data_1E25 # _entry.id 1E25 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1E25 PDBE EBI-4966 WWPDB D_1290004966 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1E25 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2000-05-17 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tranier, S.' 1 'Bouthors, A.T.' 2 'Maveyraud, L.' 3 'Guillet, V.' 4 'Sougakoff, W.' 5 'Samama, J.P.' 6 # _citation.id primary _citation.title 'The High Resolution Crystal Structure for Class a Beta-Lactamase Per-1 Reveals the Bases for its Increase in Breadth of Activity' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 275 _citation.page_first 28075 _citation.page_last ? _citation.year 2000 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10825176 _citation.pdbx_database_id_DOI 10.1074/JBC.M003802200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tranier, S.' 1 primary 'Bouthors, A.T.' 2 primary 'Maveyraud, L.' 3 primary 'Guillet, V.' 4 primary 'Sougakoff, W.' 5 primary 'Samama, J.P.' 6 # _cell.entry_id 1E25 _cell.length_a 84.600 _cell.length_b 84.600 _cell.length_c 46.890 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1E25 _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'EXTENDED-SPECTRUM BETA-LACTAMASE PER-1' 30945.529 1 3.5.2.6 YES ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 153 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QSPLLKEQIESIVIGKKATVGVAVWGPDDLEPLLINPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQN TWAPIMKAYQGDEFSVPVQQLLQYSVSHSDNVACDLLFELVGGPAALHDYIQSMGIKETAVVANEAQMHADDQVQYQNWT SMKGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAHKTGTSQIKAGKTAATNDLGIILLPDGRP LLVAVFVKDSAESSRTNEAIIAQVAQTAYQFELKKLSALSPN ; _entity_poly.pdbx_seq_one_letter_code_can ;QSPLLKEQIESIVIGKKATVGVAVWGPDDLEPLLINPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQN TWAPIMKAYQGDEFSVPVQQLLQYSVSHSDNVACDLLFELVGGPAALHDYIQSMGIKETAVVANEAQMHADDQVQYQNWT SMKGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAHKTGTSQIKAGKTAATNDLGIILLPDGRP LLVAVFVKDSAESSRTNEAIIAQVAQTAYQFELKKLSALSPN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 SER n 1 3 PRO n 1 4 LEU n 1 5 LEU n 1 6 LYS n 1 7 GLU n 1 8 GLN n 1 9 ILE n 1 10 GLU n 1 11 SER n 1 12 ILE n 1 13 VAL n 1 14 ILE n 1 15 GLY n 1 16 LYS n 1 17 LYS n 1 18 ALA n 1 19 THR n 1 20 VAL n 1 21 GLY n 1 22 VAL n 1 23 ALA n 1 24 VAL n 1 25 TRP n 1 26 GLY n 1 27 PRO n 1 28 ASP n 1 29 ASP n 1 30 LEU n 1 31 GLU n 1 32 PRO n 1 33 LEU n 1 34 LEU n 1 35 ILE n 1 36 ASN n 1 37 PRO n 1 38 PHE n 1 39 GLU n 1 40 LYS n 1 41 PHE n 1 42 PRO n 1 43 MET n 1 44 GLN n 1 45 SER n 1 46 VAL n 1 47 PHE n 1 48 LYS n 1 49 LEU n 1 50 HIS n 1 51 LEU n 1 52 ALA n 1 53 MET n 1 54 LEU n 1 55 VAL n 1 56 LEU n 1 57 HIS n 1 58 GLN n 1 59 VAL n 1 60 ASP n 1 61 GLN n 1 62 GLY n 1 63 LYS n 1 64 LEU n 1 65 ASP n 1 66 LEU n 1 67 ASN n 1 68 GLN n 1 69 THR n 1 70 VAL n 1 71 ILE n 1 72 VAL n 1 73 ASN n 1 74 ARG n 1 75 ALA n 1 76 LYS n 1 77 VAL n 1 78 LEU n 1 79 GLN n 1 80 ASN n 1 81 THR n 1 82 TRP n 1 83 ALA n 1 84 PRO n 1 85 ILE n 1 86 MET n 1 87 LYS n 1 88 ALA n 1 89 TYR n 1 90 GLN n 1 91 GLY n 1 92 ASP n 1 93 GLU n 1 94 PHE n 1 95 SER n 1 96 VAL n 1 97 PRO n 1 98 VAL n 1 99 GLN n 1 100 GLN n 1 101 LEU n 1 102 LEU n 1 103 GLN n 1 104 TYR n 1 105 SER n 1 106 VAL n 1 107 SER n 1 108 HIS n 1 109 SER n 1 110 ASP n 1 111 ASN n 1 112 VAL n 1 113 ALA n 1 114 CYS n 1 115 ASP n 1 116 LEU n 1 117 LEU n 1 118 PHE n 1 119 GLU n 1 120 LEU n 1 121 VAL n 1 122 GLY n 1 123 GLY n 1 124 PRO n 1 125 ALA n 1 126 ALA n 1 127 LEU n 