data_1DYL
#
_entry.id 1DYL
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.397
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1DYL pdb_00001dyl 10.2210/pdb1dyl/pdb
PDBE EBI-4222 ? ?
WWPDB D_1290004222 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2000-08-18
2 'Structure model' 1 1 2011-05-07
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2017-08-30
5 'Structure model' 1 4 2018-01-31
6 'Structure model' 1 5 2019-12-18
7 'Structure model' 1 6 2024-10-16
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Experimental preparation'
5 4 'Structure model' 'Refinement description'
6 5 'Structure model' 'Data processing'
7 5 'Structure model' Other
8 6 'Structure model' Other
9 7 'Structure model' 'Data collection'
10 7 'Structure model' 'Database references'
11 7 'Structure model' 'Derived calculations'
12 7 'Structure model' 'Refinement description'
13 7 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' em_3d_fitting
2 4 'Structure model' em_sample_support
3 4 'Structure model' em_software
4 5 'Structure model' cell
5 5 'Structure model' em_software
6 6 'Structure model' atom_sites
7 7 'Structure model' chem_comp_atom
8 7 'Structure model' chem_comp_bond
9 7 'Structure model' database_2
10 7 'Structure model' em_3d_fitting_list
11 7 'Structure model' pdbx_entry_details
12 7 'Structure model' pdbx_initial_refinement_model
13 7 'Structure model' pdbx_modification_feature
14 7 'Structure model' pdbx_struct_oper_list
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_em_3d_fitting.target_criteria'
2 4 'Structure model' '_em_sample_support.grid_material'
3 4 'Structure model' '_em_sample_support.grid_mesh_size'
4 4 'Structure model' '_em_software.fitting_id'
5 4 'Structure model' '_em_software.image_processing_id'
6 4 'Structure model' '_em_software.name'
7 5 'Structure model' '_cell.Z_PDB'
8 5 'Structure model' '_cell.length_a'
9 5 'Structure model' '_cell.length_b'
10 5 'Structure model' '_cell.length_c'
11 5 'Structure model' '_em_software.details'
12 5 'Structure model' '_em_software.name'
13 6 'Structure model' '_atom_sites.fract_transf_matrix[1][1]'
14 6 'Structure model' '_atom_sites.fract_transf_matrix[2][2]'
15 6 'Structure model' '_atom_sites.fract_transf_matrix[3][3]'
16 7 'Structure model' '_database_2.pdbx_DOI'
17 7 'Structure model' '_database_2.pdbx_database_accession'
18 7 'Structure model' '_em_3d_fitting_list.accession_code'
19 7 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id'
20 7 'Structure model' '_em_3d_fitting_list.source_name'
21 7 'Structure model' '_em_3d_fitting_list.type'
22 7 'Structure model' '_pdbx_entry_details.has_protein_modification'
23 7 'Structure model' '_pdbx_struct_oper_list.name'
24 7 'Structure model' '_pdbx_struct_oper_list.symmetry_operation'
25 7 'Structure model' '_pdbx_struct_oper_list.type'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1DYL
_pdbx_database_status.deposit_site PDBE
_pdbx_database_status.process_site PDBE
_pdbx_database_status.SG_entry .
_pdbx_database_status.recvd_initial_deposition_date 2000-02-02
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.content_type
_pdbx_database_related.details
PDB 1VCQ unspecified 'SEMLIKI FOREST VIRUS CAPSID PROTEIN (CRYSTAL FORM II)'
PDB 1VCP unspecified 'SEMLIKI FOREST VIRUS CAPSID PROTEIN (CRYSTAL FORM I)'
EMDB EMD-1015 'associated EM volume' 'SEMLIKI FOREST VIRUS VOLUME DATA'
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Mancini, E.J.' 1
'Clarke, M.' 2
'Gowen, B.E.' 3
'Rutten, T.' 4
'Fuller, S.D.' 5
#
_citation.id primary
_citation.title
'Cryo-Electron Microscopy Reveals the Functional Organization of an Enveloped Virus, Semliki Forest Virus.'
_citation.journal_abbrev Mol.Cell
_citation.journal_volume 5
_citation.page_first 255
_citation.page_last 266
_citation.year 2000
_citation.journal_id_ASTM MOCEFL
_citation.country US
_citation.journal_id_ISSN 1097-2765
_citation.journal_id_CSD 2168
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 10882067
_citation.pdbx_database_id_DOI '10.1016/S1097-2765(00)80421-9'
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Mancini, E.J.' 1 ?
primary 'Clarke, M.' 2 ?
primary 'Gowen, B.E.' 3 ?
primary 'Rutten, T.' 4 ?
primary 'Fuller, S.D.' 5 ?
#
_entity.id 1
_entity.type polymer
_entity.src_method nat
_entity.pdbx_description 'NUCLEOCAPSID PROTEIN'
_entity.formula_weight 16252.439
_entity.pdbx_number_of_molecules 4
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment ?
_entity.details ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;CIFEVKHEGKVTGYACLVGDKVMKPAHVKGVIDNADLAKLAFKKSSKYDLECAQIPVHMRSDASKYTHEKPEGHYNWHHG
AVQYSGGRFTIPTGAGKPGDSGRPIFDNKGRVVAIVLGGANEGSRTALSVVTWNKDMVTRVTPEGSEEW
;
_entity_poly.pdbx_seq_one_letter_code_can
;CIFEVKHEGKVTGYACLVGDKVMKPAHVKGVIDNADLAKLAFKKSSKYDLECAQIPVHMRSDASKYTHEKPEGHYNWHHG
AVQYSGGRFTIPTGAGKPGDSGRPIFDNKGRVVAIVLGGANEGSRTALSVVTWNKDMVTRVTPEGSEEW
;
_entity_poly.pdbx_strand_id A,B,C,D
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 CYS n
1 2 ILE n
1 3 PHE n
1 4 GLU n
1 5 VAL n
1 6 LYS n
1 7 HIS n
1 8 GLU n
1 9 GLY n
1 10 LYS n
1 11 VAL n
1 12 THR n
1 13 GLY n
1 14 TYR n
1 15 ALA n
1 16 CYS n
1 17 LEU n
1 18 VAL n
1 19 GLY n
1 20 ASP n
1 21 LYS n
1 22 VAL n
1 23 MET n
1 24 LYS n
1 25 PRO n
1 26 ALA n
1 27 HIS n
1 28 VAL n
1 29 LYS n
1 30 GLY n
1 31 VAL n
1 32 ILE n
1 33 ASP n
1 34 ASN n
1 35 ALA n
1 36 ASP n
1 37 LEU n
1 38 ALA n
1 39 LYS n
1 40 LEU n
1 41 ALA n
1 42 PHE n
1 43 LYS n
1 44 LYS n
1 45 SER n
1 46 SER n
1 47 LYS n
1 48 TYR n
1 49 ASP n
1 50 LEU n
1 51 GLU n
1 52 CYS n
1 53 ALA n
1 54 GLN n
1 55 ILE n
1 56 PRO n
1 57 VAL n
1 58 HIS n
1 59 MET n
1 60 ARG n
1 61 SER n
1 62 ASP n
1 63 ALA n
1 64 SER n
1 65 LYS n
1 66 TYR n
1 67 THR n
1 68 HIS n
1 69 GLU n
1 70 LYS n
1 71 PRO n
1 72 GLU n
1 73 GLY n
1 74 HIS n
1 75 TYR n
1 76 ASN n
1 77 TRP n
1 78 HIS n
1 79 HIS n
1 80 GLY n
1 81 ALA n
1 82 VAL n
1 83 GLN n
1 84 TYR n
1 85 SER n
1 86 GLY n
1 87 GLY n
1 88 ARG n
1 89 PHE n
1 90 THR n
1 91 ILE n
1 92 PRO n
1 93 THR n
1 94 GLY n
1 95 ALA n
1 96 GLY n
1 97 LYS n
1 98 PRO n
1 99 GLY n
1 100 ASP n
1 101 SER n
1 102 GLY n
1 103 ARG n
1 104 PRO n
1 105 ILE n
1 106 PHE n
1 107 ASP n
1 108 ASN n
1 109 LYS n
1 110 GLY n
1 111 ARG n
1 112 VAL n
1 113 VAL n
1 114 ALA n
1 115 ILE n
1 116 VAL n
1 117 LEU n
1 118 GLY n
1 119 GLY n
1 120 ALA n
1 121 ASN n
1 122 GLU n
1 123 GLY n
1 124 SER n
1 125 ARG n
1 126 THR n
1 127 ALA n
1 128 LEU n
1 129 SER n
1 130 VAL n
1 131 VAL n
1 132 THR n
1 133 TRP n
1 134 ASN n
1 135 LYS n
1 136 ASP n
1 137 MET n
1 138 VAL n
1 139 THR n
1 140 ARG n
1 141 VAL n
1 142 THR n
1 143 PRO n
1 144 GLU n
1 145 GLY n
1 146 SER n
1 147 GLU n
1 148 GLU n
1 149 TRP n
#
_entity_src_nat.entity_id 1
_entity_src_nat.pdbx_src_id 1
_entity_src_nat.pdbx_alt_source_flag sample
_entity_src_nat.pdbx_beg_seq_num ?
_entity_src_nat.pdbx_end_seq_num ?
_entity_src_nat.common_name SFV
_entity_src_nat.pdbx_organism_scientific 'SEMLIKI FOREST VIRUS'
_entity_src_nat.pdbx_ncbi_taxonomy_id 11033
_entity_src_nat.genus ?
_entity_src_nat.species ?
_entity_src_nat.strain ?
_entity_src_nat.tissue ?
_entity_src_nat.tissue_fraction ?
_entity_src_nat.pdbx_secretion ?
_entity_src_nat.pdbx_fragment ?
_entity_src_nat.pdbx_variant ?
_entity_src_nat.pdbx_cell_line 'BABY HAMSTER KIDNEY 21'
_entity_src_nat.pdbx_atcc ?
_entity_src_nat.pdbx_cellular_location EXTRACELLULAR
_entity_src_nat.pdbx_organ ?
_entity_src_nat.pdbx_organelle ?
_entity_src_nat.pdbx_cell ?
_entity_src_nat.pdbx_plasmid_name ?
_entity_src_nat.pdbx_plasmid_details ?
_entity_src_nat.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 CYS 1 119 119 CYS CYS A . n
A 1 2 ILE 2 120 120 ILE ILE A . n
A 1 3 PHE 3 121 121 PHE PHE A . n
A 1 4 GLU 4 122 122 GLU GLU A . n
A 1 5 VAL 5 123 123 VAL VAL A . n
A 1 6 LYS 6 124 124 LYS LYS A . n
A 1 7 HIS 7 125 125 HIS HIS A . n
A 1 8 GLU 8 126 126 GLU GLU A . n
A 1 9 GLY 9 127 127 GLY GLY A . n
A 1 10 LYS 10 128 128 LYS LYS A . n
A 1 11 VAL 11 129 129 VAL VAL A . n
A 1 12 THR 12 130 130 THR THR A . n
A 1 13 GLY 13 131 131 GLY GLY A . n
A 1 14 TYR 14 132 132 TYR TYR A . n
A 1 15 ALA 15 133 133 ALA ALA A . n
A 1 16 CYS 16 134 134 CYS CYS A . n
A 1 17 LEU 17 135 135 LEU LEU A . n
A 1 18 VAL 18 136 136 VAL VAL A . n
A 1 19 GLY 19 137 137 GLY GLY A . n
A 1 20 ASP 20 138 138 ASP ASP A . n
A 1 21 LYS 21 139 139 LYS LYS A . n
A 1 22 VAL 22 140 140 VAL VAL A . n
A 1 23 MET 23 141 141 MET MET A . n
A 1 24 LYS 24 142 142 LYS LYS A . n
A 1 25 PRO 25 143 143 PRO PRO A . n
A 1 26 ALA 26 144 144 ALA ALA A . n
A 1 27 HIS 27 145 145 HIS HIS A . n
A 1 28 VAL 28 146 146 VAL VAL A . n
A 1 29 LYS 29 147 147 LYS LYS A . n
A 1 30 GLY 30 148 148 GLY GLY A . n
A 1 31 VAL 31 149 149 VAL VAL A . n
A 1 32 ILE 32 150 150 ILE ILE A . n
A 1 33 ASP 33 151 151 ASP ASP A . n
A 1 34 ASN 34 152 152 ASN ASN A . n
A 1 35 ALA 35 153 153 ALA ALA A . n
A 1 36 ASP 36 154 154 ASP ASP A . n
A 1 37 LEU 37 155 155 LEU LEU A . n
A 1 38 ALA 38 156 156 ALA ALA A . n
A 1 39 LYS 39 157 157 LYS LYS A . n
A 1 40 LEU 40 158 158 LEU LEU A . n
A 1 41 ALA 41 159 159 ALA ALA A . n
A 1 42 PHE 42 160 160 PHE PHE A . n
A 1 43 LYS 43 161 161 LYS LYS A . n
A 1 44 LYS 44 162 162 LYS LYS A . n
A 1 45 SER 45 163 163 SER SER A . n
A 1 46 SER 46 164 164 SER SER A . n
A 1 47 LYS 47 165 165 LYS LYS A . n
A 1 48 TYR 48 166 166 TYR TYR A . n
A 1 49 ASP 49 167 167 ASP ASP A . n
A 1 50 LEU 50 168 168 LEU LEU A . n
A 1 51 GLU 51 169 169 GLU GLU A . n
A 1 52 CYS 52 170 170 CYS CYS A . n
A 1 53 ALA 53 171 171 ALA ALA A . n
A 1 54 GLN 54 172 172 GLN GLN A . n
A 1 55 ILE 55 173 173 ILE ILE A . n
A 1 56 PRO 56 174 174 PRO PRO A . n
A 1 57 VAL 57 175 175 VAL VAL A . n
A 1 58 HIS 58 176 176 HIS HIS A . n
A 1 59 MET 59 177 177 MET MET A . n
A 1 60 ARG 60 178 178 ARG ARG A . n
A 1 61 SER 61 179 179 SER SER A . n
A 1 62 ASP 62 180 180 ASP ASP A . n
A 1 63 ALA 63 181 181 ALA ALA A . n
A 1 64 SER 64 182 182 SER SER A . n
A 1 65 LYS 65 183 183 LYS LYS A . n
A 1 66 TYR 66 184 184 TYR TYR A . n
A 1 67 THR 67 185 185 THR THR A . n
A 1 68 HIS 68 186 186 HIS HIS A . n
A 1 69 GLU 69 187 187 GLU GLU A . n
A 1 70 LYS 70 188 188 LYS LYS A . n
A 1 71 PRO 71 189 189 PRO PRO A . n
A 1 72 GLU 72 190 190 GLU GLU A . n
A 1 73 GLY 73 191 191 GLY GLY A . n
