data_1EDR # _entry.id 1EDR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1EDR pdb_00001edr 10.2210/pdb1edr/pdb NDB BD0031 ? ? RCSB RCSB010471 ? ? WWPDB D_1000010471 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-02-16 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_conn_type 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.value' 10 4 'Structure model' '_struct_conn.conn_type_id' 11 4 'Structure model' '_struct_conn.id' 12 4 'Structure model' '_struct_conn.pdbx_dist_value' 13 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 15 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 28 4 'Structure model' '_struct_conn_type.id' 29 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EDR _pdbx_database_status.recvd_initial_deposition_date 2000-01-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name NDB _pdbx_database_related.db_id BD0010 _pdbx_database_related.details 'BD0010 IS THE SAME DNA DODECAMER AT 2.0 ANGSTROM' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chatake, T.' 1 'Hikima, T.' 2 'Ono, A.' 3 'Ueno, Y.' 4 'Matsuda, A.' 5 'Takenaka, A.' 6 # _citation.id primary _citation.title ;Crystallographic studies on damaged DNAs. II. N(6)-methoxyadenine can present two alternate faces for Watson-Crick base-pairing, leading to pyrimidine transition mutagenesis. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 294 _citation.page_first 1223 _citation.page_last 1230 _citation.year 1999 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10600380 _citation.pdbx_database_id_DOI 10.1006/jmbi.1999.3304 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chatake, T.' 1 ? primary 'Hikima, T.' 2 ? primary 'Ono, A.' 3 ? primary 'Ueno, Y.' 4 ? primary 'Matsuda, A.' 5 ? primary 'Takenaka, A.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*CP*GP*(A47)AP*AP*TP*TP*CP*GP*CP*G)-3'" 3693.418 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 4 water nat water 18.015 126 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(A47)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 SPERMINE SPM 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 A47 n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A47 'DNA linking' n ;N6-METHOXY ADENOSINE 5'-MONOPHOSPHATE ; ? 'C11 H16 N5 O7 P' 361.248 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 A47 5 5 5 A47 +A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 A47 5 17 17 A47 +A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 26 26 MG MO6 A . D 3 SPM 1 25 25 SPM SPM B . E 4 HOH 1 27 27 HOH HOH A . E 4 HOH 2 28 28 HOH HOH A . E 4 HOH 3 30 30 HOH HOH A . E 4 HOH 4 32 32 HOH HOH A . E 4 HOH 5 35 35 HOH HOH A . E 4 HOH 6 37 37 HOH HOH A . E 4 HOH 7 39 39 HOH HOH A . E 4 HOH 8 40 40 HOH HOH A . E 4 HOH 9 41 41 HOH HOH A . E 4 HOH 10 42 42 HOH HOH A . E 4 HOH 11 44 44 HOH HOH A . E 4 HOH 12 45 45 HOH HOH A . E 4 HOH 13 47 47 HOH HOH A . E 4 HOH 14 48 48 HOH HOH A . E 4 HOH 15 50 50 HOH HOH A . E 4 HOH 16 52 52 HOH HOH A . E 4 HOH 17 53 53 HOH HOH A . E 4 HOH 18 54 54 HOH HOH A . E 4 HOH 19 58 58 HOH HOH A . E 4 HOH 20 63 63 HOH HOH A . E 4 HOH 21 64 64 HOH HOH A . E 4 HOH 22 65 65 HOH HOH A . E 4 HOH 23 69 69 HOH HOH A . E 4 HOH 24 72 72 HOH HOH A . E 4 HOH 25 73 73 HOH HOH A . E 4 HOH 26 74 74 HOH HOH A . E 4 HOH 27 78 78 HOH HOH A . E 4 HOH 28 