data_1EFS # _entry.id 1EFS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1EFS pdb_00001efs 10.2210/pdb1efs/pdb RCSB RCSB010533 ? ? WWPDB D_1000010533 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-03-06 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_nmr_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EFS _pdbx_database_status.recvd_initial_deposition_date 2000-02-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Larue, V.' 1 'Hantz, E.' 2 # _citation.id primary _citation.title 'Solution conformation of an RNA--DNA hybrid duplex containing a pyrimidine RNA strand and a purine DNA strand.' _citation.journal_abbrev Int.J.Biol.Macromol. _citation.journal_volume 28 _citation.page_first 273 _citation.page_last 284 _citation.year 2001 _citation.journal_id_ASTM IJBMDR _citation.country UK _citation.journal_id_ISSN 0141-8130 _citation.journal_id_CSD 0708 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11311717 _citation.pdbx_database_id_DOI '10.1016/S0141-8130(01)00123-4' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hantz, E.' 1 ? primary 'Larue, V.' 2 ? primary 'Ladam, P.' 3 ? primary 'Le Moyec, L.' 4 ? primary 'Gouyette, C.' 5 ? primary 'Huynh Dinh, T.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*AP*GP*AP*GP*GP*AP*AP*GP*AP*GP*AP*A)-3') ; 4122.724 1 ? ? ? ? 2 polymer syn ;RNA (5'-R(*UP*UP*CP*UP*CP*UP*UP*CP*CP*UP*CP*UP*C)-3') ; 3929.294 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DA)(DG)(DA)(DG)(DG)(DA)(DA)(DG)(DA)(DG)(DA)(DA)' GAGAGGAAGAGAA A ? 2 polyribonucleotide no no UUCUCUUCCUCUC UUCUCUUCCUCUC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DA n 1 3 DG n 1 4 DA n 1 5 DG n 1 6 DG n 1 7 DA n 1 8 DA n 1 9 DG n 1 10 DA n 1 11 DG n 1 12 DA n 1 13 DA n 2 1 U n 2 2 U n 2 3 C n 2 4 U n 2 5 C n 2 6 U n 2 7 U n 2 8 C n 2 9 C n 2 10 U n 2 11 C n 2 12 U n 2 13 C n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DA 2 2 2 DA A A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DA 8 8 8 DA A A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DA 10 10 10 DA A A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DA 12 12 12 DA A A . n A 1 13 DA 13 13 13 DA A A . n B 2 1 U 1 26 26 U U B . n B 2 2 U 2 25 25 U U B . n B 2 3 C 3 24 24 C C B . n B 2 4 U 4 23 23 U U B . n B 2 5 C 5 22 22 C C B . n B 2 6 U 6 21 21 U U B . n B 2 7 U 7 20 20 U U B . n B 2 8 C 8 19 19 C C B . n B 2 9 C 9 18 18 C C B . n B 2 10 U 10 17 17 U U B . n B 2 11 C 11 16 16 C C B . n B 2 12 U 12 15 15 U U B . n B 2 13 C 13 14 14 C C B . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DG 1 ? "O5'" ? A DG 1 "O5'" 2 1 Y 1 B U 26 ? "O5'" ? B U 1 "O5'" 3 2 Y 1 A DG 1 ? "O5'" ? A DG 1 "O5'" 4 2 Y 1 B U 26 ? "O5'" ? B U 1 "O5'" 5 3 Y 1 A DG 1 ? "O5'" ? A DG 1 "O5'" 6 3 Y 1 B U 26 ? "O5'" ? B U 1 "O5'" 7 4 Y 1 A DG 1 ? "O5'" ? A DG 1 "O5'" 8 4 Y 1 B U 26 ? "O5'" ? B U 1 "O5'" 9 5 Y 1 A DG 1 ? "O5'" ? A DG 1 "O5'" 10 5 Y 1 B U 26 ? "O5'" ? B U 1 "O5'" 11 6 Y 1 A DG 1 ? "O5'" ? A DG 1 "O5'" 12 6 Y 1 B U 26 ? "O5'" ? B U 1 "O5'" 13 7 Y 1 A DG 1 ? "O5'" ? A DG 1 "O5'" 14 7 Y 1 B U 26 ? "O5'" ? B U 1 "O5'" 15 8 Y 1 A DG 1 ? "O5'" ? A DG 1 "O5'" 16 8 Y 1 B U 26 ? "O5'" ? B U 1 "O5'" 17 9 Y 1 A DG 1 ? "O5'" ? A DG 1 "O5'" 18 9 Y 1 B U 26 ? "O5'" ? B U 1 "O5'" 19 10 Y 1 A DG 1 ? "O5'" ? A DG 1 "O5'" 20 10 Y 1 B U 26 ? "O5'" ? B U 1 "O5'" # _cell.entry_id 1EFS _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EFS _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1EFS _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1EFS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1EFS _struct.title 'CONFORMATION OF A DNA-RNA HYBRID' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EFS _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' _struct_keywords.text 'RNA-DNA hybrid duplex, DNA-RNA COMPLEX, DNA-RNA HYBRID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 1 PDB 1EFS 1EFS ? ? ? 2 2 PDB 1EFS 1EFS ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1EFS A 1 ? 13 ? 1EFS 1 ? 13 ? 1 13 2 2 1EFS B 1 ? 13 ? 1EFS 26 ? 14 ? 26 14 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B C 13 N3 ? ? A DG 1 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B C 13 O2 ? ? A DG 1 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B C 13 N4 ? ? A DG 1 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B U 12 N3 ? ? A DA 2 B U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B U 12 O4 ? ? A DA 2 B U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B C 11 N3 ? ? A DG 3 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B C 11 O2 ? ? A DG 3 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B C 11 N4 ? ? A DG 3 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B U 10 N3 ? ? A DA 4 B U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B U 10 O4 ? ? A DA 4 B U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B C 9 N3 ? ? A DG 5 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B C 9 O2 ? ? A DG 5 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B C 9 N4 ? ? A DG 5 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B C 8 N3 ? ? A DG 6 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B C 8 O2 ? ? A DG 6 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B C 8 N4 ? ? A DG 6 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B U 7 N3 ? ? A DA 7 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B U 7 O4 ? ? A DA 7 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B U 6 N3 ? ? A DA 8 B U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B U 6 O4 ? ? A DA 8 B U 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B C 5 N3 ? ? A DG 9 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B C 5 O2 ? ? A DG 9 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B C 5 N4 ? ? A DG 9 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B U 4 N3 ? ? A DA 10 B U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B U 4 O4 ? ? A DA 10 B U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B C 3 N3 ? ? A DG 11 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B C 3 O2 ? ? A DG 11 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B C 3 N4 ? ? A DG 11 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B U 2 N3 ? ? A DA 12 B U 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B U 2 O4 ? ? A DA 12 B U 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B U 1 N3 ? ? A DA 13 B U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B U 1 O4 ? ? A DA 13 B U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.32 108.30 3.02 0.30 N 2 1 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.94 108.30 3.64 0.30 N 3 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.90 108.30 3.60 0.30 N 4 