HEADER TRANSPORT PROTEIN 25-FEB-00 1EII TITLE NMR STRUCTURE OF HOLO CELLULAR RETINOL-BINDING PROTEIN II COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR RETINOL-BINDING PROTEIN II; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CRBP-II; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 CELL: SMALL INTESTINAL ENTEROCYTE; SOURCE 6 CELLULAR_LOCATION: CYTOPLASM; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: JM101; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PMON-CRBP II KEYWDS PROTEIN-LIGAND COMPLEX, BETA BARREL, HELIX-TURN-HELIX, TRANSPORT KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR J.LU,C.L.LIN,C.TANG,J.W.PONDER,J.L.KAO,D.P.CISTOLA,E.LI REVDAT 4 22-MAY-24 1EII 1 REMARK REVDAT 3 16-FEB-22 1EII 1 REMARK REVDAT 2 24-FEB-09 1EII 1 VERSN REVDAT 1 09-AUG-00 1EII 0 JRNL AUTH J.LU,C.L.LIN,C.TANG,J.W.PONDER,J.L.KAO,D.P.CISTOLA,E.LI JRNL TITL BINDING OF RETINOL INDUCES CHANGES IN RAT CELLULAR JRNL TITL 2 RETINOL-BINDING PROTEIN II CONFORMATION AND BACKBONE JRNL TITL 3 DYNAMICS. JRNL REF J.MOL.BIOL. V. 300 619 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10884357 JRNL DOI 10.1006/JMBI.2000.3883 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.LU,C.L.LIN,C.TANG,J.W.PONDER,J.L.KAO,D.P.CISTOLA,E.LI REMARK 1 TITL THE STRUCTURE AND DYNAMICS OF RAT APO-CELLULAR REMARK 1 TITL 2 RETINOL-BINDING PROTEIN II IN SOLUTION: COMPARISON WITH THE REMARK 1 TITL 3 X-RAY STRUCTURE REMARK 1 REF J.MOL.BIOL. V. 286 1179 1999 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1999.2544 REMARK 1 REFERENCE 2 REMARK 1 AUTH N.S.WINTER,J.M.BRATT,L.J.BANASZAK REMARK 1 TITL CRYSTAL STRUCTURES OF HOLO AND APO-CELLULAR RETINOL-BINDING REMARK 1 TITL 2 PROTEIN II REMARK 1 REF J.MOL.BIOL. V. 230 1247 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1993.1239 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.BANASZAK,N.WINTER,Z.XU,D.A.BERNLOHR,S.COWAN,T.A.JONES REMARK 1 TITL LIPID-BINDING PROTEINS: A FAMILY OF FATTY ACID AND RETINOID REMARK 1 TITL 2 TRANSPORT PROTEINS REMARK 1 REF ADV.PROTEIN CHEM. V. 45 89 1994 REMARK 1 REFN ISSN 0065-3233 REMARK 1 REFERENCE 4 REMARK 1 AUTH M.E.HODSDON,J.W.PONDER,D.P.CISTOLA REMARK 1 TITL THE NMR SOLUTION STRUCTURE OF INTESTINAL FATTY ACID-BINDING REMARK 1 TITL 2 PROTEIN COMPLEXED WITH PALMITATE: APPLICATION OF A NOVEL REMARK 1 TITL 3 DISTANCE GEOMETRY ALGORITHM REMARK 1 REF J.MOL.BIOL. V. 264 585 1996 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1996.0663 REMARK 1 REFERENCE 5 REMARK 1 AUTH M.E.HODSDON,D.P.CISTOLA REMARK 1 TITL LIGAND BINDING ALTERS THE BACKBONE MOBILITY OF INTESTINAL REMARK 1 TITL 2 FATTY ACID-BINDING PROTEIN AS MONITORED BY 15N NMR REMARK 1 TITL 3 RELAXATION AND 1H EXCHANGE REMARK 1 REF BIOCHEMISTRY V. 36 2278 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI962018L REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TINKER 3.3, TINKER 3.3 REMARK 3 AUTHORS : PONDER (TINKER), PONDER (TINKER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE CALCULATIONS WERE CARRIED REMARK 3 OUT USING TINKER, A SOFTWARE PACKAGE FOR MOLECULAR MECHANICS AND REMARK 3 DYNAMICS. THE PROTOCOL EMPLOYS METRIC MATRIX DISTANCE GEOMETRY REMARK 3 WITH PAIRWISE GAUSSIAN METRIZATION FOLLOWED BY SIMULATED REMARK 3 ANNEALING. THE UNIQUE DISTANCE GEOMETRY ALGORITHM IMPLEMENTED IN REMARK 3 TINKER OVERCOMES THE SAMPLING AND SCALING PROBLEMS OF EARLIER REMARK 3 DISTANCE GEOMETRY METHODS AND IS COMPUTATIONALLY MORE EFFICIENT. REMARK 4 REMARK 4 1EII COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-00. REMARK 100 THE DEPOSITION ID IS D_1000010608. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 7.4; 6.5 REMARK 210 IONIC STRENGTH : 0.081; 0.079 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM CELLULAR RETINOL-BINDING REMARK 210 PROTEIN II U-15N,13C, COMPLEXED WITH ALL-TRANS RETINOL IN 1-TO-1 REMARK 210 MOLAR RATIO; 20 MM PHOSPHATE BUFFER; 1.5 MM CELLULAR RETINOL- REMARK 210 BINDING PROTEIN II U-15N,13C, COMPLEXED WITH ALL-TRANS RETINOL REMARK 210 IN 1-TO-1 MOLAR RATIO; 20 MM PHOSPHATE BUFFER; 1.5 MM CELLULAR REMARK 210 RETINOL-BINDING PROTEIN II U-15N, COMPLEXED WITH ALL-TRANS REMARK 210 RETINOL IN 1-TO-1 MOLAR RATIO; 20 MM PHOSPHATE BUFFER; 0.2 MM REMARK 210 CELLULAR RETINOL-BINDING PROTEIN II NATURAL ABUNDANCE, COMPLEXED REMARK 210 WITH (2,3,6,7,8,9,10,11,19-13C)-ALL-TRANS RETINOL IN 1-TO-1 REMARK 210 MOLAR RATIO; 20 MM PHOSPHATE BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITY; UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY & SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : FINAL PENALTY FUNCTION VALUES REMARK 210 WITHIN 2 STANDARD DEVIATIONS REMARK 210 FROM THE MEAN REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 TRP A 9 CE2 TRP A 9 CD2 -0.072 REMARK 500 1 TRP A 89 CG TRP A 89 CD2 -0.107 REMARK 500 1 TRP A 110 CE2 TRP A 110 CD2 -0.080 REMARK 500 2 TRP A 89 CG TRP A 89 CD2 -0.108 REMARK 500 2 TRP A 89 CE2 TRP A 89 CD2 -0.072 REMARK 500 2 TRP A 110 CG TRP A 110 CD2 -0.103 REMARK 500 2 TRP A 110 CE2 TRP A 110 CD2 -0.078 REMARK 500 3 TRP A 9 CE2 TRP A 9 CD2 -0.075 REMARK 500 3 TRP A 89 CG TRP A 89 CD2 -0.109 REMARK 500 3 TRP A 110 CG TRP A 110 CD2 -0.105 REMARK 500 4 TRP A 9 CE2 TRP A 9 CD2 -0.073 REMARK 500 4 TRP A 107 CE2 TRP A 107 CD2 -0.074 REMARK 500 4 TRP A 110 CG TRP A 110 CD2 -0.109 REMARK 500 4 TRP A 110 CE2 TRP A 110 CD2 -0.081 REMARK 500 5 TRP A 9 CE2 TRP A 9 CD2 -0.080 REMARK 500 5 TRP A 89 CG TRP A 89 CD2 -0.107 REMARK 500 6 TRP A 107 CE2 TRP A 107 CD2 -0.075 REMARK 500 7 TRP A 89 CG TRP A 89 CD2 -0.106 REMARK 500 7 TRP A 110 CG TRP A 110 CD2 -0.112 REMARK 500 8 TRP A 9 CE2 TRP A 9 CD2 -0.080 REMARK 500 8 TRP A 89 CG TRP A 89 CD2 -0.112 REMARK 500 8 TRP A 89 CE2 TRP A 89 CD2 -0.075 REMARK 500 8 TRP A 110 CE2 TRP A 110 CD2 -0.073 REMARK 500 9 TRP A 89 CE2 TRP A 89 CD2 -0.073 REMARK 500 9 TRP A 110 CE2 TRP A 110 CD2 -0.078 REMARK 500 10 TRP A 89 CG TRP A 89 CD2 -0.103 REMARK 500 10 TRP A 107 CG TRP A 107 CD2 -0.104 REMARK 500 10 TRP A 107 CE2 TRP A 107 CD2 -0.078 REMARK 500 11 TRP A 9 CE2 TRP A 9 CD2 -0.073 REMARK 500 11 TRP A 89 CG TRP A 89 CD2 -0.108 REMARK 500 11 TRP A 89 CE2 TRP A 89 CD2 -0.073 REMARK 500 11 TRP A 110 CE2 TRP A 110 CD2 -0.078 REMARK 500 12 TRP A 107 CE2 TRP A 107 CD2 -0.075 REMARK 500 12 TRP A 110 CG TRP A 110 CD2 -0.104 REMARK 500 13 TRP A 110 CG TRP A 110 CD2 -0.103 REMARK 500 13 TRP A 110 CE2 TRP A 110 CD2 -0.075 REMARK 500 14 TRP A 110 CG TRP A 110 CD2 -0.103 REMARK 500 15 TRP A 9 CE2 TRP A 9 CD2 -0.081 REMARK 500 15 TRP A 107 CG TRP A 107 CD2 -0.104 REMARK 500 16 TRP A 9 CE2 TRP A 9 CD2 -0.077 REMARK 500 16 TRP A 89 CG TRP A 89 CD2 -0.108 REMARK 500 16 TRP A 89 CE2 TRP A 89 CD2 -0.076 REMARK 500 16 TRP A 107 CE2 TRP A 107 CD2 -0.079 REMARK 500 16 TRP A 110 CG TRP A 110 CD2 -0.103 REMARK 500 17 TRP A 89 CG TRP A 89 CD2 -0.109 REMARK 500 17 TRP A 107 CE2 TRP A 107 CD2 -0.073 REMARK 500 17 TRP A 110 CE2 TRP A 110 CD2 -0.076 REMARK 500 18 TRP A 9 CE2 TRP A 9 CD2 -0.080 REMARK 500 19 TRP A 9 CE2 TRP A 9 CD2 -0.078 REMARK 500 19 TRP A 110 CE2 TRP A 110 CD2 -0.080 REMARK 500 REMARK 500 THIS ENTRY HAS 65 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ASP A 4 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 1 GLY A 7 O - C - N ANGL. DEV. = 12.9 DEGREES REMARK 500 1 LEU A 37 O - C - N ANGL. DEV. = 10.4 DEGREES REMARK 500 1 PHE A 50 CB - CG - CD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 1 PHE A 58 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 1 ARG A 59 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 1 PHE A 65 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 VAL A 69 O - C - N ANGL. DEV. = 11.5 DEGREES REMARK 500 1 TRP A 89 CD1 - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 1 TRP A 89 CG - CD1 - NE1 ANGL. DEV. = -8.1 DEGREES REMARK 500 1 TRP A 89 CD1 - NE1 - CE2 ANGL. DEV. = 5.9 DEGREES REMARK 500 1 TRP A 89 NE1 - CE2 - CZ2 ANGL. DEV. = 8.1 DEGREES REMARK 500 1 GLY A 91 O - C - N ANGL. DEV. = 10.6 DEGREES REMARK 500 1 ARG A 105 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 1 TRP A 107 CD1 - NE1 - CE2 ANGL. DEV. = -9.2 DEGREES REMARK 500 1 TRP A 110 CD1 - CG - CD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 1 TRP A 110 CG - CD1 - NE1 ANGL. DEV. = -7.1 DEGREES REMARK 500 1 TRP A 110 CD2 - CE2 - CZ2 ANGL. DEV. = -7.3 DEGREES REMARK 500 1 ASP A 114 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 1 PHE A 131 CB - CG - CD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 1 LYS A 132 O - C - N ANGL. DEV. = 11.2 DEGREES