HEADER CELL ADHESION PROTEIN 15-MAY-96 1EDH TITLE E-CADHERIN DOMAINS 1 AND 2 IN COMPLEX WITH CALCIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: E-CADHERIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EPITHELIAL CADHERIN DOMAINS 1 AND 2, ECAD12; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 TISSUE: EPITHELIAL; SOURCE 6 CELLULAR_LOCATION: CELL SURFACE; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: AR58; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PAS KEYWDS CADHERIN, CELL ADHESION PROTEIN, CALCIUM BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.NAGAR,M.OVERDUIN,M.IKURA,J.M.RINI REVDAT 3 07-FEB-24 1EDH 1 REMARK LINK REVDAT 2 24-FEB-09 1EDH 1 VERSN REVDAT 1 11-JAN-97 1EDH 0 JRNL AUTH B.NAGAR,M.OVERDUIN,M.IKURA,J.M.RINI JRNL TITL STRUCTURAL BASIS OF CALCIUM-INDUCED E-CADHERIN JRNL TITL 2 RIGIDIFICATION AND DIMERIZATION. JRNL REF NATURE V. 380 360 1996 JRNL REFN ISSN 0028-0836 JRNL PMID 8598933 JRNL DOI 10.1038/380360A0 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 5.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 83.400 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 33174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3333 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 54.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1961 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 209 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3226 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.375 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.96 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.198 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX_3.1.PRO REMARK 3 PARAMETER FILE 2 : CAD.PAR REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX_3.1.PRO REMARK 3 TOPOLOGY FILE 2 : NCAD.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE ELECTRON DENSITY FOR THE LOOP BETWEEN STRANDS REMARK 3 B AND C (RESIDUES 27 - 32) IS WEAK. REMARK 4 REMARK 4 1EDH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173022. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-95 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.908 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : PRINCETON 2K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37605 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 22.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.59 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.14600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: THE INITIAL MODEL WAS REMARK 200 OBTAINED FROM A COMBINATION OF MULTI-WAVELENGTH ANOMALOUS REMARK 200 DIFFRACTION (MAD) AND REAL SPACE AVERAGING TECHNIQUES. THE MAD REMARK 200 DATA WAS TAKEN AT THE MERCURY L(III) EDGE AT 3 DIFFERENT REMARK 200 WAVELENGTHS (CHESS BEAMLINE F2). REAL SPACE