HEADER BLOOD CLOTTING 28-FEB-00 1DZG TITLE N135Q-S380C-ANTITHROMBIN-III COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTITHROMBIN-III; COMPND 3 CHAIN: I; COMPND 4 SYNONYM: ATIII, SERPIN C1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: INHIBITORY CONFORMATION; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ANTITHROMBIN-III; COMPND 10 CHAIN: L; COMPND 11 SYNONYM: ATIII, SERPIN C1; COMPND 12 OTHER_DETAILS: LATENT CONFORMATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETIDAE SP.; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 36483; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PMASTOP; SOURCE 8 OTHER_DETAILS: RECOMBINANT. BABY HAMSTER KIDNEY (BHK) CELL SOURCE 9 EXPRESSION; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 OTHER_DETAILS: PLASMA ALPHA ANTITHROMBIN-III KEYWDS BLOOD CLOTTING, SERPIN EXPDTA X-RAY DIFFRACTION AUTHOR A.J.MCCOY,J.A.HUNTINGTON,R.W.CARRELL REVDAT 6 06-NOV-24 1DZG 1 REMARK REVDAT 5 06-DEC-23 1DZG 1 HETSYN REVDAT 4 29-JUL-20 1DZG 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 01-JUN-11 1DZG 1 VERSN REVDAT 2 24-FEB-09 1DZG 1 VERSN REVDAT 1 26-MAY-00 1DZG 0 JRNL AUTH J.A.HUNTINGTON,A.J.MCCOY,K.J.BELZAR,X.Y.PEI,P.G.W.GETTINS, JRNL AUTH 2 R.W.CARRELL JRNL TITL THE CONFORMATIONAL ACTIVATION OF ANTITHROMBIN. A 2. 85-A JRNL TITL 2 STRUCTURE OF A FLUORESCEIN DERIVATIVE REVEALS AN JRNL TITL 3 ELECTROSTATIC LINK BETWEEN THE HINGE AND HEPARIN BINDING JRNL TITL 4 REGIONS. JRNL REF J.BIOL.CHEM. V. 275 15377 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10809774 JRNL DOI 10.1074/JBC.275.20.15377 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 27983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : SAME AS 2ANT REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6451 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 138 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 6.827 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.428 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.431 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.250 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.008 ; 0.010 REMARK 3 ANGLE DISTANCE (A) : 0.021 ; 0.015 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.020 ; 0.020 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.007 ; 0.015 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.201 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.153 ; 0.150 REMARK 3 MULTIPLE TORSION (A) : 0.203 ; 0.150 REMARK 3 H-BOND (X...Y) (A) : 0.127 ; 0.150 REMARK 3 H-BOND (X-H...Y) (A) : 0.205 ; 0.150 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 4.100 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 21.800; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 24.500; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.473 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.349 ; 5.