data_1E0P # _entry.id 1E0P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1E0P PDBE EBI-4799 WWPDB D_1290004799 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1QHJ unspecified 'X-RAY STRUCTURE OF BACTERIORHODOPSIN GROWN IN LIPIDIC CUBIC PHASES' PDB 1QKP unspecified 'HIGH RESOLUTION X-RAY STRUCTURE OF AN EARLY INTERMEDIATE IN THE BACTERIORHODOPSIN PHOTOCYCLE' PDB 1QKO unspecified 'HIGH RESOLUTION X-RAY STRUCTURE OF AN EARLY INTERMEDIATE IN THE BACTERIORHODOPSIN PHOTOCYCLE' PDB 1BRD unspecified . PDB 2BRD unspecified . PDB 1BRR unspecified . PDB 1BRX unspecified . PDB 1BAC unspecified . PDB 1BAD unspecified . PDB 1BHA unspecified . PDB 1BHB unspecified . PDB 1BCT unspecified . PDB 1AP9 unspecified . PDB 1AT9 unspecified . PDB 1BM1 unspecified . # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1E0P _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2000-04-04 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Royant, A.' 1 'Edman, K.' 2 'Ursby, T.' 3 'Pebay-Peyroula, E.' 4 'Landau, E.M.' 5 'Neutze, R.' 6 # _citation.id primary _citation.title ;Helix Deformation is Coupled to Vectorial Proton Transport in Bacteriorhodopsin'S Photocycle ; _citation.journal_abbrev Nature _citation.journal_volume 406 _citation.page_first 645 _citation.page_last ? _citation.year 2000 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10949307 _citation.pdbx_database_id_DOI 10.1038/35020599 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Royant, A.' 1 primary 'Edman, K.' 2 primary 'Ursby, T.' 3 primary 'Pebay-Peyroula, E.' 4 primary 'Landau, E.M.' 5 primary 'Neutze, R.' 6 # _cell.entry_id 1E0P _cell.length_a 60.960 _cell.length_b 60.960 _cell.length_c 109.970 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1E0P _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'BACTERIORHODOPSIN, GROUND STATE' 24990.535 1 ? ? ? 'CONFORMER B IS GROUND STATE, CONFORMER A IS THE L-STATE FORM.' 2 non-polymer syn RETINAL 284.436 1 ? ? ? ? 3 water nat water 18.015 30 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYA DWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMR PEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFGE ; _entity_poly.pdbx_seq_one_letter_code_can ;TGRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYA DWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMR PEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFGE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 GLY n 1 3 ARG n 1 4 PRO n 1 5 GLU n 1 6 TRP n 1 7 ILE n 1 8 TRP n 1 9 LEU n 1 10 ALA n 1 11 LEU n 1 12 GLY n 1 13 THR n 1 14 ALA n 1 15 LEU n 1 16 MET n 1 17 GLY n 1 18 LEU n 1 19 GLY n 1 20 THR n 1 21 LEU n 1 22 TYR n 1 23 PHE n 1 24 LEU n 1 25 VAL n 1 26 LYS n 1 27 GLY n 1 28 MET n 1 29 GLY n 1 30 VAL n 1 31 SER n 1 32 ASP