82 82 HOH HOH A . E 4 HOH 29 83 83 HOH HOH A . E 4 HOH 30 84 84 HOH HOH A . E 4 HOH 31 85 85 HOH HOH A . E 4 HOH 32 88 88 HOH HOH A . E 4 HOH 33 91 91 HOH HOH A . E 4 HOH 34 94 94 HOH HOH A . E 4 HOH 35 95 95 HOH HOH A . E 4 HOH 36 101 101 HOH HOH A . E 4 HOH 37 103 103 HOH HOH A . E 4 HOH 38 105 105 HOH HOH A . E 4 HOH 39 107 107 HOH HOH A . E 4 HOH 40 113 113 HOH HOH A . E 4 HOH 41 115 115 HOH HOH A . E 4 HOH 42 116 116 HOH HOH A . E 4 HOH 43 122 122 HOH HOH A . E 4 HOH 44 125 125 HOH HOH A . E 4 HOH 45 134 134 HOH HOH A . E 4 HOH 46 135 135 HOH HOH A . E 4 HOH 47 136 136 HOH HOH A . E 4 HOH 48 141 141 HOH HOH A . E 4 HOH 49 144 144 HOH HOH A . E 4 HOH 50 146 146 HOH HOH A . E 4 HOH 51 147 26 HOH MO6 A . E 4 HOH 52 148 26 HOH MO6 A . E 4 HOH 53 150 26 HOH MO6 A . E 4 HOH 54 152 26 HOH MO6 A . F 4 HOH 1 29 29 HOH HOH B . F 4 HOH 2 31 31 HOH HOH B . F 4 HOH 3 33 33 HOH HOH B . F 4 HOH 4 34 34 HOH HOH B . F 4 HOH 5 36 36 HOH HOH B . F 4 HOH 6 38 38 HOH HOH B . F 4 HOH 7 43 43 HOH HOH B . F 4 HOH 8 46 46 HOH HOH B . F 4 HOH 9 49 49 HOH HOH B . F 4 HOH 10 51 51 HOH HOH B . F 4 HOH 11 55 55 HOH HOH B . F 4 HOH 12 56 56 HOH HOH B . F 4 HOH 13 57 57 HOH HOH B . F 4 HOH 14 59 59 HOH HOH B . F 4 HOH 15 60 60 HOH HOH B . F 4 HOH 16 61 61 HOH HOH B . F 4 HOH 17 62 62 HOH HOH B . F 4 HOH 18 66 66 HOH HOH B . F 4 HOH 19 67 67 HOH HOH B . F 4 HOH 20 68 68 HOH HOH B . F 4 HOH 21 70 70 HOH HOH B . F 4 HOH 22 71 71 HOH HOH B . F 4 HOH 23 75 75 HOH HOH B . F 4 HOH 24 76 76 HOH HOH B . F 4 HOH 25 77 77 HOH HOH B . F 4 HOH 26 79 79 HOH HOH B . F 4 HOH 27 80 80 HOH HOH B . F 4 HOH 28 81 81 HOH HOH B . F 4 HOH 29 86 86 HOH HOH B . F 4 HOH 30 87 87 HOH HOH B . F 4 HOH 31 89 89 HOH HOH B . F 4 HOH 32 90 90 HOH HOH B . F 4 HOH 33 92 92 HOH HOH B . F 4 HOH 34 93 93 HOH HOH B . F 4 HOH 35 96 96 HOH HOH B . F 4 HOH 36 97 97 HOH HOH B . F 4 HOH 37 98 98 HOH HOH B . F 4 HOH 38 99 99 HOH HOH B . F 4 HOH 39 100 100 HOH HOH B . F 4 HOH 40 102 102 HOH HOH B . F 4 HOH 41 104 104 HOH HOH B . F 4 HOH 42 106 106 HOH HOH B . F 4 HOH 43 108 108 HOH HOH B . F 4 HOH 44 109 109 HOH HOH B . F 4 HOH 45 110 110 HOH HOH B . F 4 HOH 46 111 111 HOH HOH B . F 4 HOH 47 112 112 HOH HOH B . F 4 HOH 48 114 114 HOH HOH B . F 4 HOH 49 117 117 HOH HOH B . F 4 HOH 50 118 118 HOH HOH B . F 4 HOH 51 119 119 HOH HOH B . F 4 HOH 52 120 120 HOH HOH B . F 4 HOH 53 121 121 HOH HOH B . F 4 HOH 54 123 123 HOH HOH B . F 4 HOH 55 124 124 HOH HOH B . F 4 HOH 56 126 126 HOH HOH B . F 4 HOH 57 127 127 HOH HOH B . F 4 HOH 58 128 128 HOH HOH B . F 4 HOH 59 129 129 HOH HOH B . F 4 HOH 60 130 130 HOH HOH B . F 4 HOH 61 131 131 HOH HOH B . F 4 HOH 62 132 132 HOH HOH B . F 4 HOH 63 133 133 HOH HOH B . F 4 HOH 64 137 137 HOH HOH B . F 4 HOH 65 138 138 HOH HOH B . F 4 HOH 66 139 139 HOH HOH B . F 4 HOH 67 140 140 HOH HOH B . F 4 HOH 68 142 142 HOH HOH B . F 4 HOH 69 143 143 HOH HOH B . F 4 HOH 70 145 145 HOH HOH B . F 4 HOH 71 149 26 HOH MO6 B . F 4 HOH 72 151 26 HOH MO6 B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 X-PLOR refinement 3.840 ? 2 DENZO 'data reduction' . ? 