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.664 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.892 ; 6.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT CORRECTION CALCULATED WITH REMARK 3 CNS REMARK 4 REMARK 4 1DZG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-FEB-00. REMARK 100 THE DEPOSITION ID IS D_1290004646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.88 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98714 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2ANT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5MG/ML 1:1 MIX OF INHIBITORY: LATENT REMARK 280 ANTITHROMBIN-III, 10.5% PEG 4000, 65 MM NACACODYLATE, PH 6.5, PH REMARK 280 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.77000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CHAIN I: REMARK 400 HAS ENGINEERED MUTATIONS N135Q AND S380C REMARK 400 N135Q MUTATION TO REMOVE GLYCOSYLATION SITE REMARK 400 S380C MUTATION FOR FLUORESCEIN ATTACHMENT SITE REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS I 1 REMARK 465 GLY I 2 REMARK 465 SER I 3 REMARK 465 ALA I 30 REMARK 465 THR I 31 REMARK 465 GLU I 32 REMARK 465 ASP I 33 REMARK 465 GLU I 34 REMARK 465 GLY I 35 REMARK 465 LYS I 432 REMARK 465 HIS L 1 REMARK 465 GLY L 2 REMARK 465 SER L 3 REMARK 465 PRO L 4 REMARK 465 VAL L 5 REMARK 465 ASP L 6 REMARK 465 GLU L 27 REMARK 465 LYS L 28 REMARK 465 LYS L 29 REMARK 465 ALA L 30 REMARK 465 THR L 31 REMARK 465 GLU L 32 REMARK 465 ASP L 33 REMARK 465 GLU L 34 REMARK 465 GLY L 35 REMARK 465 SER L 36 REMARK 465 GLU L 37 REMARK 465 GLN L 38 REMARK 465 LYS L 39 REMARK 465 ILE L 40 REMARK 465 PRO L 41 REMARK 465 VAL L 431 REMARK 465 LYS L 432 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO I 4 CG CD REMARK 470 MET I 20 CG SD CE REMARK 470 GLU I 27 CG CD OE1 OE2 REMARK 470 LYS I 28 CG CD CE NZ REMARK 470 LYS I 29 CB CG CD CE NZ REMARK 470 ARG I 46 CG CD NE CZ NH1 NH2 REMARK 470 ARG I 47 CG CD NE CZ NH1 NH2 REMARK 470 LYS I 53 CG CD CE NZ REMARK 470 GLU I 113 CG CD OE1 OE2 REMARK 470 LYS I 114 CG CD CE NZ REMARK 470 ASP I 117 CG OD1 OD2 REMARK 470 LYS I 133 CG CD CE NZ REMARK 470 LYS I 136 CG CD CE NZ REMARK 470 LYS I 139 CG CD CE NZ REMARK 470 LYS I 150 CG CD CE NZ REMARK 470 GLU I 156 CG CD OE1 OE2 REMARK 470 GLN I 181 CG CD OE1 NE2 REMARK 470 LYS I 188 CG CD CE NZ REMARK 470 GLU I 205 CG CD OE1 OE2 REMARK 