n 1 33 PRO n 1 34 ASP n 1 35 ALA n 1 36 LYS n 1 37 LYS n 1 38 PHE n 1 39 TYR n 1 40 ALA n 1 41 ILE n 1 42 THR n 1 43 THR n 1 44 LEU n 1 45 VAL n 1 46 PRO n 1 47 ALA n 1 48 ILE n 1 49 ALA n 1 50 PHE n 1 51 THR n 1 52 MET n 1 53 TYR n 1 54 LEU n 1 55 SER n 1 56 MET n 1 57 LEU n 1 58 LEU n 1 59 GLY n 1 60 TYR n 1 61 GLY n 1 62 LEU n 1 63 THR n 1 64 MET n 1 65 VAL n 1 66 PRO n 1 67 PHE n 1 68 GLY n 1 69 GLY n 1 70 GLU n 1 71 GLN n 1 72 ASN n 1 73 PRO n 1 74 ILE n 1 75 TYR n 1 76 TRP n 1 77 ALA n 1 78 ARG n 1 79 TYR n 1 80 ALA n 1 81 ASP n 1 82 TRP n 1 83 LEU n 1 84 PHE n 1 85 THR n 1 86 THR n 1 87 PRO n 1 88 LEU n 1 89 LEU n 1 90 LEU n 1 91 LEU n 1 92 ASP n 1 93 LEU n 1 94 ALA n 1 95 LEU n 1 96 LEU n 1 97 VAL n 1 98 ASP n 1 99 ALA n 1 100 ASP n 1 101 GLN n 1 102 GLY n 1 103 THR n 1 104 ILE n 1 105 LEU n 1 106 ALA n 1 107 LEU n 1 108 VAL n 1 109 GLY n 1 110 ALA n 1 111 ASP n 1 112 GLY n 1 113 ILE n 1 114 MET n 1 115 ILE n 1 116 GLY n 1 117 THR n 1 118 GLY n 1 119 LEU n 1 120 VAL n 1 121 GLY n 1 122 ALA n 1 123 LEU n 1 124 THR n 1 125 LYS n 1 126 VAL n 1 127 TYR n 1 128 SER n 1 129 TYR n 1 130 ARG n 1 131 PHE n 1 132 VAL n 1 133 TRP n 1 134 TRP n 1 135 ALA n 1 136 ILE n 1 137 SER n 1 138 THR n 1 139 ALA n 1 140 ALA n 1 141 MET n 1 142 LEU n 1 143 TYR n 1 144 ILE n 1 145 LEU n 1 146 TYR n 1 147 VAL n 1 148 LEU n 1 149 PHE n 1 150 PHE n 1 151 GLY n 1 152 PHE n 1 153 THR n 1 154 SER n 1 155 LYS n 1 156 ALA n 1 157 GLU n 1 158 SER n 1 159 MET n 1 160 ARG n 1 161 PRO n 1 162 GLU n 1 163 VAL n 1 164 ALA n 1 165 SER n 1 166 THR n 1 167 PHE n 1 168 LYS n 1 169 VAL n 1 170 LEU n 1 171 ARG n 1 172 ASN n 1 173 VAL n 1 174 THR n 1 175 VAL n 1 176 VAL n 1 177 LEU n 1 178 TRP n 1 179 SER n 1 180 ALA n 1 181 TYR n 1 182 PRO n 1 183 VAL n 1 184 VAL n 1 185 TRP n 1 186 LEU n 1 187 ILE n 1 188 GLY n 1 189 SER n 1 190 GLU n 1 191 GLY n 1 192 ALA n 1 193 GLY n 1 194 ILE n 1 195 VAL n 1 196 PRO n 1 197 LEU n 1 198 ASN n 1 199 ILE n 1 200 GLU n 1 201 THR n 1 202 LEU n 1 203 LEU n 1 204 PHE n 1 205 MET n 1 206 VAL n 1 207 LEU n 1 208 ASP n 1 209 VAL n 1 210 SER n 1 211 ALA n 1 212 LYS n 1 213 VAL n 1 214 GLY n 1 215 PHE n 1 216 GLY n 1 217 LEU n 1 218 ILE n 1 219 LEU n 1 220 LEU n 1 221 ARG n 1 222 SER n 1 223 ARG n 1 224 ALA n 1 225 ILE n 1 226 PHE n 1 227 GLY n 1 228 GLU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'HALOBACTERIUM SALINARIUM' _entity_src_nat.pdbx_ncbi_taxonomy_id 2242 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain S9 _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BACR_HALHA _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P02945 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1E0P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 228 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P02945 _struct_ref_seq.db_align_beg 18 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 245 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 5 _struct_ref_seq.pdbx_auth_seq_align_end 232 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RET non-polymer . RETINAL ? 