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 111.82 108.30 3.52 0.30 N 5 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.96 108.30 3.66 0.30 N 6 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.41 108.30 3.11 0.30 N 7 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.34 108.30 3.04 0.30 N 8 1 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 111.76 108.30 3.46 0.30 N 9 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.71 108.30 3.41 0.30 N 10 1 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 111.39 108.30 3.09 0.30 N 11 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.19 108.30 2.89 0.30 N 12 1 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 111.97 108.30 3.67 0.30 N 13 1 "O4'" A DA 13 ? ? "C1'" A DA 13 ? ? N9 A DA 13 ? ? 110.79 108.30 2.49 0.30 N 14 2 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.23 108.30 2.93 0.30 N 15 2 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.48 108.30 3.18 0.30 N 16 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.95 108.30 3.65 0.30 N 17 2 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 111.74 108.30 3.44 0.30 N 18 2 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.97 108.30 3.67 0.30 N 19 2 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.82 108.30 2.52 0.30 N 20 2 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.13 108.30 2.83 0.30 N 21 2 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 111.03 108.30 2.73 0.30 N 22 2 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.28 108.30 2.98 0.30 N 23 2 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? "C2'" A DA 10 ? ? 101.03 105.90 -4.87 0.80 N 24 2 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 112.52 108.30 4.22 0.30 N 25 2 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.71 108.30 3.41 0.30 N 26 2 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 112.32 108.30 4.02 0.30 N 27 2 "O4'" A DA 13 ? ? "C1'" A DA 13 ? ? N9 A DA 13 ? ? 110.77 108.30 2.47 0.30 N 28 3 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.33 108.30 3.03 0.30 N 29 3 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.90 108.30 3.60 0.30 N 30 3 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.77 108.30 3.47 0.30 N 31 3 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 111.86 108.30 3.56 0.30 N 32 3 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.83 108.30 3.53 0.30 N 33 3 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.38 108.30 3.08 0.30 N 34 3 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.48 108.30 3.18 0.30 N 35 3 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 111.81 108.30 3.51 0.30 N 36 3 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.58 108.30 3.28 0.30 N 37 3 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 111.68 108.30 3.38 0.30 N 38 3 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.97 108.30 2.67 0.30 N 39 3 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 112.05 108.30 3.75 0.30 N 40 3 "O4'" A DA 13 ? ? "C1'" A DA 13 ? ? N9 A DA 13 ? ? 