470 GLU I 306 CG CD OE1 OE2 REMARK 470 GLU I 326 CG CD OE1 OE2 REMARK 470 LYS I 332 CG CD CE NZ REMARK 470 GLN I 336 CG CD OE1 NE2 REMARK 470 GLU I 347 CG CD OE1 OE2 REMARK 470 ARG I 359 CG CD NE CZ NH1 NH2 REMARK 470 ASP I 361 CG OD1 OD2 REMARK 470 LYS L 11 CG CD CE NZ REMARK 470 ARG L 24 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU L 42 CG CD OE1 OE2 REMARK 470 ARG L 46 CG CD NE CZ NH1 NH2 REMARK 470 GLU L 113 CG CD OE1 OE2 REMARK 470 LYS L 114 CG CD CE NZ REMARK 470 ARG L 132 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 176 CG CD CE NZ REMARK 470 GLU L 177 CG CD OE1 OE2 REMARK 470 ARG L 183 CG CD NE CZ NH1 NH2 REMARK 470 GLU L 205 CG CD OE1 OE2 REMARK 470 LYS L 228 CG CD CE NZ REMARK 470 LYS L 287 CG CD CE NZ REMARK 470 GLU L 289 CB CG CD OE1 OE2 REMARK 470 LYS L 297 CG CD CE NZ REMARK 470 ARG L 393 CG CD NE CZ NH1 NH2 REMARK 470 ARG L 399 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 403 CG CD CE NZ REMARK 470 ARG L 406 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR I 260 CA - CB - CG ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG I 324 CD - NE - CZ ANGL. DEV. = 8.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA I 10 130.98 -27.42 REMARK 500 ALA I 43 35.12 74.71 REMARK 500 ASN I 73 22.70 -70.50 REMARK 500 ALA I 94 163.09 -44.05 REMARK 500 ASN I 96 -111.81 56.93 REMARK 500 GLU I 113 65.61 37.31 REMARK 500 LYS I 133 117.91 -13.07 REMARK 500 LYS I 136 -149.90 -121.10 REMARK 500 LEU I 146 78.31 -116.44 REMARK 500 GLN I 159 -73.55 -45.53 REMARK 500 ASP I 160 -66.67 -28.48 REMARK 500 LEU I 164 -80.98 -52.96 REMARK 500 LEU I 170 66.77 -107.53 REMARK 500 ALA I 179 -71.05 -50.24 REMARK 500 THR I 194 32.95 -90.48 REMARK 500 GLU I 195 52.47 32.69 REMARK 500 ASP I 200 50.21 -96.85 REMARK 500 PRO I 203 -108.65 -85.45 REMARK 500 ALA I 206 -152.93 -137.31 REMARK 500 ILE I 207 105.57 -54.43 REMARK 500 ASN I 208 -140.43 -110.53 REMARK 500 LEU I 210 51.79 -103.28 REMARK 500 VAL I 212 -72.54 -93.75 REMARK 500 THR I 218 126.19 176.08 REMARK 500 SER I 227 70.59 -116.92 REMARK 500 ALA I 264 129.20 -27.39 REMARK 500 ASP I 277 2.31 83.77 REMARK 500 LYS I 332 -78.42 -13.66 REMARK 500 SER I 349 88.13 -61.51 REMARK 500 GLU I 357 -78.01 -57.68 REMARK 500 LEU I 362 93.15 -8.88 REMARK 500 ASN I 376 -147.75 -124.32 REMARK 500 GLU I 381 52.10 78.77 REMARK 500 ALA I 384 166.22 176.50 REMARK 500 ASN I 398 38.17 -94.48 REMARK 500 PRO I 407 135.80 -34.99 REMARK 500 ASN I 428 92.09 -170.76 REMARK 500 CYS I 430 151.58 -43.93 REMARK 500 PRO L 12 -73.69 -29.99 REMARK 500 PRO L 19 -166.85 -77.16 REMARK 500 ASN L 96 -118.42 60.96 REMARK 500 PHE L 106 31.80 -98.94 REMARK 500 LYS L 107 45.58 29.47 REMARK 500 GLU L 113 134.77 -29.75 REMARK 500 LYS L 136 72.01 -102.51 REMARK 500 ASP L 200 33.11 -87.75 REMARK 500 VAL L 201 -72.29 -36.57 REMARK 500 ASN L 208 -153.60 -100.08 REMARK 500 ARG L 262 78.81 -110.84 REMARK 500 LYS L 332 -71.30 -43.72 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR L 300 -11.