data_1EBB # _entry.id 1EBB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1EBB pdb_00001ebb 10.2210/pdb1ebb/pdb PDBE EBI-8386 ? ? WWPDB D_1290008386 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EBB _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2001-07-24 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rigden, D.J.' 1 'Jedrzejas, M.J.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Structure and Mechanism of Action of a Cofactor-Dependent Phosphoglycerate Mutase Homolog from Bacillus Stearothermophilus with Broad Specificity Phosphatase Activity. ; J.Mol.Biol. 315 1129 ? 2002 JMOBAK UK 0022-2836 0070 ? 11827481 10.1006/JMBI.2001.5290 1 'A Cofactor-Dependent Phosphoglycerate Mutase Homolog from Bacillus Stearothermophilus is Actually a Broad Specificity Phosphatase' 'Protein Sci.' 10 1835 ? 2001 PRCIEI US 0961-8368 0795 ? 11514674 10.1110/PS.15701 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rigden, D.J.' 1 ? primary 'Mello, L.V.' 2 ? primary 'Setlow, P.' 3 ? primary 'Jedrzejas, M.J.' 4 ? 1 'Rigden, D.J.' 5 ? 1 'Bagyan, I.' 6 ? 1 'Lamani, E.' 7 ? 1 'Setlow, P.' 8 ? 1 'Jedrzejas, M.J.' 9 ? # _cell.entry_id 1EBB _cell.length_a 55.200 _cell.length_b 55.200 _cell.length_c 164.430 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EBB _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man PHOSPHATASE 23062.006 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 5 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 4 water nat water 18.015 33 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name YHFR # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ATTLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVELAAIYTSTSGRALETAEIVRGGRLIPIYQDERL REIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAA FKDTPLDHLWSPPYMYGTSVTIIEVDGGTFHVAVEGDVSHIE ; _entity_poly.pdbx_seq_one_letter_code_can ;ATTLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVELAAIYTSTSGRALETAEIVRGGRLIPIYQDERL REIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAA FKDTPLDHLWSPPYMYGTSVTIIEVDGGTFHVAVEGDVSHIE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 THR n 1 3 THR n 1 4 LEU n 1 5 TYR n 1 6 LEU n 1 7 THR n 1 8 ARG n 1 9 HIS n 1 10 GLY n 1 11 GLU n 1 12 THR n 1 13 LYS n 1 14 TRP n 1 15 ASN n 1 16 VAL n 1 17 GLU n 1 18 ARG n 1 19 ARG n 1 20 MET n 1 21 GLN n 1 22 GLY n 1 23 TRP n 1 24 GLN n 1 25 ASP n 1 26 SER n 1 27 PRO n 1 28 LEU n 1 29 THR n 1 30 GLU n 1 31 LYS n 1 32 GLY n 1 33 ARG n 1 34 GLN n 1 35 ASP n 1 36 ALA n 1 37 MET n 1 38 ARG n 1 39 LEU n 1 40 GLY n 1 41 LYS n 1 42 ARG n 1 43 LEU n 1 44 GLU n 1 45 ALA n 1 46 VAL n 1 47 GLU n 1 48 LEU n 1 49 ALA n 1 50 ALA n 1 51 ILE n 1 52 TYR n 1 53 THR n 1 54 SER n 1 55 THR n 1 56 SER n 1 57 GLY n 1 58 ARG n 1 59 ALA n 1 60 LEU n 1 61 GLU n 1 62 THR n 1 63 ALA n 1 64 GLU n 1 65 ILE n 1 66 VAL n 1 67 ARG n 1 68 GLY n 1 69 GLY n 1 70 ARG n 1 71 LEU n 1 72 ILE n 1 73 PRO n 1 74 ILE n 1 75 TYR n 1 76 GLN n 1 77 ASP n 1 78 GLU n 1 79 ARG n 1 80 LEU n 1 81 ARG n 1 82 GLU n 1 83 ILE n 1 84 HIS n 1 85 LEU n 1 86 GLY n 1 87 ASP n 1 88 TRP n 1 89 GLU n 1 90 GLY n 1 91 LYS n 1 92 THR n 1 93 HIS n 1 94 ASP n 1 95 GLU n 1 96 ILE n 1 97 ARG n 1 98 GLN n 1 99 MET n 1 100 ASP n 1 101 PRO n 1 102 ILE n 1 103 ALA n 1 104 PHE n 1 105 ASP n 1 106 HIS n 1 107 PHE n 1 108 TRP n 1 109 GLN n 1 110 ALA n 1 111 PRO n 1 112 HIS n 1 113 LEU n 1 114 TYR n 1 115 ALA n 1 116 PRO n 1 117 GLN n 1 118 ARG n 1 119 GLY n 1 120 GLU n 1 121 ARG n 1 122 PHE n 1 123 CYS n 1 124 ASP n 1 125 VAL n 1 126 GLN n 1 127 