HEADER LYASE 01-MAR-00 1EJ7 TITLE CRYSTAL STRUCTURE OF UNACTIVATED TOBACCO RUBISCO WITH BOUND PHOSPHATE TITLE 2 IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUBISCO (LARGE SUBUNIT); COMPND 3 CHAIN: L; COMPND 4 EC: 4.1.1.39; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RUBISCO (SMALL SUBUNIT); COMPND 7 CHAIN: S; COMPND 8 EC: 4.1.1.39 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 3 ORGANISM_COMMON: COMMON TOBACCO; SOURCE 4 ORGANISM_TAXID: 4097; SOURCE 5 VARIANT: WISCONSIN-38; SOURCE 6 ORGAN: LEAF; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 9 ORGANISM_COMMON: COMMON TOBACCO; SOURCE 10 ORGANISM_TAXID: 4097; SOURCE 11 VARIANT: WISCONSIN-38; SOURCE 12 ORGAN: LEAF KEYWDS TIM BARREL, ALPHA/BETA BARREL, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.P.DUFF,T.J.ANDREWS,P.M.G.CURMI REVDAT 4 13-JUL-11 1EJ7 1 VERSN REVDAT 3 24-FEB-09 1EJ7 1 VERSN REVDAT 2 07-SEP-04 1EJ7 1 JRNL REVDAT 1 15-MAR-00 1EJ7 0 JRNL AUTH A.P.DUFF,T.J.ANDREWS,P.M.G.CURMI JRNL TITL THE TRANSITION BETWEEN THE OPEN AND CLOSED STATES OF RUBISCO JRNL TITL 2 IS TRIGGERED BY THE INTER-PHOSPHATE DISTANCE OF THE BOUND JRNL TITL 3 BISPHOSPHATE. JRNL REF J.MOL.BIOL. V. 298 903 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10801357 JRNL DOI 10.1006/JMBI.2000.3724 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.843 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 27448 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1372 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4608 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1EJ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-00. REMARK 100 THE RCSB ID CODE IS RCSB010629. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-97; NULL; NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 295; 295; 295; 295 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; NULL; NULL; NULL REMARK 200 RADIATION SOURCE : ROTATING ANODE; NULL; NULL; NULL REMARK 200 BEAMLINE : NULL; NULL; NULL; NULL REMARK 200 X-RAY GENERATOR MODEL : MACSCIENCE; NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL; NULL; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 2.54; NULL; NULL; NULL REMARK 200 MONOCHROMATOR : NULL; NULL; NULL; NULL REMARK 200 OPTICS : NULL; NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; NULL; NULL; NULL REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE; NULL; NULL; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27448 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 3.450 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL; NULL; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MICROL OF (TOBACCO RUBISCO 20-50MG/ REMARK 280 ML IN (TRIS-CL 50MM PH 7.4 AT 4DEGC, MGCL2 20MM, NAHCO3 20MM, REMARK 280 EDTA 0.1MM, BETA-MERCAPTOETHANOL 50MM)) AND 35 MICROL OF (K2HPO4 REMARK 280 200MM, NH4K2PO4 300MM, NAN3, PLUS HCL TO PH 5.2 AT 24DEGC) IS REMARK 280 SEALED, IN CONTACT, IN A 7MM GLASS CAPILLARY, LIQUID DIFFUSION, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 74.59000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 74.59000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 