HEADER IMMUNE SYSTEM 12-JUL-00 1E4X TITLE CROSSREACTIVE BINDING OF A CIRCULARIZED PEPTIDE TO AN ANTI-TGFALPHA TITLE 2 ANTIBODY FAB-FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAB2; COMPND 3 CHAIN: H; COMPND 4 FRAGMENT: IG KAPPA HEAVY CHAIN; COMPND 5 OTHER_DETAILS: MURINE FAB-FRAGMENT; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TAB2; COMPND 8 CHAIN: I; COMPND 9 FRAGMENT: IG KAPPA HEAVY CHAIN; COMPND 10 OTHER_DETAILS: MURINE FAB-FRAGMENT; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: TAB2; COMPND 13 CHAIN: L, M; COMPND 14 FRAGMENT: IG KAPPA LIGHT CHAIN; COMPND 15 OTHER_DETAILS: MURINE FAB-FRAGMENT; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: CYCLIC PEPTIDE; COMPND 18 CHAIN: P, Q; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL_LINE: MOUSE HYBRIDOMA; SOURCE 6 ORGAN: SPLEEN; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 CELL_LINE: MOUSE HYBRIDOMA; SOURCE 12 ORGAN: SPLEEN; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 15 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 16 ORGANISM_TAXID: 10090; SOURCE 17 STRAIN: BALB/C; SOURCE 18 CELL_LINE: MOUSE HYBRIDOMA; SOURCE 19 ORGAN: SPLEEN; SOURCE 20 MOL_ID: 4; SOURCE 21 SYNTHETIC: YES; SOURCE 22 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 23 ORGANISM_TAXID: 32630 KEYWDS IMMUNE SYSTEM, COMPLEX (ANTIBODY-ANTIGEN), CROSS-REACTIVITY, PROTEIN- KEYWDS 2 PEPTIDE RECOGNITION EXPDTA X-RAY DIFFRACTION AUTHOR M.HAHN,D.WINKLER,R.MISSELWITZ,H.WESSNER,K.WELFLE,G.ZAHN,J.SCHNEIDER- AUTHOR 2 MERGENER,W.HOEHNE REVDAT 6 23-OCT-24 1E4X 1 REMARK REVDAT 5 01-MAY-24 1E4X 1 REMARK REVDAT 4 08-FEB-17 1E4X 1 SOURCE REMARK VERSN FORMUL REVDAT 3 24-FEB-09 1E4X 1 VERSN REVDAT 2 05-APR-05 1E4X 1 COMPND SOURCE JRNL REVDAT 1 12-JUL-01 1E4X 0 JRNL AUTH M.HAHN,D.WINKLER,K.WELFLE,R.MISSELWITZ,H.WELFLE,H.WESSNER, JRNL AUTH 2 G.ZAHN,C.SCHOLZ,M.SEIFERT,R.HARKINS,J.SCHNEIDER-MERGENER, JRNL AUTH 3 W.HOEHNE JRNL TITL CROSS-REACTIVE BINDING OF CYCLIC PEPTIDES TO AN ANTI-TGF JRNL TITL 2 ALPHA ANTIBODY FAB FRAGMENT: AN X-RAY STRUCTURAL AND JRNL TITL 3 THERMODYNAMIC ANALYSIS JRNL REF J.MOL.BIOL. V. 314 293 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11718562 JRNL DOI 10.1006/JMBI.2001.5135 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 68086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.311 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3427 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6708 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 407 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.013 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.036 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.060 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.012 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.167 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.190 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.245 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : 0.000 ; 15.000 REMARK 3 PLANAR (DEGREES) : 7.600 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 19.300; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 22.800; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.625 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.425 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.850 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.705 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1E4X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-00. REMARK 100 THE DEPOSITION ID IS D_1290005145. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.3 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : XRAY RESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68086 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.25700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: TAB2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN IN TRIS-HCL, 8.5, 6-10 MG/ML REMARK 280 PRECIPITANT: 12% PEG 8000, 20 MM NA-ACETATE, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 86.91000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.54500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 86.91000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.54500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, M, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CHAIN P IS A EPITOPE PEPTIDE WITH THE SEQUENCE REMARK 400 VAL-VAL-SER-HIS-PHE-ASN-ASP, DERIVED FROM THE N-TERMINUS OF REMARK 400 TGFALPHA. REMARK 400 CHAIN L, M: THE C-TERMINAL REGION IS THE CONSTANT REGION OF REMARK 400 THE IG KAPPA LIGHT CHAIN. THE N-TERMINAL REGION IS THE REMARK 400 VARIABLE REGION OF THE IG KAPPA LIGHT CHAIN. THE VARIABLE REMARK 400 REGION IS AUTOANTIBODY REACTIVE WITH SPECTRIN, REMARK 400 (4-HYRDOXY-3-NITROPHENYL) ACETYL, AND FLUORESCEIN, WHICH REMARK 400 PROMOTES CENTRAL NERVOUS SYSTEM REMYELINATION REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE H 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR H 65 N - CA - CB ANGL. DEV. = 18.1 DEGREES REMARK 500 ASP H 72 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP H 86 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP H 86 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG H 94 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 SER H 95 CA - C - O ANGL. DEV. = -16.6 DEGREES REMARK 500 PRO H 96 N - CA - CB ANGL. DEV. = 7.9 DEGREES REMARK 500 ASP H 98 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP H 127 CA - CB - CG ANGL. DEV. = 17.7 DEGREES REMARK 500 VAL H 178 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 ASP H 204 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 VAL H 211 CB - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 PRO H 212 C - N - CD ANGL. DEV. = 13.2 DEGREES REMARK 500 PRO H 212 CA - N - CD ANGL. DEV. = -8.8 DEGREES REMARK 500 GLU I 10 CA - CB - CG ANGL. DEV. = 17.5 DEGREES REMARK 500 PHE I 29 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 PHE I 29 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ASN I 76 CA - CB - CG ANGL. DEV. = 21.2 DEGREES REMARK 500 ARG I 94 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 SER I 95 CA - C - O ANGL. DEV. = -16.2 DEGREES REMARK 500 PRO I 96 CA - N - CD ANGL. DEV. = -10.1 DEGREES REMARK 500 PRO I 96 N - CA - CB ANGL. DEV. = 10.1 DEGREES REMARK 500 PRO I 96 N - CD - CG ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP I 98 CB - CG - OD1 ANGL. DEV. = 8.7 DEGREES REMARK 500 ASP I 98 CB - CG - OD2 ANGL. DEV. = -9.8 DEGREES REMARK 500 THR I 128 C - N - CA ANGL. DEV. = 28.5 DEGREES REMARK 500 THR I 