1 128 HIS n 1 129 ASP n 1 130 TYR n 1 131 ILE n 1 132 GLN n 1 133 SER n 1 134 MET n 1 135 GLY n 1 136 ILE n 1 137 LYS n 1 138 GLU n 1 139 THR n 1 140 ALA n 1 141 VAL n 1 142 VAL n 1 143 ALA n 1 144 ASN n 1 145 GLU n 1 146 ALA n 1 147 GLN n 1 148 MET n 1 149 HIS n 1 150 ALA n 1 151 ASP n 1 152 ASP n 1 153 GLN n 1 154 VAL n 1 155 GLN n 1 156 TYR n 1 157 GLN n 1 158 ASN n 1 159 TRP n 1 160 THR n 1 161 SER n 1 162 MET n 1 163 LYS n 1 164 GLY n 1 165 ALA n 1 166 ALA n 1 167 GLU n 1 168 ILE n 1 169 LEU n 1 170 LYS n 1 171 LYS n 1 172 PHE n 1 173 GLU n 1 174 GLN n 1 175 LYS n 1 176 THR n 1 177 GLN n 1 178 LEU n 1 179 SER n 1 180 GLU n 1 181 THR n 1 182 SER n 1 183 GLN n 1 184 ALA n 1 185 LEU n 1 186 LEU n 1 187 TRP n 1 188 LYS n 1 189 TRP n 1 190 MET n 1 191 VAL n 1 192 GLU n 1 193 THR n 1 194 THR n 1 195 THR n 1 196 GLY n 1 197 PRO n 1 198 GLU n 1 199 ARG n 1 200 LEU n 1 201 LYS n 1 202 GLY n 1 203 LEU n 1 204 LEU n 1 205 PRO n 1 206 ALA n 1 207 GLY n 1 208 THR n 1 209 VAL n 1 210 VAL n 1 211 ALA n 1 212 HIS n 1 213 LYS n 1 214 THR n 1 215 GLY n 1 216 THR n 1 217 SER n 1 218 GLN n 1 219 ILE n 1 220 LYS n 1 221 ALA n 1 222 GLY n 1 223 LYS n 1 224 THR n 1 225 ALA n 1 226 ALA n 1 227 THR n 1 228 ASN n 1 229 ASP n 1 230 LEU n 1 231 GLY n 1 232 ILE n 1 233 ILE n 1 234 LEU n 1 235 LEU n 1 236 PRO n 1 237 ASP n 1 238 GLY n 1 239 ARG n 1 240 PRO n 1 241 LEU n 1 242 LEU n 1 243 VAL n 1 244 ALA n 1 245 VAL n 1 246 PHE n 1 247 VAL n 1 248 LYS n 1 249 ASP n 1 250 SER n 1 251 ALA n 1 252 GLU n 1 253 SER n 1 254 SER n 1 255 ARG n 1 256 THR n 1 257 ASN n 1 258 GLU n 1 259 ALA n 1 260 ILE n 1 261 ILE n 1 262 ALA n 1 263 GLN n 1 264 VAL n 1 265 ALA n 1 266 GLN n 1 267 THR n 1 268 ALA n 1 269 TYR n 1 270 GLN n 1 271 PHE n 1 272 GLU n 1 273 LEU n 1 274 LYS n 1 275 LYS n 1 276 LEU n 1 277 SER n 1 278 ALA n 1 279 LEU n 1 280 SER n 1 281 PRO n 1 282 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BLAPER-1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain RNL-1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'PSEUDOMONAS AERUGINOSA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain JM109 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PK19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BLE1_PSEAE _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P37321 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1E25 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 282 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P37321 _struct_ref_seq.db_align_beg 27 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 308 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 25 _struct_ref_seq.pdbx_auth_seq_align_end 300 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1E25 _struct_ref_seq_dif.mon_id GLN _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 218 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P37321 _struct_ref_seq_dif.db_mon_id GLY _struct_ref_seq_dif.pdbx_seq_db_seq_num 244 _struct_ref_seq_dif.details 'cloning artifact' _struct_ref_seq_dif.pdbx_auth_seq_num 239 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1E25 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.7 _exptl_crystal.density_percent_sol 55 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.70 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '18% (V/V) SATURATED AMMONIUM SULFATE, 1MM DITHIOTHREITOL, 100 MM SODIUM ACETATE, PH4.7, pH 4.70' # _diffrn.id 1 _diffrn.ambient_temp 293.