3 CCP4 'data scaling' '(AGROVATA' ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 1EDR _cell.length_a 25.5 _cell.length_b 39.8 _cell.length_c 66.5 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EDR _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 # _exptl.entry_id 1EDR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.26 _exptl_crystal.density_Matthews 2.21 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;MPD, MAGNESIUM ACETATE, SPERMINE TETRAHYDROCHLORIDE, NACL, SODIUM CACODYLATE, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'MAGNESIUM ACETATE' ? ? ? 1 2 1 'SPERMINE TETRAHYDROCHLORIDE' ? ? ? 1 3 1 NACL ? ? ? 1 4 1 'SODIUM CACODYLATE' ? ? ? 1 5 1 MPD ? ? ? 1 6 2 MPD ? ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 110 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 DIFFRACTOMETER WEISSENBERG 1999-04-17 ? 2 'IMAGE PLATE' ;SAKABE'S WEISSSENBERG CAMERA ; 1999-06-20 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M ? 'SINGLE WAVELENGTH' x-ray 2 1 M ? 'SINGLE WAVELENGTH' x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'PHOTON FACTORY BEAMLINE BL-18B' 'Photon Factory' BL-18B 1.0000 ? 2 SYNCHROTRON 'PHOTON FACTORY BEAMLINE BL-18B' 'Photon Factory' BL-18B 1.0000 ? # _reflns.entry_id 1EDR _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 100 _reflns.d_resolution_high 1.60 _reflns.number_obs 7518 _reflns.number_all 7518 _reflns.percent_possible_obs 79.7 _reflns.pdbx_Rmerge_I_obs 0.036 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.4 _reflns.B_iso_Wilson_estimate 17.9 _reflns.pdbx_redundancy 3.8 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.69 _reflns_shell.percent_possible_all 61.9 _reflns_shell.Rmerge_I_obs 0.085 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 2.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1EDR _refine.ls_number_reflns_obs 6836 _refine.ls_number_reflns_all 7190 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 5.0 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 95.1 _refine.ls_R_factor_obs 0.218 _refine.ls_R_factor_all 0.222 _refine.ls_R_factor_R_work 0.211 _refine.ls_R_factor_R_free 0.27 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10 _refine.ls_number_reflns_R_free 690 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'PARKINSON ET AL.' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 120 _refine_hist.number_atoms_total 631 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 5.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1EDR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1EDR _struct.title 'MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATTCGCG) AT 1.6 ANGSTROM' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EDR _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, DEOXYRIBONUCLEIC ACID, MODIFIED NUCLEOTIDE, METHOXYADENOSINE, DAMAGED DNA, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1EDR _struct_ref.pdbx_db_accession 1EDR _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1EDR A 1 ? 12 ? 1EDR 1 ? 12 ? 1 12 2 1 1EDR B 1 ? 12 ? 1EDR 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 4 "O3'" ? ? ? 1_555 A A47 5 P ? ? A DG 4 A A47 5 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale one ? A A47 5 "O3'" ? ? ? 1_555 A DA 6 P ? ? A A47 5 A DA 6 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale3 covale both ? B DG 4 "O3'" ? ? ? 1_555 B A47 5 P ? ? B DG 16 B A47 17 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale4 covale one ? B A47 5 "O3'" ? ? ? 