HEADER ELECTRON TRANSPORT 19-MAY-00 1E29 TITLE PSII ASSOCIATED CYTOCHROME C549 FROM SYNECHOCYSTIS SP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C549; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP; SOURCE 3 ORGANISM_TAXID: 1143; SOURCE 4 STRAIN: PCC 6803 KEYWDS ELECTRON TRANSPORT, PSII ASSOCIATED CYTOCHROME, CYTOCHROME, LOW KEYWDS 2 POTENTIAL, BIS_HISTIDINYL, PSII MODULATOR EXPDTA X-RAY DIFFRACTION AUTHOR C.FRAZAO,F.J.ENGUITA,R.COELHO,G.M.SHELDRICK REVDAT 10 06-NOV-24 1E29 1 LINK REVDAT 9 24-JUL-19 1E29 1 REMARK REVDAT 8 22-MAY-19 1E29 1 REMARK REVDAT 7 08-MAY-19 1E29 1 REMARK REVDAT 6 12-JUL-17 1E29 1 REVDAT 5 24-FEB-09 1E29 1 VERSN REVDAT 4 24-JUN-03 1E29 1 REMARK LINK SITE REVDAT 3 10-JUL-02 1E29 1 HET HETNAM LINK HETATM REVDAT 3 2 1 ANISOU REVDAT 2 11-MAY-01 1E29 1 REVDAT REMARK REVDAT 1 04-MAY-01 1E29 0 JRNL AUTH C.FRAZAO,F.J.ENGUITA,R.COELHO,G.M.SHELDRICK,J.A.NAVARRO, JRNL AUTH 2 M.HERVAS,M.A.DE LA ROSA,M.A.CARRONDO JRNL TITL CRYSTAL STRUCTURE OF LOW-POTENTIAL CYTOCHROME C549 FROM JRNL TITL 2 SYNECHOCYSTIS SP. PCC 6803 AT 1.21A RESOLUTION JRNL REF J.BIOL.INORG.CHEM. V. 6 324 2001 JRNL REFN ISSN 0949-8257 JRNL PMID 11315568 JRNL DOI 10.1007/S007750100208 REMARK 2 REMARK 2 RESOLUTION. 1.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 97.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.153 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.149 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 2158 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 42953 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.149 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.144 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 1923 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 38228 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1065 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 223 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1329.9 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 1051.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 3 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 12079 REMARK 3 NUMBER OF RESTRAINTS : 14469 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 ANGLE DISTANCES (A) : 0.034 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.018 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.028 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.077 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.078 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.043 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.005 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.060 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.115 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-2 REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: HEME TARGET VALUES FROM CYTOCHROME C6, STRUCTURE REMARK 3 3(1995)1159-1169 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1E29 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAY-00. REMARK 100 THE DEPOSITION ID IS D_1290004178. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.83740 REMARK 200 MONOCHROMATOR : GE SINGLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42933 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.210 REMARK 200 RESOLUTION RANGE LOW (A) : 97.