A 1 74 HIS 74 192 192 HIS HIS A . n
A 1 75 TYR 75 193 193 TYR TYR A . n
A 1 76 ASN 76 194 194 ASN ASN A . n
A 1 77 TRP 77 195 195 TRP TRP A . n
A 1 78 HIS 78 196 196 HIS HIS A . n
A 1 79 HIS 79 197 197 HIS HIS A . n
A 1 80 GLY 80 198 198 GLY GLY A . n
A 1 81 ALA 81 199 199 ALA ALA A . n
A 1 82 VAL 82 200 200 VAL VAL A . n
A 1 83 GLN 83 201 201 GLN GLN A . n
A 1 84 TYR 84 202 202 TYR TYR A . n
A 1 85 SER 85 203 203 SER SER A . n
A 1 86 GLY 86 204 204 GLY GLY A . n
A 1 87 GLY 87 205 205 GLY GLY A . n
A 1 88 ARG 88 206 206 ARG ARG A . n
A 1 89 PHE 89 207 207 PHE PHE A . n
A 1 90 THR 90 208 208 THR THR A . n
A 1 91 ILE 91 209 209 ILE ILE A . n
A 1 92 PRO 92 210 210 PRO PRO A . n
A 1 93 THR 93 211 211 THR THR A . n
A 1 94 GLY 94 212 212 GLY GLY A . n
A 1 95 ALA 95 213 213 ALA ALA A . n
A 1 96 GLY 96 214 214 GLY GLY A . n
A 1 97 LYS 97 215 215 LYS LYS A . n
A 1 98 PRO 98 216 216 PRO PRO A . n
A 1 99 GLY 99 217 217 GLY GLY A . n
A 1 100 ASP 100 218 218 ASP ASP A . n
A 1 101 SER 101 219 219 SER SER A . n
A 1 102 GLY 102 220 220 GLY GLY A . n
A 1 103 ARG 103 221 221 ARG ARG A . n
A 1 104 PRO 104 222 222 PRO PRO A . n
A 1 105 ILE 105 223 223 ILE ILE A . n
A 1 106 PHE 106 224 224 PHE PHE A . n
A 1 107 ASP 107 225 225 ASP ASP A . n
A 1 108 ASN 108 226 226 ASN ASN A . n
A 1 109 LYS 109 227 227 LYS LYS A . n
A 1 110 GLY 110 228 228 GLY GLY A . n
A 1 111 ARG 111 229 229 ARG ARG A . n
A 1 112 VAL 112 230 230 VAL VAL A . n
A 1 113 VAL 113 231 231 VAL VAL A . n
A 1 114 ALA 114 232 232 ALA ALA A . n
A 1 115 ILE 115 233 233 ILE ILE A . n
A 1 116 VAL 116 234 234 VAL VAL A . n
A 1 117 LEU 117 235 235 LEU LEU A . n
A 1 118 GLY 118 236 236 GLY GLY A . n
A 1 119 GLY 119 237 237 GLY GLY A . n
A 1 120 ALA 120 238 238 ALA ALA A . n
A 1 121 ASN 121 239 239 ASN ASN A . n
A 1 122 GLU 122 240 240 GLU GLU A . n
A 1 123 GLY 123 241 241 GLY GLY A . n
A 1 124 SER 124 242 242 SER SER A . n
A 1 125 ARG 125 243 243 ARG ARG A . n
A 1 126 THR 126 244 244 THR THR A . n
A 1 127 ALA 127 245 245 ALA ALA A . n
A 1 128 LEU 128 246 246 LEU LEU A . n
A 1 129 SER 129 247 247 SER SER A . n
A 1 130 VAL 130 248 248 VAL VAL A . n
A 1 131 VAL 131 249 249 VAL VAL A . n
A 1 132 THR 132 250 250 THR THR A . n
A 1 133 TRP 133 251 251 TRP TRP A . n
A 1 134 ASN 134 252 252 ASN ASN A . n
A 1 135 LYS 135 253 253 LYS LYS A . n
A 1 136 ASP 136 254 254 ASP ASP A . n
A 1 137 MET 137 255 255 MET MET A . n
A 1 138 VAL 138 256 256 VAL VAL A . n
A 1 139 THR 139 257 257 THR THR A . n
A 1 140 ARG 140 258 258 ARG ARG A . n
A 1 141 VAL 141 259 259 VAL VAL A . n
A 1 142 THR 142 260 260 THR THR A . n
A 1 143 PRO 143 261 261 PRO PRO A . n
A 1 144 GLU 144 262 262 GLU GLU A . n
A 1 145 GLY 145 263 263 GLY GLY A . n
A 1 146 SER 146 264 264 SER SER A . n
A 1 147 GLU 147 265 265 GLU GLU A . n
A 1 148 GLU 148 266 266 GLU GLU A . n
A 1 149 TRP 149 267 267 TRP TRP A . n
B 1 1 CYS 1 119 119 CYS CYS B . n
B 1 2 ILE 2 120 120 ILE ILE B . n
B 1 3 PHE 3 121 121 PHE PHE B . n
B 1 4 GLU 4 122 122 GLU GLU B . n
B 1 5 VAL 5 123 123 VAL VAL B . n
B 1 6 LYS 6 124 124 LYS LYS B . n
B 1 7 HIS 7 125 125 HIS HIS B . n
B 1 8 GLU 8 126 126 GLU GLU B . n
B 1 9 GLY 9 127 127 GLY GLY B . n
B 1 10 LYS 10 128 128 LYS LYS B . n
B 1 11 VAL 11 129 129 VAL VAL B . n
B 1 12 THR 12 130 130 THR THR B . n
B 1 13 GLY 13 131 131 GLY GLY B . n
B 1 14 TYR 14 132 132 TYR TYR B . n
B 1 15 ALA 15 133 133 ALA ALA B . n
B 1 16 CYS 16 134 134 CYS CYS B . n
B 1 17 LEU 17 135 135 LEU LEU B . n
B 1 18 VAL 18 136 136 VAL VAL B . n
B 1 19 GLY 19 137 137 GLY GLY B . n
B 1 20 ASP 20 138 138 ASP ASP B . n
B 1 21 LYS 21 139 139 LYS LYS B . n
B 1 22 VAL 22 140 140 VAL VAL B . n
B 1 23 MET 23 141 141 MET MET B . n
B 1 24 LYS 24 142 142 LYS LYS B . n
B 1 25 PRO 25 143 143 PRO PRO B . n
B 1 26 ALA 26 144 144 ALA ALA B . n
B 1 27 HIS 27 145 145 HIS HIS B . n
B 1 28 VAL 28 146 146 VAL VAL B . n
B 1 29 LYS 29 147 147 LYS LYS B . n
B 1 30 GLY 30 148 148 GLY GLY B . n
B 1 31 VAL 31 149 149 VAL VAL B . n
B 1 32 ILE 32 150 150 ILE ILE B . n
B 1 33 ASP 33 151 151 ASP ASP B . n
B 1 34 ASN 34 152 152 ASN ASN B . n
B 1 35 ALA 35 153 153 ALA ALA B . n
B 1 36 ASP 36 154 154 ASP ASP B . n
B 1 37 LEU 37 155 155 LEU LEU B . n
B 1 38 ALA 38 156 156 ALA ALA B . n
B 1 39 LYS 39 157 157 LYS LYS B . n
B 1 40 LEU 40 158 158 LEU LEU B . n
B 1 41 ALA 41 159 159 ALA ALA B . n
B 1 42 PHE 42 160 160 PHE PHE B . n
B 1 43 LYS 43 161 161 LYS LYS B . n
B 1 44 LYS 44 162 162 LYS LYS B . n
B 1 45 SER 45 163 163 SER SER B . n
B 1 46 SER 46 164 164 SER SER B . n
B 1 47 LYS 47 165 165 LYS LYS B . n
B 1 48 TYR 48 166 166 TYR TYR B . n
B 1 49 ASP 49 167 167 ASP ASP B . n
B 1 50 LEU 50 168 168 LEU LEU B . n
B 1 51 GLU 51 169 169 GLU GLU B . n
B 1 52 CYS 52 170 170 CYS CYS B . n
B 1 53 ALA 53 171 171 ALA ALA B . n
B 1 54 GLN 54 172 172 GLN GLN B . n
B 1 55 ILE 55 173 173 ILE ILE B . n
B 1 56 PRO 56 174 174 PRO PRO B . n
B 1 57 VAL 57 175 175 VAL VAL B . n
B 1 58 HIS 58 176 176 HIS HIS B . n
B 1 59 MET 59 177 177 MET MET B . n
B 1 60 ARG 60 178 178 ARG ARG B . n
B 1 61 SER 61 179 179 SER SER B . n
B 1 62 ASP 62 180 180 ASP ASP B . n
B 1 63 ALA 63 181 181 ALA ALA B . n
B 1 64 SER 64 182 182 SER SER B . n
B 1 65 LYS 65 183 183 LYS LYS B . n
B 1 66 TYR 66 184 184 TYR TYR B . n
B 1 67 THR 67 185 185 THR THR B . n
B 1 68 HIS 68 186 186 HIS HIS B . n
B 1 69 GLU 69 187 187 GLU GLU B . n
B 1 70 LYS 70 188 188 LYS LYS B . n
B 1 71 PRO 71 189 189 PRO PRO B . n
B 1 72 GLU 72 190 190 GLU GLU B . n
B 1 73 GLY 73 191 191 GLY GLY B . n
B 1 74 HIS 74 192 192 HIS HIS B . n
B 1 75 TYR 75 193 193 TYR TYR B . n
B 1 76 ASN 76 194 194 ASN ASN B . n
B 1 77 TRP 77 195 195 TRP TRP B . n
B 1 78 HIS 78 196 196 HIS HIS B . n
B 1 79 HIS 79 197 197 HIS HIS B . n
B 1 80 GLY 80 198 198 GLY GLY B . n
B 1 81 ALA 81 199 199 ALA ALA B . n
B 1 82 VAL 82 200 200 VAL VAL B . n
B 1 83 GLN 83 201 201 GLN GLN B . n
B 1 84 TYR 84 202 202 TYR TYR B . n
B 1 85 SER 85 203 203 SER SER B . n
B 1 86 GLY 86 204 204 GLY GLY B . n
B 1 87 GLY 87 205 205 GLY GLY B . n
B 1 88 ARG 88 206 206 ARG ARG B . n
B 1 89 PHE 89 207 207 PHE PHE B . n
B 1 90 THR 90 208 208 THR THR B . n
B 1 91 ILE 91 209 209 ILE ILE B . n
B 1 92 PRO 92 210 210 PRO PRO B . n
B 1 93 THR 93 211 211 THR THR B . n
B 1 94 GLY 94 212 212 GLY GLY B . n
B 1 95 ALA 95 213 213 ALA ALA B . n
B 1 96 GLY 96 214 214 GLY GLY B . n
B 1 97 LYS 97 215 215 LYS LYS B . n
B 1 98 PRO 98 216 216 PRO PRO B . n
B 1 99 GLY 99 217 217 GLY GLY B . n
B 1 100 ASP 100 218 218 ASP ASP B . n
B 1 101 SER 101 219 219 SER SER B . n
B 1 102 GLY 102 220 220 GLY GLY B . n
B 1 103 ARG 103 221 221 ARG ARG B . n
B 1 104 PRO 104 222 222 PRO PRO B . n
B 1 105 ILE 105 223 223 ILE ILE B . n
B 1 106 PHE 106 224 224 PHE PHE B . n
B 1 107 ASP 107 225 225 ASP ASP B . n
B 1 108 ASN 108 226 226 ASN ASN B . n
B 1 109 LYS 109 227 227 LYS LYS B . n
B 1 110 GLY 110 228 228 GLY GLY B . n
B 1 111 ARG 111 229 229 ARG ARG B . n
B 1 112 VAL 112 230 230 VAL VAL B . n
B 1 113 VAL 113 231 231 VAL VAL B . n
B 1 114 ALA 114 232 232 ALA ALA B . n
B 1 115 ILE 115 233 233 ILE ILE B . n
B 1 116 VAL 116 234 234 VAL VAL B . n
B 1 117 LEU 117 235 235 LEU LEU B . n
B 1 118 GLY 118 236 236 GLY GLY B . n
B 1 119 GLY 119 237 237 GLY GLY B . n
B 1 120 ALA 120 238 238 ALA ALA B . n
B 1 121 ASN 121 239 239 ASN ASN B . n
B 1 122 GLU 122 240 240 GLU GLU B . n
B 1 123 GLY 123 241 241 GLY GLY B . n
B 1 124 SER 124 242 242 SER SER B . n
B 1 125 ARG 125 243 243 ARG ARG B . n
B 1 126 THR 126 244 244 THR THR B . n
B 1 127 ALA 127 245 245 ALA ALA B . n
B 1 128 LEU 128 246 246 LEU LEU B . n
B 1 129 SER 129 247 247 SER SER B . n
B 1 130 VAL 130 248 248 VAL VAL B . n
B 1 131 VAL 131 249 249 VAL VAL B . n
B 1 132 THR 132 250 250 THR THR B . n
B 1 133 TRP 133 251 251 TRP TRP B . n
B 1 134 ASN 134 252 252 ASN ASN B . n
B 1 135 LYS 135 253 253 LYS LYS B . n
B 1 136 ASP 136 254 254 ASP ASP B . n
B 1 137 MET 137 255 255 MET MET B . n
B 1 138 VAL 138 256 256 VAL VAL B . n
B 1 139 THR 139 257 257 THR THR B . n
B 1 140 ARG 140 258 258 ARG ARG B . n
B 1 141 VAL 141 259 259 VAL VAL B . n
B 1 142 THR 142 260 260 THR THR B . n
B 1 143 PRO 143 261 261 PRO PRO B . n
B 1 144 GLU 144 262 262 GLU GLU B . n
B 1 145 GLY 145 263 263 GLY GLY B . n
B 1 146 SER 146 264 264 SER SER B . n
B 1 147 GLU 147 265 265 GLU GLU B . n
B 1 148 GLU 148 266 266 GLU GLU B . n
B 1 149 TRP 149 267 267 TRP TRP B . n
C 1 1 CYS 1 119 119 CYS CYS C . n
C 1 2 ILE 2 120 120 ILE ILE C . n
C 1 3 PHE 3 121 121 PHE PHE C . n
C 1 4 GLU 4 122 122 GLU GLU C . n
C 1 5 VAL 5 123 123 VAL VAL C . n
C 1 6 LYS 6 124 124 LYS LYS C . n
C 1 7 HIS 7 125 125 HIS HIS C . n
C 1 8 GLU 8 126 126 GLU GLU C . n
C 1 9 GLY 9 127 127 GLY GLY C . n
C 1 10 LYS 10 128 128 LYS LYS C . n
C 1 11 VAL 11 129 129 VAL VAL C . n
C 1 12 THR 12 130 130 THR THR C . n
C 1 13 GLY 13 131 131 GLY GLY C . n
C 1 14 TYR 14 132 132 TYR TYR C . n
C 1 15 ALA 15 133 133 ALA ALA C . n
C 1 16 CYS 16 134 134 CYS CYS C . n
C 1 17 LEU 17 135 135 LEU LEU C . n
C 1 18 VAL 18 136 136 VAL VAL C . n
C 1 19 GLY 19 137 137 GLY GLY C . n
C 1 20 ASP 20 138 138 ASP ASP C . n
C 1 21 LYS 21 139 139 LYS LYS C . n
C 1 22 VAL 22 140 140 VAL VAL C . n
C 1 23 MET 23 141 141 MET MET C . n
C 1 24 LYS 24 142 142 LYS LYS C . n
C 1 25 PRO 25 143 143 PRO PRO C . n
C 1 26 ALA 26 144 144 ALA ALA C . n
C 1 27 HIS 27 145 145 HIS HIS C . n
C 1 28 VAL 28 146 146 VAL VAL C . n
C 1 29 LYS 29 147 147 LYS LYS C . n
C 1 30 GLY 30 148 148 GLY GLY C . n
C 1 31 VAL 31 149 149 VAL VAL C . n
C 1 32 ILE 32 150 150 ILE ILE C . n
C 1 33 ASP 33 151 151 ASP ASP C . n
C 1 34 ASN 34 152 152 ASN ASN C . n
C 1 35 ALA 35 153 153 ALA ALA C . n
C 1 36 ASP 36 154 154 ASP ASP C . n
C 1 37 LEU 37 155 155 LEU LEU C . n
C 1 38 ALA 38 156 156 ALA ALA C . n
C 1 39 LYS 39 157 157 LYS LYS C . n
C 1 40 LEU 40 158 158 LEU LEU C . n
C 1 41 ALA 41 159 159 ALA ALA C . n
C 1 42 PHE 42 160 160 PHE PHE C . n
C 1 43 LYS 43 161 161 LYS LYS C . n
C 1 44 LYS 44 162 162 LYS LYS C . n
C 1 45 SER 45 163 163 SER SER C . n
C 1 46 SER 46 164 164 SER SER C . n
C 1 47 LYS 47 165 165 LYS LYS C . n
C 1 48 TYR 48 166 166 TYR TYR C . n
C 1 49 ASP 49 167 167 ASP ASP C . n
C 1 50 LEU 50 168 168 LEU LEU C . n
C 1 51 GLU 51 169 169 GLU GLU C . n