1_555 B DA 6 P ? ? B A47 17 B DA 18 1_555 ? ? ? ? ? ? ? 1.604 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 147 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 148 1_555 ? ? ? ? ? ? ? 2.063 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 150 1_555 ? ? ? ? ? ? ? 2.043 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 152 1_555 ? ? ? ? ? ? ? 2.047 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 26 B HOH 149 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 26 B HOH 151 1_555 ? ? ? ? ? ? ? 2.040 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A47 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A A47 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A47 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A A47 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B A47 5 N1 ? ? A DT 8 B A47 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B A47 5 N6 ? ? A DT 8 B A47 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 147 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 148 ? 1_555 178.8 ? 2 O ? E HOH . ? A HOH 147 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 150 ? 1_555 91.1 ? 3 O ? E HOH . ? A HOH 148 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 150 ? 1_555 90.0 ? 4 O ? E HOH . ? A HOH 147 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 152 ? 1_555 89.7 ? 5 O ? E HOH . ? A HOH 148 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 152 ? 1_555 90.0 ? 6 O ? E HOH . ? A HOH 150 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 152 ? 1_555 89.1 ? 7 O ? E HOH . ? A HOH 147 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 149 ? 1_555 88.3 ? 8 O ? E HOH . ? A HOH 148 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 149 ? 1_555 90.6 ? 9 O ? E HOH . ? A HOH 150 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 149 ? 1_555 179.2 ? 10 O ? E HOH . ? A HOH 152 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 149 ? 1_555 91.4 ? 11 O ? E HOH . ? A HOH 147 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 151 ? 1_555 90.4 ? 12 O ? E HOH . ? A HOH 148 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 151 ? 1_555 89.9 ? 13 O ? E HOH . ? A HOH 150 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 151 ? 1_555 89.7 ? 14 O ? E HOH . ? A HOH 152 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 151 ? 1_555 178.8 ? 15 O ? F HOH . ? B HOH 149 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 151 ? 1_555 89.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B SPM 25 ? 7 'BINDING SITE FOR RESIDUE SPM B 25' AC2 Software A MG 26 ? 6 'BINDING SITE FOR RESIDUE MG A 26' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 DG A 10 ? DG A 10 . ? 1_555 ? 2 AC1 7 HOH E . ? HOH A 48 . ? 1_555 ? 3 AC1 7 HOH E . ? HOH A 103 . ? 1_555 ? 4 AC1 7 DG B 2 ? DG B 14 . ? 1_555 ? 5 AC1 7 DC B 3 ? DC B 15 . ? 1_555 ? 6 AC1 7 DC B 11 ? DC B 23 . ? 2_655 ? 7 AC1 7 DG B 12 ? DG B 24 . ? 2_655 ? 8 AC2 6 HOH E . ? HOH A 147 . ? 1_555 ? 9 AC2 6 HOH E . ? HOH A 148 . ? 1_555 ? 10 AC2 6 HOH E . ? HOH A 150 . ? 1_555 ? 11 AC2 6 HOH E . ? HOH A 152 . ? 1_555 ? 12 AC2 6 HOH F . ? HOH B 149 . ? 1_555 ? 13 AC2 6 HOH F . ? HOH B 151 . ? 