data_1EM0 # _entry.id 1EM0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1EM0 pdb_00001em0 10.2210/pdb1em0/pdb NDB DD0027 ? ? RCSB RCSB010713 ? ? WWPDB D_1000010713 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-08-21 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' diffrn_source 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_conn_type 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.value' 7 4 'Structure model' '_struct_conn.conn_type_id' 8 4 'Structure model' '_struct_conn.id' 9 4 'Structure model' '_struct_conn.pdbx_dist_value' 10 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 11 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 12 4 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 13 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 14 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 15 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 20 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 21 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 27 4 'Structure model' '_struct_conn_type.id' 28 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 29 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 30 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EM0 _pdbx_database_status.recvd_initial_deposition_date 2000-03-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Neidle, S.' 1 'Sanderson, M.' 2 'Bennett, M.' 3 'Krah, A.' 4 'Wien, F.' 5 'Garman, E.' 6 'McKenna, R.' 7 # _citation.id primary _citation.title 'A DNA-porphyrin minor-groove complex at atomic resolution: the structural consequences of porphyrin ruffling.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 97 _citation.page_first 9476 _citation.page_last 9481 _citation.year 2000 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10920199 _citation.pdbx_database_id_DOI 10.1073/pnas.160271897 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bennett, M.' 1 ? primary 'Krah, A.' 2 ? primary 'Wien, F.' 3 ? primary 'Garman, E.' 4 ? primary 'McKenna, R.' 5 ? primary 'Sanderson, M.' 6 ? primary 'Neidle, S.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*(CBR)P*CP*TP*AP*GP*G)-3') ; 1888.113 4 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 non-polymer syn 'TETRA[N-METHYL-PYRIDYL] PORPHYRIN-NICKEL' 735.504 2 ? ? ? ? 4 water nat water 18.015 214 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(CBR)(DC)(DT)(DA)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCTAGG _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'TETRA[N-METHYL-PYRIDYL] PORPHYRIN-NICKEL' PNI 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CBR n 1 2 DC n 1 3 DT n 1 4 DA n 1 5 DG n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CBR 'DNA linking' n "5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 Br N3 O7 P' 386.093 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PNI non-polymer . 'TETRA[N-METHYL-PYRIDYL] PORPHYRIN-NICKEL' ? 