AVERAGING WAS USED REMARK 200 TO IMPROVE THE MAPS. REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M AMMONIUM SULFATE 0.01 M CALCIUM REMARK 280 CHLORIDE 0.1 M TRIS-HCL BUFFER, PH 9.0 0.003 M SODIUM AZIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.82850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.40100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.82850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.40100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT (MOLECULES A AND B) CONTAINS A REMARK 300 CALCIUM MEDIATED DIMER. REMARK 300 REMARK 300 BOTH MOLECULES IN THE ASYMMETRIC UNIT CONTAIN THREE REMARK 300 CALCIUM IONS (CA 2+) AND ONE MERCURY ATOM (HG). REMARK 300 THE MERCURY ATOMS ARE BOUND TO AN EXPOSED CYSTEINE REMARK 300 RESIDUE IN THE N-TERMINAL DOMAIN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 ARG A 0 REMARK 465 ASP A 1 REMARK 465 TRP A 2 REMARK 465 ILE A 214 REMARK 465 ASN A 215 REMARK 465 ASP A 216 REMARK 465 ASN A 217 REMARK 465 ALA A 218 REMARK 465 PRO A 219 REMARK 465 VAL A 220 REMARK 465 PHE A 221 REMARK 465 ASN A 222 REMARK 465 PRO A 223 REMARK 465 SER A 224 REMARK 465 MET B -1 REMARK 465 ARG B 0 REMARK 465 ASP B 1 REMARK 465 TRP B 2 REMARK 465 ILE B 214 REMARK 465 ASN B 215 REMARK 465 ASP B 216 REMARK 465 ASN B 217 REMARK 465 ALA B 218 REMARK 465 PRO B 219 REMARK 465 VAL B 220 REMARK 465 PHE B 221 REMARK 465 ASN B 222 REMARK 465 PRO B 223 REMARK 465 SER B 224 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 21 -64.03 -108.80 REMARK 500 ALA A 43 -91.52 -117.07 REMARK 500 GLU A 156 42.00 -92.25 REMARK 500 ASP A 195 -167.31 -78.93 REMARK 500 LEU B 21 -58.10 -120.24 REMARK 500 ALA B 43 -97.86 -110.49 REMARK 500 ASP B 137 98.63 -69.34 REMARK 500 GLU B 156 43.67 -91.62 REMARK 500 ASN B 161 40.85 75.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE2 REMARK 620 2 GLU A 69 OE1 85.9 REMARK 620 3 GLU A 69 OE2 103.8 49.7 REMARK 620 4 ASP A 100 OD1 81.2 119.3 76.6 REMARK 620 5 GLN A 101 O 85.7 154.7 155.5 82.8 REMARK 620 6 ASP A 103 OD1 90.4 78.4 123.8 159.4 77.9 REMARK 620 7 ASP A 136 OD1 169.1 104.6 85.5 95.5 83.6 89.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE1 REMARK 620 2 ASP A 67 OD1 90.7 REMARK 620 3 GLU A 69 OE1 90.5 93.1 REMARK 620 4 ASP A 103 OD2 99.7 156.8 107.4 REMARK 620 5 ASP A 103 OD1 90.3 159.3 66.2 42.4 REMARK 620 6 HOH A 313 O 170.4 90.4 79.9 82.8 85.4 REMARK 620 7 HOH A 407 O 90.8 77.4 170.5 81.7 123.2 98.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 102 OD1 REMARK 620 2 ASN A 104 O 98.6 REMARK 620 3 ASP A 134 OD1 148.9 91.4 REMARK 620 4 ASP A 134 OD2 155.5 93.0 51.3 REMARK 620 5 ASP A 136 OD2 74.6 80.1 78.2 129.0 REMARK 620 6 ASN A 143 O 81.1 176.7 90.6 86.1 102.9 REMARK 620 7 ASP A 195 OD2 79.1 91.5 130.4 79.1 150.7 85.