1_555 ? # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DC _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 11 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.079 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A A47 5 A A47 5 ? DA ;N6-METHOXY ADENOSINE 5'-MONOPHOSPHATE ; 2 B A47 5 B A47 17 ? DA ;N6-METHOXY ADENOSINE 5'-MONOPHOSPHATE ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A47 O3P O N N 1 A47 P P N N 2 A47 O1P O N N 3 A47 O2P O N N 4 A47 "O5'" O N N 5 A47 "C5'" C N N 6 A47 "C4'" C N R 7 A47 "O4'" O N N 8 A47 "C3'" C N S 9 A47 "O3'" O N N 10 A47 "C2'" C N N 11 A47 "C1'" C N R 12 A47 N9 N Y N 13 A47 C8 C Y N 14 A47 N7 N Y N 15 A47 C5 C Y N 16 A47 C6 C Y N 17 A47 N6 N N N 18 A47 N1 N Y N 19 A47 C2 C Y N 20 A47 N3 N Y N 21 A47 C4 C Y N 22 A47 O1 O N N 23 A47 C1 C N N 24 A47 H1P H N N 25 A47 H2P H N N 26 A47 "H5'1" H N N 27 A47 "H5'2" H N N 28 A47 "H4'" H N N 29 A47 "H3'" H N N 30 A47 HA H N N 31 A47 "H2'1" H N N 32 A47 "H2'2" H N N 33 A47 "H1'" H N N 34 A47 H8 H N N 35 A47 H6 H N N 36 A47 H2 H N N 37 A47 H1C1 H N N 38 A47 H1C2 H N N 39 A47 H1C3 H N N 40 DA OP3 O N N 41 DA P P N N 42 DA OP1 O N N 43 DA OP2 O N N 44 DA "O5'" O N N 45 DA "C5'" C N N 46 DA "C4'" C N R 47 DA "O4'" O N N 48 DA "C3'" C N S 49 DA "O3'" O N N 50 DA "C2'" C N N 51 DA "C1'" C N R 52 DA N9 N Y N 53 DA C8 C Y N 54 DA N7 N Y N 55 DA C5 C Y N 56 DA C6 C Y N 57 DA N6 N N N 58 DA N1 N Y N 59 DA C2 C Y N 60 DA N3 N Y N 61 DA C4 C Y N 62 DA HOP3 H N N 63 DA HOP2 H N N 64 DA "H5'" H N N 65 DA "H5''" H N N 66 DA "H4'" H N N 67 DA "H3'" H N N 68 DA "HO3'" H N N 69 DA "H2'" H N N 70 DA "H2''" H N N 71 DA "H1'" H N N 72 DA H8 H N N 73 DA H61 H N N 74 DA H62 H N N 75 DA H2 H N N 76 DC OP3 O N N 77 DC P P N N 78 DC OP1 O N N 79 DC OP2 O N N 80 DC "O5'" O N N 81 DC "C5'" C N N 82 DC "C4'" C N R 83 DC "O4'" O N N 84 DC "C3'" C N S 85 DC "O3'" O N N 86 DC "C2'" C N N 87 DC "C1'" C N R 88 DC N1 N N N 89 DC C2 C N N 90 DC O2 O N N 91 DC N3 N N N 92 DC C4 C N N 93 DC N4 N N N 94 DC C5 C N N 95 DC C6 C N N 96 DC HOP3 H N N 97 DC HOP2 H N N 98 DC "H5'" H N N 99 DC "H5''" H N N 100 DC "H4'" H N N 101 DC "H3'" H N N 102 DC "HO3'" H N N 103 DC "H2'" H N N 104 DC "H2''" H N N 105 DC "H1'" H N N 106 DC H41 H N N 107 DC H42 H N N 108 DC H5 H N N 109 DC H6 H N N 110 DG OP3 O N N 111 DG P P N N 112 DG OP1 O N N 113 DG OP2 O N N 114 DG "O5'" O N N 115 DG "C5'" C N N 116 DG "C4'" C N R 117 DG "O4'" O N N 118 DG "C3'" C N S 119 DG "O3'" O N N 120 DG "C2'" C N N 121 DG "C1'" C N R 122 DG N9 N Y N 123 DG C8 C Y N 124 DG N7 N Y N 125 DG C5 C Y N 126 DG C6 C N N 127 DG O6 O N N 128 DG N1 N N N 129 DG C2 C N N 130 DG N2 N N N 131 DG N3 N N N 132 DG C4 C Y N 133 DG HOP3 H N N 134 DG HOP2 H N N 135 DG "H5'" H N N 136 DG "H5''" H N N 137 DG "H4'" H N N 138 DG "H3'" H N N 139 DG "HO3'" H N N 140 DG "H2'" H N N 141 DG "H2''" H N N 142 DG "H1'" H N N 143 DG H8 H N N 144 DG H1 H N N 145 DG H21 H N N 146 DG H22 H N N 147 DT OP3 O N N 148 DT P P N N 149 DT OP1 O N N 150 DT OP2 O N N 151 DT "O5'" O N N 152 DT "C5'" C N N 153 DT "C4'" C N R 154 DT "O4'" O N N 155 DT "C3'" C N S 156 DT "O3'" O N N 157 DT "C2'" C N N 158 DT "C1'" C N R 159 DT N1 N N N 160 DT C2 C N N 161 DT O2 O N N 162 DT N3 N N N 163 DT C4 C N N 164 DT O4 O N N 165 DT C5 C N N 166 DT C7 C N N 167 DT C6 C N N 168 DT HOP3 H N N 169 DT HOP2 H N N 170 DT "H5'" H N N 171 DT "H5''" H N N 172 DT "H4'" H N N 173 DT "H3'" H N N 174 DT "HO3'" H N N 175 DT "H2'" H