C 1 52 CYS 52 170 170 CYS CYS C . n
C 1 53 ALA 53 171 171 ALA ALA C . n
C 1 54 GLN 54 172 172 GLN GLN C . n
C 1 55 ILE 55 173 173 ILE ILE C . n
C 1 56 PRO 56 174 174 PRO PRO C . n
C 1 57 VAL 57 175 175 VAL VAL C . n
C 1 58 HIS 58 176 176 HIS HIS C . n
C 1 59 MET 59 177 177 MET MET C . n
C 1 60 ARG 60 178 178 ARG ARG C . n
C 1 61 SER 61 179 179 SER SER C . n
C 1 62 ASP 62 180 180 ASP ASP C . n
C 1 63 ALA 63 181 181 ALA ALA C . n
C 1 64 SER 64 182 182 SER SER C . n
C 1 65 LYS 65 183 183 LYS LYS C . n
C 1 66 TYR 66 184 184 TYR TYR C . n
C 1 67 THR 67 185 185 THR THR C . n
C 1 68 HIS 68 186 186 HIS HIS C . n
C 1 69 GLU 69 187 187 GLU GLU C . n
C 1 70 LYS 70 188 188 LYS LYS C . n
C 1 71 PRO 71 189 189 PRO PRO C . n
C 1 72 GLU 72 190 190 GLU GLU C . n
C 1 73 GLY 73 191 191 GLY GLY C . n
C 1 74 HIS 74 192 192 HIS HIS C . n
C 1 75 TYR 75 193 193 TYR TYR C . n
C 1 76 ASN 76 194 194 ASN ASN C . n
C 1 77 TRP 77 195 195 TRP TRP C . n
C 1 78 HIS 78 196 196 HIS HIS C . n
C 1 79 HIS 79 197 197 HIS HIS C . n
C 1 80 GLY 80 198 198 GLY GLY C . n
C 1 81 ALA 81 199 199 ALA ALA C . n
C 1 82 VAL 82 200 200 VAL VAL C . n
C 1 83 GLN 83 201 201 GLN GLN C . n
C 1 84 TYR 84 202 202 TYR TYR C . n
C 1 85 SER 85 203 203 SER SER C . n
C 1 86 GLY 86 204 204 GLY GLY C . n
C 1 87 GLY 87 205 205 GLY GLY C . n
C 1 88 ARG 88 206 206 ARG ARG C . n
C 1 89 PHE 89 207 207 PHE PHE C . n
C 1 90 THR 90 208 208 THR THR C . n
C 1 91 ILE 91 209 209 ILE ILE C . n
C 1 92 PRO 92 210 210 PRO PRO C . n
C 1 93 THR 93 211 211 THR THR C . n
C 1 94 GLY 94 212 212 GLY GLY C . n
C 1 95 ALA 95 213 213 ALA ALA C . n
C 1 96 GLY 96 214 214 GLY GLY C . n
C 1 97 LYS 97 215 215 LYS LYS C . n
C 1 98 PRO 98 216 216 PRO PRO C . n
C 1 99 GLY 99 217 217 GLY GLY C . n
C 1 100 ASP 100 218 218 ASP ASP C . n
C 1 101 SER 101 219 219 SER SER C . n
C 1 102 GLY 102 220 220 GLY GLY C . n
C 1 103 ARG 103 221 221 ARG ARG C . n
C 1 104 PRO 104 222 222 PRO PRO C . n
C 1 105 ILE 105 223 223 ILE ILE C . n
C 1 106 PHE 106 224 224 PHE PHE C . n
C 1 107 ASP 107 225 225 ASP ASP C . n
C 1 108 ASN 108 226 226 ASN ASN C . n
C 1 109 LYS 109 227 227 LYS LYS C . n
C 1 110 GLY 110 228 228 GLY GLY C . n
C 1 111 ARG 111 229 229 ARG ARG C . n
C 1 112 VAL 112 230 230 VAL VAL C . n
C 1 113 VAL 113 231 231 VAL VAL C . n
C 1 114 ALA 114 232 232 ALA ALA C . n
C 1 115 ILE 115 233 233 ILE ILE C . n
C 1 116 VAL 116 234 234 VAL VAL C . n
C 1 117 LEU 117 235 235 LEU LEU C . n
C 1 118 GLY 118 236 236 GLY GLY C . n
C 1 119 GLY 119 237 237 GLY GLY C . n
C 1 120 ALA 120 238 238 ALA ALA C . n
C 1 121 ASN 121 239 239 ASN ASN C . n
C 1 122 GLU 122 240 240 GLU GLU C . n
C 1 123 GLY 123 241 241 GLY GLY C . n
C 1 124 SER 124 242 242 SER SER C . n
C 1 125 ARG 125 243 243 ARG ARG C . n
C 1 126 THR 126 244 244 THR THR C . n
C 1 127 ALA 127 245 245 ALA ALA C . n
C 1 128 LEU 128 246 246 LEU LEU C . n
C 1 129 SER 129 247 247 SER SER C . n
C 1 130 VAL 130 248 248 VAL VAL C . n
C 1 131 VAL 131 249 249 VAL VAL C . n
C 1 132 THR 132 250 250 THR THR C . n
C 1 133 TRP 133 251 251 TRP TRP C . n
C 1 134 ASN 134 252 252 ASN ASN C . n
C 1 135 LYS 135 253 253 LYS LYS C . n
C 1 136 ASP 136 254 254 ASP ASP C . n
C 1 137 MET 137 255 255 MET MET C . n
C 1 138 VAL 138 256 256 VAL VAL C . n
C 1 139 THR 139 257 257 THR THR C . n
C 1 140 ARG 140 258 258 ARG ARG C . n
C 1 141 VAL 141 259 259 VAL VAL C . n
C 1 142 THR 142 260 260 THR THR C . n
C 1 143 PRO 143 261 261 PRO PRO C . n
C 1 144 GLU 144 262 262 GLU GLU C . n
C 1 145 GLY 145 263 263 GLY GLY C . n
C 1 146 SER 146 264 264 SER SER C . n
C 1 147 GLU 147 265 265 GLU GLU C . n
C 1 148 GLU 148 266 266 GLU GLU C . n
C 1 149 TRP 149 267 267 TRP TRP C . n
D 1 1 CYS 1 119 119 CYS CYS D . n
D 1 2 ILE 2 120 120 ILE ILE D . n
D 1 3 PHE 3 121 121 PHE PHE D . n
D 1 4 GLU 4 122 122 GLU GLU D . n
D 1 5 VAL 5 123 123 VAL VAL D . n
D 1 6 LYS 6 124 124 LYS LYS D . n
D 1 7 HIS 7 125 125 HIS HIS D . n
D 1 8 GLU 8 126 126 GLU GLU D . n
D 1 9 GLY 9 127 127 GLY GLY D . n
D 1 10 LYS 10 128 128 LYS LYS D . n
D 1 11 VAL 11 129 129 VAL VAL D . n
D 1 12 THR 12 130 130 THR THR D . n
D 1 13 GLY 13 131 131 GLY GLY D . n
D 1 14 TYR 14 132 132 TYR TYR D . n
D 1 15 ALA 15 133 133 ALA ALA D . n
D 1 16 CYS 16 134 134 CYS CYS D . n
D 1 17 LEU 17 135 135 LEU LEU D . n
D 1 18 VAL 18 136 136 VAL VAL D . n
D 1 19 GLY 19 137 137 GLY GLY D . n
D 1 20 ASP 20 138 138 ASP ASP D . n
D 1 21 LYS 21 139 139 LYS LYS D . n
D 1 22 VAL 22 140 140 VAL VAL D . n
D 1 23 MET 23 141 141 MET MET D . n
D 1 24 LYS 24 142 142 LYS LYS D . n
D 1 25 PRO 25 143 143 PRO PRO D . n
D 1 26 ALA 26 144 144 ALA ALA D . n
D 1 27 HIS 27 145 145 HIS HIS D . n
D 1 28 VAL 28 146 146 VAL VAL D . n
D 1 29 LYS 29 147 147 LYS LYS D . n
D 1 30 GLY 30 148 148 GLY GLY D . n
D 1 31 VAL 31 149 149 VAL VAL D . n
D 1 32 ILE 32 150 150 ILE ILE D . n
D 1 33 ASP 33 151 151 ASP ASP D . n
D 1 34 ASN 34 152 152 ASN ASN D . n
D 1 35 ALA 35 153 153 ALA ALA D . n
D 1 36 ASP 36 154 154 ASP ASP D . n
D 1 37 LEU 37 155 155 LEU LEU D . n
D 1 38 ALA 38 156 156 ALA ALA D . n
D 1 39 LYS 39 157 157 LYS LYS D . n
D 1 40 LEU 40 158 158 LEU LEU D . n
D 1 41 ALA 41 159 159 ALA ALA D . n
D 1 42 PHE 42 160 160 PHE PHE D . n
D 1 43 LYS 43 161 161 LYS LYS D . n
D 1 44 LYS 44 162 162 LYS LYS D . n
D 1 45 SER 45 163 163 SER SER D . n
D 1 46 SER 46 164 164 SER SER D . n
D 1 47 LYS 47 165 165 LYS LYS D . n
D 1 48 TYR 48 166 166 TYR TYR D . n
D 1 49 ASP 49 167 167 ASP ASP D . n
D 1 50 LEU 50 168 168 LEU LEU D . n
D 1 51 GLU 51 169 169 GLU GLU D . n
D 1 52 CYS 52 170 170 CYS CYS D . n
D 1 53 ALA 53 171 171 ALA ALA D . n
D 1 54 GLN 54 172 172 GLN GLN D . n
D 1 55 ILE 55 173 173 ILE ILE D . n
D 1 56 PRO 56 174 174 PRO PRO D . n
D 1 57 VAL 57 175 175 VAL VAL D . n
D 1 58 HIS 58 176 176 HIS HIS D . n
D 1 59 MET 59 177 177 MET MET D . n
D 1 60 ARG 60 178 178 ARG ARG D . n
D 1 61 SER 61 179 179 SER SER D . n
D 1 62 ASP 62 180 180 ASP ASP D . n
D 1 63 ALA 63 181 181 ALA ALA D . n
D 1 64 SER 64 182 182 SER SER D . n
D 1 65 LYS 65 183 183 LYS LYS D . n
D 1 66 TYR 66 184 184 TYR TYR D . n
D 1 67 THR 67 185 185 THR THR D . n
D 1 68 HIS 68 186 186 HIS HIS D . n
D 1 69 GLU 69 187 187 GLU GLU D . n
D 1 70 LYS 70 188 188 LYS LYS D . n
D 1 71 PRO 71 189 189 PRO PRO D . n
D 1 72 GLU 72 190 190 GLU GLU D . n
D 1 73 GLY 73 191 191 GLY GLY D . n
D 1 74 HIS 74 192 192 HIS HIS D . n
D 1 75 TYR 75 193 193 TYR TYR D . n
D 1 76 ASN 76 194 194 ASN ASN D . n
D 1 77 TRP 77 195 195 TRP TRP D . n
D 1 78 HIS 78 196 196 HIS HIS D . n
D 1 79 HIS 79 197 197 HIS HIS D . n
D 1 80 GLY 80 198 198 GLY GLY D . n
D 1 81 ALA 81 199 199 ALA ALA D . n
D 1 82 VAL 82 200 200 VAL VAL D . n
D 1 83 GLN 83 201 201 GLN GLN D . n
D 1 84 TYR 84 202 202 TYR TYR D . n
D 1 85 SER 85 203 203 SER SER D . n
D 1 86 GLY 86 204 204 GLY GLY D . n
D 1 87 GLY 87 205 205 GLY GLY D . n
D 1 88 ARG 88 206 206 ARG ARG D . n
D 1 89 PHE 89 207 207 PHE PHE D . n
D 1 90 THR 90 208 208 THR THR D . n
D 1 91 ILE 91 209 209 ILE ILE D . n
D 1 92 PRO 92 210 210 PRO PRO D . n
D 1 93 THR 93 211 211 THR THR D . n
D 1 94 GLY 94 212 212 GLY GLY D . n
D 1 95 ALA 95 213 213 ALA ALA D . n
D 1 96 GLY 96 214 214 GLY GLY D . n
D 1 97 LYS 97 215 215 LYS LYS D . n
D 1 98 PRO 98 216 216 PRO PRO D . n
D 1 99 GLY 99 217 217 GLY GLY D . n
D 1 100 ASP 100 218 218 ASP ASP D . n
D 1 101 SER 101 219 219 SER SER D . n
D 1 102 GLY 102 220 220 GLY GLY D . n
D 1 103 ARG 103 221 221 ARG ARG D . n
D 1 104 PRO 104 222 222 PRO PRO D . n
D 1 105 ILE 105 223 223 ILE ILE D . n
D 1 106 PHE 106 224 224 PHE PHE D . n
D 1 107 ASP 107 225 225 ASP ASP D . n
D 1 108 ASN 108 226 226 ASN ASN D . n
D 1 109 LYS 109 227 227 LYS LYS D . n
D 1 110 GLY 110 228 228 GLY GLY D . n
D 1 111 ARG 111 229 229 ARG ARG D . n
D 1 112 VAL 112 230 230 VAL VAL D . n
D 1 113 VAL 113 231 231 VAL VAL D . n
D 1 114 ALA 114 232 232 ALA ALA D . n
D 1 115 ILE 115 233 233 ILE ILE D . n
D 1 116 VAL 116 234 234 VAL VAL D . n
D 1 117 LEU 117 235 235 LEU LEU D . n
D 1 118 GLY 118 236 236 GLY GLY D . n
D 1 119 GLY 119 237 237 GLY GLY D . n
D 1 120 ALA 120 238 238 ALA ALA D . n
D 1 121 ASN 121 239 239 ASN ASN D . n
D 1 122 GLU 122 240 240 GLU GLU D . n
D 1 123 GLY 123 241 241 GLY GLY D . n
D 1 124 SER 124 242 242 SER SER D . n
D 1 125 ARG 125 243 243 ARG ARG D . n
D 1 126 THR 126 244 244 THR THR D . n
D 1 127 ALA 127 245 245 ALA ALA D . n
D 1 128 LEU 128 246 246 LEU LEU D . n
D 1 129 SER 129 247 247 SER SER D . n
D 1 130 VAL 130 248 248 VAL VAL D . n
D 1 131 VAL 131 249 249 VAL VAL D . n
D 1 132 THR 132 250 250 THR THR D . n
D 1 133 TRP 133 251 251 TRP TRP D . n
D 1 134 ASN 134 252 252 ASN ASN D . n
D 1 135 LYS 135 253 253 LYS LYS D . n
D 1 136 ASP 136 254 254 ASP ASP D . n
D 1 137 MET 137 255 255 MET MET D . n
D 1 138 VAL 138 256 256 VAL VAL D . n
D 1 139 THR 139 257 257 THR THR D . n
D 1 140 ARG 140 258 258 ARG ARG D . n
D 1 141 VAL 141 259 259 VAL VAL D . n
D 1 142 THR 142 260 260 THR THR D . n
D 1 143 PRO 143 261 261 PRO PRO D . n
D 1 144 GLU 144 262 262 GLU GLU D . n
D 1 145 GLY 145 263 263 GLY GLY D . n
D 1 146 SER 146 264 264 SER SER D . n
D 1 147 GLU 147 265 265 GLU GLU D . n
D 1 148 GLU 148 266 266 GLU GLU D . n
D 1 149 TRP 149 267 267 TRP TRP D . n
#
_pdbx_unobs_or_zero_occ_atoms.id 1
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1
_pdbx_unobs_or_zero_occ_atoms.polymer_flag Y
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id D
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id TRP
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id 267
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ?
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id CH2
_pdbx_unobs_or_zero_occ_atoms.label_alt_id ?
_pdbx_unobs_or_zero_occ_atoms.label_asym_id D
_pdbx_unobs_or_zero_occ_atoms.label_comp_id TRP
_pdbx_unobs_or_zero_occ_atoms.label_seq_id 149
_pdbx_unobs_or_zero_occ_atoms.label_atom_id CH2
#
_cell.entry_id 1DYL
_cell.length_a 1.000
_cell.length_b 1.000
_cell.length_c 1.000
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 1
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1DYL
_symmetry.space_group_name_H-M 'P 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 1
#
_exptl.entry_id 1DYL
_exptl.method 'ELECTRON MICROSCOPY'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews ?
