 1 14 HELIX 6 6 SER B 4 GLY B 17 1 14 HELIX 7 7 ASP B 21 SER B 31 1 11 HELIX 8 8 CYS B 43 GLY B 48 1 6 HELIX 9 9 ASP B 77 GLY B 94 1 18 HELIX 10 10 THR B 98 ALA B 111 1 14 HELIX 11 11 SER C 4 GLY C 17 1 14 HELIX 12 12 ASP C 21 SER C 31 1 11 HELIX 13 13 CYS C 43 GLY C 48 1 6 HELIX 14 14 ASP C 77 GLY C 94 1 18 HELIX 15 15 THR C 98 ALA C 111 1 14 SHEET 1 A 2 GLY A 55 GLN A 56 0 SHEET 2 A 2 GLU A 62 ILE A 63 -1 O ILE A 63 N GLY A 55 SHEET 1 B 2 GLY B 55 GLN B 56 0 SHEET 2 B 2 GLU B 62 ILE B 63 -1 O ILE B 63 N GLY B 55 SHEET 1 C 2 GLY C 55 GLN C 56 0 SHEET 2 C 2 GLU C 62 ILE C 63 -1 O ILE C 63 N GLY C 55 SSBOND 1 CYS A 89 CYS A 97 1555 1555 1.98 SSBOND 2 CYS B 89 CYS B 97 1555 1555 1.98 SSBOND 3 CYS C 89 CYS C 97 1555 1555 1.99 LINK SG CYS A 43 CAB HEC A 113 1555 1555 1.95 LINK SG CYS B 43 CAB HEC B 113 1555 1555 1.95 LINK SG CYS C 43 CAB HEC C 113 1555 1555 1.89 LINK NE2 HIS A 47 FE HEC A 113 1555 1555 2.14 LINK ND2 ASN A 88 FE HEC A 113 1555 1555 2.20 LINK NE2 HIS B 47 FE HEC B 113 1555 1555 2.15 LINK ND2 ASN B 88 FE HEC B 113 1555 1555 2.15 LINK NE2 HIS C 47 FE HEC C 113 1555 1555 2.10 LINK ND2 ASN C 88 FE HEC C 113 1555 1555 2.09 SITE 1 AC1 6 ARG A 87 SER A 91 HOH A 544 HOH A 564 SITE 2 AC1 6 HOH A 592 HOH A 593 SITE 1 AC2 6 ARG B 87 ASN B 88 SER B 91 HEC B 113 SITE 2 AC2 6 HOH B 614 HOH B 692 SITE 1 AC3 15 CYS A 43 CYS A 46 HIS A 47 ARG A 74 SITE 2 AC3 15 PHE A 75 ARG A 80 VAL A 81 TRP A 84 SITE 3 AC3 15 ASN A 88 VAL A 92 HOH A 510 HOH A 527 SITE 4 AC3 15 HOH A 552 HOH A 561 HOH A 612 SITE 1 AC4 15 CYS B 43 CYS B 46 HIS B 47 ARG B 74 SITE 2 AC4 15 PHE B 75 ARG B 80 VAL B 81 TRP B 84 SITE 3 AC4 15 ASN B 88 VAL B 92 LEU B 105 SO4 B 600 SITE 4 AC4 15 HOH B 609 HOH B 622 HOH B 668 SITE 1 AC5 15 CYS C 43 CYS C 46 HIS C 47 ARG C 58 SITE 2 AC5 15 ILE C 63 ARG C 74 PHE C 75 ARG C 80 SITE 3 AC5 15 VAL C 81 TRP C 84 ASN C 88 HOH C 135 SITE 4 AC5 15 HOH C 150 HOH C 182 HOH C 242 CRYST1 83.345 103.498 113.660 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012000 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008800 0.00000 CONECT 287 2431 CONECT 317 2407 CONECT 626 2407 CONECT 632 690 CONECT 690 632 CONECT 1094 2479 CONECT 1124 2457 CONECT 1421 2457 CONECT 1427 1485 CONECT 1485 1427 CONECT 1890 2522 CONECT 1920 2500 CONECT 2224 2500 CONECT 2230 2288 CONECT 2288 2230 CONECT 2402 2403 2404 2405 2406 CONECT 2403 2402 CONECT 2404 2402 CONECT 2405 2402 CONECT 2406 2402 CONECT 2407 317 626 2412 2425 CONECT 2407 2433 2441 CONECT 2408 2413 2445 CONECT 2409 2416 2426 CONECT 2410 2429 2434 CONECT 2411 2437 2442 CONECT 2412 2407 2413 2416 CONECT 2413 2408 2412 2414 CONECT 2414 2413 2415 2418 CONECT 2415 2414 2416 2417 CONECT 2416 2409 2412 2415 CONECT 2417 2415 CONECT 2418 2414 2419 CONECT 2419 2418 2420 CONECT 2420 2419 2421 2422 2423 CONECT 2420 2424 CONECT 2421 2420 CONECT 2422 2420 CONECT 2423 2420 CONECT 2424 2420 CONECT 