HEADER ELECTRON TRANSPORT 11-APR-00 1E0Z TITLE [2FE-2S]-FERREDOXIN FROM HALOBACTERIUM SALINARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOBACTERIUM SALINARIUM; SOURCE 3 ORGANISM_TAXID: 2242 KEYWDS ELECTRON TRANSPORT, IRON-SULFUR PROTEIN, FERREDOXIN, HALOPHILIC EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SCHWEIMER,B.MARG,D.OESTERHELT,P.ROESCH,H.STICHT REVDAT 6 20-NOV-24 1E0Z 1 REMARK REVDAT 5 15-NOV-23 1E0Z 1 REMARK LINK ATOM REVDAT 4 01-SEP-09 1E0Z 1 VERSN REVDAT 3 24-FEB-09 1E0Z 1 VERSN REVDAT 2 18-JUL-03 1E0Z 1 REMARK REVDAT 1 12-APR-01 1E0Z 0 JRNL AUTH B.MARG,K.SCHWEIMER,H.STICHT,D.OESTERHELT JRNL TITL A TWO-ALPHA-HELIX EXTRA DOMAIN MEDIATES THE HALOPHILIC JRNL TITL 2 CHARACTER OF A PLANT-TYPE FERREDOXIN FROM HALOPHILIC JRNL TITL 3 ARCHAEA. JRNL REF BIOCHEMISTRY V. 44 29 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15628843 JRNL DOI 10.1021/BI0485169 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.SCHWEIMER,B.-L.MARG,D.OESTERHELT,P.ROESCH,H.STICHT REMARK 1 TITL SEQUENCE-SPECIFIC 1H, 13C AND 15N RESONANCE ASSIGNMENTS AND REMARK 1 TITL 2 SECONDARY STRUCTURE OF [2FE-2S] FERREDOXIN FROM REMARK 1 TITL 3 HALOBACTERIUM SALINARUM REMARK 1 REF J.BIOMOL.NMR V. 16 347 2000 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 10826887 REMARK 1 DOI 10.1023/A:1008381016258 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. FOR RESIDUES 60-71, 87, AND 100-104 NO NMR REMARK 3 DISTANCE RESTRAINTS WERE OBTAINED BECAUSE OF THE PROXIMITY TO REMARK 3 THE PARAMAGNETIC IRON-SULFUR CLUSTER. THE CONFORMATION OF THE REMARK 3 CORRESPONDING RESIDUES WAS MODELLED BASED ON THE GEOMETRY OF THE REMARK 3 CRYSTAL STRUCTURE OF THE HOMOLOGUOUS FERREDOXIN FROM HALOARCULA REMARK 3 MARISMORTUI. REMARK 4 REMARK 4 1E0Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-00. REMARK 100 THE DEPOSITION ID IS D_1290004406. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 500 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 10% WATER/90% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1H-1H NOESY; 1H-1H TOCSY; 1H-15N REMARK 210 HSQC; 1H-13C CT-HSQC; 15N-EDITED REMARK 210 NOESY(3D); 13C-EDITED N HNCO; REMARK 210 HNCA; HNCACB; CBCA(CO)NH HBHA(CO) REMARK 210 NH; HNHA; HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, NDEE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION, REMARK 210 LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING HETERONUCLEAR REMARK 210 MULTIDIMENSIONAL NMR USING 15N- AND 13C,15N LABELED FERREDOXIN REMARK 210 SAMPLES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ASP A 81 O SER A 105 1.49 REMARK 500 O ASP A 22 H GLU A 25 1.51 REMARK 500 O ALA A 117 H LEU A 120 1.53 REMARK 500 O LEU A 123 H ARG A 126 1.54 REMARK 500 O GLU A 91 H GLU A 95 1.59 REMARK 500 HH TYR A 5 O GLY A 34 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 19 12.44 -142.54 REMARK 500 1 LEU A 32 -172.55 -59.07 REMARK 500 1 ILE A 48 -70.01 -54.62 REMARK 500 1 SER A 62 -58.51 -144.25 REMARK 500 1 ALA A 72 151.55 -44.47 REMARK 500 1 MET A 84 74.97 -69.39 REMARK 500 1 GLN A 86 78.43 -162.10 REMARK 500 1 ASN A 116 54.68 72.84 REMARK 500 2 ASP A 19 11.17 -150.47 REMARK 500 2 ILE A 48 -71.98 -40.42 REMARK 500 2 TYR A 57 -169.94 -77.06 REMARK 500 2 SER A 62 -58.57 -140.33 REMARK 500 2 ALA A 72 151.10 -48.40 REMARK 500 2 GLU A 77 146.82 170.38 REMARK 500 2 GLN A 85 -146.88 179.70 REMARK 500 2 GLN A 86 35.05 -146.47 REMARK 500 2 ASP A 97 25.30 46.97 REMARK 500 2 ASN A 116 55.97 74.32 REMARK 500 3 SER A 62 -58.72 -136.63 REMARK 500 3 ALA A 72 155.14 -43.01 REMARK 500 3 GLU A 77 144.83 176.51 REMARK 500 3 ASP A 83 176.77 -48.98 REMARK 500 3 GLN A 85 109.05 175.60 REMARK 500 3 ALA A 107 -72.01 -111.36 REMARK 500 3 ASP A 109 -74.29 -46.44 REMARK 500 3 ASN A 116 49.91 72.11 REMARK 500 4 SER A 62 -58.51 -144.31 REMARK 500 4 ALA A 72 153.17 -42.15 REMARK 500 4 GLU A 77 166.98 175.94 REMARK 500 4 MET A 84 177.38 -47.74 REMARK 500 4 GLN A 86 -36.42 -136.00 REMARK 500 4 ASP A 109 -76.25 -62.42 REMARK 500 4 ASN A 116 55.15 73.42 REMARK 500 5 ALA A 30 -66.39 -91.10 REMARK 500 5 LEU A 32 178.91 -49.50 REMARK 500 5 ILE A 48 -70.88 -43.65 REMARK 500 5 SER A 62 -58.57 -144.10 REMARK 500 5 ALA A 72 157.06 -43.01 REMARK 500 5 MET A 84 70.51 -65.97 REMARK 500 5 GLN A 85 135.62 -178.97 REMARK 500 5 ARG A 99 -152.43 -170.04 REMARK 500 5 ASP A 109 -78.77 -61.17 REMARK 500 6 LEU A 32 -171.68 -60.04 REMARK 500 6 SER A 62 -58.53 -144.26 REMARK 500 6 GLU A 77 151.71 176.65 REMARK 500 6 GLN A 85 -178.42 -170.49 REMARK 500 6 GLN A 86 19.16 -145.44 REMARK 500 6 LEU A 88 -169.97 -124.93 REMARK 500 6 ASN A 116 56.80 73.75 REMARK 500 7 ASP A 19 20.52 -154.51 REMARK 500 REMARK 500 THIS ENTRY HAS 166 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 64 0.27 SIDE CHAIN REMARK 500 1 ARG A 99 0.32 SIDE CHAIN REMARK 500 1 ARG A 126 0.31 SIDE CHAIN REMARK 500 2 ARG A 64 0.28 SIDE CHAIN REMARK 500 2 ARG A 99 0.17 SIDE CHAIN REMARK 500 2 ARG A 126 0.25 SIDE CHAIN REMARK 500 3 ARG A 64 0.32 SIDE CHAIN REMARK 500 3 ARG A 99 0.31 SIDE CHAIN REMARK 500 3 ARG A 126 0.32 SIDE CHAIN REMARK 500 4 ARG A 99 0.31 SIDE CHAIN REMARK 500 4 ARG A 126 0.32 SIDE CHAIN REMARK 500 5 ARG A 64 0.29 SIDE CHAIN REMARK 500 5 ARG A 99 0.19 SIDE CHAIN REMARK 500 5 ARG A 126 0.32 SIDE CHAIN REMARK 500 6 ARG A 64 0.26 SIDE CHAIN REMARK 500 6 ARG A 99 0.21 SIDE CHAIN REMARK 500 6 ARG A 126 0.23 SIDE CHAIN REMARK 500 7 ARG A 64 0.32 SIDE CHAIN REMARK 500 7 ARG A 99 0.32 SIDE CHAIN REMARK 500 7 ARG A 126 0.24 SIDE CHAIN REMARK 500 8 ARG A 64 0.30 SIDE CHAIN REMARK 500 8 ARG A 99 0.17 SIDE CHAIN REMARK 500 8 ARG A 126 0.32 SIDE CHAIN REMARK 500 9 ARG A 64 0.32 SIDE CHAIN REMARK 500 9 ARG A 99 0.28 SIDE CHAIN REMARK 500 9 ARG A 126 0.19 SIDE CHAIN REMARK 500 10 ARG A 64 0.24 SIDE CHAIN REMARK 500 10 ARG A 99 0.28 SIDE CHAIN REMARK 500 10 ARG A 126 0.32 SIDE CHAIN REMARK 500 11 ARG A 64 0.32 SIDE CHAIN REMARK 500 11 ARG A 99 0.30 SIDE CHAIN REMARK 500 11 ARG A 126 0.09 SIDE CHAIN REMARK 500 12 ARG A 64 0.23 SIDE CHAIN REMARK 500 12 ARG A 99 0.17 SIDE CHAIN REMARK 500 12 ARG A 126 0.17 SIDE CHAIN REMARK 500 13 ARG A 64 0.29 SIDE CHAIN REMARK 500 13 ARG A 99 0.12 SIDE CHAIN REMARK 500 13 ARG A 126 