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-04-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'LURE BEAMLINE DW32' _diffrn_source.pdbx_synchrotron_site LURE _diffrn_source.pdbx_synchrotron_beamline DW32 _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1E25 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 24.180 _reflns.d_resolution_high 1.900 _reflns.number_obs 25029 _reflns.number_all ? _reflns.percent_possible_obs 94.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.05200 _reflns.pdbx_netI_over_sigmaI 9.2000 _reflns.B_iso_Wilson_estimate 11.6 _reflns.pdbx_redundancy 2.700 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 2.00 _reflns_shell.percent_possible_all 93.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.12200 _reflns_shell.meanI_over_sigI_obs 5.600 _reflns_shell.pdbx_redundancy 2.60 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1E25 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 25707 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1509650.34 _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.94 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 97.3 _refine.ls_R_factor_obs 0.14 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.14 _refine.ls_R_factor_R_free 0.183 _refine.ls_R_factor_R_free_error 0.004 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 2533 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 22 _refine.aniso_B[1][1] 1.04 _refine.aniso_B[2][2] 1.04 _refine.aniso_B[3][3] -2.08 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.364363 _refine.solvent_model_param_bsol 66.0192 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'THE 3 C-TERMINAL RESIDUES AND THE FIRST N-TERMINAL RESIDUE WERE NOT SEEN IN THE DENSITY MAPS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1E25 _refine_analyze.Luzzati_coordinate_error_obs 0.15 _refine_analyze.Luzzati_sigma_a_obs 0.14 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.20 _refine_analyze.Luzzati_sigma_a_free 0.13 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2142 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 153 _refine_hist.number_atoms_total 2300 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 19.94 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.6 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.87 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 2.54 3.00 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 3.44 5.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 6.40 7.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 8.82 10.00 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 2.02 _refine_ls_shell.number_reflns_R_work 3835 _refine_ls_shell.R_factor_R_work 0.185 _refine_ls_shell.percent_reflns_obs 97.7 _refine_ls_shell.R_factor_R_free 0.217 _refine_ls_shell.R_factor_R_free_error 0.011 _refine_ls_shell.percent_reflns_R_free 9.9 _refine_ls_shell.number_reflns_R_free 423 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ION.TOP # _struct.entry_id 1E25 _struct.title 'The high resolution structure of PER-1 class A beta-lactamase' _struct.pdbx_descriptor 'EXTENDED-SPECTRUM BETA-LACTAMASE PER-1 (E.C.3.5.2.6)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1E25 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, ANTIBIOTIC RESISTANCE, CLASS A CEPHALOSPORINASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 2 ? ILE A 14 ? SER A 26 ILE A 38 1 ? 13 HELX_P HELX_P2 2 VAL A 46 ? GLN A 61 ? VAL A 71 GLN A 86 1 ? 16 HELX_P HELX_P3 3 PRO A 84 ? TYR A 89 ? PRO A 107 TYR A 112 1 ? 