data_1EF5 # _entry.id 1EF5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1EF5 pdb_00001ef5 10.2210/pdb1ef5/pdb RCSB RCSB010517 ? ? WWPDB D_1000010517 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id trt001000187.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EF5 _pdbx_database_status.recvd_initial_deposition_date 2000-02-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kigawa, T.' 1 'Endo, M.' 2 'Ito, Y.' 3 'Shirouzu, M.' 4 'Kikuchi, A.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structure of the Ras-binding domain of RGL.' _citation.journal_abbrev 'FEBS Lett.' _citation.journal_volume 441 _citation.page_first 413 _citation.page_last 418 _citation.year 1998 _citation.journal_id_ASTM FEBLAL _citation.country NE _citation.journal_id_ISSN 0014-5793 _citation.journal_id_CSD 0165 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9891982 _citation.pdbx_database_id_DOI '10.1016/S0014-5793(98)01596-8' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kigawa, T.' 1 ? primary 'Endo, M.' 2 ? primary 'Ito, Y.' 3 ? primary 'Shirouzu, M.' 4 ? primary 'Kikuchi, A.' 5 ? primary 'Yokoyama, S.' 6 ? # _cell.entry_id 1EF5 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EF5 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description RGL _entity.formula_weight 11737.146 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RAS-BINDING DOMAIN' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SITSTVLPPVYNQQNEDTCIIRISVEDNNGNMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVISEDKELVIP DSANVFYAMNSQVNFDFILRKKN ; _entity_poly.pdbx_seq_one_letter_code_can ;SITSTVLPPVYNQQNEDTCIIRISVEDNNGNMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVISEDKELVIP DSANVFYAMNSQVNFDFILRKKN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier trt001000187.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ILE n 1 3 THR n 1 4 SER n 1 5 THR n 1 6 VAL n 1 7 LEU n 1 8 PRO n 1 9 PRO n 1 10 VAL n 1 11 TYR n 1 12 ASN n 1 13 GLN n 1 14 GLN n 1 15 ASN n 1 16 GLU n 1 17 ASP n 1 18 THR n 1 19 CYS n 1 20 ILE n 1 21 ILE n 1 22 ARG n 1 23 ILE n 1 24 SER n 1 25 VAL n 1 26 GLU n 1 27 ASP n 1 28 ASN n 1 29 ASN n 1 30 GLY n 1 31 ASN n 1 32 MET n 1 33 TYR n 1 34 LYS n 1 35 SER n 1 36 ILE n 1 37 MET n 1 38 LEU n 1 39 THR n 1 40 SER n 1 41 GLN n 1 42 ASP n 1 43 LYS n 1 44 THR n 1 45 PRO n 1 46 ALA n 1 47 VAL n 1 48 ILE n 1 49 GLN n 1 50 ARG n 1 51 ALA n 1 52 MET n 1 53 SER n 1 54 LYS n 1 55 HIS n 1 56 ASN n 1 57 LEU n 1 58 GLU n 1 59 SER n 1 60 ASP n 1 61 PRO n 1 62 ALA n 1 63 GLU n 1 64 GLU n 1 65 TYR n 1 66 GLU n 1 67 LEU n 1 68 VAL n 1 69 GLN n 1 70 VAL n 1 71 ILE n 1 72 SER n 1 73 GLU n 1 74 ASP n 1 75 LYS n 1 76 GLU n 1 77 LEU n 1 78 VAL n 1 79 ILE n 1 80 PRO n 1 81 ASP n 1 82 SER n 1 83 ALA n 1 84 ASN n 1 85 VAL n 1 86 PHE n 1 87 TYR n 1 88 ALA n 1 89 MET n 1 90 ASN n 1 91 SER n 1 92 GLN n 1 93 VAL n 1 94 ASN n 1 95 PHE n 1 96 ASP n 1 97 PHE n 1 98 ILE n 1 99 LEU n 1 100 ARG n 1 101 LYS n 1 102 LYS n 1 103 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain DH5ALPHA _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PGEX2T _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RGL1_MOUSE _struct_ref.pdbx_db_accession Q60695 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SITSTVLPPVYNQQNEDTCIIRISVEDNNGHMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVISEDKELVIP DSANVFYAMNSQVNFDFILRKKN ; _struct_ref.pdbx_align_begin 632 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1EF5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 103 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q60695 _struct_ref_seq.db_align_beg 632 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 734 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 632 _struct_ref_seq.pdbx_auth_seq_align_end 734 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1EF5 _struct_ref_seq_dif.mon_id ASN _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 31 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q60695 _struct_ref_seq_dif.db_mon_id HIS _struct_ref_seq_dif.pdbx_seq_db_seq_num 662 _struct_ref_seq_dif.details 'see remark 999' _struct_ref_seq_dif.pdbx_auth_seq_num 662 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY 3 1 1 HNHB # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 200mM _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.5mM RGL-RBD U-15N,13C; 50mM Tris-HCl; 5mM DTT; 10mM MgCl2; 200mM NaCl; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker AMX 600 2 ? Bruker DMX 500 # _pdbx_nmr_refine.entry_id 1EF5 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;the structures are based on a total of 1309 restraints, 1211 are NOE-derived distance constraints, 56 dihedral angle restraints, 42 distance restraints from hydrogen bonds. N-terminal residues 632-646 are not defined by NMR restraints and excluded from the coordinate file. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1EF5 _pdbx_nmr_details.text 'The structure was determined using triple-resonance NMR spectroscopy.' # _pdbx_nmr_ensemble.entry_id 1EF5 _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_representative.entry_id 1EF5 _pdbx_nmr_representative.conformer_id ? _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal UXNMR ? collection 'Bruker, AG.' 1 XwinNMR 1.3 collection 'Bruker, AG.' 2 Azara 1.0 processing Boucher 3 Felix 95 'data analysis' 'MSI, Inc.' 4 X-PLOR 3.1 'structure solution' Brunger 5 X-PLOR 3.1 refinement Brunger 6 # _exptl.entry_id 1EF5 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1EF5 _struct.title 'SOLUTION STRUCTURE OF THE RAS-BINDING DOMAIN OF RGL' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1EF5 _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;RAS-BINDING DOMAIN, RGL, RAS, RBD, RA, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, SIGNALING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 44 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id MET _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 52 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 675 _struct_conf.end_auth_comp_id MET _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 683 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 21 ? VAL A 25 ? ILE A 652 VAL A 656 A 2 PHE A 95 ? LYS A 101 ? PHE A 726 LYS A 732 A 3 TYR A 65 ? VAL A 70 ? TYR A 696 VAL A 701 A 4 LEU A 77 ? VAL A 78 ? LEU A 708 VAL A 709 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 22 ? N ARG A 653 O PHE A 95 ? O PHE A 726 A 2 3 N ARG A 100 ? N ARG A 731 O GLU A 66 ? O GLU A 697 A 3 4 N GLN A 69 ? N GLN A 700 O LEU A 77 ? O LEU A 708 # _database_PDB_matrix.entry_id 1EF5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1EF5 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 632 ? ? ? A . n A 1 2 ILE 2 633 ? ? ? A . n A 1 3 THR 3 634 ? ? ? A . n A 1 4 SER 4 635 ? ? ? A . n A 1 5 THR 5 636 ? ? ? A . n A 1 6 VAL 6 637 ? ? ? A . n A 1 7 LEU 7 638 ? ? ? A . n A 1 8 PRO 8 639 ? ? ? A . n A 1 9 PRO 9 640 ? ? ? A . n A 1 10 VAL 10 641 ? ? ? A . n A 1 11 TYR 11 642 ? ? ? A . n A 1 12 ASN 12 643 ? ? ? A . n A 1 13 GLN 13 644 ? ? ? A . n A 1 14 GLN 14 645 ? ? ? A . n A 1 15 ASN 15 646 ? ? ? A . n A 1 16 GLU 16 647 647 GLU GLU A . n A 1 17 ASP 17 648 648 ASP ASP A . n A 1 18 THR 18 649 649 THR THR A . n A 1 19 CYS 19 650 650 CYS CYS A . n A 1 20 ILE 20 651 651 ILE ILE A . n A 1 21 ILE 21 652 652 ILE ILE A . n A 1 22 ARG 22 653 653 ARG ARG A . n A 1 23 ILE 23 654 654 ILE ILE A . n A 1 24 SER 24 655 655 SER SER A . n A 1 25 VAL 25 656 656 VAL VAL A . n A 1 26 GLU 26 657 657 GLU GLU A . n A 1 27 ASP 27 658 658 ASP ASP A . n A 1 28 ASN 28 659 659 ASN ASN A . n A 1 29 ASN 29 660 660 ASN ASN A . n A 1 30 GLY 30 661 661 GLY GLY A . n A 1 31 ASN 31 662 662 ASN ASN A . n A 1 32 MET 32 663 663 MET MET A . n A 1 33 TYR 33 664 664 TYR TYR A . n A 1 34 LYS 34 665 665 LYS LYS A . n A 1 35 SER 35 666 666 SER SER A . n A 1 36 ILE 36 667 667 ILE ILE A . n A 1 37 MET 37 668 668 MET MET A . n A 1 38 LEU 38 669 669 LEU LEU A . n A 1 39 THR 39 670 670 THR THR A . n A 1 40 SER 40 671 671 SER SER A . n A 1 41 GLN 41 672 672 GLN GLN A . n A 1 42 ASP 42 673 673 ASP ASP A . n A 1 43 LYS 43 674 674 LYS LYS A . n A 1 44 THR 44 675 675 THR THR A . n A 1 45 PRO 45 676 676 PRO PRO A . n A 1 46 ALA 46 677 677 ALA ALA A . n A 1 47 VAL 47 678 678 VAL VAL A . n A 1 48 ILE 48 679 679 ILE ILE A . n A 1 49 GLN 49 680 680 GLN GLN A . n A 1 50 ARG 50 681 681 ARG ARG A . n A 1 51 ALA 51 682 682 ALA ALA A . n A 1 52 MET 52 683 683 MET MET A . n A 1 53 SER 53 684 684 SER SER A . n A 1 54 LYS 54 685 685 LYS LYS A . n A 1 55 HIS 55 686 686 HIS HIS A . n A 1 56 ASN 56 687 687 ASN ASN A . n A 1 57 LEU 57 688 688 LEU LEU A . n A 1 58 GLU 58 689 689 GLU GLU A . n A 1 59 SER 59 690 690 SER SER A . n A 1 60 ASP 60 691 691 ASP ASP A . n A 1 61 PRO 61 692 692 PRO PRO A . n A 1 62 ALA 62 693 693 ALA ALA A . n A 1 63 GLU 63 694 694 GLU GLU A . n A 1 64 GLU 64 695 695 GLU GLU A . n A 1 65 TYR 65 696 696 TYR TYR A . n A 1 66 GLU 66 697 697 GLU GLU A . n A 1 67 LEU 67 698 698 LEU LEU A . n A 1 68 VAL 68 699 699 VAL VAL A . n A 1 69 GLN 69 700 700 GLN GLN A . n A 1 70 VAL 70 701 701 VAL VAL A . n A 1 71 ILE 71 702 702 ILE ILE A . n A 1 72 SER 72 703 703 SER SER A . n A 1 73 GLU 73 704 704 GLU GLU A . n A 1 74 ASP 74 705 705 ASP ASP A . n A 1 75 LYS 75 706 706 LYS LYS A . n A 1 76 GLU 76 707 707 GLU GLU A . n A 1 77 LEU 77 708 708 LEU LEU A . n A 1 78 VAL 78 709 709 VAL VAL A . n A 1 79 ILE 79 710 710 ILE ILE A . n A 1 80 PRO 80 711 711 PRO PRO A . n A 1 81 ASP 81 712 712 ASP ASP A . n A 1 82 SER 82 713 713 SER SER A . n A 1 83 ALA 83 714 714 ALA ALA A . n A 1 84 ASN 84 715 715 ASN ASN A . n A 1 85 VAL 85 716 716 VAL VAL A . n A 1 86 PHE 86 717 717 PHE PHE A . n A 1 87 TYR 87 718 718 TYR TYR A . n A 1 88 ALA 88 719 719 ALA ALA A . n A 1 89 MET 89 720 720 MET MET A . n A 1 90 ASN 90 721 721 ASN ASN A . n A 1 91 SER 91 722 722 SER SER A . n A 1 92 GLN 92 723 723 GLN GLN A . n A 1 93 VAL 93 724 724 VAL VAL A . n A 1 94 ASN 94 725 725 ASN ASN A . n A 1 95 PHE 95 726 726 PHE PHE A . n A 1 96 ASP 96 727 727 ASP ASP A . n A 1 97 PHE 97 728 728 PHE PHE A . n A 1 98 ILE 98 729 729 ILE ILE A . n A 1 99 LEU 99 730 730 LEU LEU A . n A 1 100 ARG 100 731 731 ARG ARG A . n A 1 101 LYS 101 732 732 LYS LYS A . n A 1 102 LYS 102 733 733 LYS LYS A . n A 1 103 ASN 103 734 734 ASN ASN A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-02-23 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 648 ? ? 45.05 84.58 2 1 VAL A 656 ? ? -101.72 56.50 3 1 GLU A 657 ? ? -154.76 64.72 4 1 ASP A 658 ? ? 42.06 -142.96 5 1 ASN A 659 ? ? 57.64 114.19 6 1 TYR A 664 ? ? -110.05 -78.17 7 1 SER A 666 ? ? 173.09 48.72 8 1 LEU A 669 ? ? -44.17 169.31 9 1 SER A 671 ? ? 170.13 58.30 10 1 GLN A 672 ? ? -179.50 104.71 11 1 ASP A 673 ? ? 170.29 139.94 12 1 LYS A 674 ? ? -174.74 -75.72 13 1 THR A 675 ? ? -38.70 -179.55 14 1 PRO A 676 ? ? -28.20 -27.51 15 1 MET A 683 ? ? -90.06 -72.28 16 1 LYS A 685 ? ? -61.92 -84.37 17 1 HIS A 686 ? ? -48.34 -86.12 18 1 ASN A 687 ? ? 159.31 56.59 19 1 LEU A 688 ? ? -125.71 -163.86 20 1 GLU A 689 ? ? -40.19 165.45 21 1 ASP A 691 ? ? 51.86 125.54 22 1 PRO A 692 ? ? -87.22 32.69 23 1 ALA A 693 ? ? -55.90 -102.43 24 1 ILE A 702 ? ? -121.13 -88.69 25 1 GLU A 704 ? ? 56.67 -94.08 26 1 LYS A 706 ? ? -155.23 76.62 27 1 ILE A 710 ? ? 58.39 151.04 28 1 PRO A 711 ? ? -64.18 -159.57 29 1 VAL A 716 ? ? -40.67 91.74 30 1 PHE A 717 ? ? 171.90 -62.05 31 1 ASN A 721 ? ? -177.10 -151.50 32 1 GLN A 723 ? ? 178.12 105.92 33 1 VAL A 724 ? ? 38.24 -162.38 34 1 LYS A 733 ? ? -151.93 -152.37 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 653 ? ? 0.216 'SIDE CHAIN' 2 1 ARG A 681 ? ? 0.185 'SIDE CHAIN' 3 1 ARG A 731 ? ? 0.310 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 632 ? A SER 1 2 1 Y 1 A ILE 633 ? A ILE 2 3 1 Y 1 A THR 634 ? A THR 3 4 1 Y 1 A SER 635 ? A SER 4 5 1 Y 1 A THR 636 ? A THR 5 6 1 Y 1 A VAL 637 ? A VAL 6 7 1 Y 1 A LEU 638 ? A LEU 7 8 1 Y 1 A PRO 639 ? A PRO 8 9 1 Y 1 A PRO 640 ? A PRO 9 10 1 Y 1 A VAL 641 ? A VAL 10 11 1 Y 1 A TYR 642 ? A TYR 11 12 1 Y 1 A ASN 643 ? A ASN 12 13 1 Y 1 A GLN 644 ? A GLN 13 14 1 Y 1 A GLN 645 ? A GLN 14 15 1 Y 1 A ASN 646 ? A ASN 15 #