110.81 108.30 2.51 0.30 N 41 4 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.13 108.30 2.83 0.30 N 42 4 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.92 108.30 3.62 0.30 N 43 4 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.26 108.30 2.96 0.30 N 44 4 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 111.99 108.30 3.69 0.30 N 45 4 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.99 108.30 3.69 0.30 N 46 4 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.03 108.30 2.73 0.30 N 47 4 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.41 108.30 3.11 0.30 N 48 4 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 111.77 108.30 3.47 0.30 N 49 4 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.32 108.30 3.02 0.30 N 50 4 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 111.75 108.30 3.45 0.30 N 51 4 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.96 108.30 2.66 0.30 N 52 4 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 112.18 108.30 3.88 0.30 N 53 4 "O4'" A DA 13 ? ? "C1'" A DA 13 ? ? N9 A DA 13 ? ? 110.73 108.30 2.43 0.30 N 54 5 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.17 108.30 2.87 0.30 N 55 5 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.95 108.30 3.65 0.30 N 56 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.20 108.30 2.90 0.30 N 57 5 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 111.92 108.30 3.62 0.30 N 58 5 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 112.02 108.30 3.72 0.30 N 59 5 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.95 108.30 2.65 0.30 N 60 5 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.64 108.30 3.34 0.30 N 61 5 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 111.78 108.30 3.48 0.30 N 62 5 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.62 108.30 3.32 0.30 N 63 5 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 111.84 108.30 3.54 0.30 N 64 5 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.77 108.30 3.47 0.30 N 65 5 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 112.33 108.30 4.03 0.30 N 66 5 "O4'" A DA 13 ? ? "C1'" A DA 13 ? ? N9 A DA 13 ? ? 110.69 108.30 2.39 0.30 N 67 6 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 110.98 108.30 2.68 0.30 N 68 6 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.88 108.30 3.58 0.30 N 69 6 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.91 108.30 3.61 0.30 N 70 6 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 111.80 108.30 3.50 0.30 N 71 6 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.87 108.30 3.57 0.30 N 72 6 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.34 108.30 3.04 0.30 N 73 6 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.60 108.30 3.30 0.30 N 74 6 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 111.68 108.30 3.38 0.30 N 75 6 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.67 108.30 3.37 0.30 N 76 6 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 111.82 108.30 3.52 0.30 N 77 6 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.39 108.30 3.09 0.30 N 78 6 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 112.03 108.30 3.73 0.30 N 79 6 "O4'" A DA 13 ? ? "C1'" A DA 13 ? ? N9 A DA 13 ? ? 