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ANT RELATED DB: PDB REMARK 900 RELATED ID: 1ATH RELATED DB: PDB REMARK 900 RELATED ID: 2ANT RELATED DB: PDB REMARK 900 RELATED ID: 1BR8 RELATED DB: PDB REMARK 900 RELATED ID: 1DZH RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 ANT3_HUMAN RESIDUE NUMBERING IN SWS IS FROM START REMARK 999 OF ANTITHROMBIN-III LEADER SEQUENCE. REMARK 999 STRUCTURE RESIDUE NUMBERING IS FROM START OF REMARK 999 MATURE ANTITHROMBIN-III REMARK 999 REMARK 999 RESIDUES NOT MODELLED HAD POOR ELECTRON DENSITY DBREF 1DZG I 1 432 UNP P01008 ANT3_HUMAN 33 464 DBREF 1DZG L 1 432 UNP P01008 ANT3_HUMAN 33 464 SEQADV 1DZG GLN I 135 UNP P01008 ASN 135 ENGINEERED MUTATION SEQADV 1DZG CYS I 380 UNP P01008 SER 380 ENGINEERED MUTATION SEQRES 1 I 432 HIS GLY SER PRO VAL ASP ILE CYS THR ALA LYS PRO ARG SEQRES 2 I 432 ASP ILE PRO MET ASN PRO MET CYS ILE TYR ARG SER PRO SEQRES 3 I 432 GLU LYS LYS ALA THR GLU ASP GLU GLY SER GLU GLN LYS SEQRES 4 I 432 ILE PRO GLU ALA THR ASN ARG ARG VAL TRP GLU LEU SER SEQRES 5 I 432 LYS ALA ASN SER ARG PHE ALA THR THR PHE TYR GLN HIS SEQRES 6 I 432 LEU ALA ASP SER LYS ASN ASP ASN ASP ASN ILE PHE LEU SEQRES 7 I 432 SER PRO LEU SER ILE SER THR ALA PHE ALA MET THR LYS SEQRES 8 I 432 LEU GLY ALA CYS ASN ASP THR LEU GLN GLN LEU MET GLU SEQRES 9 I 432 VAL PHE LYS PHE ASP THR ILE SER GLU LYS THR SER ASP SEQRES 10 I 432 GLN ILE HIS PHE PHE PHE ALA LYS LEU ASN CYS ARG LEU SEQRES 11 I 432 TYR ARG LYS ALA GLN LYS SER SER LYS LEU VAL SER ALA SEQRES 12 I 432 ASN ARG LEU PHE GLY ASP LYS SER LEU THR PHE ASN GLU SEQRES 13 I 432 THR TYR GLN ASP ILE SER GLU LEU VAL TYR GLY ALA LYS SEQRES 14 I 432 LEU GLN PRO LEU ASP PHE LYS GLU ASN ALA GLU GLN SER SEQRES 15 I 432 ARG ALA ALA ILE ASN LYS TRP VAL SER ASN LYS THR GLU SEQRES 16 I 432 GLY ARG ILE THR ASP VAL ILE PRO SER GLU ALA ILE ASN SEQRES 17 I 432 GLU LEU THR VAL LEU VAL LEU VAL ASN THR ILE TYR PHE SEQRES 18 I 432 LYS GLY LEU TRP LYS SER LYS PHE SER PRO GLU ASN THR SEQRES 19 I 432 ARG LYS GLU LEU PHE TYR LYS ALA ASP GLY GLU SER CYS SEQRES 20 I 432 SER ALA SER MET MET TYR GLN GLU GLY LYS PHE ARG TYR SEQRES 21 I 432 ARG ARG VAL ALA GLU GLY THR GLN VAL LEU GLU LEU PRO SEQRES 22 I 432 PHE LYS GLY ASP ASP ILE THR MET VAL LEU ILE LEU PRO