REMARK 500 2 TRP A 9 CD1 - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 2 TRP A 9 CE2 - CD2 - CG ANGL. DEV. = 5.5 DEGREES REMARK 500 2 TYR A 20 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 2 ASP A 27 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 2 PHE A 58 CB - CG - CD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 2 TYR A 61 CB - CG - CD1 ANGL. DEV. = -3.6 DEGREES REMARK 500 2 TYR A 61 CG - CD1 - CE1 ANGL. DEV. = 5.0 DEGREES REMARK 500 2 THR A 75 CA - CB - CG2 ANGL. DEV. = -8.5 DEGREES REMARK 500 2 TRP A 89 CD1 - CG - CD2 ANGL. DEV. = 8.5 DEGREES REMARK 500 2 TRP A 89 CG - CD1 - NE1 ANGL. DEV. = -8.3 DEGREES REMARK 500 2 ARG A 105 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 2 TRP A 107 CD1 - NE1 - CE2 ANGL. DEV. = -7.4 DEGREES REMARK 500 2 TRP A 110 CD1 - CG - CD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 2 TRP A 110 CG - CD1 - NE1 ANGL. DEV. = -7.4 DEGREES REMARK 500 2 TRP A 110 CE2 - CD2 - CE3 ANGL. DEV. = 7.6 DEGREES REMARK 500 2 TRP A 110 CE2 - CD2 - CG ANGL. DEV. = -6.4 DEGREES REMARK 500 3 GLY A 7 O - C - N ANGL. DEV. = 9.7 DEGREES REMARK 500 3 PHE A 17 CB - CG - CD1 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 TYR A 20 CB - CG - CD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 3 ARG A 36 NE - CZ - NH1 ANGL. DEV. = 7.2 DEGREES REMARK 500 3 ARG A 36 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 3 PHE A 50 CB - CG - CD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 3 PHE A 58 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 3 TYR A 61 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES REMARK 500 3 ASP A 64 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 3 PHE A 65 CB - CG - CD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 3 PHE A 65 CG - CD1 - CE1 ANGL. DEV. = -6.7 DEGREES REMARK 500 3 TRP A 89 CD1 - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 3 TRP A 89 CG - CD1 - NE1 ANGL. DEV. = -9.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 526 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 2 44.62 -90.18 REMARK 500 1 LYS A 3 -42.94 -141.23 REMARK 500 1 ASP A 4 72.47 46.91 REMARK 500 1 ASN A 6 85.08 -31.53 REMARK 500 1 TRP A 9 79.95 -167.70 REMARK 500 1 GLU A 10 96.49 -53.85 REMARK 500 1 GLU A 12 -61.08 -92.95 REMARK 500 1 SER A 13 167.65 162.13 REMARK 500 1 GLU A 15 -64.67 -92.57 REMARK 500 1 LEU A 24 87.47 -172.64 REMARK 500 1 ASP A 25 86.54 -56.85 REMARK 500 1 ASP A 27 172.96 179.31 REMARK 500 1 ILE A 42 104.81 -170.66 REMARK 500 1 VAL A 44 99.77 -170.71 REMARK 500 1 ASN A 49 101.99 -161.42 REMARK 500 1 ASP A 64 79.40 32.09 REMARK 500 1 THR A 66 -169.88 -66.75 REMARK 500 1 VAL A 67 78.45 -113.46 REMARK 500 1 GLU A 70 139.03 -31.46 REMARK 500 1 LEU A 78 -75.54 -77.52 REMARK 500 1 LEU A 94 57.16 -163.32 REMARK 500 1 VAL A 95 99.04 -31.18 REMARK 500 