HEADER OXYGEN STORAGE/TRANSPORT 24-JAN-00 1DW2 TITLE STRUCTURE OF THE NITRIC OXIDE COMPLEX OF REDUCED SHP, AN OXYGEN TITLE 2 BINDING CYTOCHROME C COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C; COMPND 3 CHAIN: A, B, C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 3 ORGANISM_TAXID: 1063 KEYWDS CYTOCHROME C, NITRIC OXIDE, DISULFIDE BRIDGE, ASPARAGINE LIGATION, KEYWDS 2 OXYGEN STORAGE-TRANSPORT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.LEYS,K.BACKERS,T.E.MEYER,W.R.HAGEN,M.A.CUSANOVICH,J.J.VAN BEEUMEN REVDAT 4 06-NOV-24 1DW2 1 REMARK LINK REVDAT 3 24-FEB-09 1DW2 1 VERSN REVDAT 2 27-DEC-00 1DW2 1 REMARK REVDAT 1 28-JUN-00 1DW2 0 JRNL AUTH D.LEYS,K.BACKERS,T.E.MEYER,W.R.HAGEN,M.A.CUSANOVICH, JRNL AUTH 2 J.J.VAN BEEUMEN JRNL TITL CRYSTAL STRUCTURES OF AN OXYGEN-BINDING CYTOCHROME C FROM JRNL TITL 2 RHODOBACTER SPHAEROIDES. JRNL REF J.BIOL.CHEM. V. 275 16050 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10821858 JRNL DOI 10.1074/JBC.275.21.16050 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 25342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1267 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2390 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 135 REMARK 3 SOLVENT ATOMS : 272 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-00. REMARK 100 THE DEPOSITION ID IS D_1000010426. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-98 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25342 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 200 DATA REDUNDANCY : 6.640 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, CRYSTALS WERE REMARK 280 ANAEROBICALLY REDUCED AND NO ADDED BY REACTION OF DITHIONITE REMARK 280 WITH NITRITE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.67250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.74900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.83000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.67250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.74900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.83000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.67250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.74900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.83000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.67250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.74900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.83000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 THR A 34 OG1 CG2 REMARK 470 LYS A 37 CE NZ REMARK 470 ARG A 53 NE CZ NH1 NH2 REMARK 470 GLY B 1 N REMARK 470 LYS B 37 CD CE NZ REMARK 470 ARG B 58 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 LYS B 83 CE NZ REMARK 470 LYS C 37 CD CE NZ REMARK 470 LYS C 61 CG CD CE NZ REMARK 470 GLU C 62 CD OE1 OE2 REMARK 470 LYS C 83 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 43 CAB HEM B 113 1.86 REMARK 500 SG CYS C 43 CAB HEM C 113 1.90 REMARK 500 SG CYS B 46 CAC HEM B 113 1.99 REMARK 500 SG CYS A 43 CAB HEM A 113 2.03 REMARK 500 SG CYS C 46 CAC HEM C 113 2.06 REMARK 500 SG CYS A 46 CAC HEM A 113 2.07 REMARK 500 NH2 ARG C 80 O2D HEM C 113 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CA GLU B 62 O HOH A 182 4556 2.19 REMARK 500 OE1 GLN A 7 O HOH C 177 3656 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 6 CA ALA A 6 C 0.166 REMARK 500 ALA A 6 C ALA A 6 O -0.118 REMARK 500 ALA A 18 CA ALA A 18 CB 0.380 REMARK 500 