SEQRES 23 I 432 LYS PRO GLU LYS SER LEU ALA LYS VAL GLU LYS GLU LEU SEQRES 24 I 432 THR PRO GLU VAL LEU GLN GLU TRP LEU ASP GLU LEU GLU SEQRES 25 I 432 GLU MET MET LEU VAL VAL HIS MET PRO ARG PHE ARG ILE SEQRES 26 I 432 GLU ASP GLY PHE SER LEU LYS GLU GLN LEU GLN ASP MET SEQRES 27 I 432 GLY LEU VAL ASP LEU PHE SER PRO GLU LYS SER LYS LEU SEQRES 28 I 432 PRO GLY ILE VAL ALA GLU GLY ARG ASP ASP LEU TYR VAL SEQRES 29 I 432 SER ASP ALA PHE HIS LYS ALA PHE LEU GLU VAL ASN GLU SEQRES 30 I 432 GLU GLY CYS GLU ALA ALA ALA SER THR ALA VAL VAL ILE SEQRES 31 I 432 ALA GLY ARG SER LEU ASN PRO ASN ARG VAL THR PHE LYS SEQRES 32 I 432 ALA ASN ARG PRO PHE LEU VAL PHE ILE ARG GLU VAL PRO SEQRES 33 I 432 LEU ASN THR ILE ILE PHE MET GLY ARG VAL ALA ASN PRO SEQRES 34 I 432 CYS VAL LYS SEQRES 1 L 432 HIS GLY SER PRO VAL ASP ILE CYS THR ALA LYS PRO ARG SEQRES 2 L 432 ASP ILE PRO MET ASN PRO MET CYS ILE TYR ARG SER PRO SEQRES 3 L 432 GLU LYS LYS ALA THR GLU ASP GLU GLY SER GLU GLN LYS SEQRES 4 L 432 ILE PRO GLU ALA THR ASN ARG ARG VAL TRP GLU LEU SER SEQRES 5 L 432 LYS ALA ASN SER ARG PHE ALA THR THR PHE TYR GLN HIS SEQRES 6 L 432 LEU ALA ASP SER LYS ASN ASP ASN ASP ASN ILE PHE LEU SEQRES 7 L 432 SER PRO LEU SER ILE SER THR ALA PHE ALA MET THR LYS SEQRES 8 L 432 LEU GLY ALA CYS ASN ASP THR LEU GLN GLN LEU MET GLU SEQRES 9 L 432 VAL PHE LYS PHE ASP THR ILE SER GLU LYS THR SER ASP SEQRES 10 L 432 GLN ILE HIS PHE PHE PHE ALA LYS LEU ASN CYS ARG LEU SEQRES 11 L 432 TYR ARG LYS ALA ASN LYS SER SER LYS LEU VAL SER ALA SEQRES 12 L 432 ASN ARG LEU PHE GLY ASP LYS SER LEU THR PHE ASN GLU SEQRES 13 L 432 THR TYR GLN ASP ILE SER GLU LEU VAL TYR GLY ALA LYS SEQRES 14 L 432 LEU GLN PRO LEU ASP PHE LYS GLU ASN ALA GLU GLN SER SEQRES 15 L 432 ARG ALA ALA ILE ASN LYS TRP VAL SER ASN LYS THR GLU SEQRES 16 L 432 GLY ARG ILE THR ASP VAL ILE PRO SER GLU ALA ILE ASN SEQRES 17 L 432 GLU LEU THR VAL LEU VAL LEU VAL ASN THR ILE TYR PHE SEQRES 18 L 432 LYS GLY LEU TRP LYS SER LYS PHE SER PRO GLU ASN THR SEQRES 19 L 432 ARG LYS GLU LEU PHE TYR LYS ALA ASP GLY GLU SER CYS SEQRES 20 L 432 SER ALA SER MET MET TYR GLN GLU GLY LYS PHE ARG TYR SEQRES 21 L 432 ARG ARG VAL ALA GLU GLY THR GLN VAL LEU GLU LEU PRO SEQRES 22 L 432 PHE LYS GLY ASP ASP ILE THR MET VAL LEU ILE LEU PRO SEQRES 23 L 432 LYS PRO GLU LYS SER LEU ALA LYS VAL GLU LYS GLU LEU SEQRES 24 L 432 THR PRO GLU VAL LEU GLN GLU TRP LEU ASP GLU LEU GLU SEQRES 25 L 432 GLU MET MET LEU VAL VAL HIS MET PRO ARG PHE ARG ILE SEQRES 26 L 432 GLU ASP GLY PHE SER LEU LYS GLU GLN LEU GLN ASP MET SEQRES 27 L 432 GLY LEU VAL ASP LEU PHE SER PRO GLU LYS SER LYS LEU SEQRES 28 