110.78 108.30 2.48 0.30 N 80 7 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.10 108.30 2.80 0.30 N 81 7 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.96 108.30 3.66 0.30 N 82 7 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.62 108.30 3.32 0.30 N 83 7 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 112.05 108.30 3.75 0.30 N 84 7 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.96 108.30 3.66 0.30 N 85 7 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.95 108.30 2.65 0.30 N 86 7 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.18 108.30 2.88 0.30 N 87 7 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.87 108.30 2.57 0.30 N 88 7 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.62 108.30 3.32 0.30 N 89 7 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 111.50 108.30 3.20 0.30 N 90 7 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.00 108.30 2.70 0.30 N 91 7 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 111.99 108.30 3.69 0.30 N 92 7 "O4'" A DA 13 ? ? "C1'" A DA 13 ? ? N9 A DA 13 ? ? 110.76 108.30 2.46 0.30 N 93 8 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.20 108.30 2.90 0.30 N 94 8 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.88 108.30 3.58 0.30 N 95 8 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.72 108.30 3.42 0.30 N 96 8 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 111.84 108.30 3.54 0.30 N 97 8 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.94 108.30 3.64 0.30 N 98 8 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.29 108.30 2.99 0.30 N 99 8 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.63 108.30 3.33 0.30 N 100 8 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 111.85 108.30 3.55 0.30 N 101 8 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.59 108.30 3.29 0.30 N 102 8 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 111.70 108.30 3.40 0.30 N 103 8 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.47 108.30 3.17 0.30 N 104 8 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 111.79 108.30 3.49 0.30 N 105 8 "O4'" A DA 13 ? ? "C1'" A DA 13 ? ? N9 A DA 13 ? ? 111.27 108.30 2.97 0.30 N 106 9 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.19 108.30 2.89 0.30 N 107 9 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.93 108.30 3.63 0.30 N 108 9 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.67 108.30 3.37 0.30 N 109 9 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 111.62 108.30 3.32 0.30 N 110 9 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.85 108.30 3.55 0.30 N 111 9 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.97 108.30 2.67 0.30 N 112 9 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.20 108.30 2.90 0.30 N 113 9 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 111.19 108.30 2.89 0.30 N 114 9 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.59 108.30 2.29 0.30 N 115 9 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 111.75 108.30 3.45 0.30 N 116 9 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.84 108.30 2.54 0.30 N 117 9 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 112.02 108.30 3.72 0.30 N 118 9 "O4'" A DA 13 ? ? "C1'" A DA 13 ? ? N9 A DA 13 ? ? 110.70 108.30 2.40 0.30 N 119 10 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.11 108.30 2.81 0.30 N 120 10 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.51 108.30 3.21 0.30 N 121 10 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.04 108.30 3.74 0.30 N 122 10 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.96 108.30 2.66 0.30 N 123 10 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.55 108.30 3.25 0.30 N 124 10 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 111.03 108.30 2.73 0.30 N 125 10 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.41 