ALA A 22 CA ALA A 22 CB -0.140 REMARK 500 THR A 34 CA THR A 34 CB 0.566 REMARK 500 ALA A 49 C ALA A 49 O 0.157 REMARK 500 ALA A 54 CA ALA A 54 CB 0.205 REMARK 500 ALA A 64 CA ALA A 64 CB 0.252 REMARK 500 ALA A 107 C ALA A 107 O -0.243 REMARK 500 ALA A 110 CA ALA A 110 CB 0.153 REMARK 500 ALA A 110 C ALA A 110 O -0.127 REMARK 500 ALA B 15 CA ALA B 15 C -0.179 REMARK 500 ALA B 15 C ALA B 15 O 0.222 REMARK 500 ALA B 22 CA ALA B 22 CB 0.160 REMARK 500 ALA B 22 C ALA B 22 O 0.138 REMARK 500 ALA B 27 CA ALA B 27 CB 0.180 REMARK 500 ALA B 27 C ALA B 27 O 0.164 REMARK 500 ALA B 54 CA ALA B 54 CB 0.192 REMARK 500 ARG B 58 CA ARG B 58 CB 0.268 REMARK 500 ARG B 58 CA ARG B 58 C -0.231 REMARK 500 ARG B 58 C ARG B 58 O 0.250 REMARK 500 LYS B 61 CA LYS B 61 C 0.417 REMARK 500 ALA B 64 CA ALA B 64 CB 0.144 REMARK 500 ALA B 79 CA ALA B 79 CB 0.145 REMARK 500 ALA B 107 CA ALA B 107 CB 0.211 REMARK 500 ALA C 6 CA ALA C 6 CB 0.203 REMARK 500 ALA C 14 CA ALA C 14 CB 0.226 REMARK 500 ALA C 14 CA ALA C 14 C -0.161 REMARK 500 ALA C 14 C ALA C 14 O 0.155 REMARK 500 ALA C 18 CA ALA C 18 CB 0.147 REMARK 500 ALA C 27 C ALA C 27 O 0.239 REMARK 500 ALA C 49 CA ALA C 49 C 0.189 REMARK 500 ALA C 54 CA ALA C 54 CB 0.541 REMARK 500 ALA C 54 C ALA C 54 O 0.228 REMARK 500 LYS C 61 CA LYS C 61 CB 0.257 REMARK 500 ALA C 67 CA ALA C 67 CB -0.162 REMARK 500 ALA C 79 CA ALA C 79 CB 0.507 REMARK 500 ALA C 110 CA ALA C 110 CB 0.196 REMARK 500 ALA C 111 CA ALA C 111 C 0.170 REMARK 500 ALA C 111 C ALA C 111 O -0.207 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 2 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 GLN A 7 CB - CG - CD ANGL. DEV. = 19.0 DEGREES REMARK 500 ALA A 14 N - CA - CB ANGL. DEV. = 8.5 DEGREES REMARK 500 ASP A 21 CB - CG - OD1 ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 24 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ALA A 27 N - CA - CB ANGL. DEV. = 9.2 DEGREES REMARK 500 THR A 34 CB - CA - C ANGL. DEV. = 25.0 DEGREES REMARK 500 THR A 34 CA - C - O ANGL. DEV. = -16.6 DEGREES REMARK 500 THR A 34 CA - C - N ANGL. DEV. = 18.9 DEGREES REMARK 500 ALA A 49 O - C - N ANGL. DEV. = -10.3 DEGREES REMARK 500 ASP A 50 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ALA A 54 CB - CA - C ANGL. DEV. = 9.5 DEGREES REMARK 500 GLN A 56 CB - CG - CD ANGL. DEV. = 21.7 DEGREES REMARK 500 ALA A 70 N - CA - CB ANGL. DEV. = -10.3 DEGREES REMARK 500 ALA A 70 CA - C - O ANGL. DEV. = -15.2 DEGREES REMARK 500 ALA A 70 CA - C - N ANGL. DEV. = 16.6 DEGREES REMARK 500 ASP A 73 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 80 CD - NE - CZ ANGL. DEV. = 50.3 DEGREES REMARK 500 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ALA A 103 N - CA - CB ANGL. DEV. = 10.6 DEGREES REMARK 500 ALA A 107 O - C - N ANGL. DEV. = 12.7 DEGREES REMARK 500 ALA A 111 N - CA - CB ANGL. DEV. = -9.2 DEGREES REMARK 500 ALA B 15 CA - C - N ANGL. DEV. = 24.1 DEGREES REMARK 500 ALA B 15 O - C - N ANGL. DEV. = -14.2 DEGREES REMARK 500 ALA B 16 CA - C - N ANGL. DEV. = 14.1 DEGREES REMARK 500 ALA B 16 O - C - N ANGL. DEV. = -11.9 DEGREES REMARK 500 ALA B 20 CB - CA - C ANGL. DEV. = -9.5 DEGREES REMARK 500 ASP B 21 CB - CG - OD1 ANGL. DEV. = 12.4 DEGREES REMARK 500 ASP B 21 CB - CG - OD2 ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG B 26 CD - NE - CZ ANGL. DEV. = 11.9 DEGREES REMARK 500 ARG B 26 NE - CZ - NH1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG B 26 NE - CZ - NH2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ALA B 27 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 ASP B 50 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG B 53 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 53 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ALA B 54 CB - CA - C ANGL. DEV. = -10.8 DEGREES REMARK 500 ARG B 58 CB - CA - C ANGL. DEV. = 16.1 DEGREES REMARK 500 ARG B 58 N - CA - CB ANGL. DEV. = -19.1 DEGREES REMARK 500 ARG B 58 CA - C - N ANGL. DEV. = 17.7 DEGREES REMARK 500 ARG B 58 O - C - N ANGL. DEV. = -16.7 DEGREES REMARK 500 LYS B 61 CA - C - O ANGL. DEV. = 23.4 DEGREES REMARK 500 LYS B 61 CA - C - N ANGL. DEV. = -25.3 DEGREES REMARK 500 GLU B 62 CA - C - O ANGL. DEV. = -13.2 DEGREES REMARK 500 THR B 71 CA - CB - OG1 ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG B 74 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 74 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 GLN B 112 CA - C - O ANGL. DEV. = -12.9 DEGREES REMARK 500 ALA C 14 O - C - N ANGL. DEV. = -11.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 72 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 2 -31.55 105.46 REMARK 500 GLU B 62 114.43 -36.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 113 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 47 NE2 REMARK 620 2 HEM A 113 NA 90.5 REMARK 620 3 HEM A 113 NB 89.8 90.5 REMARK 620 4 HEM A 113 NC 86.4 176.8 89.6 REMARK 620 5 HEM A 113 ND 89.8 90.5 179.0 89.4 REMARK 620 6 NO A 114 N 172.6 96.9 89.7 86.2 90.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 113 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 47 NE2 REMARK 620 2 HEM B 113 NA 92.2 REMARK 620 3 HEM B 113 NB 93.8 90.9 REMARK 620 4 HEM B 113 NC 83.5 175.6 90.2 REMARK 620 5 HEM B 113 ND 85.8 90.4 178.7 88.5 REMARK 620 6 NO B 114 N 175.8 91.8 87.2 92.4 93.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 113 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 47 NE2 REMARK 620 2 HEM C 113 NA 93.7 REMARK 620 3 HEM C 113 NB 89.0 89.6 REMARK 620 4 HEM C 113 NC 84.5 177.9 89.4 REMARK 620 5 HEM C 113 ND 91.2 90.0 179.5 91.0 REMARK 620 6 NO C 114 N 168.8 97.5 90.2 84.3 89.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO A 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO B 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO C 114 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DW0 RELATED DB: PDB REMARK 900 STRUCTURE OF OXIDIZED UNCOMPLEXED SHP REMARK 900 RELATED ID: 1DW1 RELATED DB: PDB REMARK 900 STRUCTURE OF CYANIDE COMPLEX OF SHP REMARK 900 RELATED ID: 1DW3 RELATED DB: PDB REMARK 900 STRUCTURE OF REDUCED SHP DBREF 1DW2 A 1 112 UNP P81238 SHP_RHOS4 1 112 DBREF 1DW2 B 1 112 UNP P81238 SHP_RHOS4 1 112 DBREF 1DW2 C 1 112 UNP P81238 SHP_RHOS4 1 112 SEQRES 1 A 112 GLY ASP THR SER PRO ALA GLN LEU ILE ALA GLY TYR GLU SEQRES 2 A 112 ALA ALA ALA GLY ALA PRO ALA ASP ALA GLU ARG GLY ARG SEQRES 3 A 112 ALA LEU PHE LEU SER THR GLN THR GLY GLY LYS PRO ASP SEQRES 4 A 112 THR PRO SER CYS THR THR CYS HIS GLY ALA ASP VAL THR SEQRES 5 A 112 ARG ALA GLY GLN THR ARG THR GLY LYS GLU ILE ALA PRO SEQRES 6 A 112 LEU ALA PRO SER ALA THR PRO ASP ARG PHE THR ASP SER SEQRES 7 A 112 ALA ARG VAL GLU LYS TRP LEU GLY ARG ASN CYS ASN SER SEQRES 8 A 112 VAL ILE GLY ARG ASP CYS THR PRO GLY GLU LYS ALA ASP SEQRES 9 A 112 LEU LEU ALA TRP LEU ALA ALA GLN SEQRES 1 B 112 GLY ASP THR SER PRO ALA GLN LEU ILE ALA GLY