69.17000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 74.59000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 74.59000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 69.17000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 74.59000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 74.59000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 69.17000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 74.59000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 74.59000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 69.17000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 74.59000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 74.59000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 69.17000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 74.59000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 74.59000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 69.17000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 74.59000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 74.59000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 69.17000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 74.59000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 74.59000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 69.17000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: RUBISCO IS COMPRISED OF EIGHT LARGE SUBUNITS AND EIGHT REMARK 300 SMALL SUBUNITS. THE ASYMMETRIC UNIT CONTAINS ONE LARGE SUBUNIT AND REMARK 300 ONE SMALL SUBUNIT. THE OTHER SUBUNITS CAN BE OBTAINED BY APPLYING REMARK 300 CRYSTALLOGRAPHIC SYMMETRIES ON THE ASYMMETRIC UNIT. RUBISCO IS REMARK 300 COMPRISED OF EIGHT LARGE SUBUNITS AND EIGHT SMALL SUBUNITS. THE REMARK 300 ASYMMETRIC UNIT CONTAINS ONE LARGE SUBUNIT AND ONE SMALL SUBUNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXADECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXADECAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 97740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 128690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -508.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 149.18000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 149.18000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 149.18000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 149.18000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 149.18000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 138.34000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 149.18000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 138.34000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 138.34000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 149.18000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 149.18000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 138.34000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 750 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 864 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 873 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO L 3 REMARK 465 GLN L 4 REMARK 465 THR L 5 REMARK 465 GLU L 6 REMARK 465 THR