_exptl_crystal.density_percent_sol ?
_exptl_crystal.description ?
#
_diffrn.id 1
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type ?
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_refine.pdbx_refine_id 'ELECTRON MICROSCOPY'
_refine.entry_id 1DYL
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs ?
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low ?
_refine.ls_d_res_high 9.00
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs ?
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 4563
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 4563
_refine_hist.d_res_high 9.00
_refine_hist.d_res_low .
#
_database_PDB_matrix.entry_id 1DYL
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1DYL
_struct.title
;9 ANGSTROM RESOLUTION CRYO-EM RECONSTRUCTION STRUCTURE OF SEMLIKI FOREST VIRUS (SFV) AND FITTING OF THE CAPSID PROTEIN STRUCTURE IN THE EM DENSITY
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1DYL
_struct_keywords.pdbx_keywords 'VIRUS/VIRAL PROTEIN'
_struct_keywords.text
;VIRUS/VIRAL PROTEIN, ALPHAVIRUS, SFV, CRYO-EM, IMAGE RECONSTRUCTION, ENVELOPED VIRUS, CAPSID PROTEIN, ICOSAHEDRAL VIRUS, VIRUS-VIRAL PROTEIN complex
;
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 1 ?
D N N 1 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code POLS_SFV
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_db_accession P03315
_struct_ref.pdbx_db_isoform ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1DYL A 1 ? 149 ? P03315 119 ? 267 ? 119 267
2 1 1DYL B 1 ? 149 ? P03315 119 ? 267 ? 119 267
3 1 1DYL C 1 ? 149 ? P03315 119 ? 267 ? 119 267
4 1 1DYL D 1 ? 149 ? P03315 119 ? 267 ? 119 267
#
loop_
_pdbx_struct_assembly.id
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
1 'complete icosahedral assembly' ? 240-MERIC 240
2 'icosahedral asymmetric unit' ? tetrameric 4
3 'icosahedral pentamer' ? eicosameric 20
4 'icosahedral 23 hexamer' ? 24-meric 24
5 'icosahedral asymmetric unit, std point frame' ? tetrameric 4
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 '(1-60)' A,B,C,D
2 1 A,B,C,D
3 '(1-5)' A,B,C,D
4 '(1,2,6,10,23,24)' A,B,C,D
5 P A,B,C,D
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
P 'transform to point frame' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 -0.00000
1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 0.00000
2 'point symmetry operation' ? ? 0.50000000 -0.80901699 0.30901699 0.00000 0.80901699 0.30901699 -0.50000000 0.00000
0.30901699 0.50000000 0.80901699 0.00000
3 'point symmetry operation' ? ? -0.30901699 -0.50000000 0.80901699 0.00000 0.50000000 -0.80901699 -0.30901699 0.00000
0.80901699 0.30901699 0.50000000 0.00000
4 'point symmetry operation' ? ? -0.30901699 0.50000000 0.80901699 0.00000 -0.50000000 -0.80901699 0.30901699 0.00000
0.80901699 -0.30901699 0.50000000 0.00000
5 'point symmetry operation' ? ? 0.50000000 0.80901699 0.30901699 0.00000 -0.80901699 0.30901699 0.50000000 0.00000
0.30901699 -0.50000000 0.80901699 0.00000
6 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000
0.00000000 0.00000000 1.00000000 0.00000
7 'point symmetry operation' ? ? -0.50000000 0.80901699 -0.30901699 0.00000 -0.80901699 -0.30901699 0.50000000 0.00000
0.30901699 0.50000000 0.80901699 0.00000
8 'point symmetry operation' ? ? 0.30901699 0.50000000 -0.80901699 0.00000 -0.50000000 0.80901699 0.30901699 0.00000
0.80901699 0.30901699 0.50000000 0.00000
9 'point symmetry operation' ? ? 0.30901699 -0.50000000 -0.80901699 0.00000 0.50000000 0.80901699 -0.30901699 0.00000
0.80901699 -0.30901699 0.50000000 0.00000
10 'point symmetry operation' ? ? -0.50000000 -0.80901699 -0.30901699 0.00000 0.80901699 -0.30901699 -0.50000000 0.00000
0.30901699 -0.50000000 0.80901699 0.00000
11 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000
0.00000000 0.00000000 -1.00000000 0.00000
12 'point symmetry operation' ? ? 0.50000000 -0.80901699 0.30901699 0.00000 -0.80901699 -0.30901699 0.50000000 0.00000
-0.30901699 -0.50000000 -0.80901699 0.00000
13 'point symmetry operation' ? ? -0.30901699 -0.50000000 0.80901699 0.00000 -0.50000000 0.80901699 0.30901699 0.00000
-0.80901699 -0.30901699 -0.50000000 0.00000
14 'point symmetry operation' ? ? -0.30901699 0.50000000 0.80901699 0.00000 0.50000000 0.80901699 -0.30901699 0.00000
-0.80901699 0.30901699 -0.50000000 0.00000
15 'point symmetry operation' ? ? 0.50000000 0.80901699 0.30901699 0.00000 0.80901699 -0.30901699 -0.50000000 0.00000
-0.30901699 0.50000000 -0.80901699 0.00000
16 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000
0.00000000 0.00000000 -1.00000000 0.00000
17 'point symmetry operation' ? ? -0.50000000 0.80901699 -0.30901699 0.00000 0.80901699 0.30901699 -0.50000000 0.00000
-0.30901699 -0.50000000 -0.80901699 0.00000
18 'point symmetry operation' ? ? 0.30901699 0.50000000 -0.80901699 0.00000 0.50000000 -0.80901699 -0.30901699 0.00000
-0.80901699 -0.30901699 -0.50000000 0.00000
19 'point symmetry operation' ? ? 0.30901699 -0.50000000 -0.80901699 0.00000 -0.50000000 -0.80901699 0.30901699 0.00000
-0.80901699 0.30901699 -0.50000000 0.00000
20 'point symmetry operation' ? ? -0.50000000 -0.80901699 -0.30901699 0.00000 -0.80901699 0.30901699 0.50000000 0.00000
-0.30901699 0.50000000 -0.80901699 0.00000
21 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000
1.00000000 0.00000000 0.00000000 0.00000
22 'point symmetry operation' ? ? -0.80901699 -0.30901699 0.50000000 0.00000 -0.30901699 -0.50000000 -0.80901699 0.00000
0.50000000 -0.80901699 0.30901699 0.00000
23 'point symmetry operation' ? ? -0.50000000 0.80901699 0.30901699 0.00000 -0.80901699 -0.30901699 -0.50000000 0.00000
-0.30901699 -0.50000000 0.80901699 0.00000
24 'point symmetry operation' ? ? 0.50000000 0.80901699 -0.30901699 0.00000 -0.80901699 0.30901699 -0.50000000 0.00000
-0.30901699 0.50000000 0.80901699 0.00000
25 'point symmetry operation' ? ? 0.80901699 -0.30901699 -0.50000000 0.00000 -0.30901699 0.50000000 -0.80901699 0.00000
0.50000000 0.80901699 0.30901699 0.00000
26 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000
-1.00000000 0.00000000 0.00000000 0.00000
27 'point symmetry operation' ? ? 0.80901699 0.30901699 -0.50000000 0.00000 -0.30901699 -0.50000000 -0.80901699 0.00000
-0.50000000 0.80901699 -0.30901699 0.00000
28 'point symmetry operation' ? ? 0.50000000 -0.80901699 -0.30901699 0.00000 -0.80901699 -0.30901699 -0.50000000 0.00000
0.30901699 0.50000000 -0.80901699 0.00000
29 'point symmetry operation' ? ? -0.50000000 -0.80901699 0.30901699 0.00000 -0.80901699 0.30901699 -0.50000000 0.00000
0.30901699 -0.50000000 -0.80901699 0.00000
30 'point symmetry operation' ? ? -0.80901699 0.30901699 0.50000000 0.00000 -0.30901699 0.50000000 -0.80901699 0.00000
-0.50000000 -0.80901699 -0.30901699 0.00000
31 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000
1.00000000 0.00000000 0.00000000 0.00000
32 'point symmetry operation' ? ? 0.80901699 0.30901699 -0.50000000 0.00000 0.30901699 0.50000000 0.80901699 0.00000
0.50000000 -0.80901699 0.30901699 0.00000
33 'point symmetry operation' ? ? 0.50000000 -0.80901699 -0.30901699 0.00000 0.80901699 0.30901699 0.50000000 0.00000
-0.30901699 -0.50000000 0.80901699 0.00000
34 'point symmetry operation' ? ? -0.50000000 -0.80901699 0.30901699 0.00000 0.80901699 -0.30901699 0.50000000 0.00000
-0.30901699 0.50000000 0.80901699 0.00000
35 'point symmetry operation' ? ? -0.80901699 0.30901699 0.50000000 0.00000 0.30901699 -0.50000000 0.80901699 0.00000
0.50000000 0.80901699 0.30901699 0.00000
36 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000
-1.00000000 0.00000000 0.00000000 0.00000
37 'point symmetry operation' ? ? -0.80901699 -0.30901699 0.50000000 0.00000 0.30901699 0.50000000 0.80901699 0.00000
-0.50000000 0.80901699 -0.30901699 0.00000
38 'point symmetry operation' ? ? -0.50000000 0.80901699 0.30901699 0.00000 0.80901699 0.30901699 0.50000000 0.00000
0.30901699 0.50000000 -0.80901699 0.00000
39 'point symmetry operation' ? ? 0.50000000 0.80901699 -0.30901699 0.00000 0.80901699 -0.30901699 0.50000000 0.00000
0.30901699 -0.50000000 -0.80901699 0.00000
40 'point symmetry operation' ? ? 0.80901699 -0.30901699 -0.50000000 0.00000 0.30901699 -0.50000000 0.80901699 0.00000
-0.50000000 -0.80901699 -0.30901699 0.00000
41 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000
0.00000000 -1.00000000 0.00000000 0.00000
42 'point symmetry operation' ? ? 0.30901699 0.50000000 0.80901699 0.00000 -0.50000000 0.80901699 -0.30901699 0.00000
-0.80901699 -0.30901699 0.50000000 0.00000
43 'point symmetry operation' ? ? 0.80901699 0.30901699 0.50000000 0.00000 0.30901699 0.50000000 -0.80901699 0.00000
-0.50000000 0.80901699 0.30901699 0.00000
44 'point symmetry operation' ? ? 0.80901699 -0.30901699 0.50000000 0.00000 0.30901699 -0.50000000 -0.80901699 0.00000
0.50000000 0.80901699 -0.30901699 0.00000
45 'point symmetry operation' ? ? 0.30901699 -0.50000000 0.80901699 0.00000 -0.50000000 -0.80901699 -0.30901699 0.00000
0.80901699 -0.30901699 -0.50000000 0.00000
46 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000
0.00000000 1.00000000 0.00000000 0.00000
47 'point symmetry operation' ? ? 0.30901699 0.50000000 0.80901699 0.00000 0.50000000 -0.80901699 0.30901699 0.00000
0.80901699 0.30901699 -0.50000000 0.00000
48 'point symmetry operation' ? ? 0.80901699 0.30901699 0.50000000 0.00000 -0.30901699 -0.50000000 0.80901699 0.00000
0.50000000 -0.80901699 -0.30901699 0.00000
49 'point symmetry operation' ? ? 0.80901699 -0.30901699 0.50000000 0.00000 -0.30901699 0.50000000 0.80901699 0.00000
-0.50000000 -0.80901699 0.30901699 0.00000
50 'point symmetry operation' ? ? 0.30901699 -0.50000000 0.80901699 0.00000 0.50000000 0.80901699 0.30901699 0.00000
-0.80901699 0.30901699 0.50000000 0.00000
51 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000
0.00000000 1.00000000 0.00000000 0.00000
52 'point symmetry operation' ? ? -0.30901699 -0.50000000 -0.80901699 0.00000 -0.50000000 0.80901699 -0.30901699 0.00000
0.80901699 0.30901699 -0.50000000 0.00000
53 'point symmetry operation' ? ? -0.80901699 -0.30901699 -0.50000000 0.00000 0.30901699 0.50000000 -0.80901699 0.00000
0.50000000 -0.80901699 -0.30901699 0.00000
54 'point symmetry operation' ? ? -0.80901699 0.30901699 -0.50000000 0.00000 0.30901699 -0.50000000 -0.80901699 0.00000
-0.50000000 -0.80901699 0.30901699 0.00000
55 'point symmetry operation' ? ? -0.30901699 0.50000000 -0.80901699 0.00000 -0.50000000 -0.80901699 -0.30901699 0.00000
-0.80901699 0.30901699 0.50000000 0.00000
56 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000
0.00000000 -1.00000000 0.00000000 0.00000
57 'point symmetry operation' ? ? -0.30901699 -0.50000000 -0.80901699 0.00000 0.50000000 -0.80901699 0.30901699 0.00000
-0.80901699 -0.30901699 0.50000000 0.00000
58 'point symmetry operation' ? ? -0.80901699 -0.30901699 -0.50000000 0.00000 -0.30901699 -0.50000000 0.80901699 0.00000
-0.50000000 0.80901699 0.30901699 0.00000
59 'point symmetry operation' ? ? -0.80901699 0.30901699 -0.50000000 0.00000 -0.30901699 0.50000000 0.80901699 0.00000
0.50000000 0.80901699 -0.30901699 0.00000
60 'point symmetry operation' ? ? -0.30901699 0.50000000 -0.80901699 0.00000 0.50000000 0.80901699 0.30901699 0.00000
0.80901699 -0.30901699 -0.50000000 0.00000
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 ASN A 34 ? LYS A 39 ? ASN A 152 LYS A 157 1 ? 6
HELX_P HELX_P2 2 PRO A 56 ? ALA A 63 ? PRO A 174 ALA A 181 5 ? 8
HELX_P HELX_P3 3 ASN B 34 ? LYS B 39 ? ASN B 152 LYS B 157 1 ? 6
HELX_P HELX_P4 4 PRO B 56 ? ALA B 63 ? PRO B 174 ALA B 181 5 ? 8
HELX_P HELX_P5 5 ASN C 34 ? LYS C 39 ? ASN C 152 LYS C 157 1 ? 6
HELX_P HELX_P6 6 PRO C 56 ? ALA C 63 ? PRO C 174 ALA C 181 5 ? 8
HELX_P HELX_P7 7 ASN D 34 ? LYS D 39 ? ASN D 152 LYS D 157 1 ? 6
HELX_P HELX_P8 8 PRO D 56 ? ALA D 63 ? PRO D 174 ALA D 181 5 ? 8
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 1 SG ? ? ? 1_555 A CYS 16 SG ? ? A CYS 119 A CYS 134 1_555 ? ? ? ? ? ? ? 1.992 ? ?
disulf2 disulf ? ? B CYS 1 SG ? ? ? 1_555 B CYS 16 SG ? ? B CYS 119 B CYS 134 1_555 ? ? ? ? ? ? ? 1.991 ? ?
disulf3 disulf ? ? C CYS 1 SG ? ? ? 1_555 C CYS 16 SG ? ? C CYS 119 C CYS 134 1_555 ? ? ? ? ? ? ? 1.991 ? ?
disulf4 disulf ? ? D CYS 1 SG ? ? ? 1_555 D CYS 16 SG ? ? D CYS 119 D CYS 134 1_555 ? ? ? ? ? ? ? 1.991 ? ?
#
_struct_conn_type.id disulf
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 CYS A 1 ? CYS A 16 ? CYS A 119 ? 1_555 CYS A 134 ? 1_555 SG SG . . . None 'Disulfide bridge'
2 CYS B 1 ? CYS B 16 ? CYS B 119 ? 1_555 CYS B 134 ? 1_555 SG SG . . . None 'Disulfide bridge'
3 CYS C 1 ? CYS C 16 ? CYS C 119 ? 1_555 CYS C 134 ? 1_555 SG SG . . . None 'Disulfide bridge'
4 CYS D 1 ? CYS D 16 ? CYS D 119 ? 1_555 CYS D 134 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
AA ? 3 ?