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG B 400 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 9 SG REMARK 620 2 GLU B 13 OE1 97.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 11 OE2 REMARK 620 2 GLU B 69 OE1 83.6 REMARK 620 3 GLU B 69 OE2 104.8 48.6 REMARK 620 4 ASP B 100 OD1 86.3 121.2 79.3 REMARK 620 5 GLN B 101 O 86.9 155.2 156.2 80.9 REMARK 620 6 ASP B 103 OD1 88.6 78.7 122.1 158.6 78.1 REMARK 620 7 ASP B 136 OD1 166.3 101.5 87.9 101.4 83.3 80.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 11 OE1 REMARK 620 2 ASP B 67 OD1 89.9 REMARK 620 3 GLU B 69 OE1 91.3 95.9 REMARK 620 4 ASP B 103 OD2 93.1 157.5 106.3 REMARK 620 5 HOH B 457 O 88.7 82.8 178.6 75.0 REMARK 620 6 HOH B 458 O 170.5 99.0 84.5 80.0 95.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 102 OD1 REMARK 620 2 ASN B 104 O 98.7 REMARK 620 3 ASP B 134 OD2 156.7 94.3 REMARK 620 4 ASP B 134 OD1 145.8 91.7 52.0 REMARK 620 5 ASP B 136 OD2 71.9 76.5 130.3 79.1 REMARK 620 6 ASN B 143 O 82.8 172.2 86.9 83.0 96.8 REMARK 620 7 ASP B 195 OD2 79.5 96.0 80.0 131.9 148.7 91.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 403 DBREF 1EDH A 0 224 UNP P09803 CADH1_MOUSE 156 380 DBREF 1EDH B 0 224 UNP P09803 CADH1_MOUSE 156 380 SEQRES 1 A 226 MET ARG ASP TRP VAL ILE PRO PRO ILE SER CYS PRO GLU SEQRES 2 A 226 ASN GLU LYS GLY GLU PHE PRO LYS ASN LEU VAL GLN ILE SEQRES 3 A 226 LYS SER ASN ARG ASP LYS GLU THR LYS VAL PHE TYR SER SEQRES 4 A 226 ILE THR GLY GLN GLY ALA ASP LYS PRO PRO VAL GLY VAL SEQRES 5 A 226 PHE ILE ILE GLU ARG GLU THR GLY TRP LEU LYS VAL THR SEQRES 6 A 226 GLN PRO LEU ASP ARG GLU ALA ILE ALA LYS TYR ILE LEU SEQRES 7 A 226 TYR SER HIS ALA VAL SER SER ASN GLY GLU ALA VAL GLU SEQRES 8 A 226 ASP PRO MET GLU ILE VAL ILE THR VAL THR ASP GLN ASN SEQRES 9 A 226 ASP ASN ARG PRO GLU PHE THR GLN GLU VAL PHE GLU GLY SEQRES 10 A 226 SER VAL ALA GLU GLY ALA VAL PRO GLY THR SER VAL MET SEQRES 11 A 226 LYS VAL SER ALA THR ASP ALA ASP ASP ASP VAL ASN THR SEQRES 12 A 226 TYR ASN ALA ALA ILE ALA TYR THR ILE VAL SER GLN ASP SEQRES 13 A 226 PRO GLU LEU PRO HIS LYS ASN MET PHE THR VAL ASN ARG SEQRES 14 A 226 ASP THR GLY VAL ILE SER VAL LEU THR SER GLY LEU ASP SEQRES 15 A 226 ARG GLU SER TYR PRO THR TYR THR LEU VAL VAL GLN ALA SEQRES 16 A 226 ALA ASP LEU GLN GLY GLU GLY LEU SER THR THR ALA LYS SEQRES 17 A 226 ALA VAL ILE THR VAL LYS ASP ILE ASN ASP ASN ALA PRO SEQRES 18 A 226 VAL PHE ASN PRO SER SEQRES 1 B 226 MET ARG ASP TRP VAL ILE PRO PRO ILE SER CYS PRO GLU SEQRES 2 B 226 ASN GLU LYS GLY GLU PHE PRO LYS ASN LEU VAL GLN ILE SEQRES 3 B 226 LYS SER ASN ARG ASP LYS GLU THR LYS VAL PHE TYR SER SEQRES 4 B 226 ILE THR GLY GLN GLY ALA ASP LYS PRO PRO VAL GLY VAL SEQRES 5 B 226 PHE ILE ILE GLU ARG GLU THR GLY TRP LEU LYS VAL THR SEQRES 6 B 226 GLN PRO LEU ASP ARG GLU ALA ILE ALA LYS TYR ILE LEU SEQRES 