'C44 H36 N8 Ni' 735.504 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CBR 1 1 1 CBR BRO A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DG 6 6 6 DG G A . n B 1 1 CBR 1 7 7 CBR BRO B . n B 1 2 DC 2 8 8 DC C B . n B 1 3 DT 3 9 9 DT T B . n B 1 4 DA 4 10 10 DA A B . n B 1 5 DG 5 11 11 DG G B . n B 1 6 DG 6 12 12 DG G B . n C 1 1 CBR 1 13 13 CBR BRO C . n C 1 2 DC 2 14 14 DC C C . n C 1 3 DT 3 15 15 DT T C . n C 1 4 DA 4 16 16 DA A C . n C 1 5 DG 5 17 17 DG G C . n C 1 6 DG 6 18 18 DG G C . n D 1 1 CBR 1 19 19 CBR BRO D . n D 1 2 DC 2 20 20 DC C D . n D 1 3 DT 3 21 21 DT T D . n D 1 4 DA 4 22 22 DA A D . n D 1 5 DG 5 23 23 DG G D . n D 1 6 DG 6 24 24 DG G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG 1 27 27 MG MO6 A . F 3 PNI 1 25 25 PNI PNI B . G 2 MG 1 28 28 MG MO6 C . H 3 PNI 1 26 26 PNI PNI D . I 4 HOH 1 506 506 HOH HOH A . I 4 HOH 2 507 507 HOH HOH A . I 4 HOH 3 511 511 HOH HOH A . I 4 HOH 4 518 518 HOH HOH A . I 4 HOH 5 521 521 HOH HOH A . I 4 HOH 6 522 522 HOH HOH A . I 4 HOH 7 524 524 HOH HOH A . I 4 HOH 8 529 529 HOH HOH A . I 4 HOH 9 530 530 HOH HOH A . I 4 HOH 10 535 535 HOH HOH A . I 4 HOH 11 538 538 HOH HOH A . I 4 HOH 12 544 544 HOH HOH A . I 4 HOH 13 548 548 HOH HOH A . I 4 HOH 14 549 549 HOH HOH A . I 4 HOH 15 552 552 HOH HOH A . I 4 HOH 16 557 557 HOH HOH A . I 4 HOH 17 569 569 HOH HOH A . I 4 HOH 18 570 570 HOH HOH A . I 4 HOH 19 571 571 HOH HOH A . I 4 HOH 20 577 577 HOH HOH A . I 4 HOH 21 579 579 HOH HOH A . I 4 HOH 22 581 581 HOH HOH A . I 4 HOH 23 583 583 HOH HOH A . I 4 HOH 24 592 592 HOH HOH A . I 4 HOH 25 595 595 HOH HOH A . I 4 HOH 26 604 604 HOH HOH A . I 4 HOH 27 607 607 HOH HOH A . I 4 HOH 28 608 608 HOH HOH A . I 4 HOH 29 611 611 HOH HOH A . I 4 HOH 30 612 612 HOH HOH A . I 4 HOH 31 614 614 HOH HOH A . I 4 HOH 32 621 621 HOH HOH A . I 4 HOH 33 624 624 HOH HOH A . I 4 HOH 34 626 626 HOH HOH A . I 4 HOH 35 629 629 HOH HOH A . I 4 HOH 36 632 632 HOH HOH A . I 4 HOH 37 634 634 HOH HOH A . I 4 HOH 38 635 635 HOH HOH A . I 4 HOH 39 636 636 HOH HOH A . I 4 HOH 40 637 637 HOH HOH A . I 4 HOH 41 638 638 HOH HOH A . I 4 HOH 42 646 646 HOH HOH A . I 4 HOH 43 649 649 HOH HOH A . I 4 HOH 44 655 655 HOH HOH A . I 4 HOH 45 659 659 HOH HOH A . I 4 HOH 46 660 660 HOH HOH A . I 4 HOH 47 662 662 HOH HOH A . I 4 HOH 48 663 663 HOH HOH A . I 4 HOH 49 667 667 HOH HOH A . I 4 HOH 50 669 669 HOH HOH A . I 4 HOH 51 673 673 HOH HOH A . I 4 HOH 52 690 690 HOH HOH A . I 4 HOH 53 691 691 HOH HOH A . I 4 HOH 54 696 696 HOH HOH A . I 4 HOH 55 701 701 HOH HOH A . I 4 HOH 56 703 27 HOH MO6 A . I 4 HOH 57 704 27 HOH MO6 A . I 4 HOH 58 705 27 HOH MO6 A . I 4 HOH 59 706 27 HOH MO6 A . I 4 HOH 60 707 27 HOH MO6 A . I 4 HOH 61 708 27 HOH MO6 A . J 4 HOH 1 501 501 HOH HOH B . J 4 HOH 2 502 502 HOH HOH B . J 4 HOH 3 508 508 HOH HOH B . J 4 HOH 4 510 510 HOH HOH B . J 4 HOH 5 515 515 HOH HOH B . J 4 HOH 6 517 517 HOH HOH B . J 4 HOH 7 527 527 HOH HOH B . J 4 HOH 8 528 528 HOH HOH B . J 4 HOH 9 536 536 HOH HOH B . J 4 HOH 10 540 540 HOH HOH B . J 4 HOH 11 541 541 HOH HOH B . J 4 HOH 12 545 545 HOH HOH B . J 4 HOH 13 556 556 HOH HOH B . J 4 HOH 14 558 558 HOH HOH B . J 4 HOH 15 563 563 HOH HOH B . J 4 HOH 16 566 566 HOH HOH B . J 4 HOH 17 567 567 HOH HOH B . J 4 HOH 18 573 573 HOH HOH B . J 4 HOH 19 575 575 HOH HOH B . J 4 HOH 20 580 580 HOH HOH B . J 4 HOH 21 582 582 HOH HOH B . J 4 HOH 22 586 586 HOH HOH B . J 4 HOH 23 589 589 HOH HOH B . J 4 HOH 24 590 590 HOH HOH B . J 4 HOH 25 591 591 HOH HOH B . J 4 HOH 26 599 599 HOH HOH B . J 4 HOH 27 601 601 HOH HOH B . J 4 HOH 28 602 602 HOH HOH B . J 4 HOH 29 606 606 HOH HOH B . J 4 HOH 30 609 609 HOH HOH B . J 4 HOH 31 619 619 HOH HOH B . J 4 HOH 32 622 622 HOH