L 432 PRO GLY ILE VAL ALA GLU GLY ARG ASP ASP LEU TYR VAL SEQRES 29 L 432 SER ASP ALA PHE HIS LYS ALA PHE LEU GLU VAL ASN GLU SEQRES 30 L 432 GLU GLY SER GLU ALA ALA ALA SER THR ALA VAL VAL ILE SEQRES 31 L 432 ALA GLY ARG SER LEU ASN PRO ASN ARG VAL THR PHE LYS SEQRES 32 L 432 ALA ASN ARG PRO PHE LEU VAL PHE ILE ARG GLU VAL PRO SEQRES 33 L 432 LEU ASN THR ILE ILE PHE MET GLY ARG VAL ALA ASN PRO SEQRES 34 L 432 CYS VAL LYS MODRES 1DZG ASN I 96 ASN GLYCOSYLATION SITE MODRES 1DZG ASN I 155 ASN GLYCOSYLATION SITE MODRES 1DZG ASN I 192 ASN GLYCOSYLATION SITE MODRES 1DZG ASN L 96 ASN GLYCOSYLATION SITE MODRES 1DZG ASN L 155 ASN GLYCOSYLATION SITE MODRES 1DZG ASN L 192 ASN GLYCOSYLATION SITE HET NAG A 1 14 HET NAG A 2 14 HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET NAG I 801 14 HET NAG I 861 14 HET GOL I 901 6 HET NAG L 861 14 HET GOL L 901 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 9(C8 H15 N O6) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 11 HOH *4(H2 O) HELIX 1 13 LYS I 11 ILE I 15 5 5 HELIX 2 14 ASN I 45 LYS I 70 1 26 HELIX 3 15 SER I 79 ALA I 94 1 16 HELIX 4 16 CYS I 95 PHE I 106 1 12 HELIX 5 17 LYS I 107 ILE I 111 5 5 HELIX 6 18 THR I 115 ARG I 132 1 18 HELIX 7 19 ASN I 155 GLY I 167 1 13 HELIX 8 20 ALA I 179 GLN I 181 5 3 HELIX 9 21 SER I 182 THR I 194 1 13 HELIX 10 22 SER I 230 THR I 234 5 5 HELIX 11 23 SER I 291 LEU I 299 1 9 HELIX 12 24 THR I 300 LEU I 311 1 12 HELIX 13 25 LEU I 331 GLY I 339 1 9 HELIX 14 1 ALA L 43 SER L 69 1 27 HELIX 15 2 SER L 79 LEU L 92 1 14 HELIX 16 3 CYS L 95 PHE L 106 1 12 HELIX 17 4 LYS L 107 ILE L 111 5 5 HELIX 18 5 GLN L 118 ARG L 132 1 15 HELIX 19 6 ASN L 155 TYR L 166 1 12 HELIX 20 7 ASN L 178 THR L 194 1 17 HELIX 21 8 SER L 230 THR L 234 5 5 HELIX 22 9 LEU L 292 LEU L 299 1 8 HELIX 23 10 GLU L 302 GLU L 310 1 9 HELIX 24 11 LEU L 331 GLY L 339 1 9 HELIX 25 12 VAL L 341 SER L 345 5 5 SHEET 1 A 7 ILE L 76 LEU L 78 0 SHEET 2 A 7 THR L 419 VAL L 426 -1 N ARG L 425 O ILE L 76 SHEET 3 A 7 PHE L 408 GLU L 414 -1 N GLU L 414 O THR L 419 SHEET 4 A 7 ILE L 279 LEU L 285 -1 N ILE L 284 O LEU L 409 SHEET 5 A 7 THR L 267 PRO L 273 -1 N LEU L 272 O MET L 281 SHEET 6 A 7 GLN L 254 VAL L 263 -1 N VAL L 263 O THR L 267 SHEET 7 A 7 GLU L 312 VAL L 318 -1 N VAL L 318 O GLN L 254 SHEET 1 B 5 LYS L 139 GLY L 148 0 SHEET 2 B 5 LEU L 213 LEU L 224 -1 N LYS L 222 O LYS L 139 SHEET 3 B 5 GLY L 379 ILE L 390 -1 N ILE L 390 O LEU L 213 SHEET 4 B 5 VAL L 364 VAL L 375 -1 N GLU L 374 O GLU L 381 SHEET 5 B 5 PHE L 323 SER L 330 -1 N PHE L 329 O HIS L 369 SHEET 1 C 2 ARG L 235 LYS L 241 0 SHEET 2 C 2 GLU L 245 MET L 251 -1 N MET L 