'C20 H28 O' 284.436 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1E0P _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_percent_sol 48 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.60 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'PROTEIN FROM THE PURPLE MEMBRANE WAS RESOLVED IN OCTYL GLUC, pH 5.60' # _diffrn.id 1 _diffrn.ambient_temp 110.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1999-10-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength 0.934 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1E0P _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.500 _reflns.d_resolution_high 2.100 _reflns.number_obs 13088 _reflns.number_all ? _reflns.percent_possible_obs 96.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.06300 _reflns.pdbx_netI_over_sigmaI 9.0000 _reflns.B_iso_Wilson_estimate 19.4 _reflns.pdbx_redundancy 5.600 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.21 _reflns_shell.percent_possible_all 99.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.52100 _reflns_shell.meanI_over_sigI_obs 1.400 _reflns_shell.pdbx_redundancy 5.80 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1E0P _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 12912 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 2443186 _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.5 _refine.ls_d_res_high 2.1 _refine.ls_percent_reflns_obs 95.4 _refine.ls_R_factor_obs 0.265 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.265 _refine.ls_R_factor_R_free 0.288 _refine.ls_R_factor_R_free_error 0.012 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 593 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 40.0 _refine.aniso_B[1][1] -3.96 _refine.aniso_B[2][2] -3.96 _refine.aniso_B[3][3] 7.91 _refine.aniso_B[1][2] -0.40 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.404 _refine.solvent_model_param_bsol 75.56 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;THE COORDINATE FILE CONTAINS 2 MODELS CHAINS A AND B, ONLY A WAS REFINED, B WAS FIXED DURING THE WHOLE REFINEMENT. THE NUMBER OF ATOMS USED IN THE REFINEMENT REFERES TO CHAIN A. FREE R VALUE TEST SET SAME AS PREVIOUS REFINEMENTS 1QHJ, 1QKP, 1QKO ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1E0P _refine_analyze.Luzzati_coordinate_error_obs 0.32 _refine_analyze.Luzzati_sigma_a_obs 0.31 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.35 _refine_analyze.Luzzati_sigma_a_free 0.23 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1752 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 30 _refine_hist.number_atoms_total 1802 _refine_hist.d_res_high 2.1 _refine_hist.d_res_low 30.5 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 18.