HOH B . J 4 HOH 33 630 630 HOH HOH B . J 4 HOH 34 640 640 HOH HOH B . J 4 HOH 35 642 642 HOH HOH B . J 4 HOH 36 643 643 HOH HOH B . J 4 HOH 37 644 644 HOH HOH B . J 4 HOH 38 650 650 HOH HOH B . J 4 HOH 39 651 651 HOH HOH B . J 4 HOH 40 653 653 HOH HOH B . J 4 HOH 41 658 658 HOH HOH B . J 4 HOH 42 671 671 HOH HOH B . J 4 HOH 43 676 676 HOH HOH B . J 4 HOH 44 678 678 HOH HOH B . J 4 HOH 45 679 679 HOH HOH B . J 4 HOH 46 682 682 HOH HOH B . J 4 HOH 47 684 684 HOH HOH B . J 4 HOH 48 695 695 HOH HOH B . K 4 HOH 1 505 505 HOH HOH C . K 4 HOH 2 509 509 HOH HOH C . K 4 HOH 3 519 519 HOH HOH C . K 4 HOH 4 520 520 HOH HOH C . K 4 HOH 5 523 523 HOH HOH C . K 4 HOH 6 526 526 HOH HOH C . K 4 HOH 7 531 531 HOH HOH C . K 4 HOH 8 537 537 HOH HOH C . K 4 HOH 9 539 539 HOH HOH C . K 4 HOH 10 542 542 HOH HOH C . K 4 HOH 11 543 543 HOH HOH C . K 4 HOH 12 546 546 HOH HOH C . K 4 HOH 13 550 550 HOH HOH C . K 4 HOH 14 553 553 HOH HOH C . K 4 HOH 15 560 560 HOH HOH C . K 4 HOH 16 564 564 HOH HOH C . K 4 HOH 17 565 565 HOH HOH C . K 4 HOH 18 572 572 HOH HOH C . K 4 HOH 19 574 574 HOH HOH C . K 4 HOH 20 587 587 HOH HOH C . K 4 HOH 21 593 593 HOH HOH C . K 4 HOH 22 596 596 HOH HOH C . K 4 HOH 23 598 598 HOH HOH C . K 4 HOH 24 600 600 HOH HOH C . K 4 HOH 25 610 610 HOH HOH C . K 4 HOH 26 615 615 HOH HOH C . K 4 HOH 27 620 620 HOH HOH C . K 4 HOH 28 623 623 HOH HOH C . K 4 HOH 29 625 625 HOH HOH C . K 4 HOH 30 627 627 HOH HOH C . K 4 HOH 31 628 628 HOH HOH C . K 4 HOH 32 631 631 HOH HOH C . K 4 HOH 33 633 633 HOH HOH C . K 4 HOH 34 645 645 HOH HOH C . K 4 HOH 35 654 654 HOH HOH C . K 4 HOH 36 656 656 HOH HOH C . K 4 HOH 37 657 657 HOH HOH C . K 4 HOH 38 664 664 HOH HOH C . K 4 HOH 39 665 665 HOH HOH C . K 4 HOH 40 668 668 HOH HOH C . K 4 HOH 41 674 674 HOH HOH C . K 4 HOH 42 677 677 HOH HOH C . K 4 HOH 43 686 686 HOH HOH C . K 4 HOH 44 687 687 HOH HOH C . K 4 HOH 45 688 688 HOH HOH C . K 4 HOH 46 689 689 HOH HOH C . K 4 HOH 47 692 692 HOH HOH C . K 4 HOH 48 699 699 HOH HOH C . K 4 HOH 49 702 702 HOH HOH C . K 4 HOH 50 709 28 HOH MO6 C . K 4 HOH 51 710 28 HOH MO6 C . K 4 HOH 52 711 28 HOH MO6 C . K 4 HOH 53 712 28 HOH MO6 C . K 4 HOH 54 713 28 HOH MO6 C . K 4 HOH 55 714 28 HOH MO6 C . L 4 HOH 1 503 503 HOH HOH D . L 4 HOH 2 504 504 HOH HOH D . L 4 HOH 3 512 512 HOH HOH D . L 4 HOH 4 513 513 HOH HOH D . L 4 HOH 5 514 514 HOH HOH D . L 4 HOH 6 516 516 HOH HOH D . L 4 HOH 7 525 525 HOH HOH D . L 4 HOH 8 532 532 HOH HOH D . L 4 HOH 9 533 533 HOH HOH D . L 4 HOH 10 534 534 HOH HOH D . L 4 HOH 11 547 547 HOH HOH D . L 4 HOH 12 551 551 HOH HOH D . L 4 HOH 13 554 554 HOH HOH D . L 4 HOH 14 555 555 HOH HOH D . L 4 HOH 15 559 559 HOH HOH D . L 4 HOH 16 561 561 HOH HOH D . L 4 HOH 17 562 562 HOH HOH D . L 4 HOH 18 568 568 HOH HOH D . L 4 HOH 19 576 576 HOH HOH D . L 4 HOH 20 578 578 HOH HOH D . L 4 HOH 21 584 584 HOH HOH D . L 4 HOH 22 585 585 HOH HOH D . L 4 HOH 23 588 588 HOH HOH D . L 4 HOH 24 594 594 HOH HOH D . L 4 HOH 25 597 597 HOH HOH D . L 4 HOH 26 603 603 HOH HOH D . L 4 HOH 27 605 605 HOH HOH D . L 4 HOH 28 613 613 HOH HOH D . L 4 HOH 29 616 616 HOH HOH D . L 4 HOH 30 617 617 HOH HOH D . L 4 HOH 31 618 618 HOH HOH D . L 4 HOH 32 639 639 HOH HOH D . L 4 HOH 33 641 641 HOH HOH D . L 4 HOH 34 647 647 HOH HOH D . L 4 HOH 35 648 648 HOH HOH D . L 4 HOH 36 652 652 HOH HOH