HEADER OXYGENASE 28-JUL-00 1E5S TITLE PROLINE 3-HYDROXYLASE (TYPE II) - IRON FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE OXIDASE; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP.; SOURCE 3 ORGANISM_TAXID: 60871; SOURCE 4 STRAIN: TH1 KEYWDS OXYGENASE, 2-OXOGLUTARATE DEPENDENT OXYGENASE EXPDTA X-RAY DIFFRACTION AUTHOR I.J.CLIFTON,L.C.HSUEH,J.E.BALDWIN,C.J.SCHOFIELD,K.HARLOS REVDAT 4 02-OCT-19 1E5S 1 JRNL REMARK REVDAT 3 24-FEB-09 1E5S 1 VERSN REVDAT 2 13-DEC-01 1E5S 1 JRNL REVDAT 1 26-JUL-01 1E5S 0 JRNL AUTH I.J.CLIFTON,L.C.HSUEH,J.E.BALDWIN,K.HARLOS,C.J.SCHOFIELD JRNL TITL STRUCTURE OF PROLINE 3-HYDROXYLASE. EVOLUTION OF THE FAMILY JRNL TITL 2 OF 2-OXOGLUTARATE DEPENDENT OXYGENASES. JRNL REF EUR.J.BIOCHEM. V. 268 6625 2001 JRNL REFN ISSN 0014-2956 JRNL PMID 11737217 JRNL DOI 10.1046/J.0014-2956.2001.02617.X REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1744118.700 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 26230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1267 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4096 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 227 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4075 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.60000 REMARK 3 B22 (A**2) : 6.60000 REMARK 3 B33 (A**2) : -13.21000 REMARK 3 B12 (A**2) : 3.88000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.34 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.023 REMARK 3 BOND ANGLES (DEGREES) : 2.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.290 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.370 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.720 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.570 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.850 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 66.31 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : IRON_PATCH.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : IRON_PATCH.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1E5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-00. REMARK 100 THE DEPOSITION ID IS D_1290005120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-97 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX7.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31827 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 19.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.59200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PROLINE HYDROXYLASE APO FORM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 50MM MES BUFFER, REMARK 280 PH6, PH 6.00, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.96667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 149.93333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 149.93333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 74.96667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 36.39000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 63.02933 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -74.96667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 31 REMARK 465 GLU A 32 REMARK 465 TYR A 33 REMARK 465 ASP A 34 REMARK 465 ALA A 49 REMARK 465 SER A 50 REMARK 465 GLY A 51 REMARK 465 ASP A 52 REMARK 465 SER A 53 REMARK 465 GLU A 54 REMARK 465 ASP A 55 REMARK 465 ARG A 56 REMARK 465 LEU A 57 REMARK 465 TYR