L 7 REMARK 465 LYS L 8 REMARK 465 ALA L 9 REMARK 465 SER L 10 REMARK 465 VAL L 11 REMARK 465 GLY L 12 REMARK 465 PHE L 13 REMARK 465 LYS L 14 REMARK 465 ALA L 15 REMARK 465 GLY L 16 REMARK 465 VAL L 17 REMARK 465 LEU L 475 REMARK 465 ASP L 476 REMARK 465 LYS L 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS L 18 CG CD CE NZ REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ALA L 470 REMARK 475 ALA L 471 REMARK 475 VAL L 472 REMARK 475 ASP L 473 REMARK 475 VAL L 474 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB PHE L 469 N ALA L 470 1.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA L 470 N ALA L 470 CA -0.274 REMARK 500 ALA L 470 CA ALA L 470 C -0.227 REMARK 500 ALA L 471 N ALA L 471 CA -0.353 REMARK 500 ALA L 470 C ALA L 471 N -0.143 REMARK 500 ASP S 605 CA ASP S 605 C 0.183 REMARK 500 ASN S 606 N ASN S 606 CA 0.149 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU L 336 N - CA - C ANGL. DEV. = -22.3 DEGREES REMARK 500 GLU L 336 CA - C - N ANGL. DEV. = 14.5 DEGREES REMARK 500 GLU L 336 O - C - N ANGL. DEV. = -17.8 DEGREES REMARK 500 PHE L 469 CB - CA - C ANGL. DEV. = -31.1 DEGREES REMARK 500 PHE L 469 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 PHE L 469 CB - CG - CD2 ANGL. DEV. = -9.0 DEGREES REMARK 500 PHE L 469 CD1 - CG - CD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ALA L 470 CB - CA - C ANGL. DEV. = -9.0 DEGREES REMARK 500 PHE L 469 CA - C - N ANGL. DEV. = -16.0 DEGREES REMARK 500 PHE L 469 O - C - N ANGL. DEV. = 10.5 DEGREES REMARK 500 ALA L 470 CA - C - N ANGL. DEV. = -29.8 DEGREES REMARK 500 ALA L 470 O - C - N ANGL. DEV. = 26.2 DEGREES REMARK 500 ASP S 605 O - C - N ANGL. DEV. = -9.6 DEGREES REMARK 500 ARG S 608 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 VAL S 610 CA - C - N ANGL. DEV. = -30.0 DEGREES REMARK 500 VAL S 610 O - C - N ANGL. DEV. = 27.1 DEGREES REMARK 500 GLN S 611 C - N - CA ANGL. DEV. = -23.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR L 23 -35.54 -136.66 REMARK 500 SER L 62 -92.76 -150.64 REMARK 500 THR L 67 -133.74 -139.37 REMARK 500 ASP L 78 1.10 -69.74 REMARK 500 HIS L 153 -56.73 -130.51 REMARK 500 ASN L 207 -82.49 -124.23 REMARK 500 MET L 212 105.92 -167.31 REMARK 500 MET L 297 -2.33 83.87 REMARK 500 GLU L 336 -169.14 -61.85 REMARK 500 ASP L 357 94.48 -165.35 REMARK 500 VAL L 369 57.64 34.65 REMARK 500 PHE L 469 -142.09 179.36 REMARK 500 ALA L 470 168.84 172.11 REMARK 500 ALA L 471 -153.10 141.25 REMARK 500 GLU S 513 -148.94 68.62 REMARK 500 THR S 514 121.46 -38.06 REMARK 500 LEU S 515 -6.12 80.54 REMARK 500 GLU S 547 -67.41 -100.79 REMARK 500 LYS S 571 -120.16 63.14 REMARK 500 ARG S 608 15.58 -145.62 REMARK 500 CYS S 612 19.90 -142.16 REMARK 500 SER S 614 103.93 -174.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA L 471 VAL L 472 148.64 REMARK 500 VAL L 472 ASP L 473 142.98 REMARK 500 ASP L 473 VAL L 474 142.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 TYR L 269 25.0 L L OUTSIDE RANGE REMARK 500 GLU L 336 46.6 L L OUTSIDE RANGE REMARK 500 PHE L 469 24.8 L L OUTSIDE RANGE REMARK 500 ALA L 471 23.