D . L 4 HOH 37 661 661 HOH HOH D . L 4 HOH 38 666 666 HOH HOH D . L 4 HOH 39 670 670 HOH HOH D . L 4 HOH 40 672 672 HOH HOH D . L 4 HOH 41 675 675 HOH HOH D . L 4 HOH 42 680 680 HOH HOH D . L 4 HOH 43 681 681 HOH HOH D . L 4 HOH 44 683 683 HOH HOH D . L 4 HOH 45 685 685 HOH HOH D . L 4 HOH 46 693 693 HOH HOH D . L 4 HOH 47 694 694 HOH HOH D . L 4 HOH 48 697 697 HOH HOH D . L 4 HOH 49 698 698 HOH HOH D . L 4 HOH 50 700 700 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CCP4 'model building' 'MAD PROGS' ? 1 SHELXL-97 refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 CCP4 phasing '(MAD PROGS)' ? 5 # _cell.entry_id 1EM0 _cell.length_a 32.210 _cell.length_b 32.210 _cell.length_c 62.257 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EM0 _symmetry.space_group_name_H-M 'P 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 76 # _exptl.entry_id 1EM0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.44 _exptl_crystal.density_Matthews 2.14 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;1.25UM DNA, 1.25UM NI-PORPHYRIN, 50UM MGCL2, 5% MPD, 30MM SODIUM CACODYLATE, AGAINST 500UM RESERVOIR OF 55% MPD, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 290K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 'IMAGE PLATE' MARRESEARCH ? ? 2 'IMAGE PLATE' MARRESEARCH ? ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M ? 'SINGLE WAVELENGTH' x-ray 2 1 M ? 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9189 1.0 2 0.9057 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'ESRF BEAMLINE BM14' ESRF BM14 0.9189 ? 2 SYNCHROTRON 'EMBL/DESY, HAMBURG BEAMLINE X11' 'EMBL/DESY, HAMBURG' X11 0.9057 ? # _reflns.entry_id 1EM0 _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 4 _reflns.d_resolution_low 30. _reflns.d_resolution_high 0.86 _reflns.number_obs 45197 _reflns.number_all ? _reflns.percent_possible_obs 93 _reflns.pdbx_Rmerge_I_obs 0.021 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 0.9 _reflns_shell.d_res_low 1.0 _reflns_shell.percent_possible_all 70.3 _reflns_shell.Rmerge_I_obs 0.124 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1EM0 _refine.ls_number_reflns_obs 37075 _refine.ls_number_reflns_all 42874 _refine.pdbx_ls_sigma_I 2 _refine.pdbx_ls_sigma_F 4 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6. _refine.ls_d_res_high 0.9 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.152 _refine.ls_R_factor_all 0.151 _refine.ls_R_factor_R_work 0.152 _refine.ls_R_factor_R_free 0.172 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free 2323 _refine.ls_number_parameters 3867 _refine.ls_number_restraints 0 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'FULL-MATRIX LEAST-SQUARES' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'NO RESTRAINTS USED, THEREFORE THE RMSD DEVIATIONS ABOVE DO NOT HAVE ANY MEANING' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 772 _refine_hist.pdbx_number_atoms_ligand 196 _refine_hist.number_atoms_solvent 202 _refine_hist.number_atoms_total 1170 _refine_hist.d_res_high 0.9 _refine_hist.d_res_low 6. # _pdbx_refine.entry_id 1EM0 _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.142 _pdbx_refine.R_factor_obs_4sig_cutoff 0.142 _pdbx_refine.free_R_factor_4sig_cutoff 0.161 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.4 