6 HELX_P HELX_P4 4 VAL A 98 ? SER A 109 ? VAL A 119 SER A 130 1 ? 12 HELX_P HELX_P5 5 ASP A 110 ? GLY A 122 ? ASP A 131 GLY A 143 1 ? 13 HELX_P HELX_P6 6 GLY A 122 ? MET A 134 ? GLY A 143 MET A 155 1 ? 13 HELX_P HELX_P7 7 ASN A 144 ? ASP A 151 ? ASN A 165 ASP A 172 1 ? 8 HELX_P HELX_P8 8 GLN A 153 ? GLN A 157 ? GLN A 174 GLN A 178 5 ? 5 HELX_P HELX_P9 9 SER A 161 ? GLN A 174 ? SER A 182 GLN A 195 1 ? 14 HELX_P HELX_P10 10 SER A 179 ? GLU A 192 ? SER A 200 GLU A 213 1 ? 14 HELX_P HELX_P11 11 SER A 253 ? LEU A 279 ? SER A 271 LEU A 297 1 ? 27 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 33 ? ILE A 35 ? LEU A 57 ILE A 60 A 2 THR A 19 ? TRP A 25 ? THR A 43 TRP A 49 A 3 PRO A 240 ? LYS A 248 ? PRO A 258 LYS A 266 A 4 ALA A 226 ? LEU A 234 ? ALA A 243 LEU A 251 A 5 VAL A 210 ? THR A 216 ? VAL A 231 THR A 237 B 1 THR A 69 ? ASN A 73 ? THR A 94 ASN A 98 B 2 GLU A 93 ? PRO A 97 ? GLU A 114 PRO A 118 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 33 ? O LEU A 57 N VAL A 24 ? N VAL A 48 A 2 3 O THR A 19 ? O THR A 43 N LYS A 248 ? N LYS A 266 A 3 4 O LEU A 241 ? O LEU A 259 N ILE A 233 ? N ILE A 250 A 4 5 O ASN A 228 ? O ASN A 245 N GLY A 215 ? N GLY A 236 B 1 2 O VAL A 70 ? O VAL A 95 N VAL A 96 ? N VAL A 117 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 500' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 SER A 45 ? SER A 70 . ? 1_555 ? 2 AC1 8 SER A 109 ? SER A 130 . ? 1_555 ? 3 AC1 8 LYS A 213 ? LYS A 234 . ? 1_555 ? 4 AC1 8 THR A 214 ? THR A 235 . ? 1_555 ? 5 AC1 8 GLY A 215 ? GLY A 236 . ? 1_555 ? 6 AC1 8 THR A 216 ? THR A 237 . ? 1_555 ? 7 AC1 8 HOH C . ? HOH A 2152 . ? 1_555 ? 8 AC1 8 HOH C . ? HOH A 2153 . ? 1_555 ? # _database_PDB_matrix.entry_id 1E25 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1E25 _atom_sites.fract_transf_matrix[1][1] 0.011820 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011820 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021326 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 25 ? ? ? A . n A 1 2 SER 2 26 26 SER SER A . n A 1 3 PRO 3 27 27 PRO PRO A . n A 1 4 LEU 4 28 28 LEU LEU A . n A 1 5 LEU 5 29 29 LEU LEU A . n A 1 6 LYS 6 30 30 LYS LYS A . n A 1 7 GLU 7 31 31 GLU GLU A . n A 1 8 GLN 8 32 32 GLN GLN A . n A 1 9 ILE 9 33 33 ILE ILE A . n A 1 10 GLU 10 34 34 GLU GLU A . n A 1 11 SER 11 35 35 SER SER A . n A 1 12 ILE 12 36 36 ILE ILE A . n A 1 13 VAL 13 37 37 VAL VAL A . n A 1 14 ILE 14 38 38 ILE ILE A . n A 1 15 GLY 15 39 39 GLY GLY A . n A 1 16 LYS 16 40 40 LYS LYS A . n A 1 17 LYS 17 41 41 LYS LYS A . n A 1 18 ALA 18 42 42 ALA ALA A . n A 1 19 THR 19 43 43 THR THR A . n A 1 20 VAL 20 44 44 VAL VAL A . n A 1 21 GLY 21 45 45 GLY GLY A . n A 1 22 VAL 22 46 46 VAL VAL A . n A 1 23 ALA 23 47 47 ALA ALA A . n A 1 24 VAL 24 48 48 VAL VAL A . n A 1 25 TRP 25 49 49 TRP TRP A . n A 1 26 GLY 26 50 50 GLY GLY A . n A 1 27 PRO 27 51 51 PRO PRO A . n A 1 28 ASP 28 52 52 ASP ASP A . n A 1 29 ASP 29 53 53 ASP ASP A . n A 1 30 LEU 30 54 54 LEU LEU A . n A 1 31 GLU 31 55 55 GLU GLU A . n A 1 32 PRO 32 56 56 PRO PRO A . n A 1 33 LEU 33 57 57 LEU LEU A . n A 1 34 LEU 34 59 59 LEU LEU A . n A 1 35 ILE 35 60 60 ILE ILE A . n A 1 36 ASN 36 61 61 ASN ASN A . n A 1 37 PRO 37 62 62 PRO PRO A . n A 1 38 PHE 38 63 63 PHE PHE A . n A 1 39 GLU 39 64 64 GLU GLU A . n A 1 40 LYS 40 65 65 LYS LYS A . n A 1 41 PHE 41 66 66 PHE PHE A . n A 1 42 PRO 42 67 67 PRO PRO A . n A 1 43 MET 43 68 68 MET MET A . n A 1 44 GLN 44 69 69 GLN GLN A . n A 1 45 SER 45 70 70 SER SER A . n A 1 