N N 176 DT "H2''" H N N 177 DT "H1'" H N N 178 DT H3 H N N 179 DT H71 H N N 180 DT H72 H N N 181 DT H73 H N N 182 DT H6 H N N 183 HOH O O N N 184 HOH H1 H N N 185 HOH H2 H N N 186 MG MG MG N N 187 SPM N1 N N N 188 SPM C2 C N N 189 SPM C3 C N N 190 SPM C4 C N N 191 SPM N5 N N N 192 SPM C6 C N N 193 SPM C7 C N N 194 SPM C8 C N N 195 SPM C9 C N N 196 SPM N10 N N N 197 SPM C11 C N N 198 SPM C12 C N N 199 SPM C13 C N N 200 SPM N14 N N N 201 SPM HN11 H N N 202 SPM HN12 H N N 203 SPM H21 H N N 204 SPM H22 H N N 205 SPM H31 H N N 206 SPM H32 H N N 207 SPM H41 H N N 208 SPM H42 H N N 209 SPM HN5 H N N 210 SPM H61 H N N 211 SPM H62 H N N 212 SPM H71 H N N 213 SPM H72 H N N 214 SPM H81 H N N 215 SPM H82 H N N 216 SPM H91 H N N 217 SPM H92 H N N 218 SPM HN0 H N N 219 SPM H111 H N N 220 SPM H112 H N N 221 SPM H121 H N N 222 SPM H122 H N N 223 SPM H131 H N N 224 SPM H132 H N N 225 SPM HN41 H N N 226 SPM HN42 H N N 227 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A47 O3P P doub N N 1 A47 P O1P sing N N 2 A47 P O2P sing N N 3 A47 P "O5'" sing N N 4 A47 O1P H1P sing N N 5 A47 O2P H2P sing N N 6 A47 "O5'" "C5'" sing N N 7 A47 "C5'" "C4'" sing N N 8 A47 "C5'" "H5'1" sing N N 9 A47 "C5'" "H5'2" sing N N 10 A47 "C4'" "O4'" sing N N 11 A47 "C4'" "C3'" sing N N 12 A47 "C4'" "H4'" sing N N 13 A47 "O4'" "C1'" sing N N 14 A47 "C3'" "O3'" sing N N 15 A47 "C3'" "C2'" sing N N 16 A47 "C3'" "H3'" sing N N 17 A47 "O3'" HA sing N N 18 A47 "C2'" "C1'" sing N N 19 A47 "C2'" "H2'1" sing N N 20 A47 "C2'" "H2'2" sing N N 21 A47 "C1'" N9 sing N N 22 A47 "C1'" "H1'" sing N N 23 A47 N9 C8 sing Y N 24 A47 N9 C4 sing Y N 25 A47 C8 N7 doub Y N 26 A47 C8 H8 sing N N 27 A47 N7 C5 sing Y N 28 A47 C5 C6 doub Y N 29 A47 C5 C4 sing Y N 30 A47 C6 N6 sing N N 31 A47 C6 N1 sing Y N 32 A47 N6 O1 sing N N 33 A47 N6 H6 sing N N 34 A47 N1 C2 doub Y N 35 A47 C2 N3 sing Y N 36 A47 C2 H2 sing N N 37 A47 N3 C4 doub Y N 38 A47 O1 C1 sing N N 39 A47 C1 H1C1 sing N N 40 A47 C1 H1C2 sing N N 41 A47 C1 H1C3 sing N N 42 DA OP3 P sing N N 43 DA OP3 HOP3 sing N N 44 DA P OP1 doub N N 45 DA P OP2 sing N N 46 DA P "O5'" sing N N 47 DA OP2 HOP2 sing N N 48 DA "O5'" "C5'" sing N N 49 DA "C5'" "C4'" sing N N 50 DA "C5'" "H5'" sing N N 51 DA "C5'" "H5''" sing N N 52 DA "C4'" "O4'" sing N N 53 DA "C4'" "C3'" sing N N 54 DA "C4'" "H4'" sing N N 55 DA "O4'" "C1'" sing N N 56 DA "C3'" "O3'" sing N N 57 DA "C3'" "C2'" sing N N 58 DA "C3'" "H3'" sing N N 59 DA "O3'" "HO3'" sing N N 60 DA "C2'" "C1'" sing N N 61 DA "C2'" "H2'" sing N N 62 DA "C2'" "H2''" sing N N 63 DA "C1'" N9 sing N N 64 DA "C1'" "H1'" sing N N 65 DA N9 C8 sing Y N 66 DA N9 C4 sing Y N 67 DA C8 N7 doub Y N 68 DA C8 H8 sing N N 69 DA N7 C5 sing Y N 70 DA C5 C6 sing Y N 71 DA C5 C4 doub Y N 72 DA C6 N6 sing N N 73 DA C6 N1 doub Y N 74 DA N6 H61 sing N N 75 DA N6 H62 sing N N 76 DA N1 C2 sing Y N 77 DA C2 N3 doub Y N 78 DA C2 H2 sing N N 79 DA N3 C4 sing Y N 80 DC OP3 P sing N N 81 DC OP3 HOP3 sing N N 82 DC P OP1 doub N N 83 DC P OP2 sing N N 84 DC P "O5'" sing N N 85 DC OP2 HOP2 sing N N 86 DC "O5'" "C5'" sing N N 87 DC "C5'" "C4'" sing N N 88 DC "C5'" "H5'" sing N N 89 DC "C5'" "H5''" sing N N 90 DC "C4'" "O4'" sing N N 91 DC "C4'" "C3'" sing N N 92 DC "C4'" "H4'" sing N N 93 DC "O4'" "C1'" sing N N 94 DC "C3'" "O3'" sing N N 