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1990 _pdbx_refine.number_reflns_obs_4sig_cutoff 37075 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 1EM0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1EM0 _struct.title 'COMPLEX OF D(CCTAGG) WITH TETRA-[N-METHYL-PYRIDYL] PORPHYRIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EM0 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'PORPHYRIN, RUFFLING, DNA DISTORTION, GROOVE BINDING, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 3 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1EM0 _struct_ref.pdbx_db_accession 1EM0 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1EM0 A 1 ? 6 ? 1EM0 1 ? 6 ? 1 6 2 1 1EM0 B 1 ? 6 ? 1EM0 7 ? 12 ? 7 12 3 1 1EM0 C 1 ? 6 ? 1EM0 13 ? 18 ? 13 18 4 1 1EM0 D 1 ? 6 ? 1EM0 19 ? 24 ? 19 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A CBR 1 "O3'" ? ? ? 1_555 A DC 2 P ? ? A CBR 1 A DC 2 1_555 ? ? ? ? ? ? ? 1.509 ? ? covale2 covale both ? B CBR 1 "O3'" A ? ? 1_555 B DC 2 P A ? B CBR 7 B DC 8 1_555 ? ? ? ? ? ? ? 1.490 ? ? covale3 covale both ? B CBR 1 "O3'" B ? ? 1_555 B DC 2 P B ? B CBR 7 B DC 8 1_555 ? ? ? ? ? ? ? 1.688 ? ? covale4 covale both ? C CBR 1 "O3'" ? ? ? 1_555 C DC 2 P ? ? C CBR 13 C DC 14 1_555 ? ? ? ? ? ? ? 1.488 ? ? covale5 covale both ? D CBR 1 "O3'" D ? ? 1_555 D DC 2 P D ? D CBR 19 D DC 20 1_555 ? ? ? ? ? ? ? 1.636 ? ? covale6 covale both ? D CBR 1 "O3'" C ? ? 1_555 D DC 2 P C ? D CBR 19 D DC 20 1_555 ? ? ? ? ? ? ? 1.634 ? ? metalc1 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 27 A HOH 703 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc2 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 27 A HOH 704 1_555 ? ? ? ? ? ? ? 2.013 ? ? metalc3 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 27 A HOH 705 1_555 ? ? ? ? ? ? ? 2.099 ? ? metalc4 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 27 A HOH 706 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc5 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 27 A HOH 707 1_555 ? ? ? ? ? ? ? 2.129 ? ? metalc6 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 27 A HOH 708 1_555 ? ? ? ? ? ? ? 2.122 ? ? metalc7 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? C MG 28 C HOH 709 1_555 ? ? ? ? ? ? ? 2.042 ? ? metalc8 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? C MG 28 C HOH 710 1_555 ? ? ? ? ? ? ? 2.022 ? ? metalc9 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? C MG 28 C HOH 711 1_555 ? ? ? ? ? ? ? 2.080 ? ? metalc10 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? C MG 28 C HOH 712 1_555 ? ? ? ? ? ? ? 2.146 ? ? metalc11 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? C MG 28 C HOH 713 1_555 ? ? ? ? ? ? ? 2.026 ? ? metalc12 metalc ? ? G MG . MG ? ? ? 1_555 K HOH . O ? ? C MG 28 C HOH 714 1_555 ? ? ? ? ? ? ? 2.115 ? ? hydrog1 hydrog ? ? A CBR 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A CBR 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A CBR 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A CBR 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A CBR 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A CBR 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 5 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 5 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 5 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B CBR 1 N3 ? ? A DG 6 B CBR 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B CBR 1 O2 ? ? A DG 6 B CBR 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B CBR 1 N4 ? ? A DG 6 B CBR 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C CBR 1 N3 ? ? ? 