HEADER ODORANT BINDING PROTEIN 09-MAR-00 1E02 TITLE PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH UNDECANAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ODORANT-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PIG OBP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 ORGAN: NOSE; SOURCE 6 TISSUE: OLFACTORY EPITHELIUM KEYWDS ODORANT BINDING PROTEIN, LIPOCALINS EXPDTA X-RAY DIFFRACTION AUTHOR F.VINCENT,S.SPINELLI,C.CAMBILLAU,M.TEGONI REVDAT 3 06-NOV-24 1E02 1 REMARK REVDAT 2 24-FEB-09 1E02 1 VERSN REVDAT 1 06-DEC-00 1E02 0 JRNL AUTH F.VINCENT,S.SPINELLI,R.RAMONI,S.GROLLI,P.PELOSI,C.CAMBILLAU, JRNL AUTH 2 M.TEGONI JRNL TITL COMPLEXES OF PORCINE ODORANT BINDING PROTEIN WITH ODORANT JRNL TITL 2 MOLECULES BELONGING TO DIFFERENT CHEMICAL CLASSES JRNL REF J.MOL.BIOL. V. 300 127 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10864504 JRNL DOI 10.1006/JMBI.2000.3820 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.843 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 100.000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 17404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 870 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3048 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE : 0.2050 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2340 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 202 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.11000 REMARK 3 B22 (A**2) : 3.20000 REMARK 3 B33 (A**2) : 2.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.37 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.630 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 29.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.850 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.920 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.580 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.380 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.650 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : XDICT_UND.PAR REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PAR_SE.ODOR REMARK 3 TOPOLOGY FILE 2 : XDICT_UND.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: N-TERMINUS FROM RESIDUE 1 TO 8, IN REMARK 3 SUBUNIT A AND 1 - 10 IN SUBUNIT B, ARE NOT VISIBLE IN THE REMARK 3 ELECTRON DENSITY, DUE TO FLEXIBILITY. ALTERNATE POSITIONS ARE REMARK 3 PRESENT FOR SIDE CHAIN OF RESIDUES 19A, 39A, 114A. THE ATOMS REMARK 3 CONCERNED HAVE OCCUPANCY BETWEEN 0.0 AND 1.0 AND A SEGID AC1 AND REMARK 3 AC2 OFTEN, OCCUPANCY VALUES LOWER THAN 1.0 APPEARED TO JUSTIFY REMARK 3 BETTER THE ELECTRON DENSITY. FOR THIS REASON WE HAVE KEPT THIS REMARK 3 LOW OCCUPANCY FOR SEVERAL SIDE CHAIN ATOMS. REMARK 4 REMARK 4 1E02 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAR-00. REMARK 100 THE DEPOSITION ID IS D_1290004737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-97 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LURE REMARK 200 BEAMLINE : DW32 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30761 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.17000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: X-PLOR 3.843 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, AND 5% REMARK 280 ISOPROPANOL, PH 7.80 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.88950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.25350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.95700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.25350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.88950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.95700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 GLU A 2 REMARK 465 PRO A 3 REMARK 465 GLN A 4 REMARK 465 PRO A 5 REMARK 465 GLU A 6 REMARK 465 GLN A 7 REMARK 465 ASP A 8 REMARK 465 GLN B 1 REMARK 465 GLU B 2 REMARK 465 PRO B 3 REMARK 465 GLN B 4 REMARK 465 PRO B 5 REMARK 465 GLU B 6 REMARK 465 GLN B 7 REMARK 465 ASP B 8 REMARK 465 PRO B 9 REMARK 465 PHE B 10 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 46 OD2 REMARK 480 LYS A 47 CB CG CD CE NZ REMARK 480 GLU A 48 CG CD OE1 OE2 REMARK 480 GLU A 74 CB REMARK 480 ASN A 76 CB OD1 REMARK 480 LYS A 87 CD CE NZ REMARK 480 LYS B 15 CG CD CE NZ REMARK 480 GLU B 27 CG CD OE1 OE2 REMARK 480 LYS B 28 CD CE REMARK 480 ASN B 32 ND2 REMARK 480 LYS B 47 CG CD CE NZ REMARK 480 ILE B 62 CG1 CG2 CD1 REMARK 480 ASP B 110 CG OD1 OD2 REMARK 480 ASP B 126 CG OD1 OD2 REMARK 480 LEU B 129 CD1 REMARK 480 GLU B 151 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 47 O HOH B 2024 0.81 REMARK 500 CE LYS B 47 O HOH B 2024 0.90 REMARK 500 CG GLU B 11 O HOH B 2001 1.50 REMARK 500 CD GLU B 11 O HOH B 2001 1.71 REMARK 500 O ASP B 110 O HOH B 2060 1.84 REMARK 500 CD LYS B 47 O HOH B 2024 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 121 C THR A 122 N -0.346 REMARK 500 GLU B 11 C LEU B 12 N -0.148 REMARK 500 TRP B 16 CE2 TRP B 16 CD2 -0.120 REMARK 500 TYR B 20 N TYR B 20 CA -0.149 REMARK 500 TYR B 20 C TYR B 20 O -0.114 REMARK 500 ARG B 40 CZ ARG B 40 NH2 -0.098 REMARK 500 SER B 41 CB SER B 41 OG -0.119 REMARK 500 PHE B 56 CZ PHE B 56 CE2 0.114 REMARK 500 GLU B 59 CD GLU B 59 OE2 -0.066 REMARK 500 GLU B 64 CD GLU B 64 OE1 -0.086 REMARK 500 GLU B 64 CD GLU B 64 OE2 0.083 REMARK 500 GLU B 64 C GLU B 64 O 0.152 REMARK 500 GLU B 65 CG GLU B 65 CD -0.144 REMARK 500 SER B 67 CB SER B 67 OG -0.091 REMARK 500 GLU B 74 CD GLU B 74 OE1 0.079 REMARK 500 TYR B 78 CE1 TYR B 78 CZ 0.086 REMARK 500 TYR B 82 CB TYR B 82 CG 0.093 REMARK 500 TYR B 82 CE2 TYR B 82 CD2 -0.114 REMARK 500 GLY B 84 C GLY B 84 O -0.125 REMARK 500 TYR B 92 CG TYR B 92 CD1 0.121 REMARK 500 SER B 94 CA SER B 94 CB -0.113 REMARK 500 SER B 94 CB SER B 94 OG 0.099 REMARK 500 LEU B 98 C LEU B 98 O -0.116 REMARK 500 ASP B 106 CB ASP B 106 CG 0.138 REMARK 500 GLU B 107 CB GLU B 107 CG -0.128 REMARK 500 GLU B 107 CD GLU B 107 OE2 0.107 REMARK 500 ILE B 113 C ILE B 113 O -0.125 REMARK 500 GLY B 116 C GLY B 116 O -0.130 REMARK 500 GLY B 121 C THR B 122 N -0.186 REMARK 500 THR B 136 CB THR B 136 OG1 -0.127 REMARK 500 PRO B 142 CD PRO B 142 N 0.119 REMARK 500 GLU B 143 N GLU B 143 CA -0.184 REMARK 500 GLU B 143 CG GLU B 143 CD 0.104 REMARK 500 ASN B 145 C ASN B 145 O -0.117 REMARK 500 CYS B 155 CB CYS B 155 SG -0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 122 CA - C - N ANGL. DEV. = -13.7 DEGREES REMARK 500 THR A 122 O - C - N ANGL. DEV. = 12.8 DEGREES REMARK 500 ASP A 123 N - CA - CB ANGL. DEV. = -11.9 DEGREES REMARK 500 TYR B 20 O - C - N ANGL. DEV. = -10.4 DEGREES REMARK 500 THR B 122 C - N - CA ANGL. DEV. = 23.3 DEGREES REMARK 500 THR B 122 CA - C - N ANGL. DEV. = -16.4 DEGREES REMARK 500 THR B 122 O - C - N ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 73 -156.49 -118.42 REMARK 500 TYR A 82 119.42 -179.33 REMARK 500 ASP A 106 -173.04 -68.44 REMARK 500 THR A 122 -146.36 63.29 REMARK 500 LEU B 12 31.21 -74.44 REMARK 500 SER B 19 -60.49 -97.21 REMARK 500 GLN B 73 -155.82 -123.27 REMARK 500 TYR B 82 110.42 -173.76 REMARK 500 SER B 94 -167.54 -127.87 REMARK 500 ASP B 106 -171.03 -64.97 REMARK 500 THR B 122 -121.03 -22.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 120 GLY B 121 148.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2033 DISTANCE = 6.04 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNA A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNA B 600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A3Y RELATED DB: PDB REMARK 900 ODORANT BINDING PROTEIN FROM NASAL MUCOSA OF PIG REMARK 900 RELATED ID: 1DZJ RELATED DB: PDB REMARK 900 PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH 2-AMINO-4-BUTYL-5- REMARK 900 PROPYLSELENAZOLE REMARK 900 RELATED ID: 1DZM RELATED DB: PDB REMARK 900 PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH BENZOIC ACID REMARK 900 PHENYLMETHYLESTER REMARK 900 RELATED ID: 1DZK RELATED DB: PDB REMARK 900 PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH (2-ISOBUTYL-3- REMARK 900 METOXYPYRAZINE) REMARK 900 RELATED ID: 1DZP RELATED DB: PDB REMARK 900 PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH DIPHENYLMETHANONE REMARK 900 RELATED ID: 1E00 RELATED DB: PDB REMARK 900 PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH 2,6-DIMETHYL-7-OCTEN- REMARK 900 2-OL REMARK 900 RELATED ID: 1E06 RELATED DB: PDB REMARK 900 PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH 5-METHYL-2-(1- REMARK 900 METHYLETHYL)PHENOL DBREF 1E02 A 1 157 UNP P81245 OBP_PIG 1 157 DBREF 1E02 B 1 157 UNP P81245 OBP_PIG 1 157 SEQRES 1 A 157 GLN GLU PRO GLN PRO GLU GLN ASP PRO PHE GLU LEU SER SEQRES 2 A 157 GLY LYS TRP ILE THR SER TYR ILE GLY SER SER ASP LEU SEQRES 3 A 157 GLU LYS ILE GLY GLU ASN ALA PRO PHE GLN VAL PHE MET SEQRES 4 A 157 ARG SER ILE GLU PHE ASP ASP LYS GLU SER LYS VAL TYR SEQRES 5 A 157 LEU ASN PHE PHE SER LYS GLU ASN GLY ILE CYS GLU GLU SEQRES 6 A 157 PHE SER LEU ILE GLY THR LYS GLN GLU