46 VAL 46 71 71 VAL VAL A . n A 1 47 PHE 47 72 72 PHE PHE A . n A 1 48 LYS 48 73 73 LYS LYS A . n A 1 49 LEU 49 74 74 LEU LEU A . n A 1 50 HIS 50 75 75 HIS HIS A . n A 1 51 LEU 51 76 76 LEU LEU A . n A 1 52 ALA 52 77 77 ALA ALA A . n A 1 53 MET 53 78 78 MET MET A . n A 1 54 LEU 54 79 79 LEU LEU A . n A 1 55 VAL 55 80 80 VAL VAL A . n A 1 56 LEU 56 81 81 LEU LEU A . n A 1 57 HIS 57 82 82 HIS HIS A . n A 1 58 GLN 58 83 83 GLN GLN A . n A 1 59 VAL 59 84 84 VAL VAL A . n A 1 60 ASP 60 85 85 ASP ASP A . n A 1 61 GLN 61 86 86 GLN GLN A . n A 1 62 GLY 62 87 87 GLY GLY A . n A 1 63 LYS 63 88 88 LYS LYS A . n A 1 64 LEU 64 89 89 LEU LEU A . n A 1 65 ASP 65 90 90 ASP ASP A . n A 1 66 LEU 66 91 91 LEU LEU A . n A 1 67 ASN 67 92 92 ASN ASN A . n A 1 68 GLN 68 93 93 GLN GLN A . n A 1 69 THR 69 94 94 THR THR A . n A 1 70 VAL 70 95 95 VAL VAL A . n A 1 71 ILE 71 96 96 ILE ILE A . n A 1 72 VAL 72 97 97 VAL VAL A . n A 1 73 ASN 73 98 98 ASN ASN A . n A 1 74 ARG 74 99 99 ARG ARG A . n A 1 75 ALA 75 100 100 ALA ALA A . n A 1 76 LYS 76 101 101 LYS LYS A . n A 1 77 VAL 77 102 102 VAL VAL A . n A 1 78 LEU 78 103 103 LEU LEU A . n A 1 79 GLN 79 103 103 GLN GLN A A n A 1 80 ASN 80 103 103 ASN ASN A B n A 1 81 THR 81 104 104 THR THR A . n A 1 82 TRP 82 105 105 TRP TRP A . n A 1 83 ALA 83 106 106 ALA ALA A . n A 1 84 PRO 84 107 107 PRO PRO A . n A 1 85 ILE 85 108 108 ILE ILE A . n A 1 86 MET 86 109 109 MET MET A . n A 1 87 LYS 87 110 110 LYS LYS A . n A 1 88 ALA 88 111 111 ALA ALA A . n A 1 89 TYR 89 112 112 TYR TYR A . n A 1 90 GLN 90 112 112 GLN GLN A A n A 1 91 GLY 91 112 112 GLY GLY A B n A 1 92 ASP 92 113 113 ASP ASP A . n A 1 93 GLU 93 114 114 GLU GLU A . n A 1 94 PHE 94 115 115 PHE PHE A . n A 1 95 SER 95 116 116 SER SER A . n A 1 96 VAL 96 117 117 VAL VAL A . n A 1 97 PRO 97 118 118 PRO PRO A . n A 1 98 VAL 98 119 119 VAL VAL A . n A 1 99 GLN 99 120 120 GLN GLN A . n A 1 100 GLN 100 121 121 GLN GLN A . n A 1 101 LEU 101 122 122 LEU LEU A . n A 1 102 LEU 102 123 123 LEU LEU A . n A 1 103 GLN 103 124 124 GLN GLN A . n A 1 104 TYR 104 125 125 TYR TYR A . n A 1 105 SER 105 126 126 SER SER A . n A 1 106 VAL 106 127 127 VAL VAL A . n A 1 107 SER 107 128 128 SER SER A . n A 1 108 HIS 108 129 129 HIS HIS A . n A 1 109 SER 109 130 130 SER SER A . n A 1 110 ASP 110 131 131 ASP ASP A . n A 1 111 ASN 111 132 132 ASN ASN A . n A 1 112 VAL 112 133 133 VAL VAL A . n A 1 113 ALA 113 134 134 ALA ALA A . n A 1 114 CYS 114 135 135 CYS CYS A . n A 1 115 ASP 115 136 136 ASP ASP A . n A 1 116 LEU 116 137 137 LEU LEU A . n A 1 117 LEU 117 138 138 LEU LEU A . n A 1 118 PHE 118 139 139 PHE PHE A . n A 1 119 GLU 119 140 140 GLU GLU A . n A 1 120 LEU 120 141 141 LEU LEU A . n A 1 121 VAL 121 142 142 VAL VAL A . n A 1 122 GLY 122 143 143 GLY GLY A . n A 1 123 GLY 123 144 144 GLY GLY A . n A 1 124 PRO 124 145 145 PRO PRO A . n A 1 125 ALA 125 146 146 ALA ALA A . n A 1 126 ALA 126 147 147 ALA ALA A . n A 1 127 LEU 127 148 148 LEU LEU A . n A 1 128 HIS 128 149 149 HIS HIS A . n A 1 129 ASP 129 150 150 ASP ASP A . n A 1 130 TYR 130 151 151 TYR TYR A . n A 1 131 ILE 131 152 152 ILE ILE A . n A 1 132 GLN 132 153 153 GLN GLN A . n A 1 133 SER 133 154 154 SER SER A . n A 1 134 MET 134 155 155 MET MET A . n A 1 135 GLY 135 156 156 GLY GLY A . n A 1 136 ILE 136 157 157 ILE ILE A . n A 1 137 LYS 137 158 158 LYS LYS A . n A 1 138 GLU 138 159 159 GLU GLU A . n A 1 139 THR 139 160 160 THR THR A . n A 1 140 ALA 140 161 161 ALA ALA A . n A 1 141 VAL 141 162 162 VAL VAL A . n A 1 142 VAL 