1_555 D DG 6 N1 ? ? C CBR 13 D DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C CBR 1 N4 ? ? ? 1_555 D DG 6 O6 ? ? C CBR 13 D DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C CBR 1 O2 ? ? ? 1_555 D DG 6 N2 ? ? C CBR 13 D DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 5 N1 ? ? C DC 14 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 5 O6 ? ? C DC 14 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 5 N2 ? ? C DC 14 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DT 3 N3 ? ? ? 1_555 D DA 4 N1 ? ? C DT 15 D DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DT 3 O4 ? ? ? 1_555 D DA 4 N6 ? ? C DT 15 D DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 3 N3 ? ? C DA 16 D DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 3 O4 ? ? C DA 16 D DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? I HOH . ? A HOH 703 ? 1_555 MG ? E MG . ? A MG 27 ? 1_555 O ? I HOH . ? A HOH 704 ? 1_555 178.6 ? 2 O ? I HOH . ? A HOH 703 ? 1_555 MG ? E MG . ? A MG 27 ? 1_555 O ? I HOH . ? A HOH 705 ? 1_555 88.9 ? 3 O ? I HOH . ? A HOH 704 ? 1_555 MG ? E MG . ? A MG 27 ? 1_555 O ? I HOH . ? A HOH 705 ? 1_555 89.9 ? 4 O ? I HOH . ? A HOH 703 ? 1_555 MG ? E MG . ? A MG 27 ? 1_555 O ? I HOH . ? A HOH 706 ? 1_555 87.7 ? 5 O ? I HOH . ? A HOH 704 ? 1_555 MG ? E MG . ? A MG 27 ? 1_555 O ? I HOH . ? A HOH 706 ? 1_555 93.6 ? 6 O ? I HOH . ? A HOH 705 ? 1_555 MG ? E MG . ? A MG 27 ? 1_555 O ? I HOH . ? A HOH 706 ? 1_555 176.5 ? 7 O ? I HOH . ? A HOH 703 ? 1_555 MG ? E MG . ? A MG 27 ? 1_555 O ? I HOH . ? A HOH 707 ? 1_555 90.7 ? 8 O ? I HOH . ? A HOH 704 ? 1_555 MG ? E MG . ? A MG 27 ? 1_555 O ? I HOH . ? A HOH 707 ? 1_555 89.8 ? 9 O ? I HOH . ? A HOH 705 ? 1_555 MG ? E MG . ? A MG 27 ? 1_555 O ? I HOH . ? A HOH 707 ? 1_555 88.2 ? 10 O ? I HOH . ? A HOH 706 ? 1_555 MG ? E MG . ? A MG 27 ? 1_555 O ? I HOH . ? A HOH 707 ? 1_555 91.1 ? 11 O ? I HOH . ? A HOH 703 ? 1_555 MG ? E MG . ? A MG 27 ? 1_555 O ? I HOH . ? A HOH 708 ? 1_555 91.7 ? 12 O ? I HOH . ? A HOH 704 ? 1_555 MG ? E MG . ? A MG 27 ? 1_555 O ? I HOH . ? A HOH 708 ? 1_555 87.6 ? 13 O ? I HOH . ? A HOH 705 ? 1_555 MG ? E MG . ? A MG 27 ? 1_555 O ? I HOH . ? A HOH 708 ? 1_555 84.9 ? 14 O ? I HOH . ? A HOH 706 ? 1_555 MG ? E MG . ? A MG 27 ? 1_555 O ? I HOH . ? A HOH 708 ? 1_555 95.9 ? 15 O ? I HOH . ? A HOH 707 ? 1_555 MG ? E MG . ? A MG 27 ? 1_555 O ? I HOH . ? A HOH 708 ? 1_555 172.7 ? 16 O ? K HOH . ? C HOH 709 ? 1_555 MG ? G MG . ? C MG 28 ? 1_555 O ? K HOH . ? C HOH 710 ? 1_555 178.2 ? 17 O ? K HOH . ? C HOH 709 ? 1_555 MG ? G MG . ? C MG 28 ? 1_555 O ? K HOH . ? C HOH 711 ? 1_555 92.4 ? 18 O ? K HOH . ? C HOH 710 ? 1_555 MG ? G MG . ? C MG 28 ? 1_555 O ? K HOH . ? C HOH 711 ? 1_555 89.0 ? 19 O ? K HOH . ? C HOH 709 ? 1_555 MG ? G MG . ? C MG 28 ? 1_555 O ? K HOH . ? C HOH 712 ? 1_555 91.0 ? 20 O ? K HOH . ? C HOH 710 ? 1_555 MG ? G MG . ? C MG 28 ? 1_555 O ? K HOH . ? C HOH 712 ? 1_555 87.4 ? 21 O ? K HOH . ? C HOH 711 ? 1_555 MG ? G MG . ? C MG 28 ? 1_555 O ? K HOH . ? C HOH 712 ? 