data_1EKH # _entry.id 1EKH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1EKH RCSB RCSB010674 WWPDB D_1000010674 # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.pdb_id 1EKH _pdbx_database_PDB_obs_spr.replace_pdb_id 1CQB _pdbx_database_PDB_obs_spr.date 2000-03-20 _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1EKI _pdbx_database_related.details 'the average structure' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EKH _pdbx_database_status.recvd_initial_deposition_date 2000-03-08 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Gochin, M.' _audit_author.pdbx_ordinal 1 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'A high-resolution structure of a DNA-chromomycin-Co(II) complex determined from pseudocontact shifts in nuclear magnetic resonance.' 'Structure Fold.Des.' 8 441 452 2000 FODEFH UK 0969-2126 1263 ? 10801486 '10.1016/S0969-2126(00)00124-6' 1 'Structure determination by restrained molecular dynamics using NMR pseudocontact shifts as experimentally determined constraints' J.Am.Chem.Soc. 121 9276 9285 1999 JACSAT US 0002-7863 0004 ? ? 10.1021/ja9904540 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gochin, M.' 1 ? 1 'Tu, K.' 2 ? 1 'Gochin, M.' 3 ? # _cell.entry_id 1EKH _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EKH _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*TP*GP*GP*CP*CP*AP*A)-3') ; 2426.617 2 ? ? ? 'TWO MOLECULES OF THE DRUG CHROMOMYCIN A3 (1GL-2GL-DXB-DDA-DDA-1AR, CHAINS C, AND D) ARE BOUND IN THE MINOR GROOVE' 2 branched man '2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose-(1-3)-4-O-acetyl-2,6-dideoxy-beta-D-galactopyranose' 334.363 2 ? ? ? ? 3 branched man '3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose-(1-3)-beta-D-Olivopyranose-(1-3)-beta-D-Olivopyranose' 464.504 2 ? ? ? ? 4 non-polymer syn 'COBALT (II) ION' 58.933 1 ? ? ? ? 5 non-polymer syn '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' 420.410 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DT)(DG)(DG)(DC)(DC)(DA)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TTGGCCAA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DC n 1 7 DA n 1 8 DA n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1EKH _struct_ref.pdbx_db_accession 1EKH _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1EKH A 1 ? 8 ? 1EKH 1 ? 8 ? 1 8 2 1 1EKH B 1 ? 8 ? 1EKH 11 ? 18 ? 11 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1GL 'D-saccharide, alpha linking' . 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose ? 'C7 H14 O4' 162.184 2GL 'D-saccharide, beta linking' . 4-O-acetyl-2,6-dideoxy-beta-D-galactopyranose ? 'C8 H14 O5' 190.194 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 CPH non-polymer . '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' None 'C21 H24 O9' 420.410 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DDA 'D-saccharide, beta linking' . beta-D-Olivopyranose 2,6-DIDEOXY-BETA-D-MANNOSE 'C6 H12 O4' 148.157 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 ERI 'L-saccharide, alpha linking' n 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose ? 'C9 H16 O5' 204.220 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 COSY 1 3 1 TOCSY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength '100mM NACL' _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents 'D2O, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model OMEGA500 _pdbx_nmr_spectrometer.manufacturer GE _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1EKH _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'Paramagnetic Shifts and NOEs used in refinement. Other REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1EKH _pdbx_nmr_details.text ;THE STRUCTURE WAS DETERMINED USING PSEUDOCONTACT SHIFTS IN THE NMR SPECTRUM. PSEUDOCONTACT SHIFTS WERE MEASURED AS THE DIFFERENCE IN THE CHEMICAL SHIFT BETWEEN THE CO(II) COMPLEX AND THE ZN(II) COMPLEX. IN MODELS 1-3, ONLY SHIFTS WERE USED; IN MODELS 4-6 SHIFTS + NOE'S WERE USED IN REFINEMENT. ; # _pdbx_nmr_ensemble.entry_id 1EKH _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 6 _pdbx_nmr_ensemble.conformer_selection_criteria 