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.77 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.1 _refine_ls_shell.d_res_low 2.23 _refine_ls_shell.number_reflns_R_work 2111 _refine_ls_shell.R_factor_R_work 0.289 _refine_ls_shell.percent_reflns_obs 98.9 _refine_ls_shell.R_factor_R_free 0.286 _refine_ls_shell.R_factor_R_free_error 0.031 _refine_ls_shell.percent_reflns_R_free 4.0 _refine_ls_shell.number_reflns_R_free 87 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 RETFIN-CIS.PAR RETFIN.TOP # _struct.entry_id 1E0P _struct.title 'L intermediate of bacteriorhodopsin' _struct.pdbx_descriptor 'BACTERIORHODOPSIN, GROUND STATE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1E0P _struct_keywords.pdbx_keywords TRANSPORT _struct_keywords.text 'TRANSPORT, ION TRANSPORT, PHOTORECEPTOR, TRANSMEMBRANE, RETINAL PROTEIN HYDROGEN ION TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 5 ? GLY A 27 ? GLU A 9 GLY A 31 1 ? 23 HELX_P HELX_P2 2 MET A 28 ? VAL A 30 ? MET A 32 VAL A 34 5 ? 3 HELX_P HELX_P3 3 ASP A 32 ? LEU A 58 ? ASP A 36 LEU A 62 1 ? 27 HELX_P HELX_P4 4 TYR A 75 ? ASP A 98 ? TYR A 79 ASP A 102 1 ? 24 HELX_P HELX_P5 5 ASP A 100 ? THR A 124 ? ASP A 104 THR A 128 1 ? 25 HELX_P HELX_P6 6 VAL A 126 ? GLY A 151 ? VAL A 130 GLY A 155 1 ? 26 HELX_P HELX_P7 7 PHE A 152 ? GLU A 157 ? PHE A 156 GLU A 161 1 ? 6 HELX_P HELX_P8 8 ARG A 160 ? GLY A 188 ? ARG A 164 GLY A 192 1 ? 29 HELX_P HELX_P9 9 PRO A 196 ? VAL A 213 ? PRO A 200 VAL A 217 1 ? 18 HELX_P HELX_P10 10 VAL A 213 ? LEU A 220 ? VAL A 217 LEU A 224 1 ? 8 HELX_P HELX_P11 11 ARG A 221 ? PHE A 226 ? ARG A 225 PHE A 230 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LYS 212 NZ B ? ? 1_555 B RET . C15 B ? A LYS 216 A RET 300 1_555 ? ? ? ? ? ? ? 1.308 ? covale2 covale ? ? A LYS 212 NZ A ? ? 1_555 B RET . C15 A ? A LYS 216 A RET 300 1_555 ? ? ? ? ? ? ? 1.283 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 THR A 63 ? PHE A 67 ? THR A 67 PHE A 71 AA 2 GLU A 70 ? ILE A 74 ? GLU A 74 ILE A 78 # _pdbx_struct_sheet_hbond.sheet_id AA _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id PHE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 67 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id PHE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 71 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id GLU _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 70 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id GLU _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 74 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 16 _struct_site.details 'BINDING SITE FOR RESIDUE RET A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 TRP A 82 ? TRP A 86 . ? 