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH L 831 DISTANCE = 5.51 ANGSTROMS REMARK 525 HOH S 875 DISTANCE = 6.21 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 L 641 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 L 642 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 L 643 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8RUC RELATED DB: PDB REMARK 900 INITIAL PHASING MODEL DBREF 1EJ7 L 3 477 UNP P00876 RBL_TOBAC 3 477 DBREF 1EJ7 S 501 623 UNP P69249 RBS_TOBAC 58 180 SEQADV 1EJ7 ASP L 19 UNP P00876 GLU 19 CONFLICT SEQADV 1EJ7 VAL L 377 UNP P00876 GLU 377 CONFLICT SEQRES 1 L 475 PRO GLN THR GLU THR LYS ALA SER VAL GLY PHE LYS ALA SEQRES 2 L 475 GLY VAL LYS ASP TYR LYS LEU THR TYR TYR THR PRO GLU SEQRES 3 L 475 TYR GLN THR LYS ASP THR ASP ILE LEU ALA ALA PHE ARG SEQRES 4 L 475 VAL THR PRO GLN PRO GLY VAL PRO PRO GLU GLU ALA GLY SEQRES 5 L 475 ALA ALA VAL ALA ALA GLU SER SER THR GLY THR TRP THR SEQRES 6 L 475 THR VAL TRP THR ASP GLY LEU THR SER LEU ASP ARG TYR SEQRES 7 L 475 LYS GLY ARG CYS TYR ARG ILE GLU ARG VAL VAL GLY GLU SEQRES 8 L 475 LYS ASP GLN TYR ILE ALA TYR VAL ALA TYR PRO LEU ASP SEQRES 9 L 475 LEU PHE GLU GLU GLY SER VAL THR ASN MET PHE THR SER SEQRES 10 L 475 ILE VAL GLY ASN VAL PHE GLY PHE LYS ALA LEU ARG ALA SEQRES 11 L 475 LEU ARG LEU GLU ASP LEU ARG ILE PRO PRO ALA TYR VAL SEQRES 12 L 475 LYS THR PHE GLN GLY PRO PRO HIS GLY ILE GLN VAL GLU SEQRES 13 L 475 ARG ASP LYS LEU ASN LYS TYR GLY ARG PRO LEU LEU GLY SEQRES 14 L 475 CYS THR ILE LYS PRO LYS LEU GLY LEU SER ALA LYS ASN SEQRES 15 L 475 TYR GLY ARG ALA VAL TYR GLU CYS LEU ARG GLY GLY LEU SEQRES 16 L 475 ASP PHE THR LYS ASP ASP GLU ASN VAL ASN SER GLN PRO SEQRES 17 L 475 PHE MET ARG TRP ARG ASP ARG PHE LEU PHE CYS ALA GLU SEQRES 18 L 475 ALA LEU TYR LYS ALA GLN ALA GLU THR GLY GLU ILE LYS SEQRES 19 L 475 GLY HIS TYR LEU ASN ALA THR ALA GLY THR CYS GLU GLU SEQRES 20 L 475 MET ILE LYS ARG ALA VAL PHE ALA ARG GLU LEU GLY VAL SEQRES 21 L 475 PRO ILE VAL MET HIS ASP TYR LEU THR GLY GLY PHE THR SEQRES 22 L 475 ALA ASN THR SER LEU ALA HIS TYR CYS ARG ASP ASN GLY SEQRES 23 L 475 LEU LEU LEU HIS ILE HIS ARG ALA MET HIS ALA VAL ILE SEQRES 24 L 475 ASP ARG GLN LYS ASN HIS GLY ILE HIS PHE ARG VAL LEU SEQRES 25 L 475 ALA LYS ALA LEU ARG MET SER GLY GLY ASP HIS ILE HIS SEQRES 26 L 475 SER GLY THR VAL VAL GLY LYS LEU GLU GLY GLU ARG ASP SEQRES 27 L 475 ILE THR LEU GLY PHE VAL ASP LEU LEU ARG ASP ASP PHE SEQRES 28 L 475 VAL GLU GLN ASP ARG SER ARG GLY ILE TYR PHE THR GLN SEQRES 29 L 475 ASP TRP VAL SER LEU PRO GLY VAL LEU PRO VAL ALA SER SEQRES 30 L 475 GLY GLY ILE HIS VAL TRP HIS MET PRO ALA LEU THR GLU SEQRES 31 L 475 ILE PHE GLY ASP ASP SER VAL LEU GLN PHE GLY GLY GLY SEQRES 32 L 475 THR LEU GLY HIS PRO TRP GLY ASN ALA PRO GLY ALA VAL SEQRES 33 L 475 ALA ASN ARG VAL ALA LEU GLU ALA CYS VAL LYS ALA ARG SEQRES 34 L 475 ASN GLU GLY ARG ASP LEU ALA GLN GLU GLY ASN GLU ILE SEQRES 35 L 475 ILE ARG GLU ALA CYS LYS TRP SER PRO GLU LEU ALA ALA SEQRES 36 L 475 ALA CYS GLU VAL TRP LYS GLU ILE VAL PHE ASN PHE ALA SEQRES 37 L 475 ALA VAL ASP VAL LEU ASP LYS SEQRES 1 S 123 MET GLN VAL TRP PRO PRO ILE ASN LYS LYS LYS TYR GLU SEQRES 2 S 123 THR LEU SER TYR LEU PRO ASP LEU SER GLN GLU GLN LEU