251 O ARG L 235 SHEET 1 D 7 ILE I 76 LEU I 78 0 SHEET 2 D 7 THR I 419 VAL I 426 -1 N ARG I 425 O ILE I 76 SHEET 3 D 7 PHE I 408 GLU I 414 -1 N GLU I 414 O THR I 419 SHEET 4 D 7 ILE I 279 LEU I 285 -1 N ILE I 284 O LEU I 409 SHEET 5 D 7 THR I 267 PRO I 273 -1 N LEU I 272 O MET I 281 SHEET 6 D 7 MET I 251 VAL I 263 -1 N VAL I 263 O THR I 267 SHEET 7 D 7 GLU I 312 PRO I 321 -1 N MET I 320 O MET I 252 SHEET 1 E 2 LYS I 139 SER I 142 0 SHEET 2 E 2 ILE I 219 LYS I 222 -1 N LYS I 222 O LYS I 139 SHEET 1 F 4 ARG I 145 PHE I 147 0 SHEET 2 F 4 VAL I 214 ASN I 217 -1 N VAL I 216 O ARG I 145 SHEET 3 F 4 ALA I 367 VAL I 375 1 N PHE I 368 O LEU I 215 SHEET 4 F 4 PHE I 323 SER I 330 -1 N PHE I 329 O HIS I 369 SHEET 1 G 2 LEU I 152 PHE I 154 0 SHEET 2 G 2 ILE I 354 ALA I 356 -1 N VAL I 355 O THR I 153 SHEET 1 H 2 ARG I 235 TYR I 240 0 SHEET 2 H 2 SER I 246 MET I 251 -1 N MET I 251 O ARG I 235 SSBOND 1 CYS I 8 CYS I 128 1555 1555 2.03 SSBOND 2 CYS I 21 CYS I 95 1555 1555 2.03 SSBOND 3 CYS I 247 CYS I 430 1555 1555 2.03 SSBOND 4 CYS L 8 CYS L 128 1555 1555 2.04 SSBOND 5 CYS L 21 CYS L 95 1555 1555 2.00 SSBOND 6 CYS L 247 CYS L 430 1555 1555 2.02 LINK ND2 ASN I 96 C1 NAG I 801 1555 1555 1.37 LINK ND2 ASN I 155 C1 NAG A 1 1555 1555 1.38 LINK ND2 ASN I 192 C1 NAG I 861 1555 1555 1.37 LINK ND2 ASN L 96 C1 NAG B 1 1555 1555 1.38 LINK ND2 ASN L 155 C1 NAG C 1 1555 1555 1.37 LINK ND2 ASN L 192 C1 NAG L 861 1555 1555 1.37 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.41 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.39 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 CRYST1 68.610 99.540 88.690 90.00 104.79 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014575 0.000000 0.003848 0.00000 SCALE2 0.000000 0.010046 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011662 0.00000 CONECT 34 910 CONECT 130 645 CONECT 645 130 CONECT 653 6538 CONECT 910 34 CONECT 1114 6454 CONECT 1402 6552 CONECT 1840 3264 CONECT 3264 1840 CONECT 3286 4101 CONECT 3381 3833 CONECT 3833 3381 CONECT 3841 6482 CONECT 4101 3286 CONECT 4314 6510 CONECT 4600 6572 CONECT 5034 6452 CONECT 6452 5034 CONECT 6454 1114 6455 6465 CONECT 6455 6454 6456 6462 CONECT 6456 6455 6457 6463 CONECT 6457 6456 6458 6464 CONECT 6458 6457 6459 6465 CONECT 6459 6458 6466 CONECT 6460 6461 6462 6467 CONECT 6461 6460 CONECT 6462 6455 6460 CONECT 6463 6456 CONECT 6464 6457 6468 CONECT 6465 6454 6458 CONECT 6466 6459 CONECT 6467 6460 CONECT 6468 6464 6469 6479 CONECT 6469 6468 6470 6476 CONECT 6470 6469 6471 6477 CONECT 6471 6470 6472 6478 CONECT 6472 6471 6473 6479 CONECT 6473 6472 6480 CONECT 6474 6475 6476 6481 CONECT 