95 DC "C3'" "C2'" sing N N 96 DC "C3'" "H3'" sing N N 97 DC "O3'" "HO3'" sing N N 98 DC "C2'" "C1'" sing N N 99 DC "C2'" "H2'" sing N N 100 DC "C2'" "H2''" sing N N 101 DC "C1'" N1 sing N N 102 DC "C1'" "H1'" sing N N 103 DC N1 C2 sing N N 104 DC N1 C6 sing N N 105 DC C2 O2 doub N N 106 DC C2 N3 sing N N 107 DC N3 C4 doub N N 108 DC C4 N4 sing N N 109 DC C4 C5 sing N N 110 DC N4 H41 sing N N 111 DC N4 H42 sing N N 112 DC C5 C6 doub N N 113 DC C5 H5 sing N N 114 DC C6 H6 sing N N 115 DG OP3 P sing N N 116 DG OP3 HOP3 sing N N 117 DG P OP1 doub N N 118 DG P OP2 sing N N 119 DG P "O5'" sing N N 120 DG OP2 HOP2 sing N N 121 DG "O5'" "C5'" sing N N 122 DG "C5'" "C4'" sing N N 123 DG "C5'" "H5'" sing N N 124 DG "C5'" "H5''" sing N N 125 DG "C4'" "O4'" sing N N 126 DG "C4'" "C3'" sing N N 127 DG "C4'" "H4'" sing N N 128 DG "O4'" "C1'" sing N N 129 DG "C3'" "O3'" sing N N 130 DG "C3'" "C2'" sing N N 131 DG "C3'" "H3'" sing N N 132 DG "O3'" "HO3'" sing N N 133 DG "C2'" "C1'" sing N N 134 DG "C2'" "H2'" sing N N 135 DG "C2'" "H2''" sing N N 136 DG "C1'" N9 sing N N 137 DG "C1'" "H1'" sing N N 138 DG N9 C8 sing Y N 139 DG N9 C4 sing Y N 140 DG C8 N7 doub Y N 141 DG C8 H8 sing N N 142 DG N7 C5 sing Y N 143 DG C5 C6 sing N N 144 DG C5 C4 doub Y N 145 DG C6 O6 doub N N 146 DG C6 N1 sing N N 147 DG N1 C2 sing N N 148 DG N1 H1 sing N N 149 DG C2 N2 sing N N 150 DG C2 N3 doub N N 151 DG N2 H21 sing N N 152 DG N2 H22 sing N N 153 DG N3 C4 sing N N 154 DT OP3 P sing N N 155 DT OP3 HOP3 sing N N 156 DT P OP1 doub N N 157 DT P OP2 sing N N 158 DT P "O5'" sing N N 159 DT OP2 HOP2 sing N N 160 DT "O5'" "C5'" sing N N 161 DT "C5'" "C4'" sing N N 162 DT "C5'" "H5'" sing N N 163 DT "C5'" "H5''" sing N N 164 DT "C4'" "O4'" sing N N 165 DT "C4'" "C3'" sing N N 166 DT "C4'" "H4'" sing N N 167 DT "O4'" "C1'" sing N N 168 DT "C3'" "O3'" sing N N 169 DT "C3'" "C2'" sing N N 170 DT "C3'" "H3'" sing N N 171 DT "O3'" "HO3'" sing N N 172 DT "C2'" "C1'" sing N N 173 DT "C2'" "H2'" sing N N 174 DT "C2'" "H2''" sing N N 175 DT "C1'" N1 sing N N 176 DT "C1'" "H1'" sing N N 177 DT N1 C2 sing N N 178 DT N1 C6 sing N N 179 DT C2 O2 doub N N 180 DT C2 N3 sing N N 181 DT N3 C4 sing N N 182 DT N3 H3 sing N N 183 DT C4 O4 doub N N 184 DT C4 C5 sing N N 185 DT C5 C7 sing N N 186 DT C5 C6 doub N N 187 DT C7 H71 sing N N 188 DT C7 H72 sing N N 189 DT C7 H73 sing N N 190 DT C6 H6 sing N N 191 HOH O H1 sing N N 192 HOH O H2 sing N N 193 SPM N1 C2 sing N N 194 SPM N1 HN11 sing N N 195 SPM N1 HN12 sing N N 196 SPM C2 C3 sing N N 197 SPM C2 H21 sing N N 198 SPM C2 H22 sing N N 199 SPM C3 C4 sing N N 200 SPM C3 H31 sing N N 201 SPM C3 H32 sing N N 202 SPM C4 N5 sing N N 203 SPM C4 H41 sing N N 204 SPM C4 H42 sing N N 205 SPM N5 C6 sing N N 206 SPM N5 HN5 sing N N 207 SPM C6 C7 sing N N 208 SPM C6 H61 sing N N 209 SPM C6 H62 sing N N 210 SPM C7 C8 sing N N 211 SPM C7 H71 sing N N 212 SPM C7 H72 sing N N 213 SPM C8 C9 sing N N 214 SPM C8 H81 sing N N 215 SPM C8 H82 sing N N 216 SPM C9 N10 sing N N 217 SPM C9 H91 sing N N 218 SPM C9 H92 sing N N 219 SPM N10 C11 sing N N 220 SPM N10 HN0 sing N N 221 SPM C11 C12 sing N N 222 SPM C11 H111 sing N N 223 SPM C11 H112 sing N N 224 SPM C12 C13 sing N N 225 SPM C12 H121 sing N N 226 SPM C12 H122 sing N N 227 SPM C13 N14 sing N N 228 SPM C13 