'MINIMIZED AVERAGED COORDINATES FROM 6 RUNS' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal NMRPipe 1.7 processing 'DeLaglio and Bax' 1 Sparky 3.0 'data analysis' 'Kneller and Goddard' 2 X-PLOR '3.0, 3.851' refinement 'Brunger (modified by Gochin and Tu)' 3 Felix 2.1 'data analysis' Biosym 4 # _exptl.entry_id 1EKH _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1EKH _struct.title 'NMR STRUCTURE OF D(TTGGCCAA)2 BOUND TO CHROMOMYCIN-A3 AND COBALT' _struct.pdbx_descriptor 'NMR STRUCTURE OF D(TTGGCCAA)2 BOUND TO CHROMOMYCIN-A3 AND COBALT' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EKH _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'drug bound in the minor groove of DNA, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C 2GL . O3 ? ? ? 1_555 C 1GL . C1 ? ? C 2GL 1 C 1GL 2 1_555 ? ? ? ? ? ? ? 1.457 sing ? covale2 covale both ? D 2GL . O3 ? ? ? 1_555 D 1GL . C1 ? ? D 2GL 1 D 1GL 2 1_555 ? ? ? ? ? ? ? 1.454 sing ? covale3 covale both ? E DDA . O3 ? ? ? 1_555 E DDA . C1 ? ? E DDA 1 E DDA 2 1_555 ? ? ? ? ? ? ? 1.423 sing ? covale4 covale both ? E DDA . O3 ? ? ? 1_555 E ERI . C1 ? ? E DDA 2 E ERI 3 1_555 ? ? ? ? ? ? ? 1.443 sing ? covale5 covale both ? F DDA . O3 ? ? ? 1_555 F DDA . C1 ? ? F DDA 1 F DDA 2 1_555 ? ? ? ? ? ? ? 1.424 sing ? covale6 covale both ? F DDA . O3 ? ? ? 1_555 F ERI . C1 ? ? F DDA 2 F ERI 3 1_555 ? ? ? ? ? ? ? 1.433 sing ? metalc1 metalc ? ? H CPH . O9 ? ? ? 1_555 G CO . CO ? ? A CPH 33 A CO 41 1_555 ? ? ? ? ? ? ? 1.911 ? ? metalc2 metalc ? ? H CPH . O1 ? ? ? 1_555 G CO . CO ? ? A CPH 33 A CO 41 1_555 ? ? ? ? ? ? ? 1.965 ? ? metalc3 metalc ? ? H CPH . C9 ? ? ? 1_555 G CO . CO ? ? A CPH 33 A CO 41 1_555 ? ? ? ? ? ? ? 2.387 ? ? metalc4 metalc ? ? G CO . CO ? ? ? 1_555 I CPH . O9 ? ? A CO 41 B CPH 23 1_555 ? ? ? ? ? ? ? 1.919 ? ? metalc5 metalc ? ? G CO . CO ? ? ? 1_555 I CPH . O1 ? ? A CO 41 B CPH 23 1_555 ? ? ? ? ? ? ? 2.023 ? ? metalc6 metalc ? ? G CO . CO ? ? ? 1_555 I CPH . C9 ? ? A CO 41 B CPH 23 1_555 ? ? ? ? ? ? ? 2.486 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 1 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 1 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 2 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 2 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 3 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 3 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 3 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 4 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 4 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 4 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 5 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 5 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 5 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 6 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 6 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 6 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 7 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 7 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 8 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 8 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _database_PDB_matrix.entry_id 1EKH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1EKH _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO H N O P # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 ;DC A 6 HAS WRONG CHIRALITY AT ATOM C4' ; 2 ;DA A 8 HAS WRONG CHIRALITY AT ATOM C3' ; 3 ;DA B 18 HAS WRONG CHIRALITY AT ATOM C4' ; 4 ;DA B 18 HAS WRONG CHIRALITY AT ATOM C3' ; 5 '2GL D 1 HAS WRONG CHIRALITY AT ATOM C5' 6 'DDA E 1 HAS WRONG CHIRALITY AT ATOM C4' 7 'DDA F 1 HAS WRONG CHIRALITY AT ATOM C4' 8 ;CPH A 33 HAS WRONG CHIRALITY AT ATOM C4' ; 9 ;DA A 8 HAS WRONG CHIRALITY AT ATOM C4' ; 10 ;CPH A 33 HAS WRONG CHIRALITY AT ATOM C1' ; 11 ;CPH B 23 HAS WRONG CHIRALITY AT ATOM C1' ; 12 ;DT B 11 HAS WRONG CHIRALITY AT ATOM C1' ; 13 ;DA A 7 HAS WRONG CHIRALITY AT ATOM C3' ; # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DA 8 8 8 DA DA A . n B 1 1 DT 1 11 11 DT DT B . n B 1 2 DT 2 12 12 DT DT B . n B 1 3 DG 3 13 13 DG DG B . n B 1 4 DG 4 14 14 DG DG B . n B 1 5 DC 5 15 15 DC DC B . n B 1 6 DC 6 16 16 DC DC B . n B 1 7 DA 7 17 17 DA DA B . n B 1 8 DA 8 18 18 DA DA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 CO 1 41 41 CO CO A . H 5 CPH 1 33 33 CPH CPH A . I 5 CPH 1 23 23 CPH CPH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O9 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 O1 ? H CPH . ? A CPH 33 ? 