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.33800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIRECT METHODS REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: LOCALIZATION OF FE ATOM BY PATTERSON ANALYSIS OF SUPER- REMARK 200 SHARPENED NATIVE OR ANOMALOUS DIFFERENCE MAPS, FOLLOWED BY FE- REMARK 200 ANCHORED ROTATION SEARCH OF CYS-GLY-GLY-CYS-HIS+HEME FRAGMENT REMARK 200 AND EXPANSION OF THIS SEED FRAGMENT TO FINAL SOLUTION REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP, VAPOUR DIFFUSION, 16% REMARK 280 PEG 8000, O.2 M CALCIUM ACETATE, 0.1 M TRIS/HCL, PH = 8.5, PH REMARK 280 8.50, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.83000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.83000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 17.11000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.43000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 17.11000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.43000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.83000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 17.11000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.43000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.83000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 17.11000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.43000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 313 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 354 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 479 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 481 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 523 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 5 OE1 - CD - OE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG A 8 CD - NE - CZ ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG A 8 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 ASP A 35 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 65 NH1 - CZ - NH2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 TYR A 82 CG - CD2 - CE2 ANGL. DEV. = 5.0 DEGREES REMARK 500 ASP A 86 C - N - CA ANGL. DEV. = 15.7 DEGREES REMARK 500 TYR A 88 CB - CG - CD1 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 13 -157.21 -137.02 REMARK 500 ASP A 67 33.61 -93.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 127 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 523 DISTANCE = 6.33 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 35 O REMARK 620 2 ASP A 35 OD1 73.0 REMARK 620 3 GLU A 127 OE1 46.3 91.4 REMARK 620 4 GLU A 127 OE2 49.8 94.1 3.8 REMARK 620 5 HOH A 332 O 72.8 89.4 115.2 117.8 REMARK 620 6 HOH A 371 O 82.3 155.0 68.0 66.1 87.0 REMARK 620 7 HOH A 449 O 118.0 74.6 162.6 166.3 55.6 122.3 REMARK 620 8 HOH A 451 O 179.3 107.5 134.0 130.4 106.7 97.2 61.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 35 OD1 REMARK 620 2 ASP A 35 OD2 44.5 REMARK 620 3 HOH A 308 O 51.7 59.9 REMARK 620 4 HOH A 340 O 71.0 86.1 122.2 REMARK 620 5 HOH A 393 O 122.8 90.2 142.1 73.5 REMARK 620 6 HOH A 449 O 72.4 116.5 77.5 79.0 140.1 REMARK 620 7 HOH A 461 O 121.1 84.6 80.7 145.3 73.2 134.6 REMARK 620 8 HOH A 499 O 100.0 109.7 53.4 147.5 132.2 68.5 66.5 REMARK 620 9 HOH A 514 O 149.9 165.4 123.9 100.9 79.8 77.6 82.4 70.8 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 HEC A 201 NA 92.2 REMARK 620 3 HEC A 201 NB 91.3 89.4 REMARK 620 4 HEC A 201 NC 90.0 177.4 89.1 REMARK 620 5 HEC A 201 ND 87.3 91.0 178.6 90.5 REMARK 620 6 HIS A 92 NE2 176.8 89.6 91.3 88.3 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 49 OD1 REMARK 620 2 ASN A 50 OD1 69.2 REMARK 620 3 HOH A 361 O 110.4 68.8 REMARK 620 4 HOH A 374 O 74.9 122.6 84.5 REMARK 620 5 HOH A 415 O 74.6 75.8 138.7 134.0 REMARK 620 6 HOH A 442 O 83.4 132.0 159.1 84.1 58.9 REMARK 620 7 HOH A 444 O 140.4 79.9 79.1 144.5 74.2 100.7 REMARK 620 8 HOH A 509 O 147.1 143.4 86.3 78.9 111.9 74.3 68.