1 GLU A 101 -3.29 95.53 REMARK 500 1 LYS A 102 -74.05 -86.75 REMARK 500 1 ASN A 104 34.07 -160.77 REMARK 500 1 ARG A 105 72.56 -114.03 REMARK 500 1 TYR A 117 75.03 -115.06 REMARK 500 1 CYS A 122 77.68 42.37 REMARK 500 1 GLN A 125 66.74 67.14 REMARK 500 1 LYS A 132 130.74 176.79 REMARK 500 1 LYS A 133 -79.84 153.12 REMARK 500 2 THR A 2 -92.07 35.51 REMARK 500 2 LYS A 3 21.09 -158.15 REMARK 500 2 ASP A 4 102.93 -58.51 REMARK 500 2 GLN A 5 -77.31 -65.55 REMARK 500 2 ASN A 6 99.12 2.14 REMARK 500 2 TRP A 9 66.45 -151.65 REMARK 500 2 GLU A 10 91.30 -42.14 REMARK 500 2 GLU A 12 -68.71 -100.89 REMARK 500 2 SER A 13 169.17 171.08 REMARK 500 2 ASN A 16 57.35 -100.85 REMARK 500 2 ASP A 27 158.85 162.71 REMARK 500 2 VAL A 44 51.97 -164.10 REMARK 500 2 ASP A 46 32.24 -152.98 REMARK 500 2 LEU A 63 56.14 -69.08 REMARK 500 2 PHE A 65 139.23 177.83 REMARK 500 2 GLU A 70 128.73 74.47 REMARK 500 2 GLU A 73 -166.85 -68.15 REMARK 500 2 THR A 75 72.32 -105.37 REMARK 500 2 ASP A 79 78.86 43.31 REMARK 500 REMARK 500 THIS ENTRY HAS 784 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RTL A 135 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B4M RELATED DB: PDB REMARK 900 NMR STRUCTURE OF APO CELLULAR RETINOL-BINDING PROTEIN II DBREF 1EII A 1 134 UNP P06768 RET2_RAT 1 134 SEQRES 1 A 134 MET THR LYS ASP GLN ASN GLY THR TRP GLU MET GLU SER SEQRES 2 A 134 ASN GLU ASN PHE GLU GLY TYR MET LYS ALA LEU ASP ILE SEQRES 3 A 134 ASP PHE ALA THR ARG LYS ILE ALA VAL ARG LEU THR GLN SEQRES 4 A 134 THR LYS ILE ILE VAL GLN ASP GLY ASP ASN PHE LYS THR SEQRES 5 A 134 LYS THR ASN SER THR PHE ARG ASN TYR ASP LEU ASP PHE SEQRES 6 A 134 THR VAL GLY VAL GLU PHE ASP GLU HIS THR LYS GLY LEU SEQRES 7 A 134 ASP GLY ARG ASN VAL LYS THR LEU VAL THR TRP GLU GLY SEQRES 8 A 134 ASN THR LEU VAL CYS VAL GLN LYS GLY GLU LYS GLU ASN SEQRES 9 A 134 ARG GLY TRP LYS GLN TRP VAL GLU GLY ASP LYS LEU TYR SEQRES 10 A 134 LEU GLU LEU THR CYS GLY ASP GLN VAL CYS ARG GLN VAL SEQRES 11 A 134 PHE LYS LYS LYS HET RTL A 135 51 HETNAM RTL RETINOL FORMUL 2 RTL C20 H30 O HELIX 1 1 GLU A 18 ALA A 23 1 6 HELIX 2 2 PHE A 28 ALA A 34 1 7 SHEET 1 B1 4 THR A 8 GLU A 15 0 SHEET 2 B1 4 ARG A 36 ASP A 46 -1 N LYS A 41 O TRP A 9 SHEET 3 B1 4 ASP A 48 SER A 56 -1 O LYS A 51 N VAL A 44 SHEET 4 B1 4 PHE A 58 THR A 66 -1 N PHE A 65 O PHE A 50 SHEET 1 B2 6 GLY A 68 THR A 75 0 SHEET 2 B2 6 ARG A 81 GLU A 90 -1 N THR A 85 O PHE A 71 SHEET 3 B2 6 THR A 93 GLN A 98 -1 N VAL A 95 O THR A 88 SHEET 4 B2 6 ARG A 105 GLU A 112 -1 N GLN A 109 O LEU A 94 SHEET 5 B2 6 LYS A 115 THR A 121 -1 N GLU A 119 O LYS A 108 SHEET 6 B2 6 GLN A 125 LYS A 132 -1 N GLN A 129 O LEU A 118 SITE 1 AC1 11 TYR A 20 GLN A 39 LYS A 41 ILE A 43 SITE 2 AC1 11 THR A 54 SER A 56 ARG A 59 TYR A 61 SITE 3 AC1 11 LEU A 78 TRP A 107 GLN A 109 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1