1_555 ? 2 AC1 16 THR A 85 ? THR A 89 . ? 1_555 ? 3 AC1 16 THR A 86 ? THR A 90 . ? 1_555 ? 4 AC1 16 LEU A 89 ? LEU A 93 . ? 1_555 ? 5 AC1 16 MET A 114 ? MET A 118 . ? 1_555 ? 6 AC1 16 GLY A 118 ? GLY A 122 . ? 1_555 ? 7 AC1 16 TRP A 134 ? TRP A 138 . ? 1_555 ? 8 AC1 16 SER A 137 ? SER A 141 . ? 1_555 ? 9 AC1 16 THR A 138 ? THR A 142 . ? 1_555 ? 10 AC1 16 TRP A 178 ? TRP A 182 . ? 1_555 ? 11 AC1 16 TYR A 181 ? TYR A 185 . ? 1_555 ? 12 AC1 16 PRO A 182 ? PRO A 186 . ? 1_555 ? 13 AC1 16 TRP A 185 ? TRP A 189 . ? 1_555 ? 14 AC1 16 ASP A 208 ? ASP A 212 . ? 1_555 ? 15 AC1 16 ALA A 211 ? ALA A 215 . ? 1_555 ? 16 AC1 16 LYS A 212 ? LYS A 216 . ? 1_555 ? # _database_PDB_matrix.entry_id 1E0P _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1E0P _atom_sites.fract_transf_matrix[1][1] 0.016404 _atom_sites.fract_transf_matrix[1][2] 0.009471 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018942 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009093 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 5 5 THR THR A . n A 1 2 GLY 2 6 6 GLY GLY A . n A 1 3 ARG 3 7 7 ARG ARG A . n A 1 4 PRO 4 8 8 PRO PRO A . n A 1 5 GLU 5 9 9 GLU GLU A . n A 1 6 TRP 6 10 10 TRP TRP A . n A 1 7 ILE 7 11 11 ILE ILE A . n A 1 8 TRP 8 12 12 TRP TRP A . n A 1 9 LEU 9 13 13 LEU LEU A . n A 1 10 ALA 10 14 14 ALA ALA A . n A 1 11 LEU 11 15 15 LEU LEU A . n A 1 12 GLY 12 16 16 GLY GLY A . n A 1 13 THR 13 17 17 THR THR A . n A 1 14 ALA 14 18 18 ALA ALA A . n A 1 15 LEU 15 19 19 LEU LEU A . n A 1 16 MET 16 20 20 MET MET A . n A 1 17 GLY 17 21 21 GLY GLY A . n A 1 18 LEU 18 22 22 LEU LEU A . n A 1 19 GLY 19 23 23 GLY GLY A . n A 1 20 THR 20 24 24 THR THR A . n A 1 21 LEU 21 25 25 LEU LEU A . n A 1 22 TYR 22 26 26 TYR TYR A . n A 1 23 PHE 23 27 27 PHE PHE A . n A 1 24 LEU 24 28 28 LEU LEU A . n A 1 25 VAL 25 29 29 VAL VAL A . n A 1 26 LYS 26 30 30 LYS LYS A . n A 1 27 GLY 27 31 31 GLY GLY A . n A 1 28 MET 28 32 32 MET MET A . n A 1 29 GLY 29 33 33 GLY GLY A . n A 1 30 VAL 30 34 34 VAL VAL A . n A 1 31 SER 31 35 35 SER SER A . n A 1 32 ASP 32 36 36 ASP ASP A . n A 1 33 PRO 33 37 37 PRO PRO A . n A 1 34 ASP 34 38 38 ASP ASP A . n A 1 35 ALA 35 39 39 ALA ALA A . n A 1 36 LYS 36 40 40 LYS LYS A . n A 1 37 LYS 37 41 41 LYS LYS A . n A 1 38 PHE 38 42 42 PHE PHE A . n A 1 39 TYR 39 43 43 TYR TYR A . n A 1 40 ALA 40 44 44 ALA ALA A . n A 1 41 ILE 41 45 45 ILE ILE A . n A 1 42 THR 42 46 46 THR THR A . n A 1 43 THR 43 47 47 THR THR A . n A 1 44 LEU 44 48 48 LEU LEU A . n A 1 45 VAL 45 49 49 VAL VAL A . n A 1 46 PRO 46 50 50 PRO PRO A . n A 1 47 ALA 47 51 51 ALA ALA A . n A 1 48 ILE 48 52 52 ILE ILE A . n A 1 49 