AB ? 4 ?
AC ? 4 ?
BA ? 3 ?
BB ? 4 ?
BC ? 4 ?
CA ? 3 ?
CB ? 4 ?
CC ? 4 ?
DA ? 3 ?
DB ? 4 ?
DC ? 4 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
AA 1 2 ? anti-parallel
AA 2 3 ? anti-parallel
AB 1 2 ? anti-parallel
AB 2 3 ? anti-parallel
AB 3 4 ? anti-parallel
AC 1 2 ? anti-parallel
AC 2 3 ? anti-parallel
AC 3 4 ? anti-parallel
BA 1 2 ? anti-parallel
BA 2 3 ? anti-parallel
BB 1 2 ? anti-parallel
BB 2 3 ? anti-parallel
BB 3 4 ? anti-parallel
BC 1 2 ? anti-parallel
BC 2 3 ? anti-parallel
BC 3 4 ? anti-parallel
CA 1 2 ? anti-parallel
CA 2 3 ? anti-parallel
CB 1 2 ? anti-parallel
CB 2 3 ? anti-parallel
CB 3 4 ? anti-parallel
CC 1 2 ? anti-parallel
CC 2 3 ? anti-parallel
CC 3 4 ? anti-parallel
DA 1 2 ? anti-parallel
DA 2 3 ? anti-parallel
DB 1 2 ? anti-parallel
DB 2 3 ? anti-parallel
DB 3 4 ? anti-parallel
DC 1 2 ? anti-parallel
DC 2 3 ? anti-parallel
DC 3 4 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
AA 1 LYS A 10 ? ALA A 15 ? LYS A 128 ALA A 133
AA 2 PHE A 3 ? HIS A 7 ? PHE A 121 HIS A 125
AA 3 VAL A 31 ? ILE A 32 ? VAL A 149 ILE A 150
AB 1 LEU A 17 ? VAL A 18 ? LEU A 135 VAL A 136
AB 2 LYS A 21 ? VAL A 22 ? LYS A 139 VAL A 140
AB 3 LEU A 50 ? GLN A 54 ? LEU A 168 GLN A 172
AB 4 LYS A 43 ? SER A 45 ? LYS A 161 SER A 163
AC 1 GLY A 73 ? TRP A 77 ? GLY A 191 TRP A 195
AC 2 GLY A 80 ? TYR A 84 ? GLY A 198 TYR A 202
AC 3 PHE A 89 ? PRO A 92 ? PHE A 207 PRO A 210
AC 4 ARG A 125 ? TRP A 133 ? ARG A 243 TRP A 251
BA 1 LYS B 10 ? ALA B 15 ? LYS B 128 ALA B 133
BA 2 PHE B 3 ? HIS B 7 ? PHE B 121 HIS B 125
BA 3 VAL B 31 ? ILE B 32 ? VAL B 149 ILE B 150
BB 1 LEU B 17 ? VAL B 18 ? LEU B 135 VAL B 136
BB 2 LYS B 21 ? VAL B 22 ? LYS B 139 VAL B 140
BB 3 LEU B 50 ? GLN B 54 ? LEU B 168 GLN B 172
BB 4 LYS B 43 ? SER B 45 ? LYS B 161 SER B 163
BC 1 GLY B 73 ? TRP B 77 ? GLY B 191 TRP B 195
BC 2 GLY B 80 ? TYR B 84 ? GLY B 198 TYR B 202
BC 3 PHE B 89 ? PRO B 92 ? PHE B 207 PRO B 210
BC 4 ARG B 125 ? TRP B 133 ? ARG B 243 TRP B 251
CA 1 LYS C 10 ? ALA C 15 ? LYS C 128 ALA C 133
CA 2 PHE C 3 ? HIS C 7 ? PHE C 121 HIS C 125
CA 3 VAL C 31 ? ILE C 32 ? VAL C 149 ILE C 150
CB 1 LEU C 17 ? VAL C 18 ? LEU C 135 VAL C 136
CB 2 LYS C 21 ? VAL C 22 ? LYS C 139 VAL C 140
CB 3 LEU C 50 ? GLN C 54 ? LEU C 168 GLN C 172
CB 4 LYS C 43 ? SER C 45 ? LYS C 161 SER C 163
CC 1 GLY C 73 ? TRP C 77 ? GLY C 191 TRP C 195
CC 2 GLY C 80 ? TYR C 84 ? GLY C 198 TYR C 202
CC 3 PHE C 89 ? PRO C 92 ? PHE C 207 PRO C 210
CC 4 ARG C 125 ? TRP C 133 ? ARG C 243 TRP C 251
DA 1 LYS D 10 ? ALA D 15 ? LYS D 128 ALA D 133
DA 2 PHE D 3 ? HIS D 7 ? PHE D 121 HIS D 125
DA 3 VAL D 31 ? ILE D 32 ? VAL D 149 ILE D 150
DB 1 LEU D 17 ? VAL D 18 ? LEU D 135 VAL D 136
DB 2 LYS D 21 ? VAL D 22 ? LYS D 139 VAL D 140
DB 3 LEU D 50 ? GLN D 54 ? LEU D 168 GLN D 172
DB 4 LYS D 43 ? SER D 45 ? LYS D 161 SER D 163
DC 1 GLY D 73 ? TRP D 77 ? GLY D 191 TRP D 195
DC 2 GLY D 80 ? TYR D 84 ? GLY D 198 TYR D 202
DC 3 PHE D 89 ? PRO D 92 ? PHE D 207 PRO D 210
DC 4 ARG D 125 ? TRP D 133 ? ARG D 243 TRP D 251
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
AA 1 2 N ALA A 15 ? N ALA A 133 O PHE A 3 ? O PHE A 121
AA 2 3 N LYS A 6 ? N LYS A 124 O VAL A 31 ? O VAL A 149
AB 1 2 N VAL A 18 ? N VAL A 136 O LYS A 21 ? O LYS A 139
AB 2 3 N VAL A 22 ? N VAL A 140 O ALA A 53 ? O ALA A 171
AB 3 4 N CYS A 52 ? N CYS A 170 O LYS A 43 ? O LYS A 161
AC 1 2 N TRP A 77 ? N TRP A 195 O GLY A 80 ? O GLY A 198
AC 2 3 N GLN A 83 ? N GLN A 201 O THR A 90 ? O THR A 208
AC 3 4 N ILE A 91 ? N ILE A 209 O THR A 126 ? O THR A 244
BA 1 2 N ALA B 15 ? N ALA B 133 O PHE B 3 ? O PHE B 121
BA 2 3 N LYS B 6 ? N LYS B 124 O VAL B 31 ? O VAL B 149
BB 1 2 N VAL B 18 ? N VAL B 136 O LYS B 21 ? O LYS B 139
BB 2 3 N VAL B 22 ? N VAL B 140 O ALA B 53 ? O ALA B 171
BB 3 4 N CYS B 52 ? N CYS B 170 O LYS B 43 ? O LYS B 161
BC 1 2 N TRP B 77 ? N TRP B 195 O GLY B 80 ? O GLY B 198
BC 2 3 N GLN B 83 ? N GLN B 201 O THR B 90 ? O THR B 208
BC 3 4 N ILE B 91 ? N ILE B 209 O THR B 126 ? O THR B 244
CA 1 2 N ALA C 15 ? N ALA C 133 O PHE C 3 ? O PHE C 121
CA 2 3 N LYS C 6 ? N LYS C 124 O VAL C 31 ? O VAL C 149
CB 1 2 N VAL C 18 ? N VAL C 136 O LYS C 21 ? O LYS C 139
CB 2 3 N VAL C 22 ? N VAL C 140 O ALA C 53 ? O ALA C 171
CB 3 4 N CYS C 52 ? N CYS C 170 O LYS C 43 ? O LYS C 161
CC 1 2 N TRP C 77 ? N TRP C 195 O GLY C 80 ? O GLY C 198
CC 2 3 N GLN C 83 ? N GLN C 201 O THR C 90 ? O THR C 208
CC 3 4 N ILE C 91 ? N ILE C 209 O THR C 126 ? O THR C 244
DA 1 2 N ALA D 15 ? N ALA D 133 O PHE D 3 ? O PHE D 121
DA 2 3 N LYS D 6 ? N LYS D 124 O VAL D 31 ? O VAL D 149
DB 1 2 N VAL D 18 ? N VAL D 136 O LYS D 21 ? O LYS D 139
DB 2 3 N VAL D 22 ? N VAL D 140 O ALA D 53 ? O ALA D 171
DB 3 4 N CYS D 52 ? N CYS D 170 O LYS D 43 ? O LYS D 161
DC 1 2 N TRP D 77 ? N TRP D 195 O GLY D 80 ? O GLY D 198
DC 2 3 N GLN D 83 ? N GLN D 201 O THR D 90 ? O THR D 208
DC 3 4 N ILE D 91 ? N ILE D 209 O THR D 126 ? O THR D 244
#
_pdbx_entry_details.entry_id 1DYL
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details
;THE STRUCTURE STUDIED IS FOR THE COMPLETE VIRUS. THE
FOLLOWING RESIDUES AND CHAINS ARE NOT REPORTED IN THIS
ENTRY:
MET A 1 TO ASP A 118
SER A 268 TO ARG A 1253
MET B 1 TO ASP B 118
SER B 268 TO ARG B 1253
MET C 1 TO ASP C 118
SER C 268 TO ARG C 1253
MET D 1 TO ASP D 118
SER D 268 TO ARG D 1253
AND CHAINS FOR THE SPIKE GLYCOPROTEINS E3, E2 AND E1
;
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
loop_
_pdbx_validate_close_contact.id
_pdbx_validate_close_contact.PDB_model_num
_pdbx_validate_close_contact.auth_atom_id_1
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_comp_id_1
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.PDB_ins_code_1
_pdbx_validate_close_contact.label_alt_id_1
_pdbx_validate_close_contact.auth_atom_id_2
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_comp_id_2
_pdbx_validate_close_contact.auth_seq_id_2
_pdbx_validate_close_contact.PDB_ins_code_2
_pdbx_validate_close_contact.label_alt_id_2
_pdbx_validate_close_contact.dist
1 1 CG B GLU 126 ? ? CB D LYS 188 ? ? 0.49
2 1 C B PRO 189 ? ? N C GLU 126 ? ? 0.51
3 1 O B HIS 125 ? ? CE1 D TYR 193 ? ? 0.62
4 1 CG2 B VAL 129 ? ? ND2 D ASN 194 ? ? 0.66
5 1 C B VAL 149 ? ? CE D LYS 227 ? ? 0.67
6 1 OE2 B GLU 126 ? ? O D LYS 188 ? ? 0.67
7 1 CB B ASP 151 ? ? O D LYS 227 ? ? 0.68
8 1 CG B LYS 124 ? ? C D ASP 225 ? ? 0.70
9 1 CB B ASP 151 ? ? C D LYS 227 ? ? 0.70
10 1 O B VAL 149 ? ? NZ D LYS 227 ? ? 0.75
11 1 ND1 B HIS 125 ? ? CD D PRO 189 ? ? 0.75
12 1 CG B LYS 128 ? ? N D TYR 193 ? ? 0.82
13 1 O B HIS 125 ? ? CZ D TYR 193 ? ? 0.86
14 1 CE1 B HIS 125 ? ? CD D PRO 189 ? ? 0.90
15 1 OD1 B ASP 151 ? ? N D ARG 229 ? ? 0.91
16 1 N B ILE 150 ? ? CD D LYS 227 ? ? 0.92
17 1 N B LYS 128 ? ? CD1 D TYR 193 ? ? 0.96
18 1 CG2 B VAL 149 ? ? NH2 D ARG 229 ? ? 0.96
19 1 C B GLY 191 ? ? CA C LYS 128 ? ? 0.96
20 1 CZ B TYR 193 ? ? CA C GLY 127 ? ? 0.97
21 1 CE2 B TYR 193 ? ? CA C GLY 127 ? ? 0.97
22 1 CA B GLY 191 ? ? CA C LYS 128 ? ? 0.98
23 1 CA B PRO 189 ? ? N C GLU 126 ? ? 0.99
24 1 CA B ASP 151 ? ? O D LYS 227 ? ? 1.05
25 1 CE1 B HIS 125 ? ? N D PRO 189 ? ? 1.05
26 1 C B GLU 190 ? ? O C HIS 125 ? ? 1.06
27 1 CG2 B VAL 149 ? ? CZ D ARG 229 ? ? 1.06
28 1 CA B ILE 150 ? ? CD D LYS 227 ? ? 1.08
29 1 C B PRO 189 ? ? C C HIS 125 ? ? 1.11
30 1 CG B LYS 124 ? ? O D ASP 225 ? ? 1.11
31 1 CG B GLU 126 ? ? CA D LYS 188 ? ? 1.12
32 1 N B GLY 191 ? ? CB C LYS 128 ? ? 1.15
33 1 N B GLU 190 ? ? C C HIS 125 ? ? 1.17
34 1 CG1 B VAL 129 ? ? CG D ASN 226 ? ? 1.20
35 1 CA B GLU 190 ? ? O C HIS 125 ? ? 1.21
36 1 CA B GLY 191 ? ? CB C LYS 128 ? ? 1.22
37 1 CB B LYS 124 ? ? CB D ASP 225 ? ? 1.22
38 1 OD2 B ASP 151 ? ? CA D GLY 228 ? ? 1.23
39 1 OE2 B GLU 126 ? ? C D LYS 188 ? ? 1.25
40 1 CE1 B HIS 125 ? ? CG D PRO 189 ? ? 1.27
41 1 CB B LYS 124 ? ? CG D ASP 225 ? ? 1.28
42 1 OH B TYR 193 ? ? N C GLY 127 ? ? 1.28
43 1 OE1 B GLU 126 ? ? CG D LYS 188 ? ? 1.29
44 1 NE2 B HIS 125 ? ? CA D PRO 189 ? ? 1.30
45 1 CD2 B TYR 202 ? ? O C GLU 126 ? ? 1.30
46 1 CA B GLY 191 ? ? C C LYS 128 ? ? 1.32
47 1 O B PRO 189 ? ? C C GLU 126 ? ? 1.32
48 1 CB B GLU 122 ? ? O D ASN 226 ? ? 1.32
49 1 ND1 B HIS 125 ? ? CG D PRO 189 ? ? 1.33
50 1 CB B VAL 149 ? ? NH2 D ARG 229 ? ? 1.34
51 1 C B PRO 189 ? ? CA C GLU 126 ? ? 1.34
52 1 NE2 B HIS 125 ? ? CB D PRO 189 ? ? 1.35
53 1 CD B GLU 126 ? ? CB D LYS 188 ? ? 1.36
54 1 O B VAL 149 ? ? CE D LYS 227 ? ? 1.37
55 1 C B VAL 149 ? ? NZ D LYS 227 ? ? 1.37
56 1 CG1 B VAL 129 ? ? OD1 D ASN 226 ? ? 1.38
57 1 N B ASP 151 ? ? CB D LYS 227 ? ? 1.39
58 1 CG B ASP 151 ? ? CA D GLY 228 ? ? 1.41
59 1 CD B GLU 126 ? ? CG D LYS 188 ? ? 1.41
60 1 CD B LYS 124 ? ? O D ASP 225 ? ? 1.45
61 1 C B HIS 125 ? ? CE1 D TYR 193 ? ? 1.46
62 1 N B TYR 202 ? ? CD C LYS 128 ? ? 1.46
63 1 CG B LYS 124 ? ? CA D ASP 225 ? ? 1.47