0.27 SIDE CHAIN REMARK 500 14 ARG A 99 0.25 SIDE CHAIN REMARK 500 14 ARG A 126 0.30 SIDE CHAIN REMARK 500 15 ARG A 64 0.30 SIDE CHAIN REMARK 500 15 ARG A 99 0.23 SIDE CHAIN REMARK 500 15 ARG A 126 0.32 SIDE CHAIN REMARK 500 16 ARG A 64 0.20 SIDE CHAIN REMARK 500 16 ARG A 99 0.14 SIDE CHAIN REMARK 500 16 ARG A 126 0.28 SIDE CHAIN REMARK 500 17 ARG A 64 0.26 SIDE CHAIN REMARK 500 17 ARG A 99 0.27 SIDE CHAIN REMARK 500 17 ARG A 126 0.18 SIDE CHAIN REMARK 500 18 ARG A 64 0.32 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 58 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 130 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 63 SG REMARK 620 2 FES A 130 S1 110.3 REMARK 620 3 FES A 130 S2 109.6 107.1 REMARK 620 4 CYS A 68 SG 109.8 110.1 109.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 130 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 71 SG REMARK 620 2 FES A 130 S1 110.6 REMARK 620 3 FES A 130 S2 109.6 107.2 REMARK 620 4 CYS A 102 SG 109.9 110.0 109.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 130 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E10 RELATED DB: PDB REMARK 900 [2FE-2S]-FERREDOXIN FROM HALOBACTERIUM SALINARUM DBREF 1E0Z A 1 128 UNP P00216 FER_HALSA 1 128 SEQRES 1 A 128 PRO THR VAL GLU TYR LEU ASN TYR GLU THR LEU ASP ASP SEQRES 2 A 128 GLN GLY TRP ASP MET ASP ASP ASP ASP LEU PHE GLU LYS SEQRES 3 A 128 ALA ALA ASP ALA GLY LEU ASP GLY GLU ASP TYR GLY THR SEQRES 4 A 128 MET GLU VAL ALA GLU GLY GLU TYR ILE LEU GLU ALA ALA SEQRES 5 A 128 GLU ALA GLN GLY TYR ASP TRP PRO PHE SER CYS ARG ALA SEQRES 6 A 128 GLY ALA CYS ALA ASN CYS ALA SER ILE VAL LYS GLU GLY SEQRES 7 A 128 GLU ILE ASP MET ASP MET GLN GLN ILE LEU SER ASP GLU SEQRES 8 A 128 GLU VAL GLU GLU LYS ASP VAL ARG LEU THR CYS ILE GLY SEQRES 9 A 128 SER PRO ALA ALA ASP GLU VAL LYS ILE VAL TYR ASN ALA SEQRES 10 A 128 ALY HIS LEU ASP TYR LEU GLN ASN ARG VAL ILE MODRES 1E0Z ALY A 118 LYS N(6)-ACETYLLYSINE HET ALY A 118 25 HET FES A 130 4 HETNAM ALY N(6)-ACETYLLYSINE HETNAM FES FE2/S2 (INORGANIC) CLUSTER FORMUL 1 ALY C8 H16 N2 O3 FORMUL 2 FES FE2 S2 HELIX 1 1 TYR A 8 GLN A 14 17 7 HELIX 2 2 ASP A 22 GLY A 31 110 10 HELIX 3 3 TYR A 47 ALA A 54 18 8 HELIX 4 4 SER A 89 LYS A 96 18 8 HELIX 5 5 ASN A 116 LEU A 120 55 5 HELIX 6 6 LEU A 120 VAL A 127 18 8 SHEET 1 A 5 ASP A 36 GLU A 41 0 SHEET 2 A 5 THR A 2 ASN A 7 -1 N TYR A 5 O GLY A 38 SHEET 3 A 5 GLU A 110 TYR A 115 1 N VAL A 111 O THR A 2 SHEET 4 A 5 CYS A 71 GLU A 77 -1 N GLU A 77 O LYS A 112 SHEET 5 A 5 ASP A 97 THR A 101 -1 N ARG A 99 O SER A 73 SHEET 1 B 2 GLU A 79 ASP A 83 0 SHEET 2 B 2 ILE A 103 ALA A 107 -1 N SER A 105 O ASP A 81 LINK C ALA A 117 N ALY A 118 1555 1555 1.30 LINK C ALY A 118 N HIS A 119 1555 1555 1.31 LINK SG CYS A 63 FE1 FES A 130 1555 1555 2.20 LINK SG CYS A 68 FE1 FES A 130 1555 1555 2.20 LINK SG CYS A 71 FE2 FES A 130 1555 1555 2.20 LINK SG CYS A 102 FE2 FES A 130 1555 1555 2.20 SITE 1 AC1 9 SER A 62 CYS A 63 ARG A 64 GLY A 66 SITE 2 AC1 9 ALA A 67 CYS A 68 CYS A 71 LEU A 100 SITE 3 AC1 9 CYS A 102 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1