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA Z 225 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA Z 226 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA Z 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 136 DBREF 1E29 A 1 135 UNP Q55013 C550_SYNY3 26 160 SEQRES 1 A 135 VAL GLU LEU THR GLU SER THR ARG THR ILE PRO LEU ASP SEQRES 2 A 135 GLU ALA GLY GLY THR THR THR LEU THR ALA ARG GLN PHE SEQRES 3 A 135 THR ASN GLY GLN LYS ILE PHE VAL ASP THR CYS THR GLN SEQRES 4 A 135 CYS HIS LEU GLN GLY LYS THR LYS THR ASN ASN ASN VAL SEQRES 5 A 135 SER LEU GLY LEU ALA ASP LEU ALA GLY ALA GLU PRO ARG SEQRES 6 A 135 ARG ASP ASN VAL LEU ALA LEU VAL GLU PHE LEU LYS ASN SEQRES 7 A 135 PRO LYS SER TYR ASP GLY GLU ASP ASP TYR SER GLU LEU SEQRES 8 A 135 HIS PRO ASN ILE SER ARG PRO ASP ILE TYR PRO GLU MET SEQRES 9 A 135 ARG ASN TYR THR GLU ASP ASP ILE PHE ASP VAL ALA GLY SEQRES 10 A 135 TYR THR LEU ILE ALA PRO LYS LEU ASP GLU ARG TRP GLY SEQRES 11 A 135 GLY THR ILE TYR PHE HET HEC A 201 43 HET CA A 202 1 HET CA A 203 1 HET CA A 204 1 HETNAM HEC HEME C HETNAM CA CALCIUM ION FORMUL 2 HEC C34 H34 FE N4 O4 FORMUL 3 CA 3(CA 2+) FORMUL 6 HOH *223(H2 O) HELIX 1 1 THR A 22 CYS A 37 1 16 HELIX 2 2 CYS A 37 LEU A 42 1 6 HELIX 3 3 GLN A 43 LYS A 45 5 3 HELIX 4 4 GLY A 55 GLY A 61 1 7 HELIX 5 5 ASN A 68 ASN A 78 1 11 HELIX 6 6 TYR A 101 ARG A 105 5 5 HELIX 7 7 THR A 108 ASP A 126 1 19 SHEET 1 A 2 THR A 9 PRO A 11 0 SHEET 2 A 2 THR A 18 THR A 20 -1 N THR A 19 O ILE A 10 LINK SG CYS A 37 CAB HEC A 201 1555 1555 1.80 LINK SG CYS A 40 CAC HEC A 201 1555 1555 1.82 LINK O ASP A 35 CA CA A 203 1555 1555 2.35 LINK OD1 ASP A 35 CA CA A 203 1555 1555 2.39 LINK OD1 ASP A 35 CA CA A 204 1555 1555 2.93 LINK OD2 ASP A 35 CA CA A 204 1555 1555 2.69 LINK NE2 HIS A 41 FE HEC A 201 1555 1555 1.97 LINK OD1 ASN A 49 CA CA A 202 1555 1555 2.47 LINK OD1 ASN A 50 CA CA A 202 1555 1555 2.51 LINK NE2 HIS A 92 FE HEC A 201 1555 1555 2.00 LINK OE1 GLU A 127 CA CA A 203 1555 8456 2.48 LINK OE2 GLU A 127 CA CA A 203 1555 8456 3.20 LINK CA CA A 202 O HOH A 361 1555 1555 2.36 LINK CA CA A 202 O HOH A 374 1555 4566 2.36 LINK CA CA A 202 O HOH A 415 1555 1555 2.42 LINK CA CA A 202 O HOH A 442 1555 1555 2.39 LINK CA CA A 202 O HOH A 444 1555 1555 2.44 LINK CA CA A 202 O HOH A 509 1555 1555 2.33 LINK CA CA A 203 O HOH A 332 1555 1555 2.04 LINK CA CA A 203 O HOH A 371 1555 8556 2.37 LINK CA CA A 203 O HOH A 449 1555 1555 2.89 LINK CA CA A 203 O HOH A 451 1555 8556 2.05 LINK CA CA A 204 O HOH A 308 1555 1555 2.11 LINK CA CA A 204 O HOH A 340 1555 1555 2.41 LINK CA CA A 204 O HOH A 393 1555 1555 2.32 LINK CA CA A 204 O HOH A 449 1555 1555 2.50 LINK CA CA A 204 O BHOH A 461 1555 1555 2.35 LINK CA CA A 204 O HOH A 499 1555 1555 2.80 LINK CA CA A 204 O BHOH A 514 1555 1555 2.41 CISPEP 1 GLU A 63 PRO A 64 0 -11.46 SITE 1 AC1 8 ASN A 49 ASN A 50 HOH A 509 HOH A 442 SITE 2 AC1 8 HOH A 444 HOH A 415 HOH A 361 HOH A 374 SITE 1 AC2 6 ASP A 35 GLU A 127 HOH A 449 HOH A 332 SITE 2 AC2 6 HOH A 451 HOH A 371 SITE 1 AC3 8 ASP A 35 HOH A 499 HOH A 514 HOH A 449 SITE 2 AC3 8 HOH A 308 HOH A 461 HOH A 340 HOH A 393 SITE 1 AC4 21 THR A 36 CYS A 37 CYS A 40 HIS A 41 SITE 2 AC4 21 THR A 48 ASN A 49 VAL A 52 SER A 53 SITE 3 AC4 21 LEU A 54 ASP A 58 LEU A 59 ALA A 62 SITE 4 AC4 21 ARG A 66 LEU A 72 PHE A 75 TYR A 82 SITE 5 AC4 21 GLU A 90 HIS A 92 HOH A 362 HOH A 406 SITE 6 AC4 21 HOH A 319 CRYST1 34.220 86.860 97.660 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029223 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010240 0.00000