6475 6474 CONECT 6476 6469 6474 CONECT 6477 6470 CONECT 6478 6471 CONECT 6479 6468 6472 CONECT 6480 6473 CONECT 6481 6474 CONECT 6482 3841 6483 6493 CONECT 6483 6482 6484 6490 CONECT 6484 6483 6485 6491 CONECT 6485 6484 6486 6492 CONECT 6486 6485 6487 6493 CONECT 6487 6486 6494 CONECT 6488 6489 6490 6495 CONECT 6489 6488 CONECT 6490 6483 6488 CONECT 6491 6484 CONECT 6492 6485 6496 CONECT 6493 6482 6486 CONECT 6494 6487 CONECT 6495 6488 CONECT 6496 6492 6497 6507 CONECT 6497 6496 6498 6504 CONECT 6498 6497 6499 6505 CONECT 6499 6498 6500 6506 CONECT 6500 6499 6501 6507 CONECT 6501 6500 6508 CONECT 6502 6503 6504 6509 CONECT 6503 6502 CONECT 6504 6497 6502 CONECT 6505 6498 CONECT 6506 6499 CONECT 6507 6496 6500 CONECT 6508 6501 CONECT 6509 6502 CONECT 6510 4314 6511 6521 CONECT 6511 6510 6512 6518 CONECT 6512 6511 6513 6519 CONECT 6513 6512 6514 6520 CONECT 6514 6513 6515 6521 CONECT 6515 6514 6522 CONECT 6516 6517 6518 6523 CONECT 6517 6516 CONECT 6518 6511 6516 CONECT 6519 6512 CONECT 6520 6513 6524 CONECT 6521 6510 6514 CONECT 6522 6515 CONECT 6523 6516 CONECT 6524 6520 6525 6535 CONECT 6525 6524 6526 6532 CONECT 6526 6525 6527 6533 CONECT 6527 6526 6528 6534 CONECT 6528 6527 6529 6535 CONECT 6529 6528 6536 CONECT 6530 6531 6532 6537 CONECT 6531 6530 CONECT 6532 6525 6530 CONECT 6533 6526 CONECT 6534 6527 CONECT 6535 6524 6528 CONECT 6536 6529 CONECT 6537 6530 CONECT 6538 653 6539 6549 CONECT 6539 6538 6540 6546 CONECT 6540 6539 6541 6547 CONECT 6541 6540 6542 6548 CONECT 6542 6541 6543 6549 CONECT 6543 6542 6550 CONECT 6544 6545 6546 6551 CONECT 6545 6544 CONECT 6546 6539 6544 CONECT 6547 6540 CONECT 6548 6541 CONECT 6549 6538 6542 CONECT 6550 6543 CONECT 6551 6544 CONECT 6552 1402 6553 6563 CONECT 6553 6552 6554 6560 CONECT 6554 6553 6555 6561 CONECT 6555 6554 6556 6562 CONECT 6556 6555 6557 6563 CONECT 6557 6556 6564 CONECT 6558 6559 6560 6565 CONECT 6559 6558 CONECT 6560 6553 6558 CONECT 6561 6554 CONECT 6562 6555 CONECT 6563 6552 6556 CONECT 6564 6557 CONECT 6565 6558 CONECT 6566 6567 6568 CONECT 6567 6566 CONECT 6568 6566 6569 6570 CONECT 6569 6568 CONECT 6570 6568 6571 CONECT 6571 6570 CONECT 6572 4600 6573 6583 CONECT 6573 6572 6574 6580 CONECT 6574 6573 6575 6581 CONECT 6575 6574 6576 6582 CONECT 6576 6575 6577 6583 CONECT 6577 6576 6584 CONECT 6578 6579 6580 6585 CONECT 6579 6578 CONECT 6580 6573 6578 CONECT 6581 6574 CONECT 6582 6575 CONECT 6583 6572 6576 CONECT 6584 6577 CONECT 6585 6578 CONECT 6586 6587 6588 CONECT 6587 6586 CONECT 6588 6586 6589 6590 CONECT 6589 6588 CONECT 6590 6588 6591 CONECT 6591 6590 MASTER 408 0 11 25 31 0 0 6 6593 2 156 68 END