64 1 N B GLU 190 ? ? O C HIS 125 ? ? 1.47
65 1 O B GLY 191 ? ? CG C LYS 128 ? ? 1.48
66 1 NE2 B HIS 125 ? ? CG D PRO 189 ? ? 1.48
67 1 CB B VAL 129 ? ? OD1 D ASN 226 ? ? 1.49
68 1 CB B LYS 124 ? ? OD1 D ASP 225 ? ? 1.49
69 1 CA B VAL 129 ? ? OD1 D ASN 226 ? ? 1.49
70 1 O B PRO 189 ? ? N C GLY 127 ? ? 1.51
71 1 CA B LYS 128 ? ? CA D TYR 193 ? ? 1.52
72 1 O B GLY 191 ? ? CD C LYS 128 ? ? 1.52
73 1 N B LYS 128 ? ? CG D TYR 193 ? ? 1.52
74 1 CA B GLU 122 ? ? O D ASN 226 ? ? 1.52
75 1 CE1 B HIS 125 ? ? CA D PRO 189 ? ? 1.52
76 1 CB B LYS 128 ? ? CG D TYR 193 ? ? 1.52
77 1 O B GLY 127 ? ? O D PHE 224 ? ? 1.53
78 1 NE2 B HIS 125 ? ? C D PRO 189 ? ? 1.54
79 1 OH B TYR 193 ? ? CA C GLY 127 ? ? 1.54
80 1 N B ILE 150 ? ? CE D LYS 227 ? ? 1.54
81 1 C B GLU 122 ? ? O D ASN 226 ? ? 1.54
82 1 O B PRO 189 ? ? N C GLU 126 ? ? 1.56
83 1 O B PRO 189 ? ? CA C GLU 126 ? ? 1.57
84 1 CB B ASP 151 ? ? N D GLY 228 ? ? 1.57
85 1 O B GLU 190 ? ? O C HIS 125 ? ? 1.57
86 1 CE1 B HIS 125 ? ? CB D PRO 189 ? ? 1.59
87 1 C B VAL 149 ? ? CD D LYS 227 ? ? 1.59
88 1 N B GLU 190 ? ? N C GLU 126 ? ? 1.59
89 1 CA B ILE 150 ? ? CG D LYS 227 ? ? 1.59
90 1 O B GLU 122 ? ? CA D LYS 227 ? ? 1.60
91 1 OD1 B ASP 151 ? ? C D GLY 228 ? ? 1.61
92 1 CB B LYS 124 ? ? CA D ASP 225 ? ? 1.63
93 1 CG B HIS 125 ? ? CG D PRO 189 ? ? 1.63
94 1 C B VAL 129 ? ? OD1 D ASN 226 ? ? 1.63
95 1 CE2 B TYR 193 ? ? C C GLY 127 ? ? 1.63
96 1 CB B GLU 126 ? ? CB D LYS 188 ? ? 1.64
97 1 CA B VAL 149 ? ? CE D LYS 227 ? ? 1.64
98 1 N B GLY 127 ? ? CG2 D VAL 231 ? ? 1.64
99 1 CG2 B VAL 149 ? ? NH1 D ARG 229 ? ? 1.64
100 1 CG2 B VAL 129 ? ? CG D ASN 194 ? ? 1.68
101 1 CD B GLU 126 ? ? O D LYS 188 ? ? 1.68
102 1 CG1 B VAL 129 ? ? ND2 D ASN 226 ? ? 1.69
103 1 C B GLY 191 ? ? CB C LYS 128 ? ? 1.69
104 1 CA B LYS 128 ? ? CB D TYR 193 ? ? 1.69
105 1 CE B LYS 124 ? ? O D ASP 225 ? ? 1.70
106 1 NZ B LYS 128 ? ? C D TYR 193 ? ? 1.70
107 1 CD2 B HIS 125 ? ? CG D PRO 189 ? ? 1.70
108 1 CB B LYS 128 ? ? N D TYR 193 ? ? 1.70
109 1 CG B GLU 122 ? ? O D ASN 226 ? ? 1.72
110 1 CA B GLN 201 ? ? CE C LYS 128 ? ? 1.73
111 1 CA B LYS 128 ? ? CG D TYR 193 ? ? 1.73
112 1 O B HIS 125 ? ? OH D TYR 193 ? ? 1.73
113 1 CG B LYS 128 ? ? CA D TYR 193 ? ? 1.74
114 1 CA B LYS 124 ? ? CB D ASP 225 ? ? 1.74
115 1 CG B ASP 151 ? ? C D GLY 228 ? ? 1.75
116 1 O B PRO 189 ? ? C C HIS 125 ? ? 1.78
117 1 CG B LYS 128 ? ? C D HIS 192 ? ? 1.80
118 1 C B PRO 189 ? ? O C HIS 125 ? ? 1.81
119 1 C B HIS 125 ? ? OH D TYR 193 ? ? 1.81
120 1 CB B LYS 128 ? ? CA D TYR 193 ? ? 1.82
121 1 CD B GLU 126 ? ? CA D LYS 188 ? ? 1.82
122 1 N B HIS 192 ? ? CA C LYS 128 ? ? 1.82
123 1 OE1 B GLU 126 ? ? CD D LYS 188 ? ? 1.83
124 1 N B GLY 191 ? ? CA C LYS 128 ? ? 1.83
125 1 CB B LYS 124 ? ? C D ASP 225 ? ? 1.83
126 1 C B ASP 151 ? ? O D LYS 227 ? ? 1.83
127 1 C B HIS 125 ? ? CZ D TYR 193 ? ? 1.83
128 1 CG B ASP 151 ? ? O D LYS 227 ? ? 1.83
129 1 NE2 B HIS 125 ? ? O D PRO 189 ? ? 1.85
130 1 OD2 B ASP 151 ? ? C D GLY 228 ? ? 1.85
131 1 CA B LYS 128 ? ? CD1 D TYR 193 ? ? 1.85
132 1 O B GLY 191 ? ? CB C LYS 128 ? ? 1.86
133 1 NE2 B HIS 125 ? ? N D PRO 189 ? ? 1.87
134 1 CB B LYS 128 ? ? CD2 D TYR 193 ? ? 1.87
135 1 C B GLU 126 ? ? CG1 D VAL 231 ? ? 1.87
136 1 CA B PRO 189 ? ? CA C GLU 126 ? ? 1.88
137 1 CA B ASP 151 ? ? C D LYS 227 ? ? 1.88
138 1 O B VAL 200 ? ? NZ C LYS 128 ? ? 1.88
139 1 CG B ASP 151 ? ? N D GLY 228 ? ? 1.89
140 1 CA B GLY 191 ? ? O C LYS 128 ? ? 1.90
141 1 CG B GLU 126 ? ? CG D LYS 188 ? ? 1.90
142 1 O B PRO 189 ? ? O C HIS 125 ? ? 1.90
143 1 CG B LYS 124 ? ? N D ASN 226 ? ? 1.90
144 1 CE B LYS 128 ? ? CB D VAL 200 ? ? 1.91
145 1 O B HIS 125 ? ? CD1 D TYR 193 ? ? 1.91
146 1 CD B GLU 126 ? ? C D LYS 188 ? ? 1.91
147 1 CG B ASP 151 ? ? N D ARG 229 ? ? 1.92
148 1 CD B LYS 128 ? ? CB D TYR 193 ? ? 1.92
149 1 N B GLY 127 ? ? CB D VAL 231 ? ? 1.92
150 1 O B GLY 191 ? ? CA C LYS 128 ? ? 1.92
151 1 O B GLU 190 ? ? O C LYS 128 ? ? 1.92
152 1 CB B LYS 128 ? ? CB D TYR 193 ? ? 1.93
153 1 O B GLU 122 ? ? N D LYS 227 ? ? 1.93
154 1 N B TYR 202 ? ? CE C LYS 128 ? ? 1.93
155 1 NZ B LYS 128 ? ? O D TYR 193 ? ? 1.94
156 1 CB B LYS 128 ? ? C D HIS 192 ? ? 1.95
157 1 N B HIS 192 ? ? N C VAL 129 ? ? 1.95
158 1 C B LYS 124 ? ? CB D ASP 225 ? ? 1.95
159 1 CB B VAL 129 ? ? ND2 D ASN 194 ? ? 1.96
160 1 C B GLU 122 ? ? C D ASN 226 ? ? 1.96
161 1 O B GLU 190 ? ? C C HIS 125 ? ? 1.96
162 1 O B GLU 126 ? ? CG1 D VAL 231 ? ? 1.97
163 1 C B ILE 150 ? ? CB D LYS 227 ? ? 1.97
164 1 O B GLU 122 ? ? O D ASN 226 ? ? 1.98
165 1 CZ B TYR 193 ? ? N C GLY 127 ? ? 1.99
166 1 N B LYS 128 ? ? CB D TYR 193 ? ? 2.00
167 1 CA B VAL 149 ? ? NZ D LYS 227 ? ? 2.00
168 1 ND1 B HIS 125 ? ? N D PRO 189 ? ? 2.00
169 1 CD2 B HIS 125 ? ? O D PRO 189 ? ? 2.01
170 1 OE2 B GLU 126 ? ? CA D LYS 188 ? ? 2.01
171 1 OE1 B GLU 126 ? ? CB D LYS 188 ? ? 2.02
172 1 CB B PRO 189 ? ? N C GLU 126 ? ? 2.03
173 1 O B GLU 190 ? ? CA C HIS 125 ? ? 2.04
174 1 CA B GLU 190 ? ? C C HIS 125 ? ? 2.04
175 1 CA B LYS 124 ? ? N D ASN 226 ? ? 2.04
176 1 O B LYS 188 ? ? CA C GLU 126 ? ? 2.04
177 1 CG B ASP 151 ? ? C D LYS 227 ? ? 2.05
178 1 C B GLN 201 ? ? CE C LYS 128 ? ? 2.05
179 1 O B VAL 149 ? ? CD D LYS 227 ? ? 2.05
180 1 N B ASP 151 ? ? CA D LYS 227 ? ? 2.05
181 1 N B PRO 189 ? ? CA C GLU 126 ? ? 2.05
182 1 N B PRO 189 ? ? N C GLU 126 ? ? 2.06
183 1 CD2 B TYR 193 ? ? O C GLY 127 ? ? 2.06
184 1 CG B HIS 125 ? ? CD D PRO 189 ? ? 2.06
185 1 C B GLY 191 ? ? C C LYS 128 ? ? 2.07
186 1 O B GLU 190 ? ? N C HIS 125 ? ? 2.08
187 1 C B GLY 127 ? ? O D PHE 224 ? ? 2.08
188 1 CG B LYS 124 ? ? N D ASP 225 ? ? 2.08
189 1 N B VAL 149 ? ? NZ D LYS 227 ? ? 2.08
190 1 C B GLY 191 ? ? CG C LYS 128 ? ? 2.09
191 1 CG1 B VAL 149 ? ? NH2 D ARG 229 ? ? 2.10
192 1 O B HIS 125 ? ? CE2 D TYR 193 ? ? 2.10
193 1 CG B HIS 125 ? ? OH D TYR 193 ? ? 2.10
194 1 NE2 B HIS 125 ? ? CD D PRO 189 ? ? 2.10
195 1 O B GLU 122 ? ? C D ASN 226 ? ? 2.11
196 1 OD1 B ASP 151 ? ? CA D ARG 229 ? ? 2.11
197 1 O B GLY 191 ? ? NZ C LYS 128 ? ? 2.12
198 1 O B LYS 188 ? ? CG C GLU 126 ? ? 2.13
199 1 CD B LYS 124 ? ? C D ASP 225 ? ? 2.13
200 1 N B GLY 191 ? ? N C LYS 128 ? ? 2.13
201 1 CG B LYS 128 ? ? CB D TYR 193 ? ? 2.13
202 1 C B GLY 127 ? ? CD1 D TYR 193 ? ? 2.14
203 1 CD B LYS 124 ? ? N D ASP 225 ? ? 2.14
204 1 C B GLU 190 ? ? C C HIS 125 ? ? 2.14
205 1 N B THR 130 ? ? OD1 D ASN 226 ? ? 2.14
206 1 CA B HIS 192 ? ? NZ C LYS 128 ? ? 2.15
207 1 CB B ASP 151 ? ? CA D LYS 227 ? ? 2.15
208 1 O B ASP 151 ? ? O D LYS 227 ? ? 2.15
209 1 C B LYS 188 ? ? CA C GLU 126 ? ? 2.15
210 1 O B GLY 191 ? ? CE C LYS 128 ? ? 2.15
211 1 CA B GLY 191 ? ? N C LYS 128 ? ? 2.15
212 1 N B GLY 191 ? ? O C HIS 125 ? ? 2.16
213 1 C B PRO 189 ? ? C C GLU 126 ? ? 2.16
214 1 CD B LYS 128 ? ? O D VAL 200 ? ? 2.16
215 1 CA B PRO 189 ? ? C C HIS 125 ? ? 2.16
216 1 CB B LYS 128 ? ? O D HIS 192 ? ? 2.17
217 1 C B HIS 192 ? ? O C GLY 127 ? ? 2.17
218 1 CE2 B TYR 193 ? ? O C GLY 127 ? ? 2.17
219 1 N B ASP 151 ? ? O D LYS 227 ? ? 2.17
220 1 C B GLU 126 ? ? CG2 D VAL 231 ? ? 2.17
221 1 C B GLU 126 ? ? CB D VAL 231 ? ? 2.18
222 1 CD B LYS 128 ? ? N D TYR 193 ? ? 2.19
223 1 N B HIS 125 ? ? CB D ASP 225 ? ? 2.19
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 CA A CYS 134 ? ? CB A CYS 134 ? ? SG A CYS 134 ? ? 121.35 114.20 7.15 1.10 N
2 1 CA B CYS 134 ? ? CB B CYS 134 ? ? SG B CYS 134 ? ? 121.32 114.20 7.12 1.10 N
3 1 CA C CYS 134 ? ? CB C CYS 134 ? ? SG C CYS 134 ? ? 121.32 114.20 7.12 1.10 N
4 1 CA D CYS 134 ? ? CB D CYS 134 ? ? SG D CYS 134 ? ? 121.31 114.20 7.11 1.10 N
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 ASP A 151 ? ? -75.94 41.62
2 1 GLU A 169 ? ? -162.15 76.16
3 1 GLU A 187 ? ? -61.62 95.83
4 1 HIS A 197 ? ? -99.80 52.42
5 1 ASN A 252 ? ? -164.90 79.68
6 1 ASP B 151 ? ? -76.00 41.64
7 1 GLU B 169 ? ? -162.14 76.26
8 1 GLU B 187 ? ? -61.63 95.72
9 1 HIS B 197 ? ? -99.77 52.54
10 1 ASN B 252 ? ? -164.88 79.66
11 1 ASP C 151 ? ? -76.03 41.64
12 1 GLU C 169 ? ? -162.15 76.21
13 1 GLU C 187 ? ? -61.59 95.66
14 1 HIS C 197 ? ? -99.71 52.48
15 1 ASN C 252 ? ? -164.90 79.70
16 1 ASP D 151 ? ? -75.88 41.52
17 1 GLU D 169 ? ? -162.22 76.20
18 1 GLU D 187 ? ? -61.65 95.63
19 1 HIS D 197 ? ? -99.87 52.55
20 1 ASN D 252 ? ? -164.88 79.59
#
_pdbx_point_symmetry.entry_id 1DYL
_pdbx_point_symmetry.Schoenflies_symbol I
#
_pdbx_database_remark.id 700
_pdbx_database_remark.text
;
SHEET
DETERMINATION METHOD: DSSP
THE SHEETS PRESENTED AS [A,B,C,D]C IN EACH CHAIN ON SHEET RECORDS
BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY
A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS
ARE IDENTICAL.
;
#
_em_3d_fitting.id 1
_em_3d_fitting.entry_id 1DYL
_em_3d_fitting.ref_protocol 'RIGID BODY FIT'
_em_3d_fitting.ref_space REAL
_em_3d_fitting.overall_b_value ?