GLY ASN THR TYR SEQRES 7 A 157 ASP VAL ASN TYR ALA GLY ASN ASN LYS PHE VAL VAL SER SEQRES 8 A 157 TYR ALA SER GLU THR ALA LEU ILE ILE SER ASN ILE ASN SEQRES 9 A 157 VAL ASP GLU GLU GLY ASP LYS THR ILE MET THR GLY LEU SEQRES 10 A 157 LEU GLY LYS GLY THR ASP ILE GLU ASP GLN ASP LEU GLU SEQRES 11 A 157 LYS PHE LYS GLU VAL THR ARG GLU ASN GLY ILE PRO GLU SEQRES 12 A 157 GLU ASN ILE VAL ASN ILE ILE GLU ARG ASP ASP CYS PRO SEQRES 13 A 157 ALA SEQRES 1 B 157 GLN GLU PRO GLN PRO GLU GLN ASP PRO PHE GLU LEU SER SEQRES 2 B 157 GLY LYS TRP ILE THR SER TYR ILE GLY SER SER ASP LEU SEQRES 3 B 157 GLU LYS ILE GLY GLU ASN ALA PRO PHE GLN VAL PHE MET SEQRES 4 B 157 ARG SER ILE GLU PHE ASP ASP LYS GLU SER LYS VAL TYR SEQRES 5 B 157 LEU ASN PHE PHE SER LYS GLU ASN GLY ILE CYS GLU GLU SEQRES 6 B 157 PHE SER LEU ILE GLY THR LYS GLN GLU GLY ASN THR TYR SEQRES 7 B 157 ASP VAL ASN TYR ALA GLY ASN ASN LYS PHE VAL VAL SER SEQRES 8 B 157 TYR ALA SER GLU THR ALA LEU ILE ILE SER ASN ILE ASN SEQRES 9 B 157 VAL ASP GLU GLU GLY ASP LYS THR ILE MET THR GLY LEU SEQRES 10 B 157 LEU GLY LYS GLY THR ASP ILE GLU ASP GLN ASP LEU GLU SEQRES 11 B 157 LYS PHE LYS GLU VAL THR ARG GLU ASN GLY ILE PRO GLU SEQRES 12 B 157 GLU ASN ILE VAL ASN ILE ILE GLU ARG ASP ASP CYS PRO SEQRES 13 B 157 ALA HET UNA A 600 12 HET UNA B 600 12 HETNAM UNA UNDECANAL FORMUL 3 UNA 2(C11 H22 O) FORMUL 5 HOH *202(H2 O) HELIX 1 1 ASP A 25 ILE A 29 5 5 HELIX 2 2 GLU A 125 ASN A 139 1 15 HELIX 3 3 PRO A 142 GLU A 144 5 3 HELIX 4 4 ASP B 25 ILE B 29 5 5 HELIX 5 5 GLU B 125 ASN B 139 1 15 HELIX 6 6 PRO B 142 GLU B 144 5 3 SHEET 1 A 3 ILE A 62 THR A 71 0 SHEET 2 A 3 LYS A 50 GLU A 59 -1 N GLU A 59 O ILE A 62 SHEET 3 A 3 VAL A 37 ASP A 45 -1 N ASP A 45 O LYS A 50 SHEET 1 B 4 TYR A 78 ASN A 81 0 SHEET 2 B 4 ASN A 85 ALA A 93 -1 N PHE A 88 O TYR A 78 SHEET 3 B 4 LEU A 98 VAL A 105 -1 N VAL A 105 O ASN A 85 SHEET 4 B 4 LYS A 111 MET A 114 -1 N MET A 114 O ASN A 102 SHEET 1 C 6 ILE B 146 ASN B 148 0 SHEET 2 C 6 ILE B 17 SER B 23 -1 N ILE B 21 O VAL B 147 SHEET 3 C 6 LYS B 111 GLY B 119 -1 N GLY B 119 O ILE B 17 SHEET 4 C 6 LEU B 98 VAL B 105 -1 N ASN B 104 O THR B 112 SHEET 5 C 6 ASN B 85 VAL B 89 -1 N VAL B 89 O SER B 101 SHEET 6 C 6 THR B 77 ASN B 81 -1 N VAL B 80 O ASN B 86 SHEET 1 D 3 ILE B 62 THR B 71 0 SHEET 2 D 3 LYS B 50 GLU B 59 -1 N GLU B 59 O ILE B 62 SHEET 3 D 3 PHE B 38 ASP B 45 -1 N ASP B 45 O LYS B 50 SSBOND 1 CYS A 63 CYS A 155 1555 1555 2.03 SSBOND 2 CYS B 63 CYS B 155 1555 1555 2.11 SITE 1 AC1 5 VAL A 37 MET A 39 ILE A 42 LEU A 53 SITE 2 AC1 5 LEU A 118 SITE 1 AC2 4 PHE B 35 PHE B 55 PHE B 88 ASN B 102 CRYST1 41.779 87.914 92.507 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023935 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011375 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010810 0.00000 MTRIX1 1 0.160580 -0.181290 0.970230 -23.94837 1 MTRIX2 1 -0.175400 0.962100 0.208800 18.53590 1 MTRIX3 1 -0.971310 -0.203710 0.122700 22.07671 1