A 58 REMARK 465 ARG A 59 REMARK 465 ASP A 60 REMARK 465 LEU A 61 REMARK 465 LYS A 62 REMARK 465 ASP A 63 REMARK 465 ALA A 64 REMARK 465 ALA A 65 REMARK 465 ALA A 66 REMARK 465 VAL A 111 REMARK 465 GLU A 112 REMARK 465 LEU A 113 REMARK 465 ASP A 114 REMARK 465 ARG A 115 REMARK 465 GLU A 116 REMARK 465 VAL A 117 REMARK 465 ASP A 118 REMARK 465 GLU B 31 REMARK 465 GLU B 32 REMARK 465 TYR B 33 REMARK 465 ASP B 34 REMARK 465 SER B 50 REMARK 465 GLY B 51 REMARK 465 ASP B 52 REMARK 465 SER B 53 REMARK 465 GLU B 54 REMARK 465 ASP B 55 REMARK 465 ARG B 56 REMARK 465 LEU B 57 REMARK 465 TYR B 58 REMARK 465 ARG B 59 REMARK 465 ASP B 60 REMARK 465 LEU B 61 REMARK 465 LYS B 62 REMARK 465 ASP B 63 REMARK 465 ALA B 64 REMARK 465 ALA B 65 REMARK 465 ALA B 66 REMARK 465 GLN B 67 REMARK 465 GLU B 112 REMARK 465 LEU B 113 REMARK 465 ASP B 114 REMARK 465 ARG B 115 REMARK 465 GLU B 116 REMARK 465 VAL B 117 REMARK 465 ASP B 118 REMARK 465 ARG B 119 REMARK 465 ALA B 176 REMARK 465 PHE B 177 REMARK 465 ASP B 178 REMARK 465 GLY B 179 REMARK 465 PRO B 180 REMARK 465 PHE B 181 REMARK 465 ASP B 182 REMARK 465 GLU B 183 REMARK 465 LYS B 184 REMARK 465 GLU B 185 REMARK 465 ILE B 186 REMARK 465 PHE B 187 REMARK 465 ALA B 188 REMARK 465 ASP B 189 REMARK 465 ALA B 190 REMARK 465 THR B 191 REMARK 465 LEU B 192 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 GLN A 67 CG CD OE1 NE2 REMARK 470 ARG A 119 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 283 CG CD OE1 OE2 REMARK 470 ARG A 284 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 30 CG CD OE1 OE2 REMARK 470 THR B 89 OG1 CG2 REMARK 470 HIS B 90 CG ND1 CD2 CE1 NE2 REMARK 470 TYR B 120 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 283 CG CD OE1 OE2 REMARK 470 ARG B 284 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2029 O HOH B 2079 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 16 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 PRO A 76 C - N - CA ANGL. DEV. = 15.3 DEGREES REMARK 500 PRO A 76 C - N - CD ANGL. DEV. = -13.8 DEGREES REMARK 500 PRO A 180 C - N - CA ANGL. DEV. = 11.5 DEGREES REMARK 500 PRO A 180 C - N - CD ANGL. DEV. = -13.4 DEGREES REMARK 500 PRO B 76 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 LEU B 233 CA - CB - CG ANGL. DEV. = 21.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 8 76.99 -163.67 REMARK 500 THR A 28 161.97 41.90 REMARK 500 VAL A 29 -173.95 -65.44 REMARK 500 LYS A 42 141.73 -170.12 REMARK 500 PRO A 68 -174.05 -38.45 REMARK 500 ALA A 70 -15.33 -48.90 REMARK 500 VAL A 72 -71.50 -34.32 REMARK 500 VAL A 75 88.52 46.87 REMARK 500 PRO A 76 -113.61 -53.62 REMARK 500 TYR A 77 -55.45 41.78 REMARK 500 PHE A 86 -163.95 -102.46 REMARK 500 ASP A 87 -138.73 132.52 REMARK 500 THR A 89 -12.26 -47.66 REMARK 500 GLN A 92 38.76 -87.01 REMARK 500 MET A 93 -175.35 171.80 REMARK 500 ALA A 94 132.15 161.44 REMARK 500 ARG A 97 107.20 -162.04 REMARK 500 PHE A 121 -172.14 -51.26 REMARK 500 ARG A 122 118.17 171.53 REMARK 500 ASN A 137 110.24 -160.68 REMARK 500 GLU A 138 -118.49 51.46 REMARK 500 ARG A 168 56.02 -144.96 REMARK 500 ASP A 178 10.43 150.37 REMARK 500 PRO A 180 120.86 14.47 REMARK 500 ASP A 189 122.09 122.55 REMARK 500 LEU A 218 0.49 -69.40 REMARK 500 ALA A 278 2.39 57.38 REMARK 500 SER A 282 152.27 -46.77 REMARK 500 ARG A 284 -3.50 105.37 REMARK 500 THR A 288 50.44 -145.31 REMARK 500 SER A 289 98.32 -177.83 REMARK 500 GLN B 13 10.97 -55.84 REMARK 500 THR B 28 -38.68 -152.25 REMARK 500 VAL B 29 146.74 49.11 REMARK 500 THR B 89 41.12 -69.04 REMARK 500 HIS B 90 22.74 149.14 REMARK 500 MET B 93 168.09 179.98 REMARK 500 ASN B 101 52.26 38.41 REMARK 500 GLU B 138 -106.66 50.53 REMARK 500 ARG B 168 51.93 -140.56 REMARK 500 PRO B 202 147.43 -35.