TYR GLU SEQRES 2 B 112 ALA ALA ALA GLY ALA PRO ALA ASP ALA GLU ARG GLY ARG SEQRES 3 B 112 ALA LEU PHE LEU SER THR GLN THR GLY GLY LYS PRO ASP SEQRES 4 B 112 THR PRO SER CYS THR THR CYS HIS GLY ALA ASP VAL THR SEQRES 5 B 112 ARG ALA GLY GLN THR ARG THR GLY LYS GLU ILE ALA PRO SEQRES 6 B 112 LEU ALA PRO SER ALA THR PRO ASP ARG PHE THR ASP SER SEQRES 7 B 112 ALA ARG VAL GLU LYS TRP LEU GLY ARG ASN CYS ASN SER SEQRES 8 B 112 VAL ILE GLY ARG ASP CYS THR PRO GLY GLU LYS ALA ASP SEQRES 9 B 112 LEU LEU ALA TRP LEU ALA ALA GLN SEQRES 1 C 112 GLY ASP THR SER PRO ALA GLN LEU ILE ALA GLY TYR GLU SEQRES 2 C 112 ALA ALA ALA GLY ALA PRO ALA ASP ALA GLU ARG GLY ARG SEQRES 3 C 112 ALA LEU PHE LEU SER THR GLN THR GLY GLY LYS PRO ASP SEQRES 4 C 112 THR PRO SER CYS THR THR CYS HIS GLY ALA ASP VAL THR SEQRES 5 C 112 ARG ALA GLY GLN THR ARG THR GLY LYS GLU ILE ALA PRO SEQRES 6 C 112 LEU ALA PRO SER ALA THR PRO ASP ARG PHE THR ASP SER SEQRES 7 C 112 ALA ARG VAL GLU LYS TRP LEU GLY ARG ASN CYS ASN SER SEQRES 8 C 112 VAL ILE GLY ARG ASP CYS THR PRO GLY GLU LYS ALA ASP SEQRES 9 C 112 LEU LEU ALA TRP LEU ALA ALA GLN HET HEM A 113 45 HET NO A 114 2 HET HEM B 113 43 HET NO B 114 2 HET HEM C 113 43 HET NO C 114 2 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM NO NITRIC OXIDE HETSYN HEM HEME HETSYN NO NITROGEN MONOXIDE FORMUL 4 HEM 3(C34 H32 FE N4 O4) FORMUL 5 NO 3(N O) FORMUL 10 HOH *272(H2 O) HELIX 1 1 SER A 4 GLY A 17 1 14 HELIX 2 2 ASP A 21 SER A 31 1 11 HELIX 3 3 CYS A 43 GLY A 48 1 6 HELIX 4 4 ASP A 77 GLY A 94 1 18 HELIX 5 5 THR A 98 ALA A 110 1 13 HELIX 6 6 SER B 4 GLY B 17 1 14 HELIX 7 7 ASP B 21 SER B 31 1 11 HELIX 8 8 CYS B 43 GLY B 48 1 6 HELIX 9 9 ASP B 77 GLY B 94 1 18 HELIX 10 10 THR B 98 ALA B 110 1 13 HELIX 11 11 SER C 4 GLY C 17 1 14 HELIX 12 12 ASP C 21 SER C 31 1 11 HELIX 13 13 CYS C 43 GLY C 48 1 6 HELIX 14 14 ASP C 77 GLY C 94 1 18 HELIX 15 15 THR C 98 ALA C 111 1 14 SHEET 1 A 2 GLY A 55 GLN A 56 0 SHEET 2 A 2 GLU A 62 ILE A 63 -1 O ILE A 63 N GLY A 55 SHEET 1 B 2 GLY B 55 GLN B 56 0 SHEET 2 B 2 GLU B 62 ILE B 63 -1 O ILE B 63 N GLY B 55 SHEET 1 C 2 GLY C 55 GLN C 56 0 SHEET 2 C 2 GLU C 62 ILE C 63 -1 O ILE C 63 N GLY C 55 SSBOND 1 CYS A 89 CYS A 97 1555 1555 2.04 SSBOND 2 CYS B 89 CYS B 97 1555 1555 1.95 SSBOND 3 CYS C 89 CYS C 97 1555 1555 2.00 LINK NE2 HIS A 47 FE HEM A 113 1555 1555 2.16 LINK FE HEM A 113 N NO A 114 1555 1555 1.83 LINK NE2 HIS B 47 FE HEM B 113 1555 1555 2.25 LINK FE HEM B 113 N NO B 114 1555 1555 1.88 LINK NE2 HIS C 47 FE HEM C 113 1555 1555 2.23 LINK FE HEM C 113 N NO C 114 1555 1555 1.76 SITE 1 AC1 15 CYS A 43 CYS A 46 HIS A 47 ARG A 74 SITE 2 AC1 15 PHE A 75 ARG A 80 VAL A 81 TRP A 84 SITE 3 AC1 15 ASN A 88 VAL A 92 NO A 114 HOH A 123 SITE 4 AC1 15 HOH A 137 HOH A 157 HOH A 187 SITE 1 AC2 3 TRP A 84 ASN A 88 HEM A 113 SITE 1 AC3 14 CYS B 43 CYS B 46 HIS B 47 ARG B 74 SITE 2 AC3 14 PHE B 75 ARG B 80 VAL B 81 TRP B 84 SITE 3 AC3 14 ASN B 88 LEU B 105 NO B 114 HOH B 122 SITE 4 AC3 14 HOH B 135 HOH B 172 SITE 1 AC4 4 TRP B 84 LEU B 85 ASN B 88 HEM B 113 SITE 1 AC5 14 CYS C 43 CYS C 46 HIS C 47 ARG C 58 SITE 2 AC5 14 ILE C 63 ARG C 74 PHE C 75 ARG C 80 SITE 3 AC5 14 TRP C 84 ASN C 88 LEU C 105 NO C 114 SITE 4 AC5 14 HOH C 132 HOH C 146 SITE 1 AC6 4 TRP C 84 LEU C 85 ASN C 88 HEM C 113 CRYST1 83.345 103.498 113.660 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012000 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008800 0.00000