142 163 163 VAL VAL A . n A 1 143 ALA 143 164 164 ALA ALA A . n A 1 144 ASN 144 165 165 ASN ASN A . n A 1 145 GLU 145 166 166 GLU GLU A . n A 1 146 ALA 146 167 167 ALA ALA A . n A 1 147 GLN 147 168 168 GLN GLN A . n A 1 148 MET 148 169 169 MET MET A . n A 1 149 HIS 149 170 170 HIS HIS A . n A 1 150 ALA 150 171 171 ALA ALA A . n A 1 151 ASP 151 172 172 ASP ASP A . n A 1 152 ASP 152 173 173 ASP ASP A . n A 1 153 GLN 153 174 174 GLN GLN A . n A 1 154 VAL 154 175 175 VAL VAL A . n A 1 155 GLN 155 176 176 GLN GLN A . n A 1 156 TYR 156 177 177 TYR TYR A . n A 1 157 GLN 157 178 178 GLN GLN A . n A 1 158 ASN 158 179 179 ASN ASN A . n A 1 159 TRP 159 180 180 TRP TRP A . n A 1 160 THR 160 181 181 THR THR A . n A 1 161 SER 161 182 182 SER SER A . n A 1 162 MET 162 183 183 MET MET A . n A 1 163 LYS 163 184 184 LYS LYS A . n A 1 164 GLY 164 185 185 GLY GLY A . n A 1 165 ALA 165 186 186 ALA ALA A . n A 1 166 ALA 166 187 187 ALA ALA A . n A 1 167 GLU 167 188 188 GLU GLU A . n A 1 168 ILE 168 189 189 ILE ILE A . n A 1 169 LEU 169 190 190 LEU LEU A . n A 1 170 LYS 170 191 191 LYS LYS A . n A 1 171 LYS 171 192 192 LYS LYS A . n A 1 172 PHE 172 193 193 PHE PHE A . n A 1 173 GLU 173 194 194 GLU GLU A . n A 1 174 GLN 174 195 195 GLN GLN A . n A 1 175 LYS 175 196 196 LYS LYS A . n A 1 176 THR 176 197 197 THR THR A . n A 1 177 GLN 177 198 198 GLN GLN A . n A 1 178 LEU 178 199 199 LEU LEU A . n A 1 179 SER 179 200 200 SER SER A . n A 1 180 GLU 180 201 201 GLU GLU A . n A 1 181 THR 181 202 202 THR THR A . n A 1 182 SER 182 203 203 SER SER A . n A 1 183 GLN 183 204 204 GLN GLN A . n A 1 184 ALA 184 205 205 ALA ALA A . n A 1 185 LEU 185 206 206 LEU LEU A . n A 1 186 LEU 186 207 207 LEU LEU A . n A 1 187 TRP 187 208 208 TRP TRP A . n A 1 188 LYS 188 209 209 LYS LYS A . n A 1 189 TRP 189 210 210 TRP TRP A . n A 1 190 MET 190 211 211 MET MET A . n A 1 191 VAL 191 212 212 VAL VAL A . n A 1 192 GLU 192 213 213 GLU GLU A . n A 1 193 THR 193 214 214 THR THR A . n A 1 194 THR 194 215 215 THR THR A . n A 1 195 THR 195 216 216 THR THR A . n A 1 196 GLY 196 217 217 GLY GLY A . n A 1 197 PRO 197 218 218 PRO PRO A . n A 1 198 GLU 198 219 219 GLU GLU A . n A 1 199 ARG 199 220 220 ARG ARG A . n A 1 200 LEU 200 221 221 LEU LEU A . n A 1 201 LYS 201 222 222 LYS LYS A . n A 1 202 GLY 202 223 223 GLY GLY A . n A 1 203 LEU 203 224 224 LEU LEU A . n A 1 204 LEU 204 225 225 LEU LEU A . n A 1 205 PRO 205 226 226 PRO PRO A . n A 1 206 ALA 206 227 227 ALA ALA A . n A 1 207 GLY 207 228 228 GLY GLY A . n A 1 208 THR 208 229 229 THR THR A . n A 1 209 VAL 209 230 230 VAL VAL A . n A 1 210 VAL 210 231 231 VAL VAL A . n A 1 211 ALA 211 232 232 ALA ALA A . n A 1 212 HIS 212 233 233 HIS HIS A . n A 1 213 LYS 213 234 234 LYS LYS A . n A 1 214 THR 214 235 235 THR THR A . n A 1 215 GLY 215 236 236 GLY GLY A . n A 1 216 THR 216 237 237 THR THR A . n A 1 217 SER 217 238 238 SER SER A . n A 1 218 GLN 218 239 239 GLN GLN A . n A 1 219 ILE 219 240 240 ILE ILE A . n A 1 220 LYS 220 240 240 LYS LYS A A n A 1 221 ALA 221 240 240 ALA ALA A B n A 1 222 GLY 222 240 240 GLY GLY A C n A 1 223 LYS 223 240 240 LYS LYS A D n A 1 224 THR 224 241 241 THR THR A . n A 1 225 ALA 225 242 242 ALA ALA A . n A 1 226 ALA 226 243 243 ALA ALA A . n A 1 227 THR 227 244 244 THR THR A . n A 1 228 ASN 228 245 245 ASN ASN A . n A 1 229 ASP 229 246 246 ASP ASP A . n A 1 230 LEU 230 247 247 LEU LEU A . n A 1 231 GLY 231 248 248 GLY GLY A . n A 1 232 ILE 232 249 249 ILE ILE A . n A 1 233 ILE 233 250 250 ILE ILE A . n A 1 