_em_3d_fitting.target_criteria R-factor
_em_3d_fitting.details
;METHOD--THE CRYSTAL STRUCTURE OF THE CAPSID PROTEIN FROM CHOI ET AL (1997)
PROTEINS 3 27,345-359 (SUBUNIT A OF PDB FILE 1VCQ) WAS PLACED INTO THE CRYO-EM
DENSITY MAP. THE CAPSID PROTEIN WAS FIRST MANUALLY POSITIONED INTO THE CRYO-EM
DENSITY CORRESPONDING TO POSITIONS OF THE FOUR INDEPENDENT MONOMER DENSITIES
BETWEEN THE INNER LEAFLET OF THE BILAYER AND THE RNA. THESE POSITIONS WERE THEN
REFINED BY RIGID BODY REFINEMENT IN REAL SPACE WITH THE PROGRAM EMFIT (CHENG ET
AL. 1995, CELL 80, 621-630). THE QUALITY OF THE FIT CAN BE SEEN FROM THE MAP
DENSITY WITHIN THE PROTEIN. ALL 4563 ATOMS ARE IN DENSITY OF AT LEAST 4 SIGMA
(96.73) ABOVE THE AVERAGE (512.04) , 1167 ATOMS ARE IN DENSITY BETWEEN 4 AND 5
SIGMA, 3174 ATOMS ARE IN DENSITY BETWEEN 5 AND 6 SIGMA, AND 222 ATOMS ARE IN
DENSTY OF 6 SIGMA OR ABOVE. THE VARIATION IN DENSITY OVER THE FITTED PROTEIN
CAN BE VISUALIZED WITH THE PSEUDO TEMPERATURE FACTOR. THE DENSITY VALUE AT EACH
ATOM IS GIVEN IN THE 8TH COLUM (USUALLY THE OCCUPANCY) AS THE NUMBER OF
STANDARD DEVIATION ABOVE BACKGROUND. COLUMN NINE (USUALLY THE TEMPERATURE
FACTOR) CONTAINS THE VALUE OF THE RELATIVE DENSITY WITHIN THE FITTED PROTEIN
SCALED LINEARLY SO THAT THE MINIMUM DENSITY IS 100.0 AND THE MAXIMUM DENSITY IS
1.0. THE ATOMS THAT LIE IN THE LOWER DENSITY REGIONS WILL HAVE THE HIGHEST
PSEUDO TEMPERATURE FACTORS. REFINEMENT PROTOCOL--RIGID BODY REFINEMENT
;
_em_3d_fitting.method ?
#
_em_3d_fitting_list.id 1
_em_3d_fitting_list.3d_fitting_id 1
_em_3d_fitting_list.pdb_entry_id 1DYL
_em_3d_fitting_list.pdb_chain_id ?
_em_3d_fitting_list.initial_refinement_model_id 1
_em_3d_fitting_list.chain_id ?
_em_3d_fitting_list.chain_residue_range ?
_em_3d_fitting_list.pdb_chain_residue_range ?
_em_3d_fitting_list.source_name PDB
_em_3d_fitting_list.type 'experimental model'
_em_3d_fitting_list.accession_code 1DYL
_em_3d_fitting_list.details ?
#
_em_3d_reconstruction.entry_id 1DYL
_em_3d_reconstruction.id 1
_em_3d_reconstruction.symmetry_type POINT
_em_3d_reconstruction.num_particles 5267
_em_3d_reconstruction.image_processing_id 1
_em_3d_reconstruction.method
;MODEL-BASED, POLAR-FOURIER- TRANSFORMATION (FULLER ET AL. 1996, J.STRUC.BIOL. 116, 48-55; BAKER AND CHENG 1996, J.STRUC.BIOL. 116, 120- 130) MODEL-BASED CROSS COMMOM LINES SEARCH AND REFINEMENT (CROWTHER ET AL. 1970, NATURE (LONDON) 226, 421- 425; FULLER ET AL. 1996, J.STRUC.BIOL. 11 48-55;FERLENGHI ET AL. 1998, J.MOL.BIOL. 283, 71-81)
;
_em_3d_reconstruction.nominal_pixel_size 2.640
_em_3d_reconstruction.actual_pixel_size 2.520
_em_3d_reconstruction.resolution 9.000
_em_3d_reconstruction.magnification_calibration
;THE PIXEL SIZE OF THE CRYO-EM MAP WAS CALIBRATED AGAINST A LOW RESOLUTION DENSITY MAP CALCULATED FROM THE CRYSTAL STRUCTURE OF HRV16. DENSITIES WERE COMPARED BY CROSS- CORRELATION WITHIN A SPHERICAL SHELL OF INTERNAL RADIUS 110 ANGSTROMS AND EXTERNAL RADIUS OF 145 ANGSTROMS.
;
_em_3d_reconstruction.details
;THE ORIENTATIONS WERE REFINED BY THE CROSS COMMON LINES LINES METHOD (SIMPLEX) AND THE POLAR FOURIER TRANSFORM METHOD USING A PARALLEL IMPLEMENTATION (PYPFT). THE EFFECTIVE RESOLUTION OF THE FINAL RECONSTRUCTED DENSITY WAS DETERMINED TO BE AT LEAST 9 ANGSTROMS, AS MEASURED BY RANDOMLY SPLITTING THE PARTICLES INTO TWO SETS AND CALCULATING THE FOURIER SHELL CORRELATION OBTAINED FROM SEPARATE RECONSTRUCTIONS (HARAUZ AND VAN HEEL 1986, OPTIK 73, 146-156). THE EIGENVALUE SPECTRUM GAVE AN INDICATION OF THE RANDOMNESS OF THE DATA THAT WAS INCLUDED IN THE RECONSTRUCTION. THE COMPLETENESS OF THE DATA WAS VERIFIED IN THAT ALL EIGENVALUES EXCEEDED 100. THE COORDINATES ARE IN THE P, Q, R FRAME IN ANGSTROM UNITS AND CORRESPOND TO ICOSAHEDRAL SYMMETRY AXES. THE ORIGIN IS CHOSEN AT THE CENTER OF THE VIRUS WITH P, Q AND R ALONG MUTUALLY PERPENDICULAR TWO-FOLD AXES OF THE ICOSAHEDRON. THEY SHOULD REMAIN IN THAT FRAME FOR THE EASE OF THE USER IN CREATING THE BIOLOGICALLY SIGNIFICANT VIRAL COMPLEX PARTICLE USING THE 60 ICOSAHEDRAL SYMMETRY OPERATORS. RESIDUES NOT VISIBLE IN THE ORIGINAL CRYSTAL STRUCTURES ARE NOT INCLUDED IN THE CRYO-EM STRUCTURE MODEL. FOR EXAMPLE, C RESIDUES 1-118, ARE NOT VISIBLE IN THE CRYSTAL STRUCTURE (PDB ENTRY 1VCQ) AND THEREFORE ARE NOT INCLUDED IN THE COORDINATES BELOW.
;
_em_3d_reconstruction.num_class_averages ?
_em_3d_reconstruction.resolution_method ?
_em_3d_reconstruction.algorithm ?
_em_3d_reconstruction.refinement_type ?
#
_em_buffer.id 1
_em_buffer.specimen_id 1
_em_buffer.name ?
_em_buffer.pH 7.6
_em_buffer.details ?
#
_em_entity_assembly.id 1
_em_entity_assembly.name 'SEMLIKI FOREST VIRUS'
_em_entity_assembly.type VIRUS
_em_entity_assembly.parent_id 0
_em_entity_assembly.synonym ?
_em_entity_assembly.details ?
_em_entity_assembly.oligomeric_details ?
#
_em_image_scans.entry_id 1DYL
_em_image_scans.id 1
_em_image_scans.image_recording_id 1
_em_image_scans.number_digital_images 48
_em_image_scans.citation_id ?
_em_image_scans.od_range ?
_em_image_scans.quant_bit_size ?
_em_image_scans.sampling_size ?
_em_image_scans.scanner_model ?
_em_image_scans.details ?
#
_em_imaging.entry_id 1DYL
_em_imaging.id 1
_em_imaging.microscope_model 'FEI/PHILIPS CM200FEG'
_em_imaging.mode 'BRIGHT FIELD'
_em_imaging.illumination_mode OTHER
_em_imaging.specimen_id 1
_em_imaging.date 1998-06-15
_em_imaging.temperature 95
_em_imaging.nominal_defocus_min 975
_em_imaging.nominal_defocus_max 7600
_em_imaging.tilt_angle_min 0
_em_imaging.tilt_angle_max 0
_em_imaging.nominal_cs 2
_em_imaging.nominal_magnification 50000
_em_imaging.calibrated_magnification ?
_em_imaging.electron_source 'FIELD EMISSION GUN'
_em_imaging.accelerating_voltage 200
_em_imaging.details ?
_em_imaging.specimen_holder_type .
_em_imaging.specimen_holder_model .
_em_imaging.citation_id ?
_em_imaging.astigmatism ?
_em_imaging.detector_distance ?
_em_imaging.electron_beam_tilt_params ?
_em_imaging.recording_temperature_maximum ?
_em_imaging.recording_temperature_minimum ?
#
_em_sample_support.id 1
_em_sample_support.specimen_id 1
_em_sample_support.details '400 MESH COPPER, HOLEY CARBON, GLOW DISCHARGE,'
_em_sample_support.method ?
_em_sample_support.film_material ?
_em_sample_support.grid_material COPPER
_em_sample_support.grid_mesh_size 400
_em_sample_support.grid_type ?
#
_em_vitrification.entry_id 1DYL
_em_vitrification.id 1
_em_vitrification.instrument 'HOMEMADE PLUNGER'
_em_vitrification.cryogen_name ETHANE
_em_vitrification.specimen_id 1
_em_vitrification.details
;PLUNGE VITRIFICATION SAMPLES PREPARED AS THIN LAYERS OF VITREOUS ICE MAINTAINED AT NEAR LIQUID NITROGEN TEMPERATURE IN THE ELECTRON MICROSCOPE WITH A GATAN 626-0300 CRYOTRANSFER HOLDER.
;
_em_vitrification.citation_id ?
_em_vitrification.humidity ?
_em_vitrification.method ?
_em_vitrification.temp ?
_em_vitrification.time_resolved_state ?
_em_vitrification.chamber_temperature ?
#
_em_experiment.entry_id 1DYL
_em_experiment.id 1
_em_experiment.aggregation_state PARTICLE
_em_experiment.entity_assembly_id 1
_em_experiment.reconstruction_method 'SINGLE PARTICLE'
#
_em_single_particle_entity.entry_id 1DYL
_em_single_particle_entity.id 1
_em_single_particle_entity.point_symmetry I
_em_single_particle_entity.image_processing_id 1
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
CYS N N N N 74
CYS CA C N R 75
CYS C C N N 76
CYS O O N N 77
CYS CB C N N 78
CYS SG S N N 79
CYS OXT O N N 80
CYS H H N N 81
CYS H2 H N N 82
CYS HA H N N 83
CYS HB2 H N N 84
CYS HB3 H N N 85
CYS HG H N N 86
CYS HXT H N N 87
GLN N N N N 88
GLN CA C N S 89
GLN C C N N 90
GLN O O N N 91
GLN CB C N N 92
GLN CG C N N 93
GLN CD C N N 94
GLN OE1 O N N 95
GLN NE2 N N N 96
GLN OXT O N N 97
GLN H H N N 98
GLN H2 H N N 99
GLN HA H N N 100
GLN HB2 H N N 101
GLN HB3 H N N 102
GLN HG2 H N N 103
GLN HG3 H N N 104
GLN HE21 H N N 105
GLN HE22 H N N 106
GLN HXT H N N 107
GLU N N N N 108
GLU CA C N S 109
GLU C C N N 110
GLU O O N N 111
GLU CB C N N 112
GLU CG C N N 113
GLU CD C N N 114
GLU OE1 O N N 115
GLU OE2 O N N 116
GLU OXT O N N 117
GLU H H N N 118
GLU H2 H N N 119
GLU HA H N N 120
GLU HB2 H N N 121
GLU HB3 H N N 122
GLU HG2 H N N 123
GLU HG3 H N N 124
GLU HE2 H N N 125
GLU HXT H N N 126
GLY N N N N 127
GLY CA C N N 128
GLY C C N N 129
GLY O O N N 130
GLY OXT O N N 131
GLY H H N N 132
GLY H2 H N N 133
GLY HA2 H N N 134
GLY HA3 H N N 135
GLY HXT H N N 136
HIS N N N N 137
HIS CA C N S 138
HIS C C N N 139
HIS O O N N 140
HIS CB C N N 141
HIS CG C Y N 142
HIS ND1 N Y N 143
HIS CD2 C Y N 144
HIS CE1 C Y N 145
HIS NE2 N Y N 146
HIS OXT O N N 147
HIS H H N N 148
HIS H2 H N N 149
HIS HA H N N 150
HIS HB2 H N N 151
HIS HB3 H N N 152
HIS HD1 H N N 153
HIS HD2 H N N 154
HIS HE1 H N N 155
HIS HE2 H N N 156
HIS HXT H N N 157
ILE N N N N 158
ILE CA C N S 159
ILE C C N N 160
ILE O O N N 161
ILE CB C N S 162
ILE CG1 C N N 163
ILE CG2 C N N 164
ILE CD1 C N N 165
ILE OXT O N N 166
ILE H H N N 167
ILE H2 H N N 168
ILE HA H N N 169
ILE HB H N N 170
ILE HG12 H N N 171
ILE HG13 H N N 172
ILE HG21 H N N 173
ILE HG22 H N N 174
ILE HG23 H N N 175
ILE HD11 H N N 176
ILE HD12 H N N 177
ILE HD13 H N N 178
ILE HXT H N N 179
LEU N N N N 180
LEU CA C N S 181
LEU C C N N 182
LEU O O N N 183
LEU CB C N N 184
LEU CG C N N 185
LEU CD1 C N N 186
LEU CD2 C N N 187
LEU OXT O N N 188
LEU H H N N 189
LEU H2 H N N 190
LEU HA H N N 191
LEU HB2 H N N 192
LEU HB3 H N N 193
LEU HG H N N 194
LEU HD11 H N N 195
LEU HD12 H N N 196
LEU HD13 H N N 197
LEU HD21 H N N 198
LEU HD22 H N N 199
LEU HD23 H N N 200
LEU HXT H N N 201
LYS N N N N 202
LYS CA C N S 203
LYS C C N N 204
LYS O O N N 205
LYS CB C N N 206
LYS CG C N N 207
LYS CD C N N 208
LYS CE C N N 209
LYS NZ N N N 210
LYS OXT O N N 211
LYS H H N N 212
LYS H2 H N N 213
LYS HA H N N 214
LYS HB2 H N N 215
LYS HB3 H N N 216
LYS HG2 H N N 217
LYS HG3 H N N 218
LYS HD2 H N N 219
LYS HD3 H N N 220
LYS HE2 H N N 221
LYS HE3 H N N 222
LYS HZ1 H N N 223
LYS HZ2 H N N 224
LYS HZ3 H N N 225
LYS HXT H N N 226
MET N N N N 227
MET CA C N S 228
MET C C N N 229
MET O O N N 230
MET CB C N N 231
MET CG C N N 232
MET SD S N N 233
MET CE C N N 234
MET OXT O N N 235
MET H H N N 236
MET H2 H N N 237
MET HA H N N 238
MET HB2 H N N 239
MET HB3 H N N 240
MET HG2 H N N 241
MET HG3 H N N 242
MET HE1 H N N 243
MET HE2 H N N 244
MET HE3 H N N 245
MET HXT H N N 246
PHE N N N N 247
PHE CA C N S 248
PHE C C N N 249
PHE O O N N 250
PHE CB C N N 251
PHE CG C Y N 252
PHE CD1 C Y N 253
PHE CD2 C Y N 254
PHE CE1 C Y N 255
PHE CE2 C Y N 256
PHE CZ C Y N 257
PHE OXT O N N 258
PHE H H N N 259
PHE H2 H N N 260
PHE HA H N N 261
PHE HB2 H N N 262
PHE HB3 H N N 263
PHE HD1 H N N 264
PHE HD2 H N N 265
PHE HE1 H N N 266
PHE HE2 H N N 267
PHE HZ H N N 268
PHE HXT H N N 269