ALA 49 53 53 ALA ALA A . n A 1 50 PHE 50 54 54 PHE PHE A . n A 1 51 THR 51 55 55 THR THR A . n A 1 52 MET 52 56 56 MET MET A . n A 1 53 TYR 53 57 57 TYR TYR A . n A 1 54 LEU 54 58 58 LEU LEU A . n A 1 55 SER 55 59 59 SER SER A . n A 1 56 MET 56 60 60 MET MET A . n A 1 57 LEU 57 61 61 LEU LEU A . n A 1 58 LEU 58 62 62 LEU LEU A . n A 1 59 GLY 59 63 63 GLY GLY A . n A 1 60 TYR 60 64 64 TYR TYR A . n A 1 61 GLY 61 65 65 GLY GLY A . n A 1 62 LEU 62 66 66 LEU LEU A . n A 1 63 THR 63 67 67 THR THR A . n A 1 64 MET 64 68 68 MET MET A . n A 1 65 VAL 65 69 69 VAL VAL A . n A 1 66 PRO 66 70 70 PRO PRO A . n A 1 67 PHE 67 71 71 PHE PHE A . n A 1 68 GLY 68 72 72 GLY GLY A . n A 1 69 GLY 69 73 73 GLY GLY A . n A 1 70 GLU 70 74 74 GLU GLU A . n A 1 71 GLN 71 75 75 GLN GLN A . n A 1 72 ASN 72 76 76 ASN ASN A . n A 1 73 PRO 73 77 77 PRO PRO A . n A 1 74 ILE 74 78 78 ILE ILE A . n A 1 75 TYR 75 79 79 TYR TYR A . n A 1 76 TRP 76 80 80 TRP TRP A . n A 1 77 ALA 77 81 81 ALA ALA A . n A 1 78 ARG 78 82 82 ARG ARG A . n A 1 79 TYR 79 83 83 TYR TYR A . n A 1 80 ALA 80 84 84 ALA ALA A . n A 1 81 ASP 81 85 85 ASP ASP A . n A 1 82 TRP 82 86 86 TRP TRP A . n A 1 83 LEU 83 87 87 LEU LEU A . n A 1 84 PHE 84 88 88 PHE PHE A . n A 1 85 THR 85 89 89 THR THR A . n A 1 86 THR 86 90 90 THR THR A . n A 1 87 PRO 87 91 91 PRO PRO A . n A 1 88 LEU 88 92 92 LEU LEU A . n A 1 89 LEU 89 93 93 LEU LEU A . n A 1 90 LEU 90 94 94 LEU LEU A . n A 1 91 LEU 91 95 95 LEU LEU A . n A 1 92 ASP 92 96 96 ASP ASP A . n A 1 93 LEU 93 97 97 LEU LEU A . n A 1 94 ALA 94 98 98 ALA ALA A . n A 1 95 LEU 95 99 99 LEU LEU A . n A 1 96 LEU 96 100 100 LEU LEU A . n A 1 97 VAL 97 101 101 VAL VAL A . n A 1 98 ASP 98 102 102 ASP ASP A . n A 1 99 ALA 99 103 103 ALA ALA A . n A 1 100 ASP 100 104 104 ASP ASP A . n A 1 101 GLN 101 105 105 GLN GLN A . n A 1 102 GLY 102 106 106 GLY GLY A . n A 1 103 THR 103 107 107 THR THR A . n A 1 104 ILE 104 108 108 ILE ILE A . n A 1 105 LEU 105 109 109 LEU LEU A . n A 1 106 ALA 106 110 110 ALA ALA A . n A 1 107 LEU 107 111 111 LEU LEU A . n A 1 108 VAL 108 112 112 VAL VAL A . n A 1 109 GLY 109 113 113 GLY GLY A . n A 1 110 ALA 110 114 114 ALA ALA A . n A 1 111 ASP 111 115 115 ASP ASP A . n A 1 112 GLY 112 116 116 GLY GLY A . n A 1 113 ILE 113 117 117 ILE ILE A . n A 1 114 MET 114 118 118 MET MET A . n A 1 115 ILE 115 119 119 ILE ILE A . n A 1 116 GLY 116 120 120 GLY GLY A . n A 1 117 THR 117 121 121 THR THR A . n A 1 118 GLY 118 122 122 GLY GLY A . n A 1 119 LEU 119 123 123 LEU LEU A . n A 1 120 VAL 120 124 124 VAL VAL A . n A 1 121 GLY 121 125 125 GLY GLY A . n A 1 122 ALA 122 126 126 ALA ALA A . n A 1 123 LEU 123 127 127 LEU LEU A . n A 1 124 THR 124 128 128 THR THR A . n A 1 125 LYS 125 129 129 LYS LYS A . n A 1 126 VAL 126 130 130 VAL VAL A . n A 