SEQRES 3 S 123 LEU SER GLU VAL GLU TYR LEU LEU LYS ASN GLY TRP VAL SEQRES 4 S 123 PRO CYS LEU GLU PHE GLU THR GLU HIS GLY PHE VAL TYR SEQRES 5 S 123 ARG GLU ASN ASN LYS SER PRO GLY TYR TYR ASP GLY ARG SEQRES 6 S 123 TYR TRP THR MET TRP LYS LEU PRO MET PHE GLY CYS THR SEQRES 7 S 123 ASP ALA THR GLN VAL LEU ALA GLU VAL GLU GLU ALA LYS SEQRES 8 S 123 LYS ALA TYR PRO GLN ALA TRP ILE ARG ILE ILE GLY PHE SEQRES 9 S 123 ASP ASN VAL ARG GLN VAL GLN CYS ILE SER PHE ILE ALA SEQRES 10 S 123 TYR LYS PRO GLU GLY TYR HET PO4 L 641 5 HET PO4 L 642 5 HET PO4 L 643 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 3(O4 P 3-) FORMUL 6 HOH *167(H2 O) HELIX 1 1 TYR L 20 TYR L 25 1 6 HELIX 2 2 PRO L 49 SER L 61 1 13 HELIX 3 3 VAL L 69 LEU L 74 5 6 HELIX 4 4 SER L 76 LYS L 81 1 6 HELIX 5 5 PRO L 104 PHE L 108 5 5 HELIX 6 6 SER L 112 GLY L 122 1 11 HELIX 7 7 ASN L 123 PHE L 127 5 5 HELIX 8 8 PRO L 141 LYS L 146 1 6 HELIX 9 9 GLY L 154 ASN L 163 1 10 HELIX 10 10 SER L 181 GLY L 195 1 15 HELIX 11 11 ARG L 213 GLY L 233 1 21 HELIX 12 12 THR L 246 GLY L 261 1 16 HELIX 13 13 TYR L 269 GLY L 288 1 20 HELIX 14 14 MET L 297 ARG L 303 1 7 HELIX 15 15 HIS L 310 GLY L 322 1 13 HELIX 16 16 GLY L 337 ASP L 351 1 15 HELIX 17 17 ARG L 358 GLY L 361 5 4 HELIX 18 18 HIS L 383 TRP L 385 5 3 HELIX 19 19 HIS L 386 GLY L 395 1 10 HELIX 20 20 GLY L 412 GLU L 433 1 22 HELIX 21 21 ASP L 436 GLY L 441 1 6 HELIX 22 22 GLU L 440 TRP L 451 1 12 HELIX 23 23 SER L 452 CYS L 459 1 8 HELIX 24 24 CYS L 459 PHE L 467 1 9 HELIX 25 25 SER S 522 GLY S 537 1 16 HELIX 26 26 ASP S 579 TYR S 594 1 16 SHEET 1 A 5 ARG L 83 ARG L 89 0 SHEET 2 A 5 TYR L 97 TYR L 103 -1 N ILE L 98 O GLU L 88 SHEET 3 A 5 ILE L 36 PRO L 44 -1 O ILE L 36 N TYR L 103 SHEET 4 A 5 LEU L 130 ARG L 139 -1 N ARG L 131 O THR L 43 SHEET 5 A 5 GLY L 308 ILE L 309 1 N GLY L 308 O LEU L 133 SHEET 1 B 9 LEU L 169 THR L 173 0 SHEET 2 B 9 PHE L 199 LYS L 201 1 N PHE L 199 O LEU L 170 SHEET 3 B 9 GLY L 237 ASN L 241 1 O GLY L 237 N THR L 200 SHEET 4 B 9 ILE L 264 ASP L 268 1 O ILE L 264 N LEU L 240 SHEET 5 B 9 LEU L 290 HIS L 294 1 O LEU L 290 N VAL L 265 SHEET 6 B 9 HIS L 325 HIS L 327 1 O HIS L 325 N ILE L 293 SHEET 7 B 9 LEU L 375 SER L 379 1 O LEU L 375 N ILE L 326 SHEET 8 B 9 VAL L 399 PHE L 402 1 O VAL L 399 N ALA L 378 SHEET 9 B 9 LEU L 169 THR L 173 1 O LEU L 169 N LEU L 400 SHEET 1 C 2 PHE L 353 VAL L 354 0 SHEET 2 C 2 GLN L 366 ASP L 367 -1 N GLN L 366 O VAL L 354 SHEET 1 D 4 THR S 568 TRP S 570 0 SHEET 2 D 4 VAL S 539 GLU S 545 -1 O LEU S 542 N TRP S 570 SHEET 3 D 4 TRP S 598 ASP S 605 -1 N TRP S 598 O GLU S 545 SHEET 4 D 4 VAL S 610 TYR S 618 -1 O VAL S 610 N ASP S 605 SSBOND 1 CYS L 247 CYS L 247 1555 7556 2.25 CISPEP 1 LYS L 175 PRO L 176 0 0.00 SITE 1 AC1 6 TRP L 66 GLY L 381 PHE L 402 GLY L 403 SITE 2 AC1 6 GLY L 404 HOH L 870 SITE 1 AC2 4 ARG L 295 HIS L 298 HOH L 714 HOH L 850 SITE 1 AC3 5 ARG L 134 LYS L 305 HIS L 310 HOH L 811 SITE 2 AC3 5 HOH L 819 CRYST1 149.180 149.180 138.340 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006703 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006703 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007229 0.00000