1_555 93.6 ? 2 O9 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 C9 ? H CPH . ? A CPH 33 ? 1_555 36.3 ? 3 O1 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 C9 ? H CPH . ? A CPH 33 ? 1_555 78.0 ? 4 O9 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 O9 ? I CPH . ? B CPH 23 ? 1_555 134.2 ? 5 O1 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 O9 ? I CPH . ? B CPH 23 ? 1_555 123.1 ? 6 C9 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 O9 ? I CPH . ? B CPH 23 ? 1_555 158.6 ? 7 O9 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 O1 ? I CPH . ? B CPH 23 ? 1_555 124.2 ? 8 O1 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 O1 ? I CPH . ? B CPH 23 ? 1_555 83.5 ? 9 C9 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 O1 ? I CPH . ? B CPH 23 ? 1_555 89.7 ? 10 O9 ? I CPH . ? B CPH 23 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 O1 ? I CPH . ? B CPH 23 ? 1_555 89.2 ? 11 O9 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 C9 ? I CPH . ? B CPH 23 ? 1_555 160.7 ? 12 O1 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 C9 ? I CPH . ? B CPH 23 ? 1_555 90.1 ? 13 C9 ? H CPH . ? A CPH 33 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 C9 ? I CPH . ? B CPH 23 ? 1_555 161.7 ? 14 O9 ? I CPH . ? B CPH 23 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 C9 ? I CPH . ? B CPH 23 ? 1_555 34.3 ? 15 O1 ? I CPH . ? B CPH 23 ? 1_555 CO ? G CO . ? A CO 41 ? 1_555 C9 ? I CPH . ? B CPH 23 ? 1_555 75.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-03-20 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-12-28 5 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 5 'Structure model' Advisory 5 5 'Structure model' 'Atomic model' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' atom_site 2 5 'Structure model' chem_comp 3 5 'Structure model' database_PDB_caveat 4 5 'Structure model' entity 5 5 'Structure model' pdbx_branch_scheme 6 5 'Structure model' pdbx_chem_comp_identifier 7 5 'Structure model' pdbx_entity_branch 8 5 'Structure model' pdbx_entity_branch_descriptor 9 5 'Structure model' pdbx_entity_branch_link 10 5 'Structure model' pdbx_entity_branch_list 11 5 'Structure model' pdbx_entity_nonpoly 12 5 'Structure model' pdbx_nmr_software 13 5 'Structure model' pdbx_nonpoly_scheme 14 5 'Structure model' pdbx_struct_assembly_gen 15 5 'Structure model' pdbx_struct_conn_angle 16 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 17 5 'Structure model' pdbx_validate_chiral 18 5 'Structure model' pdbx_validate_close_contact 19 5 'Structure model' struct_asym 20 5 'Structure model' struct_conn 21 5 'Structure model' struct_site 22 5 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_atom_site.B_iso_or_equiv' 2 5 'Structure model' '_atom_site.Cartn_x' 3 5 'Structure model' '_atom_site.Cartn_y' 4 5 'Structure model' '_atom_site.Cartn_z' 5 5 'Structure model' '_atom_site.auth_asym_id' 6 5 'Structure model' '_atom_site.auth_atom_id' 7 5 'Structure model' '_atom_site.auth_comp_id' 8 5 'Structure model' '_atom_site.auth_seq_id' 9 5 'Structure model' '_atom_site.label_asym_id' 10 5 'Structure model' '_atom_site.label_atom_id' 11 5 'Structure model' '_atom_site.label_comp_id' 12 5 'Structure model' '_atom_site.label_entity_id' 13 5 'Structure model' '_atom_site.type_symbol' 14 5 'Structure model' '_chem_comp.mon_nstd_flag' 15 5 'Structure model' '_chem_comp.name' 16 5 'Structure model' '_chem_comp.type' 17 5 'Structure model' '_pdbx_nmr_software.name' 18 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 27 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 28 5 'Structure model' '_pdbx_struct_conn_angle.value' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O1 E DDA 1 ? ? C2 B CPH 23 ? ? 