1 127 TYR 127 131 131 TYR TYR A . n A 1 128 SER 128 132 132 SER SER A . n A 1 129 TYR 129 133 133 TYR TYR A . n A 1 130 ARG 130 134 134 ARG ARG A . n A 1 131 PHE 131 135 135 PHE PHE A . n A 1 132 VAL 132 136 136 VAL VAL A . n A 1 133 TRP 133 137 137 TRP TRP A . n A 1 134 TRP 134 138 138 TRP TRP A . n A 1 135 ALA 135 139 139 ALA ALA A . n A 1 136 ILE 136 140 140 ILE ILE A . n A 1 137 SER 137 141 141 SER SER A . n A 1 138 THR 138 142 142 THR THR A . n A 1 139 ALA 139 143 143 ALA ALA A . n A 1 140 ALA 140 144 144 ALA ALA A . n A 1 141 MET 141 145 145 MET MET A . n A 1 142 LEU 142 146 146 LEU LEU A . n A 1 143 TYR 143 147 147 TYR TYR A . n A 1 144 ILE 144 148 148 ILE ILE A . n A 1 145 LEU 145 149 149 LEU LEU A . n A 1 146 TYR 146 150 150 TYR TYR A . n A 1 147 VAL 147 151 151 VAL VAL A . n A 1 148 LEU 148 152 152 LEU LEU A . n A 1 149 PHE 149 153 153 PHE PHE A . n A 1 150 PHE 150 154 154 PHE PHE A . n A 1 151 GLY 151 155 155 GLY GLY A . n A 1 152 PHE 152 156 156 PHE PHE A . n A 1 153 THR 153 157 157 THR THR A . n A 1 154 SER 154 158 158 SER SER A . n A 1 155 LYS 155 159 159 LYS LYS A . n A 1 156 ALA 156 160 160 ALA ALA A . n A 1 157 GLU 157 161 161 GLU GLU A . n A 1 158 SER 158 162 162 SER SER A . n A 1 159 MET 159 163 163 MET MET A . n A 1 160 ARG 160 164 164 ARG ARG A . n A 1 161 PRO 161 165 165 PRO PRO A . n A 1 162 GLU 162 166 166 GLU GLU A . n A 1 163 VAL 163 167 167 VAL VAL A . n A 1 164 ALA 164 168 168 ALA ALA A . n A 1 165 SER 165 169 169 SER SER A . n A 1 166 THR 166 170 170 THR THR A . n A 1 167 PHE 167 171 171 PHE PHE A . n A 1 168 LYS 168 172 172 LYS LYS A . n A 1 169 VAL 169 173 173 VAL VAL A . n A 1 170 LEU 170 174 174 LEU LEU A . n A 1 171 ARG 171 175 175 ARG ARG A . n A 1 172 ASN 172 176 176 ASN ASN A . n A 1 173 VAL 173 177 177 VAL VAL A . n A 1 174 THR 174 178 178 THR THR A . n A 1 175 VAL 175 179 179 VAL VAL A . n A 1 176 VAL 176 180 180 VAL VAL A . n A 1 177 LEU 177 181 181 LEU LEU A . n A 1 178 TRP 178 182 182 TRP TRP A . n A 1 179 SER 179 183 183 SER SER A . n A 1 180 ALA 180 184 184 ALA ALA A . n A 1 181 TYR 181 185 185 TYR TYR A . n A 1 182 PRO 182 186 186 PRO PRO A . n A 1 183 VAL 183 187 187 VAL VAL A . n A 1 184 VAL 184 188 188 VAL VAL A . n A 1 185 TRP 185 189 189 TRP TRP A . n A 1 186 LEU 186 190 190 LEU LEU A . n A 1 187 ILE 187 191 191 ILE ILE A . n A 1 188 GLY 188 192 192 GLY GLY A . n A 1 189 SER 189 193 193 SER SER A . n A 1 190 GLU 190 194 194 GLU GLU A . n A 1 191 GLY 191 195 195 GLY GLY A . n A 1 192 ALA 192 196 196 ALA ALA A . n A 1 193 GLY 193 197 197 GLY GLY A . n A 1 194 ILE 194 198 198 ILE ILE A . n A 1 195 VAL 195 199 199 VAL VAL A . n A 1 196 PRO 196 200 200 PRO PRO A . n A 1 197 LEU 197 201 201 LEU LEU A . n A 1 198 ASN 198 202 202 ASN ASN A . n A 1 199 ILE 199 203 203 ILE ILE A . n A 1 200 GLU 200 204 204 GLU GLU A . n A 1 201 THR 201 205 205 THR THR A . n A 1 202 LEU 202 206 206 LEU LEU A . n A 1 203 LEU 203 207 207 LEU LEU A . n A 1 204 PHE 204 208 208 PHE PHE A . n A 1 205 MET 205 209 209 MET MET A . n A 1 206 VAL 206 210 210 VAL VAL A . n A 1 207 LEU 207 211 211 LEU LEU A . n A 1 208 ASP 208 212 212 ASP ASP A . n A 1 209 VAL 209 213 213 VAL VAL A . n A 1 210 SER 210 214 214 SER SER A . n A 1 211 ALA 211 215 215 ALA ALA A . n A 1 212 LYS 212 216 216 LYS LYS A . n A 1 213 VAL 213 217 217 VAL VAL A . n A 1 214 GLY 214 218 218 GLY GLY A . n A 1 215 PHE 215 219 219 PHE PHE A . n A 1 216 GLY 216 220 220 GLY GLY A . n A 1 217 LEU 217 221 221 LEU LEU A . n A 1 218 ILE 218 222 222 ILE ILE A . n A 1 219 LEU 219 223 223 LEU LEU A . n A 1 220 LEU 220 224 224 LEU LEU A . n A 1 221 ARG 221 225 225 ARG ARG A . n A 1 222 SER 222 226 226 SER SER A . n A 1 223 ARG 223 227 227 ARG ARG A . n A 1 224 ALA 224 228 228 ALA ALA A . n A 1 225 ILE 225 229 229 ILE ILE A . n A 1 226 PHE 226 230 230 PHE PHE A . n A 1 227 GLY 227 231 231 GLY GLY A . n A 1 228 GLU 228 232 232 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET 1 300 300 RET RET A . C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6230 ? 1 MORE -50.93 ? 1 'SSA (A^2)' 26190 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -30.4800000000 -0.8660254038 -0.5000000000 0.0000000000 52.7929086147 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 30.4800000000 0.8660254038 -0.5000000000 0.0000000000 52.7929086147 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-08-19 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 DENZO 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 SCALEPACK 'data scaling' . ? 4 CNS phasing 1.0 ? 5 # _pdbx_entry_details.entry_id 1E0P _pdbx_entry_details.compound_details ;ALTERNATE CONFORMER B GROUND STATE MODEL FROM 1QHJ ALTERNATE CONFORMER A L-STATE MODEL ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 7 ? B -155.47 -71.22 2 1 PHE A 71 ? B -177.53 149.62 3 1 PHE A 156 ? A -129.32 -61.80 4 1 PHE A 156 ? B -127.29 -64.70 5 1 LYS A 216 ? B -107.55 -62.53 6 1 VAL A 217 ? A -122.08 -56.19 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 163 ? CG ? A MET 159 CG 2 1 Y 1 A MET 163 ? SD ? A MET 159 SD 3 1 Y 1 A MET 163 ? CE ? A MET 159 CE 4 1 Y 1 A ARG 227 ? CG ? A ARG 223 CG 5 1 Y 1 A ARG 227 ? CD ? A ARG 223 CD 6 1 Y 1 A ARG 227 ? NE ? A ARG 223 NE 7 1 Y 1 A ARG 227 ? CZ ? A ARG 223 CZ 8 1 Y 1 A ARG 227 ? NH1 ? A ARG 223 NH1 9 1 Y 1 A ARG 227 ? NH2 ? A ARG 223 NH2 10 1 Y 1 A GLU 232 ? CG ? A GLU 228 CG 11 1 Y 1 A GLU 232 ? CD ? A GLU 228 CD 12 1 Y 1 A GLU 232 ? OE1 ? A GLU 228 OE1 13 1 Y 1 A GLU 232 ? OE2 ? A GLU 228 OE2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 RETINAL RET 3 water HOH #