108.30 3.11 0.30 N 126 10 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 111.49 108.30 3.19 0.30 N 127 10 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.60 108.30 2.30 0.30 N 128 10 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 111.36 108.30 3.06 0.30 N 129 10 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.39 108.30 3.09 0.30 N 130 10 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 112.11 108.30 3.81 0.30 N 131 10 "O4'" A DA 13 ? ? "C1'" A DA 13 ? ? N9 A DA 13 ? ? 110.92 108.30 2.62 0.30 N # _pdbx_nmr_ensemble.entry_id 1EFS _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria ;back calculated data agree with experimental NOESY spectrum, structures with the least restraint violations, structures with the lowest energy ; _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1EFS _pdbx_nmr_representative.conformer_id 3 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1.2mM each strand; 150mM NaCl, 0.1 mM EDTA, pH 7, 90% H2O,10% D2O' '90% H2O/10% D2O' 2 '1.2mM each strand; 150mM NaCl, 0.1 mM EDTA, pH 7, 100% D2O' '100% D2O' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 278 ambient 7.0 '80 mM NaCl' ? K 2 291 ambient 7.0 '80 mM NaCl' ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 2 2 '2D NOESY' 3 3 2 DQF-COSY 4 4 2 'Reverse 1H-31P COSY' 5 5 2 '1H-13C HSQC' # _pdbx_nmr_refine.entry_id 1EFS _pdbx_nmr_refine.method 'molecular mechanics distance geometry matrix relaxation' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal VNMR 6.1b collection ? 1 Felix 95 'data analysis' ? 2 JUMNA 10 'structure solution' 'LAVERY, R.' 3 IRMA 95 refinement ? 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C OP3 O N N 1 C P P N N 2 C OP1 O N N 3 C OP2 O N N 4 C "O5'" O N N 5 C "C5'" C N N 6 C "C4'" C N R 7 C "O4'" O N N 8 C "C3'" C N S 9 C "O3'" O N N 10 C "C2'" C N R 11 C "O2'" O N N 12 C "C1'" C N R 13 C N1 N N N 14 C C2 C N N 15 C O2 O N N 16 C N3 N N N 17 C C4 C N N 18 C N4 N N N 19 C C5 C N N 20 C C6 C N N 21 C HOP3 H N N 22 C HOP2 H N N 23 C "H5'" H N N 24 C "H5''" H N N 25 C "H4'" H N N 26 C "H3'" H N N 27 C "HO3'" H N N 28 C "H2'" H N N 29 C "HO2'" H N N 30 C "H1'" H N N 31 C H41 H N N 32 C H42 H N N 33 C H5 H N N 34 C H6 H N N 35 DA OP3 O N N 36 DA P P N N 37 DA OP1 O N N 38 DA OP2 O N N 39 DA "O5'" O N N 40 DA "C5'" C N N 41 DA "C4'" C N R 42 DA "O4'" O N N 43 DA "C3'" C N S 44 DA "O3'" O N N 45 DA "C2'" C N N 46 DA "C1'" C N R 47 DA N9 N Y N 48 DA C8 C Y N 49 DA N7 N Y N 50 DA C5 C Y N 51 DA C6 C Y N 52 DA N6 N N N 53 DA N1 N Y N 54 DA C2 C Y N 55 DA N3 N Y N 56 DA C4 C Y N 57 DA HOP3 H N N 58 DA HOP2 H N N 59 DA "H5'" H N N 60 DA "H5''" H N N 61 DA "H4'" H N N 62 DA "H3'" H N N 63 DA "HO3'" H N N 64 DA "H2'" H N N 65 DA "H2''" H N N 66 DA "H1'" H N N 67 DA H8 H N N 68 DA H61 H N N 69 DA H62 H N N 70 DA H2 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 U OP3 O N N 109 U P P N N 110 U OP1 O N N 111 U OP2 O N N 112 U "O5'" O N N 113 U "C5'" C N N 114 U "C4'" C N R 115 U "O4'" O N N 116 U "C3'" C N S 117 U "O3'" O N N 118 U "C2'" C N R 119 U "O2'" O N N 120 U "C1'" C N R 121 U N1 N N N 122 U C2 C N N 123 U O2 O N N 124 U N3 N N N 125 U C4 C N N 126 U O4 O N N 127 U C5 C N N 128 U C6 C N N 129 U HOP3 H N N 130 U HOP2 H N N 131 U "H5'" H N N 132 U "H5''" H N N 133 U "H4'" H N N 134 U "H3'" H N N 135 