7 B 226 TYR SER HIS ALA VAL SER SER ASN GLY GLU ALA VAL GLU SEQRES 8 B 226 ASP PRO MET GLU ILE VAL ILE THR VAL THR ASP GLN ASN SEQRES 9 B 226 ASP ASN ARG PRO GLU PHE THR GLN GLU VAL PHE GLU GLY SEQRES 10 B 226 SER VAL ALA GLU GLY ALA VAL PRO GLY THR SER VAL MET SEQRES 11 B 226 LYS VAL SER ALA THR ASP ALA ASP ASP ASP VAL ASN THR SEQRES 12 B 226 TYR ASN ALA ALA ILE ALA TYR THR ILE VAL SER GLN ASP SEQRES 13 B 226 PRO GLU LEU PRO HIS LYS ASN MET PHE THR VAL ASN ARG SEQRES 14 B 226 ASP THR GLY VAL ILE SER VAL LEU THR SER GLY LEU ASP SEQRES 15 B 226 ARG GLU SER TYR PRO THR TYR THR LEU VAL VAL GLN ALA SEQRES 16 B 226 ALA ASP LEU GLN GLY GLU GLY LEU SER THR THR ALA LYS SEQRES 17 B 226 ALA VAL ILE THR VAL LYS ASP ILE ASN ASP ASN ALA PRO SEQRES 18 B 226 VAL PHE ASN PRO SER HET HG A 300 1 HET CA A 301 1 HET CA A 302 1 HET CA A 303 1 HET HG B 400 1 HET CA B 401 1 HET CA B 402 1 HET CA B 403 1 HETNAM HG MERCURY (II) ION HETNAM CA CALCIUM ION FORMUL 3 HG 2(HG 2+) FORMUL 4 CA 6(CA 2+) FORMUL 11 HOH *249(H2 O) HELIX 1 1 ASN A 27 LYS A 30 5 4 HELIX 2 2 LEU A 196 GLY A 198 5 3 HELIX 3 3 ASN B 27 LYS B 30 5 4 HELIX 4 4 ASP B 195 GLY B 198 1 4 SHEET 1 A 4 ILE A 7 PRO A 10 0 SHEET 2 A 4 MET A 92 THR A 99 1 N THR A 97 O ILE A 7 SHEET 3 A 4 LYS A 73 SER A 82 -1 N SER A 78 O MET A 92 SHEET 4 A 4 VAL A 34 THR A 39 -1 N THR A 39 O TYR A 77 SHEET 1 B 3 PHE A 51 ILE A 53 0 SHEET 2 B 3 TRP A 59 VAL A 62 -1 N LYS A 61 O ILE A 52 SHEET 3 B 3 LYS A 19 GLN A 23 -1 N VAL A 22 O LEU A 60 SHEET 1 C 4 VAL A 112 ALA A 118 0 SHEET 2 C 4 SER A 202 LYS A 212 1 N LYS A 206 O PHE A 113 SHEET 3 C 4 THR A 186 ALA A 194 -1 N ALA A 193 O THR A 203 SHEET 4 C 4 ALA A 147 ASP A 154 -1 N ASP A 154 O THR A 188 SHEET 1 D 3 PHE A 163 VAL A 165 0 SHEET 2 D 3 VAL A 171 VAL A 174 -1 N SER A 173 O THR A 164 SHEET 3 D 3 SER A 126 LYS A 129 -1 N MET A 128 O ILE A 172 SHEET 1 E 4 ILE B 7 PRO B 10 0 SHEET 2 E 4 MET B 92 THR B 99 1 N THR B 97 O ILE B 7 SHEET 3 E 4 LYS B 73 SER B 82 -1 N SER B 78 O MET B 92 SHEET 4 E 4 VAL B 34 THR B 39 -1 N THR B 39 O TYR B 77 SHEET 1 F 3 PHE B 51 ILE B 53 0 SHEET 2 F 3 TRP B 59 VAL B 62 -1 N LYS B 61 O ILE B 52 SHEET 3 F 3 LYS B 19 GLN B 23 -1 N VAL B 22 O LEU B 60 SHEET 1 G 4 VAL B 112 ALA B 118 0 SHEET 2 G 4 SER B 202 LYS B 212 1 N LYS B 206 O PHE B 113 SHEET 3 G 4 THR B 186 ALA B 194 -1 N ALA B 193 O THR B 203 SHEET 4 G 4 ALA B 147 ASP B 154 -1 N ASP B 154 O THR B 188 SHEET 1 H 3 PHE B 163 VAL B 165 0 SHEET 2 H 3 VAL B 171 VAL B 174 -1 N SER B 173 O THR B 164 SHEET 3 H 3 SER B 126 LYS B 129 -1 N MET B 128 O ILE B 172 LINK SG CYS A 9 HG HG A 300 1555 1555 2.59 LINK OE2 GLU A 11 CA CA A 302 1555 1555 2.41 LINK OE1 GLU A 11 CA CA A 303 1555 1555 2.32 LINK OD1 ASP A 67 CA CA A 303 1555 1555 2.35 LINK OE1 GLU A 69 CA CA A 302 1555 1555 2.72 LINK OE2 GLU A 69 CA CA A 302 