1.43 2 1 O1 D 2GL 1 ? ? C6 B CPH 23 ? ? 1.44 3 1 O1 C 2GL 1 ? ? C6 A CPH 33 ? ? 1.45 4 1 O1 F DDA 1 ? ? C2 A CPH 33 ? ? 1.45 5 2 O1 E DDA 1 ? ? C2 B CPH 23 ? ? 1.41 6 2 O1 F DDA 1 ? ? C2 A CPH 33 ? ? 1.44 7 2 O1 C 2GL 1 ? ? C6 A CPH 33 ? ? 1.44 8 2 O1 D 2GL 1 ? ? C6 B CPH 23 ? ? 1.44 9 3 O1 E DDA 1 ? ? C2 B CPH 23 ? ? 1.42 10 3 O1 D 2GL 1 ? ? C6 B CPH 23 ? ? 1.45 11 3 O1 C 2GL 1 ? ? C6 A CPH 33 ? ? 1.45 12 3 O1 F DDA 1 ? ? C2 A CPH 33 ? ? 1.48 13 4 O1 E DDA 1 ? ? C2 B CPH 23 ? ? 1.41 14 4 O1 F DDA 1 ? ? C2 A CPH 33 ? ? 1.41 15 4 O1 D 2GL 1 ? ? C6 B CPH 23 ? ? 1.44 16 4 O1 C 2GL 1 ? ? C6 A CPH 33 ? ? 1.44 17 5 O1 D 2GL 1 ? ? C6 B CPH 23 ? ? 1.42 18 5 O1 E DDA 1 ? ? C2 B CPH 23 ? ? 1.42 19 5 O1 C 2GL 1 ? ? C6 A CPH 33 ? ? 1.43 20 5 O1 F DDA 1 ? ? C2 A CPH 33 ? ? 1.44 21 6 O1 D 2GL 1 ? ? C6 B CPH 23 ? ? 1.43 22 6 O1 C 2GL 1 ? ? C6 A CPH 33 ? ? 1.43 23 6 O1 E DDA 1 ? ? C2 B CPH 23 ? ? 1.43 24 6 O1 F DDA 1 ? ? C2 A CPH 33 ? ? 1.44 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 5 _pdbx_validate_rmsd_bond.auth_atom_id_1 N1 _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 DT _pdbx_validate_rmsd_bond.auth_seq_id_1 11 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 C2 _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 DT _pdbx_validate_rmsd_bond.auth_seq_id_2 11 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.428 _pdbx_validate_rmsd_bond.bond_target_value 1.376 _pdbx_validate_rmsd_bond.bond_deviation 0.052 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.008 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DG 3 ? ? 129.13 119.70 9.43 1.20 Y 2 1 P A DG 3 ? ? "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? 132.27 120.90 11.37 1.60 N 3 1 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DG 4 ? ? 127.42 119.70 7.72 1.20 Y 4 1 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 133.29 120.90 12.39 1.60 N 5 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 101.95 104.50 -2.55 0.40 N 6 1 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 126.18 119.90 6.28 0.70 N 7 1 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DC 5 ? ? 127.40 119.70 7.70 1.20 Y 8 1 P A DC 5 ? ? "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? 130.80 120.90 9.90 1.60 N 9 1 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 101.53 104.50 -2.97 0.40 N 10 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 114.52 108.30 6.22 0.30 N 11 1 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DC 6 ? ? 137.58 119.70 17.88 1.20 Y 12 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 115.49 108.30 7.19 0.30 N 13 1 C6 A DC 6 ? ? N1 A DC 6 ? ? C2 A DC 6 ? ? 117.03 120.30 -3.27 0.40 N 14 1 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DA 7 ? ? 129.67 119.70 9.97 1.20 Y 15 1 P A DA 7 ? ? "O5'" A DA 7 ? ? "C5'" A DA 7 ? ? 131.60 120.90 10.70 1.60 N 16 1 "C3'" A DA 7 ? ? "O3'" A DA 7 ? ? P A DA 8 ? ? 137.08 119.70 17.38 1.20 Y 17 1 P B DT 12 ? ? "O5'" B DT 12 ? ? "C5'" B DT 12 ? ? 130.73 120.90 9.83 1.60 N 18 1 "C3'" B DT 12 ? ? "O3'" B DT 12 ? ? P B DG 13 ? ? 128.27 119.70 8.57 1.20 Y 19 1 P B DG 13 ? ? "O5'" B DG 13 ? ? "C5'" B DG 13 ? ? 131.70 120.90 10.80 1.60 N 20 1 P B DG 14 ? ? "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? 132.64 120.90 11.74 1.60 N 21 1 N3 B DG 14 ? ? C2 B DG 14 ? ? N2 B DG 14 ? ? 125.31 119.90 5.41 0.70 N 22 1 "C3'" B DG 14 ? ? "O3'" B DG 14 ? ? P B DC 15 ? ? 128.78 119.70 9.08 1.20 Y 23 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 110.80 108.30 2.50 0.30 N 24 1 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DA 18 ? ? 134.45 119.70 14.75 1.20 Y 25 2 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DG 3 ? ? 127.19 119.70 7.49 1.20 Y 26 2 P A DG 3 ? ? "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? 132.16 120.90 11.26 1.60 N 27 2 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 133.19 120.90 12.29 1.60 N 28 2 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 102.09 104.50 -2.41 0.40 N 29 2 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 126.41 119.90 6.51 0.70 N 30 2 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DC 5 ? ? 