U "HO3'" H N N 136 U "H2'" H N N 137 U "HO2'" H N N 138 U "H1'" H N N 139 U H3 H N N 140 U H5 H N N 141 U H6 H N N 142 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 DA OP3 P sing N N 37 DA OP3 HOP3 sing N N 38 DA P OP1 doub N N 39 DA P OP2 sing N N 40 DA P "O5'" sing N N 41 DA OP2 HOP2 sing N N 42 DA "O5'" "C5'" sing N N 43 DA "C5'" "C4'" sing N N 44 DA "C5'" "H5'" sing N N 45 DA "C5'" "H5''" sing N N 46 DA "C4'" "O4'" sing N N 47 DA "C4'" "C3'" sing N N 48 DA "C4'" "H4'" sing N N 49 DA "O4'" "C1'" sing N N 50 DA "C3'" "O3'" sing N N 51 DA "C3'" "C2'" sing N N 52 DA "C3'" "H3'" sing N N 53 DA "O3'" "HO3'" sing N N 54 DA "C2'" "C1'" sing N N 55 DA "C2'" "H2'" sing N N 56 DA "C2'" "H2''" sing N N 57 DA "C1'" N9 sing N N 58 DA "C1'" "H1'" sing N N 59 DA N9 C8 sing Y N 60 DA N9 C4 sing Y N 61 DA C8 N7 doub Y N 62 DA C8 H8 sing N N 63 DA N7 C5 sing Y N 64 DA C5 C6 sing Y N 65 DA C5 C4 doub Y N 66 DA C6 N6 sing N N 67 DA C6 N1 doub Y N 68 DA N6 H61 sing N N 69 DA N6 H62 sing N N 70 DA N1 C2 sing Y N 71 DA C2 N3 doub Y N 72 DA C2 H2 sing N N 73 DA N3 C4 sing Y N 74 DG OP3 P sing N N 75 DG OP3 HOP3 sing N N 76 DG P OP1 doub N N 77 DG P OP2 sing N N 78 DG P "O5'" sing N N 79 DG OP2 HOP2 sing N N 80 DG "O5'" "C5'" sing N N 81 DG "C5'" "C4'" sing N N 82 DG "C5'" "H5'" sing N N 83 DG "C5'" "H5''" sing N N 84 DG "C4'" "O4'" sing N N 85 DG "C4'" "C3'" sing N N 86 DG "C4'" "H4'" sing N N 87 DG "O4'" "C1'" sing N N 88 DG "C3'" "O3'" sing N N 89 DG "C3'" "C2'" sing N N 90 DG "C3'" "H3'" sing N N 91 DG "O3'" "HO3'" sing N N 92 DG "C2'" "C1'" sing N N 93 DG "C2'" "H2'" sing N N 94 DG "C2'" "H2''" sing N N 95 DG "C1'" N9 sing N N 96 DG "C1'" "H1'" sing N N 97 DG N9 C8 sing Y N 98 DG N9 C4 sing Y N 99 DG C8 N7 doub Y N 100 DG C8 H8 sing N N 101 DG N7 C5 sing Y N 102 DG C5 C6 sing N N 103 DG C5 C4 doub Y N 104 DG C6 O6 doub N N 105 DG C6 N1 sing N N 106 DG N1 C2 sing N N 107 DG N1 H1 sing N N 108 DG C2 N2 sing N N 109 DG C2 N3 doub N N 110 DG N2 H21 sing N N 111 DG N2 H22 sing N N 112 DG N3 C4 sing N N 113 U OP3 P sing N N 114 U OP3 HOP3 sing N N 115 U P OP1 doub N N 116 U P OP2 sing N N 117 U P "O5'" sing N N 118 U OP2 HOP2 sing N N 119 U "O5'" "C5'" sing N N 120 U "C5'" "C4'" sing N N 121 U "C5'" "H5'" sing N N 122 U "C5'" "H5''" sing N N 123 U "C4'" "O4'" sing N N 124 U "C4'" "C3'" sing N N 125 U "C4'" "H4'" sing N N 126 U "O4'" "C1'" sing N N 127 U "C3'" "O3'" sing N N 128 U "C3'" "C2'" sing N N 129 U "C3'" "H3'" sing N N 130 U "O3'" "HO3'" sing N N 131 U "C2'" "O2'" sing N N 132 U "C2'" "C1'" sing N N 133 U "C2'" "H2'" sing N N 134 U "O2'" "HO2'" sing N N 135 U "C1'" N1 sing N N 136 U "C1'" "H1'" sing N N 137 U N1 C2 sing N N 138 U N1 C6 sing N N 139 U C2 O2 doub N N 140 U C2 N3 sing N N 141 U N3 C4 sing N N 142 U N3 H3 sing N N 143 U C4 O4 doub N N 144 U C4 C5 sing N N 145 U C5 C6 doub N N 146 U C5 H5 sing N N 147 U C6 H6 sing N N 148 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1EFS 'double helix' 1EFS 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B C 13 1_555 -0.275 -0.086 -0.083 -0.467 12.584 -1.161 1 A_DG1:C14_B A 1 ? B 14 ? 19 1 1 A DA 2 1_555 B U 12 1_555 0.031 0.000 -0.093 -1.309 -7.220 -1.841 2 A_DA2:U15_B A 2 ? B 15 ? 20 1 1 A DG 3 1_555 B C 11 1_555 -0.191 -0.041 0.203 4.743 -2.224 -0.946 3 A_DG3:C16_B A 3 ? B 16 ? 