1555 1555 2.48 LINK OE1 GLU A 69 CA CA A 303 1555 1555 2.28 LINK OD1 ASP A 100 CA CA A 302 1555 1555 2.32 LINK O GLN A 101 CA CA A 302 1555 1555 2.43 LINK OD1 ASN A 102 CA CA A 301 1555 1555 2.44 LINK OD1 ASP A 103 CA CA A 302 1555 1555 2.16 LINK OD2 ASP A 103 CA CA A 303 1555 1555 2.23 LINK OD1 ASP A 103 CA CA A 303 1555 1555 3.23 LINK O ASN A 104 CA CA A 301 1555 1555 2.35 LINK OD1 ASP A 134 CA CA A 301 1555 1555 2.56 LINK OD2 ASP A 134 CA CA A 301 1555 1555 2.49 LINK OD2 ASP A 136 CA CA A 301 1555 1555 2.42 LINK OD1 ASP A 136 CA CA A 302 1555 1555 2.25 LINK O ASN A 143 CA CA A 301 1555 1555 2.40 LINK OD2 ASP A 195 CA CA A 301 1555 1555 2.31 LINK CA CA A 303 O HOH A 313 1555 1555 2.46 LINK CA CA A 303 O HOH A 407 1555 1555 2.15 LINK SG CYS B 9 HG HG B 400 1555 1555 2.32 LINK OE2 GLU B 11 CA CA B 402 1555 1555 2.35 LINK OE1 GLU B 11 CA CA B 403 1555 1555 2.31 LINK OE1 GLU B 13 HG HG B 400 1555 1555 3.07 LINK OD1 ASP B 67 CA CA B 403 1555 1555 2.13 LINK OE1 GLU B 69 CA CA B 402 1555 1555 2.79 LINK OE2 GLU B 69 CA CA B 402 1555 1555 2.53 LINK OE1 GLU B 69 CA CA B 403 1555 1555 2.23 LINK OD1 ASP B 100 CA CA B 402 1555 1555 2.30 LINK O GLN B 101 CA CA B 402 1555 1555 2.47 LINK OD1 ASN B 102 CA CA B 401 1555 1555 2.44 LINK OD1 ASP B 103 CA CA B 402 1555 1555 2.41 LINK OD2 ASP B 103 CA CA B 403 1555 1555 2.45 LINK O ASN B 104 CA CA B 401 1555 1555 2.24 LINK OD2 ASP B 134 CA CA B 401 1555 1555 2.44 LINK OD1 ASP B 134 CA CA B 401 1555 1555 2.54 LINK OD2 ASP B 136 CA CA B 401 1555 1555 2.44 LINK OD1 ASP B 136 CA CA B 402 1555 1555 2.33 LINK O ASN B 143 CA CA B 401 1555 1555 2.36 LINK OD2 ASP B 195 CA CA B 401 1555 1555 2.41 LINK CA CA B 403 O HOH B 457 1555 1555 2.14 LINK CA CA B 403 O HOH B 458 1555 1555 2.23 CISPEP 1 PHE A 17 PRO A 18 0 -0.04 CISPEP 2 PRO A 46 PRO A 47 0 -0.11 CISPEP 3 ASP A 154 PRO A 155 0 0.16 CISPEP 4 LEU A 157 PRO A 158 0 -0.11 CISPEP 5 PHE B 17 PRO B 18 0 0.23 CISPEP 6 PRO B 46 PRO B 47 0 -0.10 CISPEP 7 ASP B 154 PRO B 155 0 0.01 CISPEP 8 LEU B 157 PRO B 158 0 0.06 SITE 1 AC1 1 CYS A 9 SITE 1 AC2 6 ASN A 102 ASN A 104 ASP A 134 ASP A 136 SITE 2 AC2 6 ASN A 143 ASP A 195 SITE 1 AC3 6 GLU A 11 GLU A 69 ASP A 100 GLN A 101 SITE 2 AC3 6 ASP A 103 ASP A 136 SITE 1 AC4 6 GLU A 11 ASP A 67 GLU A 69 ASP A 103 SITE 2 AC4 6 HOH A 313 HOH A 407 SITE 1 AC5 2 CYS B 9 GLU B 13 SITE 1 AC6 6 ASN B 102 ASN B 104 ASP B 134 ASP B 136 SITE 2 AC6 6 ASN B 143 ASP B 195 SITE 1 AC7 6 GLU B 11 GLU B 69 ASP B 100 GLN B 101 SITE 2 AC7 6 ASP B 103 ASP B 136 SITE 1 AC8 6 GLU B 11 ASP B 67 GLU B 69 ASP B 103 SITE 2 AC8 6 HOH B 457 HOH B 458 CRYST1 121.657 80.802 72.635 90.00 116.65 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008220 0.000000 0.004125 0.00000 SCALE2 0.000000 0.012376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015404 0.00000