2425 2407 2426 2429 CONECT 2426 2409 2425 2427 CONECT 2427 2426 2428 2430 CONECT 2428 2427 2429 2431 CONECT 2429 2410 2425 2428 CONECT 2430 2427 CONECT 2431 287 2428 2432 CONECT 2432 2431 CONECT 2433 2407 2434 2437 CONECT 2434 2410 2433 2435 CONECT 2435 2434 2436 2438 CONECT 2436 2435 2437 2439 CONECT 2437 2411 2433 2436 CONECT 2438 2435 CONECT 2439 2436 2440 CONECT 2440 2439 CONECT 2441 2407 2442 2445 CONECT 2442 2411 2441 2443 CONECT 2443 2442 2444 2446 CONECT 2444 2443 2445 2447 CONECT 2445 2408 2441 2444 CONECT 2446 2443 CONECT 2447 2444 2448 CONECT 2448 2447 2449 CONECT 2449 2448 2450 2451 CONECT 2450 2449 CONECT 2451 2449 CONECT 2452 2453 2454 2455 2456 CONECT 2453 2452 CONECT 2454 2452 CONECT 2455 2452 CONECT 2456 2452 CONECT 2457 1124 1421 2462 2473 CONECT 2457 2481 2489 CONECT 2458 2463 2493 CONECT 2459 2466 2474 CONECT 2460 2477 2482 CONECT 2461 2485 2490 CONECT 2462 2457 2463 2466 CONECT 2463 2458 2462 2464 CONECT 2464 2463 2465 2468 CONECT 2465 2464 2466 2467 CONECT 2466 2459 2462 2465 CONECT 2467 2465 CONECT 2468 2464 2469 CONECT 2469 2468 2470 CONECT 2470 2469 2471 2472 CONECT 2471 2470 CONECT 2472 2470 CONECT 2473 2457 2474 2477 CONECT 2474 2459 2473 2475 CONECT 2475 2474 2476 2478 CONECT 2476 2475 2477 2479 CONECT 2477 2460 2473 2476 CONECT 2478 2475 CONECT 2479 1094 2476 2480 CONECT 2480 2479 CONECT 2481 2457 2482 2485 CONECT 2482 2460 2481 2483 CONECT 2483 2482 2484 2486 CONECT 2484 2483 2485 2487 CONECT 2485 2461 2481 2484 CONECT 2486 2483 CONECT 2487 2484 2488 CONECT 2488 2487 CONECT 2489 2457 2490 2493 CONECT 2490 2461 2489 2491 CONECT 2491 2490 2492 2494 CONECT 2492 2491 2493 2495 CONECT 2493 2458 2489 2492 CONECT 2494 2491 CONECT 2495 2492 2496 CONECT 2496 2495 2497 CONECT 2497 2496 2498 2499 CONECT 2498 2497 CONECT 2499 2497 CONECT 2500 1920 2224 2505 2516 CONECT 2500 2524 2532 CONECT 2501 2506 2536 CONECT 2502 2509 2517 CONECT 2503 2520 2525 CONECT 2504 2528 2533 CONECT 2505 2500 2506 2509 CONECT 2506 2501 2505 2507 CONECT 2507 2506 2508 2511 CONECT 2508 2507 2509 2510 CONECT 2509 2502 2505 2508 CONECT 2510 2508 CONECT 2511 2507 2512 CONECT 2512 2511 2513 CONECT 2513 2512 2514 2515 CONECT 2514 2513 CONECT 2515 2513 CONECT 2516 2500 2517 2520 CONECT 2517 2502 2516 2518 CONECT 2518 2517 2519 2521 CONECT 2519 2518 2520 2522 CONECT 2520 2503 2516 2519 CONECT 2521 2518 CONECT 2522 1890 2519 2523 CONECT 2523 2522 CONECT 2524 2500 2525 2528 CONECT 2525 2503 2524 2526 CONECT 2526 2525 2527 2529 CONECT 2527 2526 2528 2530 CONECT 2528 2504 2524 2527 CONECT 2529 2526 CONECT 2530 2527 2531 CONECT 2531 2530 CONECT 2532 2500 2533 2536 CONECT 2533 2504 2532 2534 CONECT 2534 2533 2535 2537 CONECT 2535 2534 2536 2538 CONECT 2536 2501 2532 2535 CONECT 2537 2534 CONECT 2538 2535 2539 CONECT 2539 2538 2540 CONECT 2540 2539 2541 2542 CONECT 2541 2540 CONECT 2542 2540 MASTER 409 0 5 15 6 0 16 6 2953 3 160 27 END