1_555 171.5 ? 22 O ? K HOH . ? C HOH 709 ? 1_555 MG ? G MG . ? C MG 28 ? 1_555 O ? K HOH . ? C HOH 713 ? 1_555 85.7 ? 23 O ? K HOH . ? C HOH 710 ? 1_555 MG ? G MG . ? C MG 28 ? 1_555 O ? K HOH . ? C HOH 713 ? 1_555 95.5 ? 24 O ? K HOH . ? C HOH 711 ? 1_555 MG ? G MG . ? C MG 28 ? 1_555 O ? K HOH . ? C HOH 713 ? 1_555 91.1 ? 25 O ? K HOH . ? C HOH 712 ? 1_555 MG ? G MG . ? C MG 28 ? 1_555 O ? K HOH . ? C HOH 713 ? 1_555 97.0 ? 26 O ? K HOH . ? C HOH 709 ? 1_555 MG ? G MG . ? C MG 28 ? 1_555 O ? K HOH . ? C HOH 714 ? 1_555 88.4 ? 27 O ? K HOH . ? C HOH 710 ? 1_555 MG ? G MG . ? C MG 28 ? 1_555 O ? K HOH . ? C HOH 714 ? 1_555 90.5 ? 28 O ? K HOH . ? C HOH 711 ? 1_555 MG ? G MG . ? C MG 28 ? 1_555 O ? K HOH . ? C HOH 714 ? 1_555 87.7 ? 29 O ? K HOH . ? C HOH 712 ? 1_555 MG ? G MG . ? C MG 28 ? 1_555 O ? K HOH . ? C HOH 714 ? 1_555 84.6 ? 30 O ? K HOH . ? C HOH 713 ? 1_555 MG ? G MG . ? C MG 28 ? 1_555 O ? K HOH . ? C HOH 714 ? 1_555 173.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 27 ? 6 'BINDING SITE FOR RESIDUE MG A 27' AC2 Software C MG 28 ? 6 'BINDING SITE FOR RESIDUE MG C 28' AC3 Software B PNI 25 ? 16 'BINDING SITE FOR RESIDUE PNI B 25' AC4 Software D PNI 26 ? 13 'BINDING SITE FOR RESIDUE PNI D 26' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH I . ? HOH A 703 . ? 1_555 ? 2 AC1 6 HOH I . ? HOH A 704 . ? 1_555 ? 3 AC1 6 HOH I . ? HOH A 705 . ? 1_555 ? 4 AC1 6 HOH I . ? HOH A 706 . ? 1_555 ? 5 AC1 6 HOH I . ? HOH A 707 . ? 1_555 ? 6 AC1 6 HOH I . ? HOH A 708 . ? 1_555 ? 7 AC2 6 HOH K . ? HOH C 709 . ? 1_555 ? 8 AC2 6 HOH K . ? HOH C 710 . ? 1_555 ? 9 AC2 6 HOH K . ? HOH C 711 . ? 1_555 ? 10 AC2 6 HOH K . ? HOH C 712 . ? 1_555 ? 11 AC2 6 HOH K . ? HOH C 713 . ? 1_555 ? 12 AC2 6 HOH K . ? HOH C 714 . ? 1_555 ? 13 AC3 16 DC A 2 ? DC A 2 . ? 4_564 ? 14 AC3 16 DT A 3 ? DT A 3 . ? 4_564 ? 15 AC3 16 DA A 4 ? DA A 4 . ? 4_564 ? 16 AC3 16 DG A 5 ? DG A 5 . ? 4_564 ? 17 AC3 16 DG A 6 ? DG A 6 . ? 1_555 ? 18 AC3 16 DG A 6 ? DG A 6 . ? 4_564 ? 19 AC3 16 HOH I . ? HOH A 662 . ? 4_564 ? 20 AC3 16 CBR B 1 ? CBR B 7 . ? 1_555 ? 21 AC3 16 DC B 2 ? DC B 8 . ? 1_555 ? 22 AC3 16 DT B 3 ? DT B 9 . ? 4_564 ? 23 AC3 16 DA B 4 ? DA B 10 . ? 4_564 ? 24 AC3 16 DG B 6 ? DG B 12 . ? 4_564 ? 25 AC3 16 CBR C 1 ? CBR C 13 . ? 4_564 ? 26 AC3 16 DA D 4 ? DA D 22 . ? 2_654 ? 27 AC3 16 HOH L . ? HOH D 555 . ? 2_654 ? 28 AC3 16 HOH L . ? HOH D 605 . ? 2_654 ? 29 AC4 13 CBR A 1 ? CBR A 1 . ? 3_555 ? 30 AC4 13 DA B 4 ? DA B 10 . ? 2_655 ? 31 AC4 13 DC C 2 ? DC C 14 . ? 3_555 ? 32 AC4 13 DT C 3 ? DT C 15 . ? 3_555 ? 33 AC4 13 DA C 4 ? DA C 16 . ? 3_555 ? 34 AC4 13 DG C 5 ? DG C 17 . ? 3_555 ? 35 AC4 13 DG C 6 ? DG C 18 . ? 1_555 ? 36 AC4 13 DG C 6 ? DG C 18 . ? 3_555 ? 37 AC4 13 CBR D 1 ? CBR D 19 . ? 1_555 ? 38 AC4 13 DC D 2 ? DC D 20 . ? 1_555 ? 39 AC4 13 DT D 3 ? DT D 21 . ? 3_555 ? 40 AC4 13 DA D 4 ? DA D 22 . ? 3_555 ? 41 AC4 13 DG D 6 ? DG D 24 . ? 3_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 650 ? ? O D HOH 551 ? ? 1.49 2 1 O B HOH 556 ? ? O B HOH 606 ? ? 1.85 3 1 O B HOH 650 ? ? O D HOH 514 ? ? 1.99 4 1 O D HOH 584 ? ? O D HOH 685 ? ? 2.03 5 1 OP2 D DG 23 ? ? O D HOH 693 ? ? 2.08 6 1 O B HOH 556 ? ? O B HOH 695 ? ? 2.14 7 1 O A HOH 690 ? ? O A HOH 696 ? ? 2.16 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O B HOH 679 ? ? 1_555 O B HOH 682 ? ? 