129.01 119.70 9.31 1.20 Y 31 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.25 108.30 1.95 0.30 N 32 2 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DC 6 ? ? 133.80 119.70 14.10 1.20 Y 33 2 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.81 108.30 3.51 0.30 N 34 2 "C3'" A DA 7 ? ? "O3'" A DA 7 ? ? P A DA 8 ? ? 136.27 119.70 16.57 1.20 Y 35 2 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 110.49 108.30 2.19 0.30 N 36 2 "C3'" B DT 12 ? ? "O3'" B DT 12 ? ? P B DG 13 ? ? 136.13 119.70 16.43 1.20 Y 37 2 P B DG 14 ? ? "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? 132.12 120.90 11.22 1.60 N 38 2 N3 B DG 14 ? ? C2 B DG 14 ? ? N2 B DG 14 ? ? 126.16 119.90 6.26 0.70 N 39 2 "C3'" B DG 14 ? ? "O3'" B DG 14 ? ? P B DC 15 ? ? 128.36 119.70 8.66 1.20 Y 40 2 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 111.05 108.30 2.75 0.30 N 41 2 N1 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 122.54 118.90 3.64 0.60 N 42 2 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DA 18 ? ? 138.24 119.70 18.54 1.20 Y 43 3 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DG 3 ? ? 128.89 119.70 9.19 1.20 Y 44 3 P A DG 3 ? ? "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? 131.62 120.90 10.72 1.60 N 45 3 N3 A DG 3 ? ? C2 A DG 3 ? ? N2 A DG 3 ? ? 124.18 119.90 4.28 0.70 N 46 3 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DG 4 ? ? 128.91 119.70 9.21 1.20 Y 47 3 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 133.48 120.90 12.58 1.60 N 48 3 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 101.80 104.50 -2.70 0.40 N 49 3 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.43 108.30 2.13 0.30 N 50 3 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 126.65 119.90 6.75 0.70 N 51 3 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.68 108.30 2.38 0.30 N 52 3 "C4'" A DC 6 ? ? "C3'" A DC 6 ? ? "C2'" A DC 6 ? ? 92.71 102.20 -9.49 0.70 N 53 3 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.84 108.30 2.54 0.30 N 54 3 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DA 7 ? ? 134.41 119.70 14.71 1.20 Y 55 3 "C3'" A DA 7 ? ? "O3'" A DA 7 ? ? P A DA 8 ? ? 131.87 119.70 12.17 1.20 Y 56 3 P B DT 12 ? ? "O5'" B DT 12 ? ? "C5'" B DT 12 ? ? 133.71 120.90 12.81 1.60 N 57 3 "C3'" B DG 13 ? ? "O3'" B DG 13 ? ? P B DG 14 ? ? 128.13 119.70 8.43 1.20 Y 58 3 P B DG 14 ? ? "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? 134.12 120.90 13.22 1.60 N 59 3 "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? "C2'" B DG 14 ? ? 98.00 102.20 -4.20 0.70 N 60 3 N3 B DG 14 ? ? C2 B DG 14 ? ? N2 B DG 14 ? ? 125.87 119.90 5.97 0.70 N 61 3 "C3'" B DG 14 ? ? "O3'" B DG 14 ? ? P B DC 15 ? ? 129.94 119.70 10.24 1.20 Y 62 3 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 111.62 108.30 3.32 0.30 N 63 3 N1 B DC 15 ? ? C2 B DC 15 ? ? O2 B DC 15 ? ? 122.51 118.90 3.61 0.60 N 64 3 "C3'" B DC 15 ? ? "O3'" B DC 15 ? ? P B DC 16 ? ? 130.85 119.70 11.15 1.20 Y 65 3 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? N1 B DC 16 ? ? 111.40 108.30 3.10 0.30 N 66 3 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DA 18 ? ? 135.85 119.70 16.15 1.20 Y 67 4 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.37 108.30 2.07 0.30 N 68 4 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.80 108.30 3.50 0.30 N 69 4 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DG 3 ? ? 127.37 119.70 7.67 1.20 Y 70 4 P A DG 3 ? ? "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? 132.16 120.90 11.26 1.60 N 71 4 "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? "C2'" A DG 3 ? ? 94.36 102.20 -7.84 0.70 N 72 4 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DG 4 ? ? 137.01 119.70 17.31 1.20 Y 73 4 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 140.27 120.90 19.37 1.60 N 74 4 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 101.82 104.50 -2.68 0.40 N 75 4 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 97.68 102.20 -4.52 0.70 N 76 4 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 125.89 119.90 5.99 0.70 N 77 4 "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? 