GLN n 1 128 ARG n 1 129 ALA n 1 130 LEU n 1 131 GLU n 1 132 ALA n 1 133 VAL n 1 134 GLN n 1 135 SER n 1 136 ILE n 1 137 VAL n 1 138 ASP n 1 139 ARG n 1 140 HIS n 1 141 GLU n 1 142 GLY n 1 143 GLU n 1 144 THR n 1 145 VAL n 1 146 LEU n 1 147 ILE n 1 148 VAL n 1 149 THR n 1 150 HIS n 1 151 GLY n 1 152 VAL n 1 153 VAL n 1 154 LEU n 1 155 LYS n 1 156 THR n 1 157 LEU n 1 158 MET n 1 159 ALA n 1 160 ALA n 1 161 PHE n 1 162 LYS n 1 163 ASP n 1 164 THR n 1 165 PRO n 1 166 LEU n 1 167 ASP n 1 168 HIS n 1 169 LEU n 1 170 TRP n 1 171 SER n 1 172 PRO n 1 173 PRO n 1 174 TYR n 1 175 MET n 1 176 TYR n 1 177 GLY n 1 178 THR n 1 179 SER n 1 180 VAL n 1 181 THR n 1 182 ILE n 1 183 ILE n 1 184 GLU n 1 185 VAL n 1 186 ASP n 1 187 GLY n 1 188 GLY n 1 189 THR n 1 190 PHE n 1 191 HIS n 1 192 VAL n 1 193 ALA n 1 194 VAL n 1 195 GLU n 1 196 GLY n 1 197 ASP n 1 198 VAL n 1 199 SER n 1 200 HIS n 1 201 ILE n 1 202 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'BACILLUS STEAROTHERMOPHILUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1422 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PS3297 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1EBB 1 ? ? 1EBB ? 2 UNP Q9ALU0 1 ? ? Q9ALU0 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1EBB A 1 ? 6 ? 1EBB 2 ? 7 ? 2 7 2 2 1EBB A 7 ? 201 ? Q9ALU0 1 ? 195 ? 8 202 3 1 1EBB A 202 ? 202 ? 1EBB 203 ? 203 ? 203 203 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1EBB _struct_ref_seq_dif.mon_id GLN _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 109 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9ALU0 _struct_ref_seq_dif.db_mon_id ASN _struct_ref_seq_dif.pdbx_seq_db_seq_num 103 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 110 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1EBB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.72 _exptl_crystal.density_percent_sol 54 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '45 % POLYETHYLENE GLYCOL 4,000, 120 MM LITHIUM SULFATE, 20 MM TRIS.HCL BUFFER, PH 8.0' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type OXFORD _diffrn_detector.pdbx_collection_date 2001-01-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength 1.1 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1EBB _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 45.830 _reflns.d_resolution_high 2.300 _reflns.number_obs 11896 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.10900 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.5000 _reflns.B_iso_Wilson_estimate 33.2 _reflns.pdbx_redundancy 12.200 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.40 _reflns_shell.percent_possible_all 98.8 _reflns_shell.Rmerge_I_obs 0.70600 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.300 _reflns_shell.pdbx_redundancy 11.30 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1EBB _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 11896 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1587969.35 _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.83 _refine.ls_d_res_high 2.3 _refine.ls_percent_reflns_obs 99.1 _refine.ls_R_factor_obs 0.230 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.230 _refine.ls_R_factor_R_free 0.263 _refine.ls_R_factor_R_free_error 0.011 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 599 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 54.0 _refine.aniso_B[1][1] 9.05 _refine.aniso_B[2][2] 12.53 _refine.aniso_B[3][3] -21.58 _refine.aniso_B[1][2] 0 _refine.aniso_B[1][3] 0 _refine.aniso_B[2][3] 0 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.365671 _refine.solvent_model_param_bsol 43.5009 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRIES 1TIP, 5PGM +HOMOLOGY MODEL' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values MLF _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1EBB _refine_analyze.Luzzati_coordinate_error_obs 0.31 _refine_analyze.Luzzati_sigma_a_obs 0.40 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.36 _refine_analyze.Luzzati_sigma_a_free 0.36 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1623 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 1699 _refine_hist.d_res_high 2.3 _refine_hist.d_res_low 45.83 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.80 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 2.07 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 3.21 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 3.58 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 5.20 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.40 _refine_ls_shell.number_reflns_R_work 1306 _refine_ls_shell.R_factor_R_work 0.337 _refine_ls_shell.percent_reflns_obs 96.7 _refine_ls_shell.R_factor_R_free 0.369 _refine_ls_shell.R_factor_R_free_error 0.041 _refine_ls_shell.percent_reflns_R_free 5.8 _refine_ls_shell.number_reflns_R_free 80 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 4 GOL_XPLOR_PAR.TXT GOL_XPLOR_TOP.TXT # _struct.entry_id 1EBB _struct.title 'Bacillus stearothermophilus YhfR' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EBB _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, BROAD SPECIFICITY PHOSPHATASE; DPGM HOMOLOG' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 12 ? GLU A 17 ? THR A 13 GLU A 18 1 ? 6 HELX_P HELX_P2 2 THR A 29 ? LEU A 43 ? THR A 30 LEU A 44 1 ? 15 HELX_P HELX_P3 3 SER A 56 ? GLY A 68 ? SER A 57 GLY A 69 1 ? 13 HELX_P HELX_P4 4 GLU A 78 ? ARG A 81 ? GLU A 79 ARG A 82 5 ? 4 HELX_P HELX_P5 5 LEU A 85 ? GLU A 89 ? LEU A 86 GLU A 90 5 ? 5 HELX_P HELX_P6 6 THR A 92 ? GLN A 98 ? THR A 93 GLN A 99 1 ? 7 HELX_P HELX_P7 7 ASP A 100 ? ALA A 110 ? ASP A 101 ALA A 111 1 ? 11 HELX_P HELX_P8 8 PRO A 111 ? TYR A 114 ? PRO A 112 TYR A 115 5 ? 4 HELX_P HELX_P9 9 ARG A 121 ? ARG A 139 ? ARG A 122 ARG A 140 1 ? 19 HELX_P HELX_P10 10 HIS A 150 ? ASP A 163 ? HIS A 151 ASP A 164 1 ? 14 HELX_P HELX_P11 11 PRO A 165 ? LEU A 169 ? PRO A 166 LEU A 170 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 172 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 173 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 173 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 174 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.90 # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ILE A 74 ? GLN A 76 ? ILE A 75 GLN A 77 AA 2 ALA A 50 ? THR A 53 ? ALA A 51 THR A 54 AA 3 THR A 144 ? THR A 149 ? THR A 145 THR A 150 AA 4 THR A 2 ? ARG A 8 ? THR A 3 ARG A 9 AA 5 VAL A 180 ? ASP A 186 ? VAL A 181 ASP A 187 AA 6 THR A 189 ? ASP A 197 ? THR A 190 ASP A 198 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TYR A 75 ? N TYR A 76 O ILE A 51 ? O ILE A 52 AA 2 3 N TYR A 52 ? N TYR A 53 O LEU A 146 ? O LEU A 147 AA 3 4 N VAL A 145 ? N VAL A 146 O THR A 3 ? O THR A 4 AA 4 5 N LEU A 6 ? N LEU A 7 O THR A 181 ? O THR A 182 AA 5 6 N ASP A 186 ? N ASP A 187 O THR A 189 ? O THR A 190 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 300 ? 7 'BINDING SITE FOR RESIDUE SO4 A 300' AC2 Software A SO4 301 ? 5 'BINDING SITE FOR RESIDUE SO4 A 301' AC3 Software A SO4 302 ? 5 'BINDING SITE FOR RESIDUE SO4 A 302' AC4 Software A SO4 303 ? 3 'BINDING SITE FOR RESIDUE SO4 A 303' AC5 Software A SO4 304 ? 6 'BINDING SITE FOR RESIDUE SO4 A 304' AC6 Software A GOL 400 ? 7 'BINDING SITE FOR RESIDUE GOL A 400' AC7 Software A GOL 401 ? 7 'BINDING SITE FOR RESIDUE GOL A 401' AC8 Software A GOL 402 ? 6 'BINDING SITE FOR RESIDUE GOL A 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ARG A 33 ? ARG A 34 . ? 3_535 ? 2 AC1 7 MET A 99 ? MET A 100 . ? 1_555 ? 3 AC1 7 ASP A 100 ? ASP A 101 . ? 1_555 ? 4 AC1 7 PRO A 101 ? PRO A 102 . ? 1_555 ? 5 AC1 7 ILE A 102 ? ILE A 103 . ? 1_555 ? 6 AC1 7 ALA A 103 ? ALA A 104 . ? 1_555 ? 7 AC1 7 HOH J . ? HOH A 2033 . ? 1_555 ? 8 AC2 5 ALA A 1 ? ALA A 2 . ? 1_555 ? 9 AC2 5 TRP A 23 ? TRP A 24 . ? 6_534 ? 10 AC2 5 ARG A 81 ? ARG A 82 . ? 6_534 ? 11 AC2 5 GLY A 142 ? GLY A 143 . ? 1_555 ? 12 AC2 5 SO4 D . ? SO4 A 302 . ? 1_555 ? 13 AC3 5 THR A 2 ? THR A 3 . ? 1_555 ? 14 AC3 5 THR A 3 ? THR A 4 . ? 1_555 ? 15 AC3 5 GLY A 142 ? GLY A 143 . ? 1_555 ? 16 AC3 5 GLU A 143 ? GLU A 144 . ? 1_555 ? 17 AC3 5 SO4 C . ? SO4 A 301 . ? 1_555 ? 18 AC4 3 TYR A 5 ? TYR A 6 . ? 1_555 ? 19 AC4 3 ARG A 42 ? ARG A 43 . ? 1_555 ? 20 AC4 3 VAL A 46 ? VAL A 47 . ? 1_555 ? 21 AC5 6 ASP A 87 ? ASP A 88 . ? 1_555 ? 22 AC5 6 PRO A 116 ? PRO A 117 . ? 1_555 ? 23 AC5 6 GLN A 117 ? GLN A 118 . ? 1_555 ? 24 AC5 6 ARG A 118 ? ARG A 119 . ? 1_555 ? 25 AC5 6 GLY A 119 ? GLY A 120 . ? 1_555 ? 26 AC5 6 HOH J . ? HOH A 2018 . ? 1_555 ? 27 AC6 7 ARG A 8 ? ARG A 9 . ? 1_555 ? 28 AC6 7 HIS A 9 ? HIS A 10 . ? 1_555 ? 29 AC6 7 ASN A 15 ? ASN A 16 . ? 1_555 ? 30 AC6 7 GLN A 21 ? GLN A 22 . ? 1_555 ? 31 AC6 7 ARG A 58 ? ARG A 59 . ? 1_555 ? 32 AC6 7 GLU A 82 ? GLU A 83 . ? 1_555 ? 33 AC6 7 GOL I . ? GOL A 402 . ? 1_555 ? 34 AC7 7 GLN A 126 ? GLN A 127 . ? 7_735 ? 35 AC7 7 ALA A 159 ? ALA A 160 . ? 7_735 ? 36 AC7 7 THR A 164 ? THR A 165 . ? 7_735 ? 37 AC7 7 PRO A 165 ? PRO A 166 . ? 1_555 ? 38 AC7 7 LEU A 166 ? LEU A 167 . ? 7_735 ? 39 AC7 7 LEU A 166 ? LEU A 167 . ? 1_555 ? 40 AC7 7 ASP A 167 ? ASP A 168 . ? 1_555 ? 41 AC8 6 ARG A 19 ? ARG A 20 . ? 1_555 ? 42 AC8 6 MET A 20 ? MET A 21 . ? 1_555 ? 43 AC8 6 GLN A 21 ? GLN A 22 . ? 1_555 ? 44 AC8 6 GLY A 22 ? GLY A 23 . ? 1_555 ? 45 AC8 6 GLU A 82 ? GLU A 83 . ? 1_555 ? 46 AC8 6 GOL G . ? GOL A 400 . ? 1_555 ? # _database_PDB_matrix.entry_id 1EBB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1EBB _atom_sites.fract_transf_matrix[1][1] 0.018116 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018116 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006082 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 2 2 ALA ALA A . n A 1 2 THR 2 3 3 THR THR A . n A 1 3 THR 3 4 4 THR THR A . n A 1 4 LEU 4 5 5 LEU LEU A . n A 1 5 TYR 5 6 6 TYR TYR A . n A 1 6 LEU 6 7 7 LEU LEU A . n A 1 7 THR 7 8 8 THR THR A . n A 1 8 ARG 8 9 9 ARG ARG A . n A 1 9 HIS 9 10 10 HIS HIS A . n A 1 10 GLY 10 11 11 GLY GLY A . n A 1 11 GLU 11 12 12 GLU GLU A . n A 1 12 THR 12 13 13 THR THR A . n A 1 13 LYS 13 14 14 LYS LYS A . n A 1 14 TRP 14 15 15 TRP TRP A . n A 1 15 ASN 15 16 16 ASN ASN A . n A 1 16 VAL 16 17 17 VAL VAL A . n A 1 17 GLU 17 18 18 GLU GLU A . n A 1 18 ARG 18 19 19 ARG ARG A . n A 1 19 ARG 19 20 20 ARG ARG A . n A 1 20 MET 20 21 21 MET MET A . n A 1 21 GLN 21 22 22 GLN GLN A . n A 1 22 GLY 22 23 23 GLY GLY A . n A 1 23 TRP 23 24 24 TRP TRP A . n A 1 24 GLN 24 25 25 GLN GLN A . n A 1 25 ASP 25 26 26 ASP ASP A . n A 1 26 SER 26 27 27 SER SER A . n A 1 27 PRO 27 28 28 PRO PRO A . n A 1 28 LEU 28 29 29 LEU LEU A . n A 1 29 THR 29 30 30 THR THR A . n A 1 30 GLU 30 31 31 GLU GLU A . n A 1 31 LYS 31 32 32 LYS LYS A . n A 1 32 GLY 32 33 33 GLY GLY A . n A 1 33 ARG 33 34 34 ARG ARG A . n A 1 34 GLN 34 35 35 GLN GLN A . n A 1 35 ASP 35 36 36 ASP ASP A . n A 1 36 ALA 36 37 37 ALA ALA A . n A 1 37 MET 37 38 38 MET MET A . n A 1 38 ARG 38 39 39 ARG ARG A . n A 1 39 LEU 39 40 40 LEU LEU A . n A 1 40 GLY 40 41 41 GLY GLY A . n A 1 41 LYS 41 42 42 LYS LYS A . n A 1 42 ARG 42 43 43 ARG ARG A . n A 1 43 LEU 43 44 44 LEU LEU A . n A 1 44 GLU 44 45 45 GLU GLU A . n A 1 45 ALA 45 46 46 ALA ALA A . n A 1 46 VAL 46 47 47 VAL VAL A . n A 1 47 GLU 47 48 48 GLU GLU A . n A 1 48 LEU 48 49 49 LEU LEU A . n A 1 49 ALA 49 50 50 ALA ALA A . n A 1 50 ALA 50 51 51 ALA ALA A . n A 1 51 ILE 51 52 52 ILE ILE A . n A 1 52 TYR 52 53 53 TYR TYR A . n A 1 53 THR 53 54 54 THR THR A . n A 1 54 SER 54 55 55 SER SER A . n A 1 55 THR 55 56 56 THR THR A . n A 1 56 SER 56 57 57 SER SER A . n A 1 57 GLY 57 58 58 GLY GLY A . n A 1 58 ARG 58 59 59 ARG ARG A . n A 1 59 ALA 59 60 60 ALA ALA A . n A 1 60 LEU 60 61 61 LEU LEU A . n A 1 61 GLU 61 62 62 GLU GLU A . n A 1 62 THR 62 63 63 THR THR A . n A 1 63 ALA 63 64 64 ALA ALA A . n A 1 64 GLU 64 65 65 GLU GLU A . n A 1 65 ILE 65 66 66 ILE ILE A . n A 1 66 VAL 66 67 67 VAL VAL A . n A 1 67 ARG 67 68 68 ARG ARG A . n A 1 68 GLY 68 69 69 GLY GLY A . n A 1 69 GLY 69 70 70 GLY GLY A . n A 1 70 ARG 70 71 71 ARG ARG A . n A 1 71 LEU 71 72 72 LEU LEU A . n A 1 72 ILE 72 73 73 ILE ILE A . n A 1 73 PRO 73 74 74 PRO PRO A . n A 1 74 ILE 74 75 75 ILE ILE A . n A 1 75 TYR 75 76 76 TYR TYR A . n A 1 76 GLN 76 77 77 GLN GLN A . n A 1 77 ASP 77 78 78 ASP ASP A . n A 1 78 GLU 78 79 79 GLU GLU A . n A 1 79 ARG 79 80 80 ARG ARG A . n A 1 80 LEU 80 81 81 LEU LEU A . n A 1 81 ARG 81 82 82 ARG ARG A . n A 1 82 GLU 82 83 83 GLU GLU A . n A 1 83 ILE 83 84 84 ILE ILE A . n A 1 84 HIS 84 85 85 HIS HIS A . n A 1 85 LEU 85 86 86 LEU LEU A . n A 1 86 GLY 86 87 87 GLY GLY A . n A 1 87 ASP 87 88 88 ASP ASP A . n A 1 88 TRP 88 89 89 TRP TRP A . n A 1 89 GLU 89 90 90 GLU GLU A . n A 1 90 GLY 90 91 91 GLY GLY A . n A 1 91 LYS 91 92 92 LYS LYS A . n A 1 92 THR 92 93 93 THR THR A . n A 1 93 HIS 93 94 94 HIS HIS A . n A 1 94 ASP 94 95 95 ASP ASP A . n A 1 95 GLU 95 96 96 GLU GLU A . n A 1 96 ILE 96 97 97 ILE ILE A . n A 1 97 ARG 97 98 98 ARG ARG A . n A 1 98 GLN 98 99 99 GLN GLN A . n A 1 99 MET 99 100 100 MET MET A . n A 1 100 ASP 100 101 101 ASP ASP A . n A 1 101 PRO 101 102 102 PRO PRO A . n A 1 102 ILE 102 103 103 ILE ILE A . n A 1 103 ALA 103 104 104 ALA ALA A . n A 1 104 PHE 104 105 105 PHE PHE A . n A 1 105 ASP 105 106 106 ASP ASP A . n A 1 106 HIS 106 107 107 HIS HIS A . n A 1 107 PHE 107 108 108 PHE PHE A . n A 1 108 TRP 108 109 109 TRP TRP A . n A 1 109 GLN 109 110 110 GLN GLN A . n A 1 110 ALA 110 111 111 ALA ALA A . n A 1 111 PRO 111 112 112 PRO PRO A . n A 1 112 HIS 112 113 113 HIS HIS A . n A 1 113 LEU 113 114 114 LEU LEU A . n A 1 114 TYR 114 115 115 TYR TYR A . n A 1 115 ALA 115 116 116 ALA ALA A . n A 1 116 PRO 116 117 117 PRO PRO A . n A 1 117 GLN 117 118 118 GLN GLN A . n A 1 118 ARG 118 119 119 ARG ARG A . n A 1 119 GLY 119 120 120 GLY GLY A . n A 1 120 GLU 120 121 121 GLU GLU A . n A 1 121 ARG 121 122 122 ARG ARG A . n A 1 122 PHE 122 123 123 PHE PHE A . n A 1 123 CYS 123 124 124 CYS CYS A . n A 1 124 ASP 124 125 125 ASP ASP A . n A 1 125 VAL 125 126 126 VAL VAL A . n A 1 126 GLN 126 127 127 GLN GLN A . n A 1 127 GLN 127 128 128 GLN GLN A . n A 1 128 ARG 128 129 129 ARG ARG A . n A 1 129 ALA 129 130 130 ALA ALA A . n A 1 130 LEU 130 131 131 LEU LEU A . n A 1 131 GLU 131 132 132 GLU GLU A . n A 1 132 ALA 132 133 133 ALA ALA A . n A 1 133 VAL 133 134 134 VAL VAL A . n A 1 134 GLN 134 135 135 GLN GLN A . n A 1 135 SER 135 136 136 SER SER A . n A 1 136 ILE 136 137 137 ILE ILE A . n A 1 137 VAL 137 138 138 VAL VAL A . n A 1 138 ASP 138 139 139 ASP ASP A . n A 1 139 ARG 139 140 140 ARG ARG A . n A 1 140 HIS 140 141 141 HIS HIS A . n A 1 141 GLU 141 142 142 GLU GLU A . n A 1 142 GLY 142 143 143 GLY GLY A . n A 1 143 GLU 143 144 144 GLU GLU A . n A 1 144 THR 144 145 145 THR THR A . n A 1 145 VAL 145 146 146 VAL VAL A . n A 1 146 LEU 146 147 147 LEU LEU A . n A 1 147 ILE 147 148 148 ILE ILE A . n A 1 148 VAL 148 149 149 VAL VAL A . n A 1 149 THR 149 150 150 THR THR A . n A 1 150 HIS 150 151 151 HIS HIS A . n A 1 151 GLY 151 152 152 GLY GLY A . n A 1 152 VAL 152 153 153 VAL VAL A . n A 1 153 VAL 153 154 154 VAL VAL A . n A 1 154 LEU 154 155 155 LEU LEU A . n A 1 155 LYS 155 156 156 LYS LYS A . n A 1 156 THR 156 157 157 THR THR A . n A 1 157 LEU 157 158 158 LEU LEU A . n A 1 158 MET 158 159 159 MET MET A . n A 1 159 ALA 159 160 160 ALA ALA A . n A 1 160 ALA 160 161 161 ALA ALA A . n A 1 161 PHE 161 162 162 PHE PHE A . n A 1 162 LYS 162 163 163 LYS LYS A . n A 1 163 ASP 163 164 164 ASP ASP A . n A 1 164 THR 164 165 165 THR THR A . n A 1 165 PRO 165 166 166 PRO PRO A . n A 1 166 LEU 166 167 167 LEU LEU A . n A 1 167 ASP 167 168 168 ASP ASP A . n A 1 168 HIS 168 169 169 HIS HIS A . n A 1 169 LEU 169 170 170 LEU LEU A . n A 1 170 TRP 170 171 171 TRP TRP A . n A 1 171 SER 171 172 172 SER SER A . n A 1 172 PRO 172 173 173 PRO PRO A . n A 1 173 PRO 173 174 174 PRO PRO A . n A 1 174 TYR 174 175 175 TYR TYR A . n A 1 175 MET 175 176 176 MET MET A . n A 1 176 TYR 176 177 177 TYR TYR A . n A 1 177 GLY 177 178 178 GLY GLY A . n A 1 178 THR 178 179 179 THR THR A . n A 1 179 SER 179 180 180 SER SER A . n A 1 180 VAL 180 181 181 VAL VAL A . n A 1 181 THR 181 182 182 THR THR A . n A 1 182 ILE 182 183 183 ILE ILE A . n A 1 183 ILE 183 184 184 ILE ILE A . n A 1 184 GLU 184 185 185 GLU GLU A . n A 1 185 VAL 185 186 186 VAL VAL A . n A 1 186 ASP 186 187 187 ASP ASP A . n A 1 187 GLY 187 188 188 GLY GLY A . n A 1 188 GLY 188 189 189 GLY GLY A . n A 1 189 THR 189 190 190 THR THR A . n A 1 190 PHE 190 191 191 PHE PHE A . n A 1 191 HIS 191 192 192 HIS HIS A . n A 1 192 VAL 192 193 193 VAL VAL A . n A 1 193 ALA 193 194 194 ALA ALA A . n A 1 194 VAL 194 195 195 VAL VAL A . n A 1 195 GLU 195 196 196 GLU GLU A . n A 1 196 GLY 196 197 197 GLY GLY A . n A 1 197 ASP 197 198 198 ASP ASP A . n A 1 198 VAL 198 199 199 VAL VAL A . n A 1 199 SER 199 200 200 SER SER A . n A 1 200 HIS 200 201 201 HIS HIS A . n A 1 201 ILE 201 202 202 ILE ILE A . n A 1 202 GLU 202 203 203 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 300 300 SO4 SO4 A . C 2 SO4 1 301 301 SO4 SO4 A . D 2 SO4 1 302 302 SO4 SO4 A . E 2 SO4 1 303 303 SO4 SO4 A . F 2 SO4 1 304 304 SO4 SO4 A . G 3 GOL 1 400 400 GOL GOL A . H 3 GOL 1 401 401 GOL GOL A . I 3 GOL 1 402 402 GOL GOL A . J 4 HOH 1 2001 2001 HOH HOH A . J 4 HOH 2 2002 2002 HOH HOH A . J 4 HOH 3 2003 2003 HOH HOH A . J 4 HOH 4 2004 2004 HOH HOH A . J 4 HOH 5 2005 2005 HOH HOH A . J 4 HOH 6 2006 2006 HOH HOH A . J 4 HOH 7 2007 2007 HOH HOH A . J 4 HOH 8 2008 2008 HOH HOH A . J 4 HOH 9 2009 2009 HOH HOH A . J 4 HOH 10 2010 2010 HOH HOH A . J 4 HOH 11 2011 2011 HOH HOH A . J 4 HOH 12 2012 2012 HOH HOH A . J 4 HOH 13 2013 2013 HOH HOH A . J 4 HOH 14 2014 2014 HOH HOH A . J 4 HOH 15 2015 2015 HOH HOH A . J 4 HOH 16 2016 2016 HOH HOH A . J 4 HOH 17 2017 2017 HOH HOH A . J 4 HOH 18 2018 2018 HOH HOH A . J 4 HOH 19 2019 2019 HOH HOH A . J 4 HOH 20 2020 2020 HOH HOH A . J 4 HOH 21 2021 2021 HOH HOH A . J 4 HOH 22 2022 2022 HOH HOH A . J 4 HOH 23 2023 2023 HOH HOH A . J 4 HOH 24 2024 2024 HOH HOH A . J 4 HOH 25 2025 2025 HOH HOH A . J 4 HOH 26 2026 2026 HOH HOH A . J 4 HOH 27 2027 2027 HOH HOH A . J 4 HOH 28 2028 2028 HOH HOH A . J 4 HOH 29 2029 2029 HOH HOH A . J 4 HOH 30 2030 2030 HOH HOH A . J 4 HOH 31 2031 2031 HOH HOH A . J 4 HOH 32 2032 2032 HOH HOH A . J 4 HOH 33 2033 2033 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2002-02-11 2 'Structure model' 1 1 2011-09-07 3 'Structure model' 1 2 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Non-polymer description' 5 2 'Structure model' Other 6 2 'Structure model' 'Refinement description' 7 2 'Structure model' 'Version format compliance' 8 3 'Structure model' 'Data collection' 9 3 'Structure model' 'Database references' 10 3 'Structure model' 'Derived calculations' 11 3 'Structure model' Other 12 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_sf' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_entry_details.entry_id 1EBB _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE SWISSPROT ENTRY Q9ALU0 IDENTIFIES THIS PROTEIN AS A PHOSPHOGLYCERATE MUTASE. THE PROTEIN STUDIED IS A HOMOLOG OF PHOSPHOGLYCERATE MUTASE BUT HAS NO MUTASE ACTIVITY. THE MOLECULE DOES SHOW PHOSPHATASE ACTIVITY. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 82 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 NH2 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ARG _pdbx_validate_close_contact.auth_seq_id_2 129 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 22 ? ? -97.40 -74.18 2 1 MET A 100 ? ? -97.16 -61.96 3 1 THR A 150 ? ? -133.37 -152.62 4 1 SER A 200 ? ? -57.96 -91.94 5 1 HIS A 201 ? ? -20.67 -36.32 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 PHE N N N N 264 PHE CA C N S 265 PHE C C N N 266 PHE O O N N 267 PHE CB C N N 268 PHE CG C Y N 269 PHE CD1 C Y N 270 PHE CD2 C Y N 271 PHE CE1 C Y N 272 PHE CE2 C Y N 273 PHE CZ C Y N 274 PHE OXT O N N 275 PHE H H N N 276 PHE H2 H N N 277 PHE HA H N N 278 PHE HB2 H N N 279 PHE HB3 H N N 280 PHE HD1 H N N 281 PHE HD2 H N N 282 PHE HE1 H N N 283 PHE HE2 H N N 284 PHE HZ H N N 285 PHE HXT H N N 286 PRO N N N N 287 PRO CA C N S 288 PRO C C N N 289 PRO O O N N 290 PRO CB C N N 291 PRO CG C N N 292 PRO CD C N N 293 PRO OXT O N N 294 PRO H H N N 295 PRO HA H N N 296 PRO HB2 H N N 297 PRO HB3 H N N 298 PRO HG2 H N N 299 PRO HG3 H N N 300 PRO HD2 H N N 301 PRO HD3 H N N 302 PRO HXT H N N 303 SER N N N N 304 SER CA C N S 305 SER C C N N 306 SER O O N N 307 SER CB C N N 308 SER OG O N N 309 SER OXT O N N 310 SER H H N N 311 SER H2 H N N 312 SER HA H N N 313 SER HB2 H N N 314 SER HB3 H N N 315 SER HG H N N 316 SER HXT H N N 317 SO4 S S N N 318 SO4 O1 O N N 319 SO4 O2 O N N 320 SO4 O3 O N N 321 SO4 O4 O N N 322 THR N N N N 323 THR CA C N S 324 THR C C N N 325 THR O O N N 326 THR CB C N R 327 THR OG1 O N N 328 THR CG2 C N N 329 THR OXT O N N 330 THR H H N N 331 THR H2 H N N 332 THR HA H N N 333 THR HB H N N 334 THR HG1 H N N 335 THR HG21 H N N 336 THR HG22 H N N 337 THR HG23 H N N 338 THR HXT H N N 339 TRP N N N N 340 TRP CA C N S 341 TRP C C N N 342 TRP O O N N 343 TRP CB C N N 344 TRP CG C Y N 345 TRP CD1 C Y N 346 TRP CD2 C Y N 347 TRP NE1 N Y N 348 TRP CE2 C Y N 349 TRP CE3 C Y N 350 TRP CZ2 C Y N 351 TRP CZ3 C Y N 352 TRP CH2 C Y N 353 TRP OXT O N N 354 TRP H H N N 355 TRP H2 H N N 356 TRP HA H N N 357 TRP HB2 H N N 358 TRP HB3 H N N 359 TRP HD1 H N N 360 TRP HE1 H N N 361 TRP HE3 H N N 362 TRP HZ2 H N N 363 TRP HZ3 H N N 364 TRP HH2 H N N 365 TRP HXT H N N 366 TYR N N N N 367 TYR CA C N S 368 TYR C C N N 369 TYR O O N N 370 TYR CB C N N 371 TYR CG C Y N 372 TYR CD1 C Y N 373 TYR CD2 C Y N 374 TYR CE1 C Y N 375 TYR CE2 C Y N 376 TYR CZ C Y N 377 TYR OH O N N 378 TYR OXT O N N 379 TYR H H N N 380 TYR H2 H N N 381 TYR HA H N N 382 TYR HB2 H N N 383 TYR HB3 H N N 384 TYR HD1 H N N 385 TYR HD2 H N N 386 TYR HE1 H N N 387 TYR HE2 H N N 388 TYR HH H N N 389 TYR HXT H N N 390 VAL N N N N 391 VAL CA C N S 392 VAL C C N N 393 VAL O O N N 394 VAL CB C N N 395 VAL CG1 C N N 396 VAL CG2 C N N 397 VAL OXT O N N 398 VAL H H N N 399 VAL H2 H N N 400 VAL HA H N N 401 VAL HB H N N 402 VAL HG11 H N N 403 VAL HG12 H N N 404 VAL HG13 H N N 405 VAL HG21 H N N 406 VAL HG22 H N N 407 VAL HG23 H N N 408 VAL HXT H N N 409 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 SO4 S O1 doub N N 303 SO4 S O2 doub N N 304 SO4 S O3 sing N N 305 SO4 S O4 sing N N 306 THR N CA sing N N 307 THR N H sing N N 308 THR N H2 sing N N 309 THR CA C sing N N 310 THR CA CB sing N N 311 THR CA HA sing N N 312 THR C O doub N N 313 THR C OXT sing N N 314 THR CB OG1 sing N N 315 THR CB CG2 sing N N 316 THR CB HB sing N N 317 THR OG1 HG1 sing N N 318 THR CG2 HG21 sing N N 319 THR CG2 HG22 sing N N 320 THR CG2 HG23 sing N N 321 THR OXT HXT sing N N 322 TRP N CA sing N N 323 TRP N H sing N N 324 TRP N H2 sing N N 325 TRP CA C sing N N 326 TRP CA CB sing N N 327 TRP CA HA sing N N 328 TRP C O doub N N 329 TRP C OXT sing N N 330 TRP CB CG sing N N 331 TRP CB HB2 sing N N 332 TRP CB HB3 sing N N 333 TRP CG CD1 doub Y N 334 TRP CG CD2 sing Y N 335 TRP CD1 NE1 sing Y N 336 TRP CD1 HD1 sing N N 337 TRP CD2 CE2 doub Y N 338 TRP CD2 CE3 sing Y N 339 TRP NE1 CE2 sing Y N 340 TRP NE1 HE1 sing N N 341 TRP CE2 CZ2 sing Y N 342 TRP CE3 CZ3 doub Y N 343 TRP CE3 HE3 sing N N 344 TRP CZ2 CH2 doub Y N 345 TRP CZ2 HZ2 sing N N 346 TRP CZ3 CH2 sing Y N 347 TRP CZ3 HZ3 sing N N 348 TRP CH2 HH2 sing N N 349 TRP OXT HXT sing N N 350 TYR N CA sing N N 351 TYR N H sing N N 352 TYR N H2 sing N N 353 TYR CA C sing N N 354 TYR CA CB sing N N 355 TYR CA HA sing N N 356 TYR C O doub N N 357 TYR C OXT sing N N 358 TYR CB CG sing N N 359 TYR CB HB2 sing N N 360 TYR CB HB3 sing N N 361 TYR CG CD1 doub Y N 362 TYR CG CD2 sing Y N 363 TYR CD1 CE1 sing Y N 364 TYR CD1 HD1 sing N N 365 TYR CD2 CE2 doub Y N 366 TYR CD2 HD2 sing N N 367 TYR CE1 CZ doub Y N 368 TYR CE1 HE1 sing N N 369 TYR CE2 CZ sing Y N 370 TYR CE2 HE2 sing N N 371 TYR CZ OH sing N N 372 TYR OH HH sing N N 373 TYR OXT HXT sing N N 374 VAL N CA sing N N 375 VAL N H sing N N 376 VAL N H2 sing N N 377 VAL CA C sing N N 378 VAL CA CB sing N N 379 VAL CA HA sing N N 380 VAL C O doub N N 381 VAL C OXT sing N N 382 VAL CB CG1 sing N N 383 VAL CB CG2 sing N N 384 VAL CB HB sing N N 385 VAL CG1 HG11 sing N N 386 VAL CG1 HG12 sing N N 387 VAL CG1 HG13 sing N N 388 VAL CG2 HG21 sing N N 389 VAL CG2 HG22 sing N N 390 VAL CG2 HG23 sing N N 391 VAL OXT HXT sing N N 392 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 GLYCEROL GOL 4 water HOH # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 1TIP 'PDB ENTRIES 1TIP, 5PGM +HOMOLOGY MODEL' 2 ? 'experimental model' PDB 5PGM 'PDB ENTRIES 1TIP, 5PGM +HOMOLOGY MODEL' #