19 1 1 A DA 4 1_555 B U 10 1_555 0.043 -0.010 -0.093 5.029 -8.387 -0.815 4 A_DA4:U17_B A 4 ? B 17 ? 20 1 1 A DG 5 1_555 B C 9 1_555 -0.212 -0.044 0.053 4.414 -1.727 -1.770 5 A_DG5:C18_B A 5 ? B 18 ? 19 1 1 A DG 6 1_555 B C 8 1_555 -0.274 -0.053 0.096 7.127 0.818 -1.317 6 A_DG6:C19_B A 6 ? B 19 ? 19 1 1 A DA 7 1_555 B U 7 1_555 0.129 -0.014 -0.131 -2.637 -11.168 -0.368 7 A_DA7:U20_B A 7 ? B 20 ? 20 1 1 A DA 8 1_555 B U 6 1_555 0.062 0.055 -0.048 15.916 -8.718 -2.700 8 A_DA8:U21_B A 8 ? B 21 ? 20 1 1 A DG 9 1_555 B C 5 1_555 -0.304 -0.075 0.212 6.563 -4.284 -1.513 9 A_DG9:C22_B A 9 ? B 22 ? 19 1 1 A DA 10 1_555 B U 4 1_555 0.015 -0.005 -0.084 5.212 -8.598 -1.939 10 A_DA10:U23_B A 10 ? B 23 ? 20 1 1 A DG 11 1_555 B C 3 1_555 -0.212 -0.056 0.173 2.168 -6.689 -1.634 11 A_DG11:C24_B A 11 ? B 24 ? 19 1 1 A DA 12 1_555 B U 2 1_555 0.073 0.032 0.074 22.264 -15.319 -2.131 12 A_DA12:U25_B A 12 ? B 25 ? 20 1 1 A DA 13 1_555 B U 1 1_555 0.155 0.021 0.082 16.222 -19.108 -2.351 13 A_DA13:U26_B A 13 ? B 26 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B C 13 1_555 A DA 2 1_555 B U 12 1_555 -0.289 -1.926 3.371 -0.123 6.008 34.114 -4.144 0.466 3.000 10.143 0.207 34.624 1 AA_DG1DA2:U15C14_BB A 1 ? B 14 ? A 2 ? B 15 ? 1 A DA 2 1_555 B U 12 1_555 A DG 3 1_555 B C 11 1_555 -0.108 -1.680 3.121 -4.906 1.352 29.173 -3.558 -0.770 3.019 2.659 9.647 29.604 2 AA_DA2DG3:C16U15_BB A 2 ? B 15 ? A 3 ? B 16 ? 1 A DG 3 1_555 B C 11 1_555 A DA 4 1_555 B U 10 1_555 -0.294 -1.682 3.209 -0.874 5.978 32.533 -3.900 0.378 2.870 10.556 1.544 33.075 3 AA_DG3DA4:U17C16_BB A 3 ? B 16 ? A 4 ? B 17 ? 1 A DA 4 1_555 B U 10 1_555 A DG 5 1_555 B C 9 1_555 -0.280 -1.599 3.345 -4.838 5.891 29.634 -4.180 -0.412 2.987 11.284 9.267 30.577 4 AA_DA4DG5:C18U17_BB A 4 ? B 17 ? A 5 ? B 18 ? 1 A DG 5 1_555 B C 9 1_555 A DG 6 1_555 B C 8 1_555 -0.345 -1.844 3.306 -4.094 0.497 31.015 -3.515 -0.145 3.294 0.924 7.613 31.282 5 AA_DG5DG6:C19C18_BB A 5 ? B 18 ? A 6 ? B 19 ? 1 A DG 6 1_555 B C 8 1_555 A DA 7 1_555 B U 7 1_555 -0.258 -1.717 3.565 -1.613 5.703 31.378 -4.205 0.163 3.220 10.428 2.949 31.919 6 AA_DG6DA7:U20C19_BB A 6 ? B 19 ? A 7 ? B 20 ? 1 A DA 7 1_555 B U 7 1_555 A DA 8 1_555 B U 6 1_555 -0.311 -0.856 3.120 -1.810 -5.036 31.072 -0.658 0.244 3.227 -9.314 3.347 31.519 7 AA_DA7DA8:U21U20_BB A 7 ? B 20 ? A 8 ? B 21 ? 1 A DA 8 1_555 B U 6 1_555 A DG 9 1_555 B C 5 1_555 -0.279 -2.004 3.452 -6.734 9.746 29.649 -5.375 -0.684 2.675 18.159 12.546 31.878 8 AA_DA8DG9:C22U21_BB A 8 ? B 21 ? A 9 ? B 22 ? 1 A DG 9 1_555 B C 5 1_555 A DA 10 1_555 B U 4 1_555 -0.511 -1.608 3.281 -1.614 4.056 33.872 -3.366 0.620 3.094 6.925 2.757 34.144 9 AA_DG9DA10:U23C22_BB A 9 ? B 22 ? A 10 ? B 23 ? 1 A DA 10 1_555 B U 4 1_555 A DG 11 1_555 B C 3 1_555 -0.617 -1.427 3.309 -6.394 5.099 31.671 -3.416 -0.007 3.110 9.153 11.478 32.683 10 AA_DA10DG11:C24U23_BB A 10 ? B 23 ? A 11 ? B 24 ? 1 A DG 11 1_555 B C 3 1_555 A DA 12 1_555 B U 2 1_555 -0.093 -1.145 2.873 1.346 2.070 29.977 -2.574 0.419 2.783 3.993 -2.596 30.076 11 AA_DG11DA12:U25C24_BB A 11 ? B 24 ? A 12 ? B 25 ? 1 A DA 12 1_555 B U 2 1_555 A DA 13 1_555 B U 1 1_555 -0.820 -0.636 3.291 -6.782 5.866 40.115 -1.553 0.421 3.261 8.424 9.741 41.065 12 AA_DA12DA13:U26U25_BB A 12 ? B 25 ? A 13 ? B 26 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.field_strength 500 # _atom_sites.entry_id 1EFS _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_