HEADER HYDROLASE 27-MAR-00 1E0G TITLE LYSM DOMAIN FROM E.COLI MLTD COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE D; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LYSM DOMAIN; COMPND 5 EC: 4.2.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562 KEYWDS CELL WALL, HYDROLASE, GLYCOSIDASE, LIPOPROTEIN, OUTER MEMBRANE, KEYWDS 2 MULTIGENE FAMILY EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.BATEMAN,M.BYCROFT REVDAT 6 15-MAY-24 1E0G 1 REMARK REVDAT 5 25-SEP-19 1E0G 1 COMPND SOURCE REMARK DBREF REVDAT 4 24-FEB-09 1E0G 1 VERSN REVDAT 3 05-NOV-03 1E0G 1 SPRSDE REMARK REVDAT 2 06-JUN-02 1E0G 1 JRNL REVDAT 1 21-JUN-00 1E0G 0 SPRSDE 05-NOV-03 1E0G 1E01 JRNL AUTH A.BATEMAN,M.BYCROFT JRNL TITL THE STRUCTURE OF A LYSM DOMAIN FROM E.COLI MEMBRANE BOUND JRNL TITL 2 LYTIC MUREIN TRANSGLYCOSYLASE D (MLTD) JRNL REF J.MOL.BIOL. V. 299 1113 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10843862 JRNL DOI 10.1006/JMBI.2000.3778 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.K.BIRKELAND REMARK 1 TITL CLONING, MOLECULAR CHARACTERIZATION, AND EXPRESSION OF THE REMARK 1 TITL 2 GENES ENCODING THE LYTIC FUNCTIONS OF LACTOCOCCAL REMARK 1 TITL 3 BACTERIOPHAGE-PHI-LC3; A DUAL LYSIS SYSTEM OF MODULAR DESIGN REMARK 1 REF CAN.J.MICROBIOL. V. 40 658 1994 REMARK 1 REFN ISSN 0008-4166 REMARK 1 PMID 7922887 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SA FROM RANDOM COIL STARTING STRUCTURES REMARK 4 REMARK 4 1E0G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-00. REMARK 100 THE DEPOSITION ID IS D_1290004771. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : SA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED MTLD LYSM DOMAIN REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 39 86.75 -69.01 REMARK 500 1 LEU A 45 55.32 -117.02 REMARK 500 1 VAL A 47 143.39 -39.57 REMARK 500 2 PRO A 39 84.53 -68.84 REMARK 500 2 LEU A 45 55.09 -115.05 REMARK 500 2 VAL A 47 141.57 -39.43 REMARK 500 3 SER A 32 -82.69 -89.68 REMARK 500 3 THR A 34 42.36 -88.20 REMARK 500 3 PRO A 39 86.30 -68.45 REMARK 500 3 LEU A 45 55.13 -110.62 REMARK 500 3 VAL A 47 144.65 -39.64 REMARK 500 4 THR A 34 32.61 -86.97 REMARK 500 4 PRO A 39 85.99 -68.69 REMARK 500 4 LEU A 45 55.53 -109.02 REMARK 500 4 VAL A 47 142.87 -37.94 REMARK 500 5 PRO A 39 85.04 -69.08 REMARK 500 5 VAL A 47 139.04 -39.59 REMARK 500 6 SER A 32 -81.92 -87.04 REMARK 500 6 THR A 34 43.78 -89.82 REMARK 500 6 PRO A 39 86.19 -69.44 REMARK 500 6 VAL A 47 140.06 -39.40 REMARK 500 7 SER A 32 -82.83 -93.13 REMARK 500 7 THR A 34 48.39 -84.37 REMARK 500 7 PRO A 39 86.83 -68.91 REMARK 500 7 LEU A 45 55.20 -110.78 REMARK 500 7 VAL A 47 142.88 -38.94 REMARK 500 8 THR A 34 32.48 -89.13 REMARK 500 8 PRO A 39 84.73 -69.10 REMARK 500 8 VAL A 47 138.15 -37.21 REMARK 500 9 THR A 34 41.08 -86.99 REMARK 500 9 PRO A 39 84.29 -69.32 REMARK 500 9 VAL A 47 143.12 -38.24 REMARK 500 10 SER A 32 -82.12 -92.31 REMARK 500 10 THR A 34 41.64 -87.12 REMARK 500 10 PRO A 39 86.39 -69.87 REMARK 500 10 LEU A 45 54.52 -117.73 REMARK 500 10 VAL A 47 137.30 -38.39 REMARK 500 11 SER A 32 -81.32 -91.00 REMARK 500 11 THR A 34 41.08 -86.22 REMARK 500 11 PRO A 39 85.59 -68.98 REMARK 500 11 LEU A 45 54.00 -115.02 REMARK 500 11 VAL A 47 137.46 -38.53 REMARK 500 12 PRO A 39 85.82 -69.29 REMARK 500 13 SER A 32 -78.72 -92.45 REMARK 500 13 THR A 34 47.06 -84.84 REMARK 500 13 PRO A 39 85.90 -69.86 REMARK 500 13 LEU A 45 54.53 -118.38 REMARK 500 13 VAL A 47 137.49 -39.00 REMARK 500 14 SER A 32 -82.53 -94.42 REMARK 500 14 THR A 34 47.57 -84.29 REMARK 500 REMARK 500 THIS ENTRY HAS 76 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 6 0.29 SIDE CHAIN REMARK 500 1 ARG A 8 0.30 SIDE CHAIN REMARK 500 1 ARG A 19 0.31 SIDE CHAIN REMARK 500 1 ARG A 29 0.30 SIDE CHAIN REMARK 500 2 ARG A 6 0.29 SIDE CHAIN REMARK 500 2 ARG A 8 0.29 SIDE CHAIN REMARK 500 2 ARG A 19 0.13 SIDE CHAIN REMARK 500 2 ARG A 29 0.26 SIDE CHAIN REMARK 500 3 ARG A 6 0.31 SIDE CHAIN REMARK 500 3 ARG A 8 0.32 SIDE CHAIN REMARK 500 3 ARG A 19 0.14 SIDE CHAIN REMARK 500 3 ARG A 29 0.26 SIDE CHAIN REMARK 500 4 ARG A 6 0.32 SIDE CHAIN REMARK 500 4 ARG A 8 0.23 SIDE CHAIN REMARK 500 4 ARG A 19 0.26 SIDE CHAIN REMARK 500 4 ARG A 29 0.31 SIDE CHAIN REMARK 500 5 ARG A 6 0.32 SIDE CHAIN REMARK 500 5 ARG A 8 0.27 SIDE CHAIN REMARK 500 5 ARG A 19 0.24 SIDE CHAIN REMARK 500 5 ARG A 29 0.28 SIDE CHAIN REMARK 500 6 ARG A 6 0.32 SIDE CHAIN REMARK 500 6 ARG A 8 0.32 SIDE CHAIN REMARK 500 6 ARG A 19 0.25 SIDE CHAIN REMARK 500 6 ARG A 29 0.31 SIDE CHAIN REMARK 500 7 ARG A 6 0.26 SIDE CHAIN REMARK 500 7 ARG A 8 0.22 SIDE CHAIN REMARK 500 7 ARG A 19 0.21 SIDE CHAIN REMARK 500 7 ARG A 29 0.23 SIDE CHAIN REMARK 500 8 ARG A 6 0.25 SIDE CHAIN REMARK 500 8 ARG A 8 0.31 SIDE CHAIN REMARK 500 8 ARG A 19 0.28 SIDE CHAIN REMARK 500 8 ARG A 29 0.24 SIDE CHAIN REMARK 500 9 ARG A 6 0.30 SIDE CHAIN REMARK 500 9 ARG A 8 0.28 SIDE CHAIN REMARK 500 9 ARG A 19 0.25 SIDE CHAIN REMARK 500 9 ARG A 29 0.29 SIDE CHAIN REMARK 500 10 ARG A 6 0.29 SIDE CHAIN REMARK 500 10 ARG A 8 0.30 SIDE CHAIN REMARK 500 10 ARG A 19 0.30 SIDE CHAIN REMARK 500 10 ARG A 29 0.23 SIDE CHAIN REMARK 500 11 ARG A 6 0.22 SIDE CHAIN REMARK 500 11 ARG A 8 0.19 SIDE CHAIN REMARK 500 11 ARG A 19 0.21 SIDE CHAIN REMARK 500 11 ARG A 29 0.32 SIDE CHAIN REMARK 500 12 ARG A 6 0.26 SIDE CHAIN REMARK 500 12 ARG A 8 0.31 SIDE CHAIN REMARK 500 12 ARG A 19 0.23 SIDE CHAIN REMARK 500 12 ARG A 29 0.24 SIDE CHAIN REMARK 500 13 ARG A 6 0.23 SIDE CHAIN REMARK 500 13 ARG A 8 0.32 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 80 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF1 1E0G A 1 48 UNP A0A2Z2J5F1_ECOLX DBREF2 1E0G A A0A2Z2J5F1 352 399 SEQRES 1 A 48 ASP SER ILE THR TYR ARG VAL ARG LYS GLY ASP SER LEU SEQRES 2 A 48 SER SER ILE ALA LYS ARG HIS GLY VAL ASN ILE LYS ASP SEQRES 3 A 48 VAL MET ARG TRP ASN SER ASP THR ALA ASN LEU GLN PRO SEQRES 4 A 48 GLY ASP LYS LEU THR LEU PHE VAL LYS HELIX 1 1 SER A 12 HIS A 20 1 9 HELIX 2 2 ASN A 23 ASN A 31 1 9 HELIX 3 3 ASP A 33 LEU A 37 5 5 SHEET 1 A 2 THR A 4 VAL A 7 0 SHEET 2 A 2 ASP A 41 THR A 44 -1 N LEU A 43 O TYR A 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1