97.91 102.20 -4.29 0.70 N 78 4 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.25 108.30 2.95 0.30 N 79 4 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.14 108.30 1.84 0.30 N 80 4 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DA 7 ? ? 127.13 119.70 7.43 1.20 Y 81 4 P A DA 7 ? ? "O5'" A DA 7 ? ? "C5'" A DA 7 ? ? 133.50 120.90 12.60 1.60 N 82 4 "C3'" A DA 7 ? ? "O3'" A DA 7 ? ? P A DA 8 ? ? 133.77 119.70 14.07 1.20 Y 83 4 P A DA 8 ? ? "O5'" A DA 8 ? ? "C5'" A DA 8 ? ? 134.71 120.90 13.81 1.60 N 84 4 "O4'" B DT 11 ? ? "C1'" B DT 11 ? ? N1 B DT 11 ? ? 110.28 108.30 1.98 0.30 N 85 4 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 110.85 108.30 2.55 0.30 N 86 4 "C4'" B DG 13 ? ? "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? 94.17 102.20 -8.03 0.70 N 87 4 "C3'" B DG 13 ? ? "O3'" B DG 13 ? ? P B DG 14 ? ? 137.72 119.70 18.02 1.20 Y 88 4 P B DG 14 ? ? "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? 138.19 120.90 17.29 1.60 N 89 4 N3 B DG 14 ? ? C2 B DG 14 ? ? N2 B DG 14 ? ? 126.64 119.90 6.74 0.70 N 90 4 "C3'" B DG 14 ? ? "O3'" B DG 14 ? ? P B DC 15 ? ? 127.28 119.70 7.58 1.20 Y 91 4 "C1'" B DC 15 ? ? "O4'" B DC 15 ? ? "C4'" B DC 15 ? ? 104.05 110.10 -6.05 1.00 N 92 4 "C4'" B DC 15 ? ? "C3'" B DC 15 ? ? "C2'" B DC 15 ? ? 96.99 102.20 -5.21 0.70 N 93 4 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 112.75 108.30 4.45 0.30 N 94 4 "C3'" B DC 16 ? ? "O3'" B DC 16 ? ? P B DA 17 ? ? 128.82 119.70 9.12 1.20 Y 95 4 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DA 18 ? ? 127.56 119.70 7.86 1.20 Y 96 5 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.43 108.30 2.13 0.30 N 97 5 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.89 108.30 2.59 0.30 N 98 5 "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? "C2'" A DG 3 ? ? 93.84 102.20 -8.36 0.70 N 99 5 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DG 4 ? ? 137.39 119.70 17.69 1.20 Y 100 5 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 137.81 120.90 16.91 1.60 N 101 5 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 126.77 119.90 6.87 0.70 N 102 5 P A DC 6 ? ? "O5'" A DC 6 ? ? "C5'" A DC 6 ? ? 133.04 120.90 12.14 1.60 N 103 5 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DA 7 ? ? 141.72 119.70 22.02 1.20 Y 104 5 "C3'" A DA 7 ? ? "O3'" A DA 7 ? ? P A DA 8 ? ? 134.49 119.70 14.79 1.20 Y 105 5 "O4'" B DT 11 ? ? "C1'" B DT 11 ? ? N1 B DT 11 ? ? 113.10 108.30 4.80 0.30 N 106 5 N3 B DT 11 ? ? C2 B DT 11 ? ? O2 B DT 11 ? ? 118.68 122.30 -3.62 0.60 N 107 5 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 111.19 108.30 2.89 0.30 N 108 5 "C4'" B DG 13 ? ? "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? 94.13 102.20 -8.07 0.70 N 109 5 "C3'" B DG 13 ? ? "O3'" B DG 13 ? ? P B DG 14 ? ? 137.41 119.70 17.71 1.20 Y 110 5 P B DG 14 ? ? "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? 137.03 120.90 16.13 1.60 N 111 5 N3 B DG 14 ? ? C2 B DG 14 ? ? N2 B DG 14 ? ? 125.52 119.90 5.62 0.70 N 112 5 "C3'" B DC 15 ? ? "O3'" B DC 15 ? ? P B DC 16 ? ? 133.20 119.70 13.50 1.20 Y 113 5 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? N1 B DC 16 ? ? 111.39 108.30 3.09 0.30 N 114 5 "C3'" B DC 16 ? ? "O3'" B DC 16 ? ? P B DA 17 ? ? 131.90 119.70 12.20 1.20 Y 115 5 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DA 18 ? ? 134.17 119.70 14.47 1.20 Y 116 5 P B DA 18 ? ? "O5'" B DA 18 ? ? "C5'" B DA 18 ? ? 135.57 120.90 14.67 1.60 N 117 6 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.50 108.30 2.20 0.30 N 118 6 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.04 108.30 2.74 0.30 N 119 6 P A DG 3 ? ? "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? 133.22 120.90 12.32 1.60 N 120 6 "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? "C2'" A DG 3 ? ? 94.41 102.20 -7.79 0.70 N 121 6 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DG 4 ? ? 130.53 119.70 10.83 1.20 Y 122 6 P A DG 4 ? ? "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? 