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 249 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2002 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH B2012 DISTANCE = 5.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 800 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 109 OD1 REMARK 620 2 HIS A 158 NE2 79.6 REMARK 620 3 HIS A 107 NE2 77.8 94.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 801 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 158 NE2 REMARK 620 2 ASP B 109 OD1 97.2 REMARK 620 3 HIS B 107 NE2 87.1 77.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E5R RELATED DB: PDB REMARK 900 PROLINE 3-HYDROXYLASE (TYPE II) -APO FORM DBREF 1E5S A 1 290 UNP O09345 O09345 1 290 DBREF 1E5S B 1 290 UNP O09345 O09345 1 290 SEQRES 1 A 290 MET ARG SER HIS ILE LEU GLY LYS ILE GLU LEU ASP GLN SEQRES 2 A 290 THR ARG LEU ALA PRO ASP LEU ALA TYR LEU ALA ALA VAL SEQRES 3 A 290 PRO THR VAL GLU GLU GLU TYR ASP GLU PHE SER ASN GLY SEQRES 4 A 290 PHE TRP LYS HIS VAL PRO LEU TRP ASN ALA SER GLY ASP SEQRES 5 A 290 SER GLU ASP ARG LEU TYR ARG ASP LEU LYS ASP ALA ALA SEQRES 6 A 290 ALA GLN PRO THR ALA HIS VAL GLU HIS VAL PRO TYR LEU SEQRES 7 A 290 LYS GLU ILE VAL THR THR VAL PHE ASP GLY THR HIS LEU SEQRES 8 A 290 GLN MET ALA ARG SER ARG ASN LEU LYS ASN ALA ILE VAL SEQRES 9 A 290 ILE PRO HIS ARG ASP PHE VAL GLU LEU ASP ARG GLU VAL SEQRES 10 A 290 ASP ARG TYR PHE ARG THR PHE MET VAL LEU GLU ASP SER SEQRES 11 A 290 PRO LEU ALA PHE HIS SER ASN GLU ASP THR VAL ILE HIS SEQRES 12 A 290 MET ARG PRO GLY GLU ILE TRP PHE LEU ASP ALA ALA THR SEQRES 13 A 290 VAL HIS SER ALA VAL ASN PHE SER GLU ILE SER ARG GLN SEQRES 14 A 290 SER LEU CYS VAL ASP PHE ALA PHE ASP GLY PRO PHE ASP SEQRES 15 A 290 GLU LYS GLU ILE PHE ALA ASP ALA THR LEU TYR ALA PRO SEQRES 16 A 290 GLY SER THR PRO ASP LEU PRO GLU ARG ARG PRO PHE THR SEQRES 17 A 290 ALA GLU HIS ARG ARG ARG ILE LEU SER LEU GLY GLN VAL SEQRES 18 A 290 ILE GLU ARG GLU ASN PHE ARG ASP ILE LEU PHE LEU LEU SEQRES 19 A 290 SER LYS VAL HIS TYR LYS TYR ASP VAL HIS PRO SER GLU SEQRES 20 A 290 THR TYR ASP TRP LEU ILE GLU ILE SER LYS GLN ALA GLY SEQRES 21 A 290 ASP GLU LYS MET VAL VAL LYS ALA GLU GLN ILE ARG ASP SEQRES 22 A 290 PHE ALA VAL GLU ALA ARG ALA LEU SER GLU ARG PHE SER SEQRES 23 A 290 LEU THR SER TRP SEQRES 1 B 290 MET ARG SER HIS ILE LEU GLY LYS ILE GLU LEU ASP GLN SEQRES 2 B 290 THR ARG LEU ALA PRO ASP LEU ALA TYR LEU ALA ALA VAL SEQRES 3 B 290 PRO THR VAL GLU GLU GLU TYR ASP GLU PHE SER ASN GLY SEQRES 4 B 290 PHE TRP LYS HIS VAL PRO LEU TRP ASN ALA SER GLY ASP SEQRES 5 B 290 SER GLU ASP ARG LEU TYR ARG ASP LEU LYS ASP ALA ALA SEQRES 6 B 290 ALA GLN PRO THR ALA HIS VAL GLU HIS VAL PRO TYR LEU SEQRES 7 B 290 LYS GLU ILE VAL THR THR VAL PHE ASP GLY THR HIS LEU SEQRES 8 B 290 GLN MET ALA ARG SER ARG ASN LEU LYS ASN ALA ILE VAL SEQRES 9 B 290 ILE PRO HIS ARG ASP PHE VAL GLU LEU ASP ARG GLU VAL SEQRES 10 B 290 ASP ARG TYR PHE ARG THR PHE MET VAL LEU GLU ASP SER SEQRES 11 B 290 PRO LEU ALA