234 LEU 234 251 251 LEU LEU A . n A 1 235 LEU 235 252 252 LEU LEU A . n A 1 236 PRO 236 253 253 PRO PRO A . n A 1 237 ASP 237 255 255 ASP ASP A . n A 1 238 GLY 238 256 256 GLY GLY A . n A 1 239 ARG 239 257 257 ARG ARG A . n A 1 240 PRO 240 258 258 PRO PRO A . n A 1 241 LEU 241 259 259 LEU LEU A . n A 1 242 LEU 242 260 260 LEU LEU A . n A 1 243 VAL 243 261 261 VAL VAL A . n A 1 244 ALA 244 262 262 ALA ALA A . n A 1 245 VAL 245 263 263 VAL VAL A . n A 1 246 PHE 246 264 264 PHE PHE A . n A 1 247 VAL 247 265 265 VAL VAL A . n A 1 248 LYS 248 266 266 LYS LYS A . n A 1 249 ASP 249 267 267 ASP ASP A . n A 1 250 SER 250 268 268 SER SER A . n A 1 251 ALA 251 269 269 ALA ALA A . n A 1 252 GLU 252 270 270 GLU GLU A . n A 1 253 SER 253 271 271 SER SER A . n A 1 254 SER 254 272 272 SER SER A . n A 1 255 ARG 255 273 273 ARG ARG A . n A 1 256 THR 256 274 274 THR THR A . n A 1 257 ASN 257 275 275 ASN ASN A . n A 1 258 GLU 258 276 276 GLU GLU A . n A 1 259 ALA 259 277 277 ALA ALA A . n A 1 260 ILE 260 278 278 ILE ILE A . n A 1 261 ILE 261 279 279 ILE ILE A . n A 1 262 ALA 262 280 280 ALA ALA A . n A 1 263 GLN 263 281 281 GLN GLN A . n A 1 264 VAL 264 282 282 VAL VAL A . n A 1 265 ALA 265 283 283 ALA ALA A . n A 1 266 GLN 266 284 284 GLN GLN A . n A 1 267 THR 267 285 285 THR THR A . n A 1 268 ALA 268 286 286 ALA ALA A . n A 1 269 TYR 269 287 287 TYR TYR A . n A 1 270 GLN 270 288 288 GLN GLN A . n A 1 271 PHE 271 289 289 PHE PHE A . n A 1 272 GLU 272 290 290 GLU GLU A . n A 1 273 LEU 273 291 291 LEU LEU A . n A 1 274 LYS 274 292 292 LYS LYS A . n A 1 275 LYS 275 293 293 LYS LYS A . n A 1 276 LEU 276 294 294 LEU LEU A . n A 1 277 SER 277 295 295 SER SER A . n A 1 278 ALA 278 296 296 ALA ALA A . n A 1 279 LEU 279 297 297 LEU LEU A . n A 1 280 SER 280 298 ? ? ? A . n A 1 281 PRO 281 299 ? ? ? A . n A 1 282 ASN 282 300 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 500 500 SO4 SO4 A . C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . C 3 HOH 31 2031 2031 HOH HOH A . C 3 HOH 32 2032 2032 HOH HOH A . C 3 HOH 33 2033 2033 HOH HOH A . C 3 HOH 34 2034 2034 HOH HOH A . C 3 HOH 35 2035 2035 HOH HOH A . C 3 HOH 36 2036 2036 HOH HOH A . C 3 HOH 37 2037 2037 HOH HOH A . C 3 HOH 38 2038 2038 HOH HOH A . C 3 HOH 39 2039 2039 HOH HOH A . C 3 HOH 40 2040 2040 HOH HOH A . C 3 HOH 41 2041 2041 HOH HOH A . C 3 HOH 42 2042 2042 HOH HOH A . C 3 HOH 43 2043 2043 HOH HOH A . C 3 HOH 44 2044 2044 HOH HOH A . C 3 HOH 45 2045 2045 HOH HOH A . C 3 HOH 46 2046 2046 HOH HOH A . C 3 HOH 47 2047 2047 HOH HOH A . C 3 HOH 48 2048 2048 HOH HOH A . C 3 HOH 49 2049 2049 HOH HOH A . C 3 HOH 50 2050 2050 HOH HOH A . C 3 HOH 51 2051 2051 HOH HOH A . C 3 HOH 52 2052 2052 HOH HOH A . C 3 HOH 53 2053 2053 HOH HOH A . C 3 HOH 54 2054 2054 HOH HOH A . C 3 HOH 55 2055 2055 HOH HOH A . C 3 HOH 56 2056 2056 HOH HOH A . C 3 HOH 57 2057 2057 HOH HOH A . C 3 HOH 58 2058 2058 HOH HOH A . C 3 HOH 59 2059 2059 HOH HOH A . C 3 HOH 60 2060 2060 HOH HOH A . C 3 HOH 61 2061 2061 HOH HOH A . C 3 HOH 62 2062 2062 HOH HOH A . C 3 HOH 63 2063 2063 HOH HOH A . C 3 HOH 64 2064 2064 HOH HOH A . C 3 HOH 65 2065 2065 HOH HOH A . C 3 HOH 66 2066 2066 HOH HOH A . C 3 HOH 67 2067 2067 HOH HOH A . C 3 HOH 68 2068 2068 HOH HOH A . C 3 HOH 69 2069 2069 HOH HOH A . C 3 HOH 70 2070 2070 HOH HOH A . C 3 HOH 71 2071 2071 HOH HOH A . C 3 HOH 72 2072 2072 HOH HOH A . C 3 HOH 73 2073 2073 HOH HOH A . C 3 HOH 74 2074 2074 HOH HOH A . C 3 HOH 75 2075 2075 HOH HOH A . C 3 HOH 76 2076 2076 HOH HOH A . C 3 HOH 77 