PRO N N N N 270
PRO CA C N S 271
PRO C C N N 272
PRO O O N N 273
PRO CB C N N 274
PRO CG C N N 275
PRO CD C N N 276
PRO OXT O N N 277
PRO H H N N 278
PRO HA H N N 279
PRO HB2 H N N 280
PRO HB3 H N N 281
PRO HG2 H N N 282
PRO HG3 H N N 283
PRO HD2 H N N 284
PRO HD3 H N N 285
PRO HXT H N N 286
SER N N N N 287
SER CA C N S 288
SER C C N N 289
SER O O N N 290
SER CB C N N 291
SER OG O N N 292
SER OXT O N N 293
SER H H N N 294
SER H2 H N N 295
SER HA H N N 296
SER HB2 H N N 297
SER HB3 H N N 298
SER HG H N N 299
SER HXT H N N 300
THR N N N N 301
THR CA C N S 302
THR C C N N 303
THR O O N N 304
THR CB C N R 305
THR OG1 O N N 306
THR CG2 C N N 307
THR OXT O N N 308
THR H H N N 309
THR H2 H N N 310
THR HA H N N 311
THR HB H N N 312
THR HG1 H N N 313
THR HG21 H N N 314
THR HG22 H N N 315
THR HG23 H N N 316
THR HXT H N N 317
TRP N N N N 318
TRP CA C N S 319
TRP C C N N 320
TRP O O N N 321
TRP CB C N N 322
TRP CG C Y N 323
TRP CD1 C Y N 324
TRP CD2 C Y N 325
TRP NE1 N Y N 326
TRP CE2 C Y N 327
TRP CE3 C Y N 328
TRP CZ2 C Y N 329
TRP CZ3 C Y N 330
TRP CH2 C Y N 331
TRP OXT O N N 332
TRP H H N N 333
TRP H2 H N N 334
TRP HA H N N 335
TRP HB2 H N N 336
TRP HB3 H N N 337
TRP HD1 H N N 338
TRP HE1 H N N 339
TRP HE3 H N N 340
TRP HZ2 H N N 341
TRP HZ3 H N N 342
TRP HH2 H N N 343
TRP HXT H N N 344
TYR N N N N 345
TYR CA C N S 346
TYR C C N N 347
TYR O O N N 348
TYR CB C N N 349
TYR CG C Y N 350
TYR CD1 C Y N 351
TYR CD2 C Y N 352
TYR CE1 C Y N 353
TYR CE2 C Y N 354
TYR CZ C Y N 355
TYR OH O N N 356
TYR OXT O N N 357
TYR H H N N 358
TYR H2 H N N 359
TYR HA H N N 360
TYR HB2 H N N 361
TYR HB3 H N N 362
TYR HD1 H N N 363
TYR HD2 H N N 364
TYR HE1 H N N 365
TYR HE2 H N N 366
TYR HH H N N 367
TYR HXT H N N 368
VAL N N N N 369
VAL CA C N S 370
VAL C C N N 371
VAL O O N N 372
VAL CB C N N 373
VAL CG1 C N N 374
VAL CG2 C N N 375
VAL OXT O N N 376
VAL H H N N 377
VAL H2 H N N 378
VAL HA H N N 379
VAL HB H N N 380
VAL HG11 H N N 381
VAL HG12 H N N 382
VAL HG13 H N N 383
VAL HG21 H N N 384
VAL HG22 H N N 385
VAL HG23 H N N 386
VAL HXT H N N 387
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
CYS N CA sing N N 70
CYS N H sing N N 71
CYS N H2 sing N N 72
CYS CA C sing N N 73
CYS CA CB sing N N 74
CYS CA HA sing N N 75
CYS C O doub N N 76
CYS C OXT sing N N 77
CYS CB SG sing N N 78
CYS CB HB2 sing N N 79
CYS CB HB3 sing N N 80
CYS SG HG sing N N 81
CYS OXT HXT sing N N 82
GLN N CA sing N N 83
GLN N H sing N N 84
GLN N H2 sing N N 85
GLN CA C sing N N 86
GLN CA CB sing N N 87
GLN CA HA sing N N 88
GLN C O doub N N 89
GLN C OXT sing N N 90
GLN CB CG sing N N 91
GLN CB HB2 sing N N 92
GLN CB HB3 sing N N 93
GLN CG CD sing N N 94
GLN CG HG2 sing N N 95
GLN CG HG3 sing N N 96
GLN CD OE1 doub N N 97
GLN CD NE2 sing N N 98
GLN NE2 HE21 sing N N 99
GLN NE2 HE22 sing N N 100
GLN OXT HXT sing N N 101
GLU N CA sing N N 102
GLU N H sing N N 103
GLU N H2 sing N N 104
GLU CA C sing N N 105
GLU CA CB sing N N 106
GLU CA HA sing N N 107
GLU C O doub N N 108
GLU C OXT sing N N 109
GLU CB CG sing N N 110
GLU CB HB2 sing N N 111
GLU CB HB3 sing N N 112
GLU CG CD sing N N 113
GLU CG HG2 sing N N 114
GLU CG HG3 sing N N 115
GLU CD OE1 doub N N 116
GLU CD OE2 sing N N 117
GLU OE2 HE2 sing N N 118
GLU OXT HXT sing N N 119
GLY N CA sing N N 120
GLY N H sing N N 121
GLY N H2 sing N N 122
GLY CA C sing N N 123
GLY CA HA2 sing N N 124
GLY CA HA3 sing N N 125
GLY C O doub N N 126
GLY C OXT sing N N 127
GLY OXT HXT sing N N 128
HIS N CA sing N N 129
HIS N H sing N N 130
HIS N H2 sing N N 131
HIS CA C sing N N 132
HIS CA CB sing N N 133
HIS CA HA sing N N 134
HIS C O doub N N 135
HIS C OXT sing N N 136
HIS CB CG sing N N 137
HIS CB HB2 sing N N 138
HIS CB HB3 sing N N 139
HIS CG ND1 sing Y N 140
HIS CG CD2 doub Y N 141
HIS ND1 CE1 doub Y N 142
HIS ND1 HD1 sing N N 143
HIS CD2 NE2 sing Y N 144
HIS CD2 HD2 sing N N 145
HIS CE1 NE2 sing Y N 146
HIS CE1 HE1 sing N N 147
HIS NE2 HE2 sing N N 148
HIS OXT HXT sing N N 149
ILE N CA sing N N 150
ILE N H sing N N 151
ILE N H2 sing N N 152
ILE CA C sing N N 153
ILE CA CB sing N N 154
ILE CA HA sing N N 155
ILE C O doub N N 156
ILE C OXT sing N N 157
ILE CB CG1 sing N N 158
ILE CB CG2 sing N N 159
ILE CB HB sing N N 160
ILE CG1 CD1 sing N N 161
ILE CG1 HG12 sing N N 162
ILE CG1 HG13 sing N N 163
ILE CG2 HG21 sing N N 164
ILE CG2 HG22 sing N N 165
ILE CG2 HG23 sing N N 166
ILE CD1 HD11 sing N N 167
ILE CD1 HD12 sing N N 168
ILE CD1 HD13 sing N N 169
ILE OXT HXT sing N N 170
LEU N CA sing N N 171
LEU N H sing N N 172
LEU N H2 sing N N 173
LEU CA C sing N N 174
LEU CA CB sing N N 175
LEU CA HA sing N N 176
LEU C O doub N N 177
LEU C OXT sing N N 178
LEU CB CG sing N N 179
LEU CB HB2 sing N N 180
LEU CB HB3 sing N N 181
LEU CG CD1 sing N N 182
LEU CG CD2 sing N N 183
LEU CG HG sing N N 184
LEU CD1 HD11 sing N N 185
LEU CD1 HD12 sing N N 186
LEU CD1 HD13 sing N N 187
LEU CD2 HD21 sing N N 188
LEU CD2 HD22 sing N N 189
LEU CD2 HD23 sing N N 190
LEU OXT HXT sing N N 191
LYS N CA sing N N 192
LYS N H sing N N 193
LYS N H2 sing N N 194
LYS CA C sing N N 195
LYS CA CB sing N N 196
LYS CA HA sing N N 197
LYS C O doub N N 198
LYS C OXT sing N N 199
LYS CB CG sing N N 200
LYS CB HB2 sing N N 201
LYS CB HB3 sing N N 202
LYS CG CD sing N N 203
LYS CG HG2 sing N N 204
LYS CG HG3 sing N N 205
LYS CD CE sing N N 206
LYS CD HD2 sing N N 207
LYS CD HD3 sing N N 208
LYS CE NZ sing N N 209
LYS CE HE2 sing N N 210
LYS CE HE3 sing N N 211
LYS NZ HZ1 sing N N 212
LYS NZ HZ2 sing N N 213
LYS NZ HZ3 sing N N 214
LYS OXT HXT sing N N 215
MET N CA sing N N 216
MET N H sing N N 217
MET N H2 sing N N 218
MET CA C sing N N 219
MET CA CB sing N N 220
MET CA HA sing N N 221
MET C O doub N N 222
MET C OXT sing N N 223
MET CB CG sing N N 224
MET CB HB2 sing N N 225
MET CB HB3 sing N N 226
MET CG SD sing N N 227
MET CG HG2 sing N N 228
MET CG HG3 sing N N 229
MET SD CE sing N N 230
MET CE HE1 sing N N 231
MET CE HE2 sing N N 232
MET CE HE3 sing N N 233
MET OXT HXT sing N N 234
PHE N CA sing N N 235
PHE N H sing N N 236
PHE N H2 sing N N 237
PHE CA C sing N N 238
PHE CA CB sing N N 239
PHE CA HA sing N N 240
PHE C O doub N N 241
PHE C OXT sing N N 242
PHE CB CG sing N N 243
PHE CB HB2 sing N N 244
PHE CB HB3 sing N N 245
PHE CG CD1 doub Y N 246
PHE CG CD2 sing Y N 247
PHE CD1 CE1 sing Y N 248
PHE CD1 HD1 sing N N 249
PHE CD2 CE2 doub Y N 250
PHE CD2 HD2 sing N N 251
PHE CE1 CZ doub Y N 252
PHE CE1 HE1 sing N N 253
PHE CE2 CZ sing Y N 254
PHE CE2 HE2 sing N N 255
PHE CZ HZ sing N N 256
PHE OXT HXT sing N N 257
PRO N CA sing N N 258
PRO N CD sing N N 259
PRO N H sing N N 260
PRO CA C sing N N 261
PRO CA CB sing N N 262
PRO CA HA sing N N 263
PRO C O doub N N 264
PRO C OXT sing N N 265
PRO CB CG sing N N 266
PRO CB HB2 sing N N 267
PRO CB HB3 sing N N 268
PRO CG CD sing N N 269
PRO CG HG2 sing N N 270
PRO CG HG3 sing N N 271
PRO CD HD2 sing N N 272
PRO CD HD3 sing N N 273
PRO OXT HXT sing N N 274
SER N CA sing N N 275
SER N H sing N N 276
SER N H2 sing N N 277
SER CA C sing N N 278
SER CA CB sing N N 279
SER CA HA sing N N 280
SER C O doub N N 281
SER C OXT sing N N 282
SER CB OG sing N N 283
SER CB HB2 sing N N 284
SER CB HB3 sing N N 285
SER OG HG sing N N 286
SER OXT HXT sing N N 287
THR N CA sing N N 288
THR N H sing N N 289
THR N H2 sing N N 290
THR CA C sing N N 291
THR CA CB sing N N 292
THR CA HA sing N N 293
THR C O doub N N 294
THR C OXT sing N N 295
THR CB OG1 sing N N 296
THR CB CG2 sing N N 297
THR CB HB sing N N 298
THR OG1 HG1 sing N N 299
THR CG2 HG21 sing N N 300
THR CG2 HG22 sing N N 301
THR CG2 HG23 sing N N 302
THR OXT HXT sing N N 303
TRP N CA sing N N 304
TRP N H sing N N 305
TRP N H2 sing N N 306
TRP CA C sing N N 307
TRP CA CB sing N N 308
TRP CA HA sing N N 309
TRP C O doub N N 310
TRP C OXT sing N N 311
TRP CB CG sing N N 312
TRP CB HB2 sing N N 313
TRP CB HB3 sing N N 314
TRP CG CD1 doub Y N 315
TRP CG CD2 sing Y N 316
TRP CD1 NE1 sing Y N 317
TRP CD1 HD1 sing N N 318
TRP CD2 CE2 doub Y N 319
TRP CD2 CE3 sing Y N 320
TRP NE1 CE2 sing Y N 321
TRP NE1 HE1 sing N N 322
TRP CE2 CZ2 sing Y N 323
TRP CE3 CZ3 doub Y N 324
TRP CE3 HE3 sing N N 325
TRP CZ2 CH2 doub Y N 326
TRP CZ2 HZ2 sing N N 327
TRP CZ3 CH2 sing Y N 328
TRP CZ3 HZ3 sing N N 329
TRP CH2 HH2 sing N N 330
TRP OXT HXT sing N N 331
TYR N CA sing N N 332
TYR N H sing N N 333
TYR N H2 sing N N 334
TYR CA C sing N N 335
TYR CA CB sing N N 336
TYR CA HA sing N N 337
TYR C O doub N N 338
TYR C OXT sing N N 339
TYR CB CG sing N N 340
TYR CB HB2 sing N N 341
TYR CB HB3 sing N N 342
TYR CG CD1 doub Y N 343
TYR CG CD2 sing Y N 344
TYR CD1 CE1 sing Y N 345
TYR CD1 HD1 sing N N 346
TYR CD2 CE2 doub Y N 347
TYR CD2 HD2 sing N N 348
TYR CE1 CZ doub Y N 349
TYR CE1 HE1 sing N N 350
TYR CE2 CZ sing Y N 351
TYR CE2 HE2 sing N N 352
TYR CZ OH sing N N 353
TYR OH HH sing N N 354
TYR OXT HXT sing N N 355
VAL N CA sing N N 356
VAL N H sing N N 357
VAL N H2 sing N N 358
VAL CA C sing N N 359
VAL CA CB sing N N 360
VAL CA HA sing N N 361
VAL C O doub N N 362
VAL C OXT sing N N 363
VAL CB CG1 sing N N 364
VAL CB CG2 sing N N 365
VAL CB HB sing N N 366
VAL CG1 HG11 sing N N 367
VAL CG1 HG12 sing N N 368
VAL CG1 HG13 sing N N 369
VAL CG2 HG21 sing N N 370
VAL CG2 HG22 sing N N 371
VAL CG2 HG23 sing N N 372
VAL OXT HXT sing N N 373
#
_em_image_processing.id 1
_em_image_processing.image_recording_id 1
_em_image_processing.details ?
#
_em_image_recording.details ?
_em_image_recording.id 1
_em_image_recording.avg_electron_dose_per_image 10
_em_image_recording.film_or_detector_model 'KODAK SO-163 FILM'
_em_image_recording.imaging_id 1
_em_image_recording.detector_mode ?
_em_image_recording.average_exposure_time ?
_em_image_recording.num_diffraction_images ?
_em_image_recording.num_grids_imaged ?
_em_image_recording.num_real_images ?
#
loop_
_em_software.id
_em_software.name
_em_software.version
_em_software.category
_em_software.details
_em_software.image_processing_id
_em_software.imaging_id
_em_software.fitting_id
1 EMfit ? 'MODEL FITTING' ? ? ? 1
2 'MRC IMAGE PROCESSING PACKAGE' ? 'PARTICLE SELECTION' ? 1 ? ?
3 SPIDER ? 'PARTICLE SELECTION' ? 1 ? ?
4 ? ? RECONSTRUCTION 'PYPFT, SIMPLEX Procedure' 1 ? ?
#
_em_specimen.experiment_id 1
_em_specimen.id 1
_em_specimen.concentration ?
_em_specimen.vitrification_applied YES
_em_specimen.staining_applied NO
_em_specimen.embedding_applied NO
_em_specimen.shadowing_applied NO
_em_specimen.details ?
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1DYL
#
_atom_sites.entry_id 1DYL
_atom_sites.fract_transf_matrix[1][1] 1.000000
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 1.000000
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 1.000000
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_