128 N - CA - CB ANGL. DEV. = 20.0 DEGREES REMARK 500 SER I 157 N - CA - CB ANGL. DEV. = -10.5 DEGREES REMARK 500 VAL I 178 CB - CA - C ANGL. DEV. = -15.9 DEGREES REMARK 500 VAL I 178 CG1 - CB - CG2 ANGL. DEV. = 13.4 DEGREES REMARK 500 VAL I 211 N - CA - CB ANGL. DEV. = -16.0 DEGREES REMARK 500 ARG L 18 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 TYR L 49 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR L 50 CB - CG - CD2 ANGL. DEV. = 4.7 DEGREES REMARK 500 TYR L 50 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG L 61 CD - NE - CZ ANGL. DEV. = 11.9 DEGREES REMARK 500 THR L 69 N - CA - CB ANGL. DEV. = -16.4 DEGREES REMARK 500 THR L 69 CA - CB - CG2 ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG L 108 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 LEU L 181 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 ASN L 212 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 CYS L 214 C - N - CA ANGL. DEV. = 17.2 DEGREES REMARK 500 ARG M 18 CD - NE - CZ ANGL. DEV. = 20.4 DEGREES REMARK 500 ARG M 24 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 HIS M 31 CA - CB - CG ANGL. DEV. = 22.1 DEGREES REMARK 500 ARG M 61 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 SER M 100 N - CA - CB ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG M 108 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP M 161 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP M 167 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 56 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO H 41 -51.39 -27.59 REMARK 500 GLN H 43 156.91 -37.19 REMARK 500 ALA H 88 176.27 170.17 REMARK 500 PRO H 96 -169.38 -100.21 REMARK 500 THR H 113 101.56 -49.59 REMARK 500 CYS H 125 -120.62 31.93 REMARK 500 ASP H 127 108.65 -174.62 REMARK 500 THR H 129 159.74 -26.45 REMARK 500 LEU H 135 -167.51 -115.68 REMARK 500 PHE H 143 133.59 -171.56 REMARK 500 SER H 169 -128.23 78.87 REMARK 500 SER H 187 -55.69 -23.31 REMARK 500 ARG H 210 -155.10 -149.01 REMARK 500 VAL H 211 -106.01 -114.18 REMARK 500 PRO I 16 -161.39 -73.44 REMARK 500 GLN I 43 -137.97 -79.19 REMARK 500 LYS I 73 56.99 -64.81 REMARK 500 ASN I 76 71.57 64.29 REMARK 500 SER I 82B 64.63 32.28 REMARK 500 ALA I 88 -173.99 175.62 REMARK 500 CYS I 125 161.69 -41.85 REMARK 500 ASP I 127 157.69 -49.30 REMARK 500 THR I 128 104.22 130.70 REMARK 500 SER I 169 -124.24 50.41 REMARK 500 HIS L 31 -1.96 67.85 REMARK 500 THR L 51 -45.43 66.94 REMARK 500 ALA L 84 -179.21 -172.69 REMARK 500 ASN L 138 68.08 38.40 REMARK 500 PRO L 141 -169.09 -77.98 REMARK 500 ARG L 211 89.70 -48.62 REMARK 500 ASN L 212 -58.34 160.01 REMARK 500 GLN M 27 114.79 -162.80 REMARK 500 ASP M 28 81.28 6.65 REMARK 500 HIS M 31 -2.74 73.84 REMARK 500 THR M 51 -55.65 69.24 REMARK 500 ALA M 84 -176.47 -178.04 REMARK 500 GLU M 213 89.30 -61.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER H 95 PRO H 96 41.22 REMARK 500 SER I 95 PRO I 96 46.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER H 95 23.14 REMARK 500 SER I 95 22.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E4W RELATED DB: PDB REMARK 900 CROSSREACTIVE BINDING OF A CIRCULARIZED PEPTIDE TO AN ANTI-TGFALPHA REMARK 900 ANTIBODY FAB-FRAGMENT REMARK 900 RELATED ID: 1FBI RELATED DB: PDB REMARK 900 FAB FRAGMENT OF THE MONOCLONAL ANTIBODY F9.13.7 (IGG1) COMPLEXED REMARK 900 WITH LYSOZYME DBREF 1E4X L 1 214 PDB 1E4X 1E4X 1 214 DBREF 1E4X H 1 209 PDB 1E4X 1E4X 1 209 DBREF 1E4X P 1 7 PDB 1E4X 1E4X 1 7 DBREF 1E4X M 1 214 PDB 1E4X 1E4X 1 214 DBREF 1E4X I 1 209 PDB 1E4X 1E4X 1 209 DBREF 1E4X Q 1 7 PDB 1E4X 1E4X 1 7 SEQRES 1 H 217 GLN VAL GLN LEU GLN GLN PRO GLY ALA GLU LEU VAL LYS SEQRES 2 H 217 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 H 217 PHE THR PHE THR ASN TYR TRP MET HIS TRP VAL LYS GLN SEQRES 4 H 217 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY GLU ILE LEU SEQRES 5 H 217 PRO SER ASN GLY ARG THR ASN TYR ASN GLU LYS PHE LYS SEQRES 6 H 217 THR LYS ALA THR LEU THR VAL ASP LYS SER SER ASN THR SEQRES 7 H 217 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 217 ALA VAL TYR TYR CYS ALA ARG SER PRO SER ASP TYR TRP SEQRES 9 H 217 GLY GLN GLY THR THR LEU THR VAL SER SER ALA LYS THR SEQRES 10 H 217 THR ALA PRO SER VAL TYR PRO LEU ALA PRO VAL CYS GLY SEQRES 11 H 217 ASP THR THR GLY SER SER VAL THR LEU GLY CYS LEU VAL SEQRES 12 H 217 LYS GLY TYR PHE PRO GLU PRO VAL THR LEU THR TRP ASN SEQRES 13 H 217 SER GLY SER LEU SER SER GLY VAL HIS THR PHE PRO ALA SEQRES 14 H 217 VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SER VAL SEQRES 15 H 217 THR VAL THR SER SER THR TRP PRO SER GLN SER ILE THR SEQRES 16 H 217 CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP SEQRES 17 H 217 LYS LYS ILE GLU PRO ARG VAL PRO ILE SEQRES 1 I 217 GLN VAL GLN LEU GLN GLN PRO GLY ALA GLU LEU VAL LYS SEQRES 2 I 217 PRO GLY PRO SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 I 217 PHE THR PHE THR ASN TYR TRP MET HIS TRP VAL LYS GLN SEQRES 4 I 217 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY GLU ILE LEU SEQRES 5 I 217 PRO SER ASN GLY ARG THR ASN TYR ASN GLU LYS PHE LYS SEQRES 6 I 217 THR LYS ALA THR LEU THR VAL ASP LYS SER SER ASN THR SEQRES 7 I 217 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 I 217 ALA VAL TYR TYR CYS ALA ARG SER PRO SER ASP TYR TRP SEQRES 9 I 217 GLY GLN GLY THR THR LEU THR VAL SER SER ALA LYS THR SEQRES 10 I 217 THR ALA PRO SER VAL TYR PRO LEU ALA PRO VAL CYS GLY SEQRES 11 I 217 ASP THR THR GLY SER SER VAL THR LEU GLY CYS LEU VAL SEQRES 12 I 217 LYS GLY TYR PHE PRO GLU PRO VAL THR LEU THR TRP ASN SEQRES 13 I 217 SER GLY SER LEU SER SER GLY VAL HIS THR PHE PRO ALA SEQRES 14 I 217 VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SER VAL SEQRES 15 I 217 THR VAL THR SER SER THR TRP PRO SER GLN SER ILE THR SEQRES 16 I 217 CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP SEQRES 17 I 217 LYS LYS ILE GLU PRO ARG VAL PRO ILE SEQRES 1 L 214 ASP ILE GLN MET THR GLN THR PRO SER SER LEU SER ALA SEQRES 2 L 214 SER LEU GLY ASP ARG VAL THR ILE SER CYS ARG ALA SER SEQRES 3 L 214 GLN ASP ILE SER HIS TYR LEU ASN TRP PHE GLN GLN LYS SEQRES 4 L 214 PRO ASP GLY THR VAL LYS LEU LEU ILE TYR TYR THR SER SEQRES 5 L 214 THR LEU HIS SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP TYR SER LEU THR ILE SER ASN LEU SEQRES 7 L 214 GLU GLU GLU ASP ILE ALA PHE TYR PHE CYS GLN GLN GLY SEQRES 8 L 214 GLY ALA LEU PRO PHE THR PHE GLY SER GLY THR LYS LEU SEQRES 9 L 214 ALA ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 214 ASN GLY VAL LEU ASP SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 214 PHE ASN ARG ASN GLU CYS SEQRES 1 M 214 ASP ILE GLN MET THR GLN THR PRO SER SER LEU SER ALA SEQRES 2 M 214 SER LEU GLY ASP ARG VAL THR ILE SER CYS ARG ALA SER SEQRES 3 M 214 GLN ASP ILE SER HIS TYR LEU ASN TRP PHE GLN GLN LYS SEQRES 4 M 214 PRO ASP GLY THR VAL LYS LEU LEU ILE TYR TYR THR SER SEQRES 5 M 214 THR LEU HIS SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 M 214 GLY SER GLY THR ASP TYR SER LEU THR ILE SER ASN LEU SEQRES 7 M 214 GLU GLU GLU ASP ILE ALA PHE TYR PHE CYS GLN GLN GLY SEQRES 8 M 214 GLY ALA LEU PRO PHE THR PHE GLY SER GLY THR LYS LEU SEQRES 9 M 214 ALA ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 M 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 M 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 M 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 M 214 ASN GLY VAL LEU ASP SER TRP THR ASP GLN ASP SER LYS SEQRES 14 M 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 M 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 M 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 M 214 PHE ASN ARG ASN GLU CYS SEQRES 1 P 7 VAL VAL SER HIS PHE ASN ASP SEQRES 1 Q 7 VAL VAL SER HIS PHE ASN ASP FORMUL 7 HOH *407(H2 O) HELIX 1 1 GLU H 61 LYS H 64 5 4 HELIX 2 2 THR H 83 SER H 87 5 5 HELIX 3 3 SER H 153 SER H 155 5 3 HELIX 4 4 PRO H 197 SER H 200 5 4 HELIX 5 5 GLU I 61 LYS I 64 5 4 HELIX 6 6 THR I 83 SER I 87 5 5 HELIX 7 7 SER I 153 SER I 155 5 3 HELIX 8 8 PRO I 197 SER I 200 5 4 HELIX 9 9 GLU L 79 ILE L 83 5 5 HELIX 10 10 SER L 121 SER L 127 1 7 HELIX 11 11 LYS L 183 ARG L 188 1 6 HELIX 12 12 GLU M 79 ILE M 83 5 5 HELIX 13 13 SER M 121 SER M 127 1 7 HELIX 14 14 LYS M 183 ARG M 188 1 6 SHEET 1 A 4 MET L 4 THR L 7 0 SHEET 2 A 4 VAL L 19 ALA L 25 -1 N ARG L 24 O THR L 5 SHEET 3 A 4 ASP L 70 ILE L 75 -1 N ILE L 75 O VAL L 19 SHEET 4 A 4 PHE L 62 SER L 67 -1 N SER L 67 O ASP L 70 SHEET 1 B 5 SER L 10 ALA L 13 0 SHEET 2 B 5 THR L 102 ILE L 106 1 N LYS L 103 O LEU L 11 SHEET 3 B 5 ALA L 84 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 B 5 LEU L 33 GLN L 38 -1 N GLN L 38 O PHE L 85 SHEET 5 B 5 VAL L 44 ILE L 48 -1 N ILE L 48 O TRP L 35 SHEET 1 C 4 THR L 114 PHE L 118 0 SHEET 2 C 4 GLY L 129 ASN L 137 -1 N ASN L 137 O THR L 114 SHEET 3 C 4 MET L 175 THR L 182 -1 N LEU L 181 O ALA L 130 SHEET 4 C 4 VAL L 159 TRP L 163 -1 N SER L 162 O SER L 176 SHEET 1 D 3 ASN L 145 ILE L 150 0 SHEET 2 D 3 SER L 191 THR L 197 -1 N THR L 197 O ASN L 145 SHEET 3 D 3 ILE L 205 ASN L 210 -1 N PHE L 209 O TYR L 192 SHEET 1 E 4 GLN H 3 GLN H 6 0 SHEET 2 E 4 VAL H 18 SER H 25 -1 N SER H 25 O GLN H 3 SHEET 3 E 4 THR H 77 LEU H 82 -1 N LEU H 82 O VAL H 18 SHEET 4 E 4 ALA H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 F 6 ALA H 9 VAL H 12 0 SHEET 2 F 6 THR H 104 VAL H 108 1 N THR H 105 O GLU H 10 SHEET 3 F 6 ALA H 88 SER H 95 -1 N TYR H 90 O THR H 104 SHEET 4 F 6 TRP H 33 GLN H 39 -1 N GLN H 39 O VAL H 89 SHEET 5 F 6 LEU H 45 LEU H 52 -1 N ILE H 51 O MET H 34 SHEET 6 F 6 THR H 57 TYR H 59 -1 N ASN H 58 O GLU H 50 SHEET 1 G 4 SER H 117 LEU H 121 0 SHEET 2 G 4 SER H 132 TYR H 142 -1 N LYS H 140 O SER H 117 SHEET 3 G 4 TYR H 172 THR H 181 -1 N VAL H 180 O VAL H 133 SHEET 4 G 4 VAL H 160 THR H 162 -1 N HIS H 161 O SER H 177 SHEET 1 H 3 THR H 148 TRP H 151 0 SHEET 2 H 3 THR H 191 HIS H 196 -1 N ALA H 195 O THR H 148 SHEET 3 H 3 THR H 201 LYS H 206 -1 N LYS H 205 O CYS H 192 SHEET 1 I 2 VAL H 166 GLN H 168 0 SHEET 2 I 2 LEU H 171 THR H 173 -1 N THR H 173 O VAL H 166 SHEET 1 J 4 MET M 4 THR M 7 0 SHEET 2 J 4 VAL M 19 ALA M 25 -1 N ARG M 24 O THR M 5 SHEET 3 J 4 ASP M 70 ILE M 75 -1 N ILE M 75 O VAL M 19 SHEET 4 J 4 PHE M 62 SER M 67 -1 N SER M 67 O ASP M 70 SHEET 1 K 5 SER M 10 ALA M 13 0 SHEET 2 K 5 THR M 102 ILE M 106 1 N LYS M 103 O LEU M 11 SHEET 3 K 5 ALA M 84 GLN M 90 -1 N TYR M 86 O THR M 102 SHEET 4 K 5 LEU M 33 GLN M 38 -1 N GLN M 38 O PHE M 85 SHEET 5 K 5 VAL M 44 ILE M 48 -1 N ILE M 48 O TRP M 35 SHEET 1 L 4 THR M 114 PHE M 118 0 SHEET 2 L 4 GLY M 129 ASN M 137 -1 N ASN M 137 O THR M 114 SHEET 3 L 4 MET M 175 THR M 182 -1 N LEU M 181 O ALA M 130 SHEET 4 L 4 VAL M 159 TRP M 163 -1 N SER M 162 O SER M 176 SHEET 1 M 4 SER M 153 ARG M 155 0 SHEET 2 M 4 ASN M 145 ILE M 150 -1 N ILE M 150 O SER M 153 SHEET 3 M 4 SER M 191 THR M 197 -1 N THR M 197 O ASN M 145 SHEET 4 M 4 ILE M 205 ASN M 210 -1 N PHE M 209 O TYR M 192 SHEET 1 N 4 GLN I 3 GLN I 5 0 SHEET 2 N 4 VAL I 18 SER I 25 -1 N SER I 25 O GLN I 3 SHEET 3 N 4 THR I 77 LEU I 82 -1 N LEU I 82 O VAL I 18 SHEET 4 N 4 ALA I 67 ASP I 72 -1 N ASP I 72 O THR I 77 SHEET 1 O 6 ALA I 9 VAL I 12 0 SHEET 2 O 6 THR I 104 VAL I 108 1 N THR I 105 O GLU I 10 SHEET 3 O 6 ALA I 88 SER I 95 -1 N TYR I 90 O THR I 104 SHEET 4 O 6 TRP I 33 GLN I 39 -1 N GLN I 39 O VAL I 89 SHEET 5 O 6 LEU I 45 LEU I 52 -1 N ILE I 51 O MET I 34 SHEET 6 O 6 ARG I 56 TYR I 59 -1 N ASN I 58 O GLU I 50 SHEET 1 P 4 SER I 117 LEU I 121 0 SHEET 2 P 4 SER I 132 TYR I 142 -1 N LYS I 140 O SER I 117 SHEET 3 P 4 TYR I 172 THR I 181 -1 N VAL I 180 O VAL I 133 SHEET 4 P 4 VAL I 160 THR I 162 -1 N HIS I 161 O SER I 177 SHEET 1 Q 3 THR I 148 TRP I 151 0 SHEET 2 Q 3 THR I 191 HIS I 196 -1 N ALA I 195 O THR I 148 SHEET 3 Q 3 THR I 201 LYS I 206 -1 N LYS I 205 O CYS I 192 SHEET 1 R 2 VAL I 166 GLN I 168 0 SHEET 2 R 2 LEU I 171 THR I 173 -1 N THR I 173 O VAL I 166 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 2 CYS H 125 CYS L 214 1555 1555 2.05 SSBOND 3 CYS H 137 CYS H 192 1555 1555 2.02 SSBOND 4 CYS I 22 CYS I 92 1555 1555 2.03 SSBOND 5 CYS I 125 CYS M 214 1555 1555 2.05 SSBOND 6 CYS I 137 CYS I 192 1555 1555 2.04 SSBOND 7 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 8 CYS L 134 CYS L 194 1555 1555 2.06 SSBOND 9 CYS M 23 CYS M 88 1555 1555 2.04 SSBOND 10 CYS M 134 CYS M 194 1555 1555 2.04 CISPEP 1 PHE H 143 PRO H 144 0 -3.69 CISPEP 2 GLU H 145 PRO H 146 0 1.53 CISPEP 3 TRP H 185 PRO H 186 0 5.53 CISPEP 4 PHE I 143 PRO I 144 0 -6.55 CISPEP 5 GLU I 145 PRO I 146 0 0.13 CISPEP 6 TRP I 185 PRO I 186 0 9.03 CISPEP 7 THR L 7 PRO L 8 0 -8.28 CISPEP 8 LEU L 94 PRO L 95 0 -2.88 CISPEP 9 TYR L 140 PRO L 141 0 9.87 CISPEP 10 THR M 7 PRO M 8 0 0.38 CISPEP 11 LEU M 94 PRO M 95 0 -0.62 CISPEP 12 TYR M 140 PRO M 141 0 3.43 CRYST1 173.820 45.090 120.410 90.00 99.13 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005753 0.000000 0.000924 0.00000 SCALE2 0.000000 0.022178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008411 0.00000 MTRIX1 1 0.234050 -0.188590 -0.953760 70.50833 1 MTRIX2 1 -0.478390 -0.876370 0.055900 13.18252 1 MTRIX3 1 -0.846390 0.443180 -0.295330 32.89835 1