PHE HIS SER ASN GLU ASP THR VAL ILE HIS SEQRES 12 B 290 MET ARG PRO GLY GLU ILE TRP PHE LEU ASP ALA ALA THR SEQRES 13 B 290 VAL HIS SER ALA VAL ASN PHE SER GLU ILE SER ARG GLN SEQRES 14 B 290 SER LEU CYS VAL ASP PHE ALA PHE ASP GLY PRO PHE ASP SEQRES 15 B 290 GLU LYS GLU ILE PHE ALA ASP ALA THR LEU TYR ALA PRO SEQRES 16 B 290 GLY SER THR PRO ASP LEU PRO GLU ARG ARG PRO PHE THR SEQRES 17 B 290 ALA GLU HIS ARG ARG ARG ILE LEU SER LEU GLY GLN VAL SEQRES 18 B 290 ILE GLU ARG GLU ASN PHE ARG ASP ILE LEU PHE LEU LEU SEQRES 19 B 290 SER LYS VAL HIS TYR LYS TYR ASP VAL HIS PRO SER GLU SEQRES 20 B 290 THR TYR ASP TRP LEU ILE GLU ILE SER LYS GLN ALA GLY SEQRES 21 B 290 ASP GLU LYS MET VAL VAL LYS ALA GLU GLN ILE ARG ASP SEQRES 22 B 290 PHE ALA VAL GLU ALA ARG ALA LEU SER GLU ARG PHE SER SEQRES 23 B 290 LEU THR SER TRP HET SO4 A 400 5 HET FE2 A 800 1 HET FE2 B 801 1 HETNAM SO4 SULFATE ION HETNAM FE2 FE (II) ION FORMUL 3 SO4 O4 S 2- FORMUL 4 FE2 2(FE 2+) FORMUL 6 HOH *216(H2 O) HELIX 1 1 ASP A 12 VAL A 26 1 15 HELIX 2 2 TYR A 77 VAL A 85 1 9 HELIX 3 3 THR A 208 SER A 217 1 10 HELIX 4 4 LEU A 218 GLN A 220 5 3 HELIX 5 5 ASN A 226 SER A 235 1 10 HELIX 6 6 LYS A 236 LYS A 240 1 5 HELIX 7 7 SER A 246 ALA A 259 1 14 HELIX 8 8 ASP A 261 GLU A 277 1 17 HELIX 9 9 ARG B 15 VAL B 26 1 12 HELIX 10 10 HIS B 71 HIS B 74 5 4 HELIX 11 11 VAL B 75 VAL B 85 1 11 HELIX 12 12 THR B 208 SER B 217 1 10 HELIX 13 13 LEU B 218 VAL B 221 5 4 HELIX 14 14 GLU B 223 GLU B 225 5 3 HELIX 15 15 ASN B 226 SER B 235 1 10 HELIX 16 16 LYS B 236 LYS B 240 1 5 HELIX 17 17 SER B 246 GLY B 260 1 15 HELIX 18 18 ASP B 261 ALA B 278 1 18 SHEET 1 A 4 THR A 123 VAL A 126 0 SHEET 2 A 4 SER A 170 VAL A 173 -1 N VAL A 173 O THR A 123 SHEET 3 A 4 ALA A 94 LYS A 100 -1 N ARG A 97 O SER A 170 SHEET 4 A 4 PHE A 40 TRP A 47 -1 N TRP A 47 O ALA A 94 SHEET 1 B 4 ALA A 102 VAL A 104 0 SHEET 2 B 4 HIS A 158 ASN A 162 -1 N ASN A 162 O ALA A 102 SHEET 3 B 4 ALA A 133 ASN A 137 -1 N SER A 136 O SER A 159 SHEET 4 B 4 THR A 140 ILE A 142 -1 N ILE A 142 O HIS A 135 SHEET 1 C 2 HIS A 4 LYS A 8 0 SHEET 2 C 2 GLU A 148 PHE A 151 -1 N PHE A 151 O HIS A 4 SHEET 1 D 4 PHE B 121 VAL B 126 0 SHEET 2 D 4 SER B 170 PHE B 175 -1 N PHE B 175 O PHE B 121 SHEET 3 D 4 MET B 93 LYS B 100 -1 N ARG B 97 O SER B 170 SHEET 4 D 4 PHE B 40 TRP B 47 -1 N TRP B 47 O ALA B 94 SHEET 1 E 4 ALA B 102 VAL B 104 0 SHEET 2 E 4 HIS B 158 ASN B 162 -1 N ASN B 162 O ALA B 102 SHEET 3 E 4 ALA B 133 ASN B 137 -1 N SER B 136 O SER B 159 SHEET 4 E 4 THR B 140 ILE B 142 -1 N ILE B 142 O HIS B 135 LINK FE FE2 A 800 OD1 ASP A 109 1555 1555 2.34 LINK FE FE2 A 800 NE2 HIS A 158 1555 1555 2.27 LINK FE FE2 A 800 NE2 HIS A 107 1555 1555 2.40 LINK FE FE2 B 801 NE2 HIS B 158 1555 1555 2.10 LINK FE FE2 B 801 OD1 ASP B 109 1555 1555 2.32 LINK FE FE2 B 801 NE2 HIS B 107 1555 1555 2.20 SITE 1 AC1 3 HIS A 107 ASP A 109 HIS A 158 SITE 1 AC2 3 HIS B 107 ASP B 109 HIS B 158 SITE 1 AC3 7 ARG A 97 LEU A 99 PHE A 124 HIS A 135 SITE 2 AC3 7 ALA A 160 ARG A 168 HOH A2115 CRYST1 72.780 72.780 224.900 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013740 0.007933 0.000000 0.00000 SCALE2 0.000000 0.015866 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004446 0.00000 MTRIX1 1 0.530268 0.823935 -0.199867 3.50750 1 MTRIX2 1 0.843706 -0.489595 0.220127 41.53370 1 MTRIX3 1 0.083517 -0.285355 -0.954776 76.28830 1