139.13 120.90 18.23 1.60 N 123 6 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 101.71 104.50 -2.79 0.40 N 124 6 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 126.43 119.90 6.53 0.70 N 125 6 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DC 5 ? ? 127.38 119.70 7.68 1.20 Y 126 6 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.43 108.30 4.13 0.30 N 127 6 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 114.39 108.30 6.09 0.30 N 128 6 C6 A DC 6 ? ? N1 A DC 6 ? ? C2 A DC 6 ? ? 117.83 120.30 -2.47 0.40 N 129 6 "C3'" A DA 7 ? ? "C2'" A DA 7 ? ? "C1'" A DA 7 ? ? 96.30 102.40 -6.10 0.80 N 130 6 "O4'" B DT 11 ? ? "C1'" B DT 11 ? ? N1 B DT 11 ? ? 110.10 108.30 1.80 0.30 N 131 6 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 110.97 108.30 2.67 0.30 N 132 6 P B DG 13 ? ? "O5'" B DG 13 ? ? "C5'" B DG 13 ? ? 131.56 120.90 10.66 1.60 N 133 6 "C4'" B DG 13 ? ? "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? 94.00 102.20 -8.20 0.70 N 134 6 "C3'" B DG 13 ? ? "O3'" B DG 13 ? ? P B DG 14 ? ? 135.77 119.70 16.07 1.20 Y 135 6 P B DG 14 ? ? "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? 138.55 120.90 17.65 1.60 N 136 6 N3 B DG 14 ? ? C2 B DG 14 ? ? N2 B DG 14 ? ? 127.07 119.90 7.17 0.70 N 137 6 "C3'" B DG 14 ? ? "O3'" B DG 14 ? ? P B DC 15 ? ? 128.26 119.70 8.56 1.20 Y 138 6 "C4'" B DC 15 ? ? "C3'" B DC 15 ? ? "C2'" B DC 15 ? ? 96.90 102.20 -5.30 0.70 N 139 6 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 112.61 108.30 4.31 0.30 N 140 6 "C3'" B DC 15 ? ? "O3'" B DC 15 ? ? P B DC 16 ? ? 136.28 119.70 16.58 1.20 Y 141 6 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? N1 B DC 16 ? ? 113.02 108.30 4.72 0.30 N 142 6 P B DA 17 ? ? "O5'" B DA 17 ? ? "C5'" B DA 17 ? ? 133.96 120.90 13.06 1.60 N 143 6 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DA 18 ? ? 139.89 119.70 20.19 1.20 Y # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 6 ? ? 0.068 'SIDE CHAIN' 2 2 DT B 11 ? ? 0.066 'SIDE CHAIN' 3 2 DG B 14 ? ? 0.066 'SIDE CHAIN' 4 3 DT A 1 ? ? 0.087 'SIDE CHAIN' 5 3 DC A 6 ? ? 0.129 'SIDE CHAIN' 6 3 DA A 8 ? ? 0.059 'SIDE CHAIN' 7 3 DT B 11 ? ? 0.079 'SIDE CHAIN' 8 3 DG B 13 ? ? 0.064 'SIDE CHAIN' 9 4 DT A 2 ? ? 0.094 'SIDE CHAIN' 10 4 DC A 6 ? ? 0.075 'SIDE CHAIN' 11 4 DT B 12 ? ? 0.089 'SIDE CHAIN' 12 4 DG B 14 ? ? 0.057 'SIDE CHAIN' 13 4 DA B 18 ? ? 0.091 'SIDE CHAIN' 14 5 DT A 2 ? ? 0.073 'SIDE CHAIN' 15 5 DT B 11 ? ? 0.090 'SIDE CHAIN' 16 6 DT A 2 ? ? 0.071 'SIDE CHAIN' 17 6 DG A 4 ? ? 0.070 'SIDE CHAIN' 18 6 DC A 6 ? ? 0.087 'SIDE CHAIN' 19 6 DA A 8 ? ? 0.082 'SIDE CHAIN' 20 6 DT B 12 ? ? 0.088 'SIDE CHAIN' 21 6 DG B 14 ? ? 0.076 'SIDE CHAIN' 22 6 DC B 16 ? ? 0.082 'SIDE CHAIN' 23 6 DA B 17 ? ? 0.069 'SIDE CHAIN' # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C4'" ? A DC 6 ? 'WRONG HAND' . 2 2 "C3'" ? A DA 8 ? 'WRONG HAND' . 3 2 "C4'" ? B DA 18 ? 'WRONG HAND' . 4 3 "C3'" ? A DA 8 ? 'WRONG HAND' . 5 3 "C3'" ? B DA 18 ? 'WRONG HAND' . 6 3 C5 ? D 2GL 1 ? 'WRONG HAND' . 7 3 C4 ? E DDA 1 ? 'WRONG HAND' . 8 3 C4 ? F DDA 1 ? 'WRONG HAND' . 9 3 "C4'" ? A CPH 33 ? 'WRONG HAND' . 10 4 "C4'" ? A DA 8 ? 'WRONG HAND' . 11 4 "C1'" ? A CPH 33 ? PLANAR . 12 4 "C4'" ? A CPH 33 ? 'WRONG HAND' . 13 4 "C1'" ? B CPH 23 ? PLANAR . 14 5 "C3'" ? A DA 8 ? 'WRONG HAND' . 15 5 "C1'" ? B DT 11 ? 'WRONG HAND' . 16 5 "C4'" ? B DA 18 ? 'WRONG HAND' . 17 5 "C1'" ? A CPH 33 ? PLANAR . 18 5 "C1'" ? B CPH 23 ? PLANAR . 19 6 "C3'" ? A DA 7 ? 'WRONG HAND' . 20 6 "C3'" ? A DA 8 ? 'WRONG HAND' . 21 6 "C3'" ? B DA 18 ? 'WRONG HAND' . 22 6 C5 ? D 2GL 1 ? 'WRONG HAND' . 23 6 C4 ? E DDA 1 ? 'WRONG HAND' . 24 6 C4 ? F DDA 1 ? 'WRONG HAND' . 25 6 "C1'" ? B CPH 23 ? PLANAR . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A CPH 33 ? O6 ? H CPH 1 O6 2 1 N 1 A CPH 33 ? O2 ? H CPH 1 O2 3 1 N 1 B CPH 23 ? O6 ? I CPH 1 O6 4 1 N 1 B CPH 23 ? O2 ? I CPH 1 O2 5 2 N 1 A CPH 33 ? O6 ? H CPH 1 O6 6 2 N 1 A CPH 33 ? O2 ? H CPH 1 O2 7 2 N 1 B CPH 23 ? O6 ? I CPH 1 O6 8 2 N 1 B CPH 23 ? O2 ? I CPH 1 O2 9 3 N 1 A CPH 33 ? O6 ? H CPH 1 O6 10 3 N 1 A CPH 33 ? O2 ? H CPH 1 O2 11 3 N 1 B CPH 23 ? O6 ? I CPH 1 O6 12 3 N 1 B CPH 23 ? O2 ? I CPH 1 O2 13 4 N 1 A CPH 33 ? O6 ? H CPH 1 O6 14 4 N 1 A CPH 33 ? O2 ? H CPH 1 O2 15 4 N 1 B CPH 23 ? O6 ? I CPH 1 O6 16 4 N 1 B CPH 23 ? O2 ? I CPH 1 O2 17 5 N 1 A CPH 33 ? O6 ? H CPH 1 O6 18 5 N 1 A CPH 33 ? O2 ? H CPH 1 O2 19 5 N 1 B CPH 23 ? O6 ? I CPH 1 O6 20 5 N 1 B CPH 23 ? O2 ? I CPH 1 O2 21 6 N 1 A CPH 33 ? O6 ? H CPH 1 O6 22 6 N 1 A CPH 33 ? O2 ? H CPH 1 O2 23 6 N 1 B CPH 23 ? O6 ? I CPH 1 O6 24 6 N 1 B CPH 23 ? O2 ? I CPH 1 O2 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1EKH 'double helix' 1EKH 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 8 1_555 0.129 -0.092 0.166 37.450 1.800 0.780 1 A_DT1:DA18_B A 1 ? B 18 ? 20 1 1 A DT 2 1_555 B DA 7 1_555 -0.124 -0.037 -0.528 5.331 -12.926 -3.144 2 A_DT2:DA17_B A 2 ? B 17 ? 20 1 1 A DG 3 1_555 B DC 6 1_555 -0.498 -0.174 0.043 -5.698 -5.686 0.814 3 A_DG3:DC16_B A 3 ? B 16 ? 19 1 1 A DG 4 1_555 B DC 5 1_555 0.074 -0.256 0.454 -2.005 -24.815 -4.783 4 A_DG4:DC15_B A 4 ? B 15 ? 19 1 1 A DC 5 1_555 B DG 4 1_555 -0.195 -0.157 0.374 5.560 -23.428 -3.867 5 A_DC5:DG14_B A 5 ? B 14 ? 19 1 1 A DC 6 1_555 B DG 3 1_555 0.303 -0.139 -0.185 7.791 -5.754 0.416 6 A_DC6:DG13_B A 6 ? B 13 ? 19 1 1 A DA 7 1_555 B DT 2 1_555 0.252 -0.063 -0.273 4.611 -13.027 -2.372 7 A_DA7:DT12_B A 7 ? B 12 ? 20 1 1 A DA 8 1_555 B DT 1 1_555 -0.156 -0.178 0.597 -41.202 4.684 8.589 8 A_DA8:DT11_B A 8 ? B 11 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 8 1_555 A DT 2 1_555 B DA 7 1_555 0.301 -0.937 4.260 14.507 26.401 32.625 -4.348 1.303 2.737 38.364 -21.081 44.126 1 AA_DT1DT2:DA17DA18_BB A 1 ? B 18 ? A 2 ? B 17 ? 1 A DT 2 1_555 B DA 7 1_555 A DG 3 1_555 B DC 6 1_555 0.706 -0.824 3.525 -5.323 13.770 28.828 -3.941 -2.219 2.696 25.645 9.912 32.317 2 AA_DT2DG3:DC16DA17_BB A 2 ? B 17 ? A 3 ? B 16 ? 1 A DG 3 1_555 B DC 6 1_555 A DG 4 1_555 B DC 5 1_555 1.091 -1.536 3.395 4.976 1.106 31.008 -3.055 -1.030 3.468 2.051 -9.229 31.414 3 AA_DG3DG4:DC15DC16_BB A 3 ? B 16 ? A 4 ? B 15 ? 1 A DG 4 1_555 B DC 5 1_555 A DC 5 1_555 B DG 4 1_555 0.029 -2.291 2.830 -0.093 2.297 29.052 -4.975 -0.074 2.645 4.569 0.185 29.141 4 AA_DG4DC5:DG14DC15_BB A 4 ? B 15 ? A 5 ? B 14 ? 1 A DC 5 1_555 B DG 4 1_555 A DC 6 1_555 B DG 3 1_555 -0.868 -1.791 3.395 -5.089 -0.988 31.094 -3.101 0.585 3.542 -1.827 9.411 31.513 5 AA_DC5DC6:DG13DG14_BB A 5 ? B 14 ? A 6 ? B 13 ? 1 A DC 6 1_555 B DG 3 1_555 A DA 7 1_555 B DT 2 1_555 -0.706 -0.448 3.719 7.418 8.576 29.072 -2.625 2.862 3.190 16.323 -14.119 31.161 6 AA_DC6DA7:DT12DG13_BB A 6 ? B 13 ? A 7 ? B 12 ? 1 A DA 7 1_555 B DT 2 1_555 A DA 8 1_555 B DT 1 1_555 -0.198 -0.092 4.596 -17.452 30.659 36.472 -3.293 -1.581 3.395 39.505 22.488 50.320 7 AA_DA7DA8:DT11DT12_BB A 7 ? B 12 ? A 8 ? B 11 ? # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 2GL 1 C 2GL 1 A 2GL 32 n C 2 1GL 2 C 1GL 2 A 1GL 31 n D 2 2GL 1 D 2GL 1 B 2GL 22 n D 2 1GL 2 D 1GL 2 B 1GL 21 n E 3 DDA 1 E DDA 1 B DDA 26 n E 3 DDA 2 E DDA 2 B DDA 25 n E 3 ERI 3 E ERI 3 B ERI 24 n F 3 DDA 1 F DDA 1 B DDA 36 n F 3 DDA 2 F DDA 2 B DDA 35 n F 3 ERI 3 F ERI 3 B ERI 34 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1GL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-2-deoxy-Fucp4OMe DDA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DOlib DDA 'COMMON NAME' GMML 1.0 b-D-Olivopyranose DDA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-2,6-deoxy-Glcp DDA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Oli # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'WURCS=2.0/2,2,1/[ad112m-1b_1-5_4*OCC/3=O][ad112m-1a_1-5_4*OC]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0 2 2 '[][b-D-2-deoxy-Fucp4Ac]{[(3+1)][a-D-2-deoxy-Fucp4Me]{}}' LINUCS PDB-CARE ? 3 3 'WURCS=2.0/2,3,2/[ad122m-1b_1-5][ad611m-1a_1-5_3*C_4*OCC/3=O]/1-1-2/a3-b1_b3-c1' WURCS PDB2Glycan 1.1.0 4 3 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2,6-deoxy-Glcp]{[(3+1)][a-L-2,6-deoxy-Glcp4Ac]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 1GL C1 O1 1 2GL O3 HO3 sing ? 2 3 2 DDA C1 O1 1 DDA O3 HO3 sing ? 3 3 3 ERI C1 O1 2 DDA O3 HO3 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 2GL 1 n 2 1GL 2 n 3 DDA 1 n 3 DDA 2 n 3 ERI 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'COBALT (II) ION' CO 5 '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' CPH #