2077 2077 HOH HOH A . C 3 HOH 78 2078 2078 HOH HOH A . C 3 HOH 79 2079 2079 HOH HOH A . C 3 HOH 80 2080 2080 HOH HOH A . C 3 HOH 81 2081 2081 HOH HOH A . C 3 HOH 82 2082 2082 HOH HOH A . C 3 HOH 83 2083 2083 HOH HOH A . C 3 HOH 84 2084 2084 HOH HOH A . C 3 HOH 85 2085 2085 HOH HOH A . C 3 HOH 86 2086 2086 HOH HOH A . C 3 HOH 87 2087 2087 HOH HOH A . C 3 HOH 88 2088 2088 HOH HOH A . C 3 HOH 89 2089 2089 HOH HOH A . C 3 HOH 90 2090 2090 HOH HOH A . C 3 HOH 91 2091 2091 HOH HOH A . C 3 HOH 92 2092 2092 HOH HOH A . C 3 HOH 93 2093 2093 HOH HOH A . C 3 HOH 94 2094 2094 HOH HOH A . C 3 HOH 95 2095 2095 HOH HOH A . C 3 HOH 96 2096 2096 HOH HOH A . C 3 HOH 97 2097 2097 HOH HOH A . C 3 HOH 98 2098 2098 HOH HOH A . C 3 HOH 99 2099 2099 HOH HOH A . C 3 HOH 100 2100 2100 HOH HOH A . C 3 HOH 101 2101 2101 HOH HOH A . C 3 HOH 102 2102 2102 HOH HOH A . C 3 HOH 103 2103 2103 HOH HOH A . C 3 HOH 104 2104 2104 HOH HOH A . C 3 HOH 105 2105 2105 HOH HOH A . C 3 HOH 106 2106 2106 HOH HOH A . C 3 HOH 107 2107 2107 HOH HOH A . C 3 HOH 108 2108 2108 HOH HOH A . C 3 HOH 109 2109 2109 HOH HOH A . C 3 HOH 110 2110 2110 HOH HOH A . C 3 HOH 111 2111 2111 HOH HOH A . C 3 HOH 112 2112 2112 HOH HOH A . C 3 HOH 113 2113 2113 HOH HOH A . C 3 HOH 114 2114 2114 HOH HOH A . C 3 HOH 115 2115 2115 HOH HOH A . C 3 HOH 116 2116 2116 HOH HOH A . C 3 HOH 117 2117 2117 HOH HOH A . C 3 HOH 118 2118 2118 HOH HOH A . C 3 HOH 119 2119 2119 HOH HOH A . C 3 HOH 120 2120 2120 HOH HOH A . C 3 HOH 121 2121 2121 HOH HOH A . C 3 HOH 122 2122 2122 HOH HOH A . C 3 HOH 123 2123 2123 HOH HOH A . C 3 HOH 124 2124 2124 HOH HOH A . C 3 HOH 125 2125 2125 HOH HOH A . C 3 HOH 126 2126 2126 HOH HOH A . C 3 HOH 127 2127 2127 HOH HOH A . C 3 HOH 128 2128 2128 HOH HOH A . C 3 HOH 129 2129 2129 HOH HOH A . C 3 HOH 130 2130 2130 HOH HOH A . C 3 HOH 131 2131 2131 HOH HOH A . C 3 HOH 132 2132 2132 HOH HOH A . C 3 HOH 133 2133 2133 HOH HOH A . C 3 HOH 134 2134 2134 HOH HOH A . C 3 HOH 135 2135 2135 HOH HOH A . C 3 HOH 136 2136 2136 HOH HOH A . C 3 HOH 137 2137 2137 HOH HOH A . C 3 HOH 138 2138 2138 HOH HOH A . C 3 HOH 139 2139 2139 HOH HOH A . C 3 HOH 140 2140 2140 HOH HOH A . C 3 HOH 141 2141 2141 HOH HOH A . C 3 HOH 142 2142 2142 HOH HOH A . C 3 HOH 143 2143 2143 HOH HOH A . C 3 HOH 144 2144 2144 HOH HOH A . C 3 HOH 145 2145 2145 HOH HOH A . C 3 HOH 146 2146 2146 HOH HOH A . C 3 HOH 147 2147 2147 HOH HOH A . C 3 HOH 148 2148 2148 HOH HOH A . C 3 HOH 149 2149 2149 HOH HOH A . C 3 HOH 150 2150 2150 HOH HOH A . C 3 HOH 151 2151 2151 HOH HOH A . C 3 HOH 152 2152 2152 HOH HOH A . C 3 HOH 153 2153 2153 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-11-06 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 CNS phasing 0.5 ? 3 SHARP phasing . ? 4 CNS refinement 0.5 ? 5 # _pdbx_entry_details.entry_id 1E25 _pdbx_entry_details.compound_details 'CHAIN A ENGINEERED MUTATION GLY239GLN' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 69 ? ? 52.21 -139.83 2 1 ASN A 103 B ? 42.37 74.13 3 1 ALA A 106 ? ? -151.44 76.91 4 1 GLU A 159 ? ? -94.51 47.45 5 1 ARG A 220 ? ? -97.59 -111.96 6 1 ALA A 296 ? ? -72.28 -77.25 7 1 ALA A 296 ? ? -71.35 -77.25 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 297 ? CG ? A LEU 279 CG 2 1 Y 1 A LEU 297 ? CD1 ? A LEU 279 CD1 3 1 Y 1 A LEU 297 ? CD2 ? A LEU 279 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 25 ? A GLN 1 2 1 Y 1 A SER 298 ? A SER 280 3 1 Y 1 A PRO 299 ? A PRO 281 4 1 Y 1 A ASN 300 ? A ASN 282 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #