data_1EBT # _entry.id 1EBT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1EBT pdb_00001ebt 10.2210/pdb1ebt/pdb WWPDB D_1000172999 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EBT _pdbx_database_status.recvd_initial_deposition_date 1998-11-04 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rosano, C.' 1 'Bolognesi, M.' 2 'Ascenzi, P.' 3 # _citation.id primary _citation.title 'Cyanide binding to Lucina pectinata hemoglobin I and to sperm whale myoglobin: an x-ray crystallographic study.' _citation.journal_abbrev Biophys.J. _citation.journal_volume 77 _citation.page_first 1093 _citation.page_last 1099 _citation.year 1999 _citation.journal_id_ASTM BIOJAU _citation.country US _citation.journal_id_ISSN 0006-3495 _citation.journal_id_CSD 0030 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10423453 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bolognesi, M.' 1 ? primary 'Rosano, C.' 2 ? primary 'Losso, R.' 3 ? primary 'Borassi, A.' 4 ? primary 'Rizzi, M.' 5 ? primary 'Wittenberg, J.B.' 6 ? primary 'Boffi, A.' 7 ? primary 'Ascenzi, P.' 8 ? # _cell.entry_id 1EBT _cell.length_a 50.670 _cell.length_b 38.760 _cell.length_c 42.530 _cell.angle_alpha 90.00 _cell.angle_beta 106.93 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EBT _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat HEMOGLOBIN 14744.429 1 ? ? ? ? 2 non-polymer syn 'CYANIDE ION' 26.017 1 ? ? ? ? 3 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 1 ? ? ? ? 4 water nat water 18.015 79 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SLSAAQKDNVTSSWAKASAAWGTAGPEFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLD NAGALEGQCKTFAANHKARGISAGQLEAAFKVLSGFMKSYGGDEGAWTAVAGALMGEIEPNM ; _entity_poly.pdbx_seq_one_letter_code_can ;SLSAAQKDNVTSSWAKASAAWGTAGPEFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLD NAGALEGQCKTFAANHKARGISAGQLEAAFKVLSGFMKSYGGDEGAWTAVAGALMGEIEPNM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LEU n 1 3 SER n 1 4 ALA n 1 5 ALA n 1 6 GLN n 1 7 LYS n 1 8 ASP n 1 9 ASN n 1 10 VAL n 1 11 THR n 1 12 SER n 1 13 SER n 1 14 TRP n 1 15 ALA n 1 16 LYS n 1 17 ALA n 1 18 SER n 1 19 ALA n 1 20 ALA n 1 21 TRP n 1 22 GLY n 1 23 THR n 1 24 ALA n 1 25 GLY n 1 26 PRO n 1 27 GLU n 1 28 PHE n 1 29 PHE n 1 30 MET n 1 31 ALA n 1 32 LEU n 1 33 PHE n 1 34 ASP n 1 35 ALA n 1 36 HIS n 1 37 ASP n 1 38 ASP n 1 39 VAL n 1 40 PHE n 1 41 ALA n 1 42 LYS n 1 43 PHE n 1 44 SER n 1 45 GLY n 1 46 LEU n 1 47 PHE n 1 48 SER n 1 49 GLY n 1 50 ALA n 1 51 ALA n 1 52 LYS n 1 53 GLY n 1 54 THR n 1 55 VAL n 1 56 LYS n 1 57 ASN n 1 58 THR n 1 59 PRO n 1 60 GLU n 1 61 MET n 1 62 ALA n 1 63 ALA n 1 64 GLN n 1 65 ALA n 1 66 GLN n 1 67 SER n 1 68 PHE n 1 69 LYS n 1 70 GLY n 1 71 LEU n 1 72 VAL n 1 73 SER n 1 74 ASN n 1 75 TRP n 1 76 VAL n 1 77 ASP n 1 78 ASN n 1 79 LEU n 1 80 ASP n 1 81 ASN n 1 82 ALA n 1 83 GLY n 1 84 ALA n 1 85 LEU n 1 86 GLU n 1 87 GLY n 1 88 GLN n 1 89 CYS n 1 90 LYS n 1 91 THR n 1 92 PHE n 1 93 ALA n 1 94 ALA n 1 95 ASN n 1 96 HIS n 1 97 LYS n 1 98 ALA n 1 99 ARG n 1 100 GLY n 1 101 ILE n 1 102 SER n 1 103 ALA n 1 104 GLY n 1 105 GLN n 1 106 LEU n 1 107 GLU n 1 108 ALA n 1 109 ALA n 1 110 PHE n 1 111 LYS n 1 112 VAL n 1 113 LEU n 1 114 SER n 1 115 GLY n 1 116 PHE n 1 117 MET n 1 118 LYS n 1 119 SER n 1 120 TYR n 1 121 GLY n 1 122 GLY n 1 123 ASP n 1 124 GLU n 1 125 GLY n 1 126 ALA n 1 127 TRP n 1 128 THR n 1 129 ALA n 1 130 VAL n 1 131 ALA n 1 132 GLY n 1 133 ALA n 1 134 LEU n 1 135 MET n 1 136 GLY n 1 137 GLU n 1 138 ILE n 1 139 GLU n 1 140 PRO n 1 141 ASN n 1 142 MET n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Lucina pectinata' _entity_src_nat.pdbx_ncbi_taxonomy_id 29163 _entity_src_nat.genus Lucina _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GLB1_LUCPE _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P41260 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;SLEAAQKSNVTSSWAKASAAWGTAGPEFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLD NAGALEGQCKTFAANHKARGISAGQLEAAFKVLSGFMKSYGGDEGAWTAVAGALMGEIEPDM ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1EBT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 142 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P41260 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 142 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 142 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1EBT SER A 3 ? UNP P41260 GLU 3 'SEE REMARK 999' 3 1 1 1EBT ASP A 8 ? UNP P41260 SER 8 'SEE REMARK 999' 8 2 1 1EBT ASN A 141 ? UNP P41260 ASP 141 'SEE REMARK 999' 141 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYN non-polymer . 'CYANIDE ION' ? 'C N -1' 26.017 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1EBT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.50 _exptl_crystal.density_percent_sol 50.8 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 7.00' # _diffrn.id 1 _diffrn.ambient_temp 300.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS' _diffrn_detector.pdbx_collection_date 1995-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1EBT _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 24.000 _reflns.d_resolution_high 1.900 _reflns.number_obs 12085 _reflns.number_all ? _reflns.percent_possible_obs 93.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.200 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1EBT _refine.ls_number_reflns_obs 12085 _refine.ls_number_reflns_all 12085 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.0 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 93.0 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol 0.84 _refine.solvent_model_param_bsol 57.80 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 1FLP _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model 'TNT BCORREL' _refine.pdbx_stereochemistry_target_values 'TNT PROTGEO' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1036 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 45 _refine_hist.number_atoms_solvent 79 _refine_hist.number_atoms_total 1160 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 24.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.015 ? 1.500 1106 'X-RAY DIFFRACTION' ? t_angle_deg 2.397 ? 2.000 1486 'X-RAY DIFFRACTION' ? t_dihedral_angle_d 14.176 ? 0.000 637 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct 0.000 ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes 0.016 ? 2.500 28 'X-RAY DIFFRACTION' ? t_gen_planes 0.011 ? 9.000 163 'X-RAY DIFFRACTION' ? t_it 2.321 ? 10.000 1059 'X-RAY DIFFRACTION' ? t_nbd 0.062 ? 15.000 11 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1EBT _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.184 _pdbx_refine.free_R_factor_no_cutoff 0.212 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 10.000 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 1208 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 1EBT _struct.title 'HEMOGLOBIN I FROM THE CLAM LUCINA PECTINATA BOUND WITH CYANIDE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EBT _struct_keywords.pdbx_keywords 'OXYGEN TRANSPORT' _struct_keywords.text 'OXYGEN TRANSPORT, HEMOGLOBIN, OXYGEN CARRIER, GLOBIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 4 ? ALA A 19 ? ALA A 4 ALA A 19 1 ? 16 HELX_P HELX_P2 2 TRP A 21 ? ALA A 35 ? TRP A 21 ALA A 35 1 ? 15 HELX_P HELX_P3 3 ASP A 37 ? PHE A 43 ? ASP A 37 PHE A 43 1 ? 7 HELX_P HELX_P4 4 LYS A 52 ? THR A 54 ? LYS A 52 THR A 54 5 ? 3 HELX_P HELX_P5 5 PRO A 59 ? ASN A 78 ? PRO A 59 ASN A 78 1 ? 20 HELX_P HELX_P6 6 ALA A 82 ? ARG A 99 ? ALA A 82 ARG A 99 1 ? 18 HELX_P HELX_P7 7 ALA A 103 ? TYR A 120 ? ALA A 103 TYR A 120 1 ? 18 HELX_P HELX_P8 8 GLU A 124 ? ILE A 138 ? GLU A 124 ILE A 138 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A HIS 96 NE2 ? ? ? 1_555 C HEM . FE ? ? A HIS 96 A HEM 144 1_555 ? ? ? ? ? ? ? 2.150 ? ? metalc2 metalc ? ? C HEM . FE ? ? ? 1_555 B CYN . C ? ? A HEM 144 A CYN 145 1_555 ? ? ? ? ? ? ? 2.541 ? ? metalc3 metalc ? ? C HEM . FE ? ? ? 1_555 B CYN . N ? ? A HEM 144 A CYN 145 1_555 ? ? ? ? ? ? ? 2.662 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CYN 145 ? 3 'BINDING SITE FOR RESIDUE CYN A 145' AC2 Software A HEM 144 ? 12 'BINDING SITE FOR RESIDUE HEM A 144' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 PHE A 43 ? PHE A 43 . ? 1_555 ? 2 AC1 3 GLN A 64 ? GLN A 64 . ? 1_555 ? 3 AC1 3 HEM C . ? HEM A 144 . ? 1_555 ? 4 AC2 12 LYS A 42 ? LYS A 42 . ? 1_555 ? 5 AC2 12 PHE A 43 ? PHE A 43 . ? 1_555 ? 6 AC2 12 GLN A 64 ? GLN A 64 . ? 1_555 ? 7 AC2 12 SER A 67 ? SER A 67 . ? 1_555 ? 8 AC2 12 PHE A 68 ? PHE A 68 . ? 1_555 ? 9 AC2 12 PHE A 92 ? PHE A 92 . ? 1_555 ? 10 AC2 12 ASN A 95 ? ASN A 95 . ? 1_555 ? 11 AC2 12 HIS A 96 ? HIS A 96 . ? 1_555 ? 12 AC2 12 ARG A 99 ? ARG A 99 . ? 1_555 ? 13 AC2 12 ILE A 101 ? ILE A 101 . ? 1_555 ? 14 AC2 12 CYN B . ? CYN A 145 . ? 1_555 ? 15 AC2 12 HOH D . ? HOH A 504 . ? 1_555 ? # _database_PDB_matrix.entry_id 1EBT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1EBT _atom_sites.fract_transf_matrix[1][1] 0.019736 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006007 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025800 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024578 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 TRP 14 14 14 TRP TRP A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 TRP 21 21 21 TRP TRP A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 MET 30 30 30 MET MET A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 HIS 36 36 36 HIS HIS A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 PHE 43 43 43 PHE PHE A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 MET 61 61 61 MET MET A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 GLN 64 64 64 GLN GLN A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 GLN 66 66 66 GLN GLN A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 PHE 68 68 68 PHE PHE A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 TRP 75 75 75 TRP TRP A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 CYS 89 89 89 CYS CYS A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 PHE 92 92 92 PHE PHE A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 HIS 96 96 96 HIS HIS A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 GLN 105 105 105 GLN GLN A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 PHE 110 110 110 PHE PHE A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 PHE 116 116 116 PHE PHE A . n A 1 117 MET 117 117 117 MET MET A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 TYR 120 120 120 TYR TYR A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 GLY 125 125 125 GLY GLY A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 TRP 127 127 127 TRP TRP A . n A 1 128 THR 128 128 128 THR THR A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 ALA 133 133 133 ALA ALA A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 MET 135 135 135 MET MET A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 GLU 139 139 139 GLU GLU A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 ASN 141 141 141 ASN ASN A . n A 1 142 MET 142 142 142 MET MET A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CYN 1 145 145 CYN CYN A . C 3 HEM 1 144 144 HEM HEM A . D 4 HOH 1 502 502 HOH HOH A . D 4 HOH 2 503 503 HOH HOH A . D 4 HOH 3 504 504 HOH HOH A . D 4 HOH 4 505 505 HOH HOH A . D 4 HOH 5 506 506 HOH HOH A . D 4 HOH 6 507 507 HOH HOH A . D 4 HOH 7 508 508 HOH HOH A . D 4 HOH 8 510 510 HOH HOH A . D 4 HOH 9 511 511 HOH HOH A . D 4 HOH 10 512 512 HOH HOH A . D 4 HOH 11 514 514 HOH HOH A . D 4 HOH 12 515 515 HOH HOH A . D 4 HOH 13 516 516 HOH HOH A . D 4 HOH 14 517 517 HOH HOH A . D 4 HOH 15 518 518 HOH HOH A . D 4 HOH 16 519 519 HOH HOH A . D 4 HOH 17 520 520 HOH HOH A . D 4 HOH 18 521 521 HOH HOH A . D 4 HOH 19 522 522 HOH HOH A . D 4 HOH 20 523 523 HOH HOH A . D 4 HOH 21 524 524 HOH HOH A . D 4 HOH 22 525 525 HOH HOH A . D 4 HOH 23 526 526 HOH HOH A . D 4 HOH 24 529 529 HOH HOH A . D 4 HOH 25 530 530 HOH HOH A . D 4 HOH 26 533 533 HOH HOH A . D 4 HOH 27 534 534 HOH HOH A . D 4 HOH 28 535 535 HOH HOH A . D 4 HOH 29 537 537 HOH HOH A . D 4 HOH 30 538 538 HOH HOH A . D 4 HOH 31 540 540 HOH HOH A . D 4 HOH 32 544 544 HOH HOH A . D 4 HOH 33 545 545 HOH HOH A . D 4 HOH 34 547 547 HOH HOH A . D 4 HOH 35 548 548 HOH HOH A . D 4 HOH 36 549 549 HOH HOH A . D 4 HOH 37 550 550 HOH HOH A . D 4 HOH 38 553 553 HOH HOH A . D 4 HOH 39 554 554 HOH HOH A . D 4 HOH 40 556 556 HOH HOH A . D 4 HOH 41 563 563 HOH HOH A . D 4 HOH 42 564 564 HOH HOH A . D 4 HOH 43 565 565 HOH HOH A . D 4 HOH 44 566 566 HOH HOH A . D 4 HOH 45 567 567 HOH HOH A . D 4 HOH 46 568 568 HOH HOH A . D 4 HOH 47 569 569 HOH HOH A . D 4 HOH 48 570 570 HOH HOH A . D 4 HOH 49 572 572 HOH HOH A . D 4 HOH 50 573 573 HOH HOH A . D 4 HOH 51 575 575 HOH HOH A . D 4 HOH 52 579 579 HOH HOH A . D 4 HOH 53 586 586 HOH HOH A . D 4 HOH 54 588 588 HOH HOH A . D 4 HOH 55 589 589 HOH HOH A . D 4 HOH 56 594 594 HOH HOH A . D 4 HOH 57 595 595 HOH HOH A . D 4 HOH 58 597 597 HOH HOH A . D 4 HOH 59 598 598 HOH HOH A . D 4 HOH 60 600 600 HOH HOH A . D 4 HOH 61 605 605 HOH HOH A . D 4 HOH 62 606 606 HOH HOH A . D 4 HOH 63 607 607 HOH HOH A . D 4 HOH 64 609 609 HOH HOH A . D 4 HOH 65 616 616 HOH HOH A . D 4 HOH 66 617 617 HOH HOH A . D 4 HOH 67 618 618 HOH HOH A . D 4 HOH 68 619 619 HOH HOH A . D 4 HOH 69 623 623 HOH HOH A . D 4 HOH 70 633 633 HOH HOH A . D 4 HOH 71 639 639 HOH HOH A . D 4 HOH 72 640 640 HOH HOH A . D 4 HOH 73 644 644 HOH HOH A . D 4 HOH 74 646 646 HOH HOH A . D 4 HOH 75 647 647 HOH HOH A . D 4 HOH 76 648 648 HOH HOH A . D 4 HOH 77 649 649 HOH HOH A . D 4 HOH 78 652 652 HOH HOH A . D 4 HOH 79 653 653 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 96 ? A HIS 96 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 NA ? C HEM . ? A HEM 144 ? 1_555 94.0 ? 2 NE2 ? A HIS 96 ? A HIS 96 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 NB ? C HEM . ? A HEM 144 ? 1_555 90.7 ? 3 NA ? C HEM . ? A HEM 144 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 NB ? C HEM . ? A HEM 144 ? 1_555 86.8 ? 4 NE2 ? A HIS 96 ? A HIS 96 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 NC ? C HEM . ? A HEM 144 ? 1_555 85.5 ? 5 NA ? C HEM . ? A HEM 144 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 NC ? C HEM . ? A HEM 144 ? 1_555 177.3 ? 6 NB ? C HEM . ? A HEM 144 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 NC ? C HEM . ? A HEM 144 ? 1_555 90.5 ? 7 NE2 ? A HIS 96 ? A HIS 96 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 ND ? C HEM . ? A HEM 144 ? 1_555 89.4 ? 8 NA ? C HEM . ? A HEM 144 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 ND ? C HEM . ? A HEM 144 ? 1_555 95.5 ? 9 NB ? C HEM . ? A HEM 144 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 ND ? C HEM . ? A HEM 144 ? 1_555 177.7 ? 10 NC ? C HEM . ? A HEM 144 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 ND ? C HEM . ? A HEM 144 ? 1_555 87.2 ? 11 NE2 ? A HIS 96 ? A HIS 96 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 C ? B CYN . ? A CYN 145 ? 1_555 170.6 ? 12 NA ? C HEM . ? A HEM 144 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 C ? B CYN . ? A CYN 145 ? 1_555 95.2 ? 13 NB ? C HEM . ? A HEM 144 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 C ? B CYN . ? A CYN 145 ? 1_555 91.6 ? 14 NC ? C HEM . ? A HEM 144 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 C ? B CYN . ? A CYN 145 ? 1_555 85.3 ? 15 ND ? C HEM . ? A HEM 144 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 C ? B CYN . ? A CYN 145 ? 1_555 88.0 ? 16 NE2 ? A HIS 96 ? A HIS 96 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 N ? B CYN . ? A CYN 145 ? 1_555 162.0 ? 17 NA ? C HEM . ? A HEM 144 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 N ? B CYN . ? A CYN 145 ? 1_555 70.5 ? 18 NB ? C HEM . ? A HEM 144 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 N ? B CYN . ? A CYN 145 ? 1_555 79.7 ? 19 NC ? C HEM . ? A HEM 144 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 N ? B CYN . ? A CYN 145 ? 1_555 109.5 ? 20 ND ? C HEM . ? A HEM 144 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 N ? B CYN . ? A CYN 145 ? 1_555 100.9 ? 21 C ? B CYN . ? A CYN 145 ? 1_555 FE ? C HEM . ? A HEM 144 ? 1_555 N ? B CYN . ? A CYN 145 ? 1_555 27.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-01-13 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_initial_refinement_model 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 4 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 5 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 9 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 15 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 TNT refinement 5E ? 2 MOSFLM 'data reduction' . ? 3 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 27 ? ? OE2 A GLU 27 ? ? 1.329 1.252 0.077 0.011 N 2 1 CD A GLU 86 ? ? OE2 A GLU 86 ? ? 1.320 1.252 0.068 0.011 N 3 1 CD A GLU 137 ? ? OE1 A GLU 137 ? ? 1.183 1.252 -0.069 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 38 ? ? CG A ASP 38 ? ? OD2 A ASP 38 ? ? 111.94 118.30 -6.36 0.90 N 2 1 CB A ASP 77 ? ? CG A ASP 77 ? ? OD1 A ASP 77 ? ? 111.35 118.30 -6.95 0.90 N 3 1 CB A ASP 77 ? ? CG A ASP 77 ? ? OD2 A ASP 77 ? ? 124.66 118.30 6.36 0.90 N 4 1 CB A ASP 80 ? ? CG A ASP 80 ? ? OD1 A ASP 80 ? ? 111.83 118.30 -6.47 0.90 N 5 1 CB A ASP 80 ? ? CG A ASP 80 ? ? OD2 A ASP 80 ? ? 124.96 118.30 6.66 0.90 N 6 1 NE A ARG 99 ? ? CZ A ARG 99 ? ? NH2 A ARG 99 ? ? 115.35 120.30 -4.95 0.50 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 16 ? CE ? A LYS 16 CE 2 1 Y 0 A LYS 16 ? NZ ? A LYS 16 NZ 3 1 Y 0 A ASP 37 ? OD1 ? A ASP 37 OD1 4 1 Y 0 A ASP 37 ? OD2 ? A ASP 37 OD2 5 1 Y 0 A GLN 66 ? CD ? A GLN 66 CD 6 1 Y 0 A GLN 66 ? NE2 ? A GLN 66 NE2 7 1 Y 0 A ASN 74 ? CG ? A ASN 74 CG 8 1 Y 0 A LYS 90 ? CD ? A LYS 90 CD 9 1 Y 0 A LYS 90 ? CE ? A LYS 90 CE 10 1 Y 0 A LYS 90 ? NZ ? A LYS 90 NZ 11 1 Y 0 A LYS 97 ? CE ? A LYS 97 CE 12 1 Y 0 A LYS 97 ? NZ ? A LYS 97 NZ 13 1 Y 0 A LYS 111 ? CD ? A LYS 111 CD 14 1 Y 0 A LYS 111 ? CE ? A LYS 111 CE 15 1 Y 0 A LYS 111 ? NZ ? A LYS 111 NZ 16 1 Y 0 A LYS 118 ? NZ ? A LYS 118 NZ 17 1 Y 0 A GLU 139 ? CD ? A GLU 139 CD 18 1 Y 0 A GLU 139 ? OE1 ? A GLU 139 OE1 19 1 Y 0 A GLU 139 ? OE2 ? A GLU 139 OE2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CYANIDE ION' CYN 3 'PROTOPORPHYRIN IX CONTAINING FE' HEM 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1FLP _pdbx_initial_refinement_model.details ? #