H131 sing N N 229 SPM C13 H132 sing N N 230 SPM N14 HN41 sing N N 231 SPM N14 HN42 sing N N 232 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1EDR 'double helix' 1EDR 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.552 -0.138 0.134 5.996 -17.868 0.881 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.201 -0.183 0.485 7.137 -12.087 -2.224 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.256 -0.078 0.262 -7.877 -5.354 0.694 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.370 -0.044 -0.041 8.527 -6.033 2.250 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A A47 5 1_555 B DT 8 1_555 -0.161 -0.131 -0.023 0.534 -16.098 2.155 5 A_A475:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.066 -0.063 0.185 1.170 -15.347 5.244 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.034 -0.114 0.126 -1.445 -17.084 3.530 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B A47 5 1_555 0.044 -0.148 -0.130 1.181 -14.889 2.720 8 A_DT8:A4717_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.394 -0.014 0.161 -12.575 -5.083 1.732 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.206 -0.083 0.205 9.167 -6.786 2.813 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.058 -0.082 0.042 7.095 -19.530 -1.786 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.371 -0.052 0.227 0.916 -11.140 -0.059 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.040 0.065 3.234 -3.225 6.144 33.016 -0.878 -0.452 3.184 10.665 5.598 33.718 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.501 0.445 3.715 1.313 -7.066 43.560 1.340 -0.529 3.616 -9.445 -1.755 44.121 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.211 0.456 2.996 1.895 10.695 24.723 -1.602 0.909 2.914 23.578 -4.178 26.970 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A A47 5 1_555 B DT 8 1_555 -0.158 -0.344 3.534 0.154 -0.354 38.475 -0.475 0.260 3.536 -0.538 -0.234 38.477 4 AA_DG4A475:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A A47 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.063 -0.391 3.189 -1.850 -0.647 37.384 -0.526 -0.335 3.188 -1.009 2.885 37.433 5 AA_A475DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 -0.087 -0.736 3.244 1.006 -1.546 30.831 -1.082 0.359 3.272 -2.904 -1.891 30.885 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B A47 5 1_555 -0.039 -0.407 3.137 1.840 -1.282 36.092 -0.481 0.312 3.143 -2.066 -2.966 36.160 7 AA_DT7DT8:A4717DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B A47 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.017 -0.340 3.684 -1.816 -4.810 40.838 0.106 -0.198 3.696 -6.861 2.589 41.147 8 AA_DT8DC9:DG16A4717_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.507 0.506 2.910 -0.420 5.565 24.304 -0.337 -1.289 2.941 12.999 0.981 24.927 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.348 0.623 3.420 -2.080 -11.841 43.004 1.945 1.580 3.207 -15.787 2.773 44.576 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 0.100 0.177 3.428 -1.966 6.913 32.359 -0.915 -0.525 3.381 12.217 3.474 33.126 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 1EDR _atom_sites.fract_transf_matrix[1][1] 0.039216 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025126 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015038 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_