3_655 2.09 2 1 O A HOH 662 ? ? 1_555 O B HOH 609 ? ? 3_655 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A CBR 1 ? ? P A DC 2 ? ? 1.509 1.607 -0.098 0.012 Y 2 1 "C5'" A DC 2 ? ? "C4'" A DC 2 ? ? 1.441 1.509 -0.068 0.011 N 3 1 N3 A DC 2 ? ? C4 A DC 2 ? ? 1.283 1.335 -0.052 0.007 N 4 1 "C5'" A DT 3 ? ? "C4'" A DT 3 ? ? 1.430 1.509 -0.079 0.011 N 5 1 C5 A DT 3 ? ? C7 A DT 3 ? ? 1.535 1.496 0.039 0.006 N 6 1 "C2'" A DA 4 ? ? "C1'" A DA 4 ? ? 1.580 1.519 0.061 0.010 N 7 1 C5 A DA 4 ? ? N7 A DA 4 ? ? 1.336 1.388 -0.052 0.006 N 8 1 N9 A DA 4 ? ? C4 A DA 4 ? ? 1.334 1.374 -0.040 0.006 N 9 1 N1 A DG 5 ? ? C2 A DG 5 ? ? 1.464 1.373 0.091 0.008 N 10 1 N3 A DG 5 ? ? C4 A DG 5 ? ? 1.247 1.350 -0.103 0.007 N 11 1 C4 A DG 5 ? ? C5 A DG 5 ? ? 1.429 1.379 0.050 0.007 N 12 1 N7 A DG 5 ? ? C8 A DG 5 ? ? 1.268 1.305 -0.037 0.006 N 13 1 N9 A DG 5 ? ? C4 A DG 5 ? ? 1.460 1.375 0.085 0.008 N 14 1 "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 1.174 1.521 -0.347 0.010 N 15 1 "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? 1.642 1.518 0.124 0.012 N 16 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? 1.504 1.420 0.084 0.011 N 17 1 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? 1.544 1.449 0.095 0.009 N 18 1 "O3'" A DG 6 ? ? "C3'" A DG 6 ? ? 1.582 1.435 0.147 0.013 N 19 1 C2 A DG 6 ? ? N3 A DG 6 ? ? 1.394 1.323 0.071 0.008 N 20 1 N3 A DG 6 ? ? C4 A DG 6 ? ? 1.283 1.350 -0.067 0.007 N 21 1 C6 A DG 6 ? ? N1 A DG 6 ? ? 1.343 1.391 -0.048 0.007 N 22 1 N9 A DG 6 ? ? C4 A DG 6 ? ? 1.441 1.375 0.066 0.008 N 23 1 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.271 1.341 -0.070 0.010 N 24 1 "O3'" B CBR 7 ? A P B DC 8 ? A 1.490 1.607 -0.117 0.012 Y 25 1 "O3'" B CBR 7 ? B P B DC 8 ? B 1.688 1.607 0.081 0.012 Y 26 1 P B DC 8 ? A OP1 B DC 8 ? A 1.316 1.485 -0.169 0.017 N 27 1 P B DC 8 ? A OP2 B DC 8 ? A 1.625 1.485 0.140 0.017 N 28 1 P B DC 8 ? B "O5'" B DC 8 ? B 1.478 1.593 -0.115 0.010 N 29 1 "O5'" B DC 8 ? A "C5'" B DC 8 ? A 1.243 1.418 -0.175 0.025 N 30 1 "C5'" B DC 8 ? A "C4'" B DC 8 ? ? 1.127 1.509 -0.382 0.011 N 31 1 "C5'" B DC 8 ? B "C4'" B DC 8 ? ? 1.735 1.512 0.223 0.007 N 32 1 "O3'" B DC 8 ? ? "C3'" B DC 8 ? ? 1.329 1.419 -0.090 0.006 N 33 1 C2 B DC 8 ? ? O2 B DC 8 ? ? 1.171 1.240 -0.069 0.009 N 34 1 N3 B DC 8 ? ? C4 B DC 8 ? ? 1.377 1.335 0.042 0.007 N 35 1 P B DT 9 ? ? OP2 B DT 9 ? ? 1.381 1.485 -0.104 0.017 N 36 1 "C5'" B DT 9 ? ? "C4'" B DT 9 ? ? 1.555 1.512 0.043 0.007 N 37 1 "C3'" B DT 9 ? ? "C2'" B DT 9 ? ? 1.417 1.516 -0.099 0.008 N 38 1 C6 B DT 9 ? ? N1 B DT 9 ? ? 1.335 1.378 -0.043 0.007 N 39 1 C2 B DT 9 ? ? O2 B DT 9 ? ? 1.167 1.220 -0.053 0.008 N 40 1 "C5'" B DA 10 ? ? "C4'" B DA 10 ? ? 1.440 1.509 -0.069 0.011 N 41 1 C4 B DA 10 ? ? C5 B DA 10 ? ? 1.323 1.383 -0.060 0.007 N 42 1 N7 B DA 10 ? ? C8 B DA 10 ? ? 1.264 1.311 -0.047 0.007 N 43 1 N3 B DG 11 ? ? C4 B DG 11 ? ? 1.427 1.350 0.077 0.007 N 44 1 N7 B DG 11 ? ? C8 B DG 11 ? ? 1.255 1.305 -0.050 0.006 N 45 1 N1 B DG 12 ? ? C2 B DG 12 ? ? 1.446 1.373 0.073 0.008 N 46 1 C6 B DG 12 ? ? N1 B DG 12 ? ? 1.339 1.391 -0.052 0.007 N 47 1 C5 B DG 12 ? ? N7 B DG 12 ? ? 1.429 1.388 0.041 0.006 N 48 1 "O3'" C CBR 13 ? ? P C DC 14 ? ? 1.488 1.607 -0.119 0.012 Y 49 1 P C DC 14 ? ? OP2 C DC 14 ? ? 1.619 1.485 0.134 0.017 N 50 1 "C5'" C DC 14 ? ? "C4'" C DC 14 ? ? 1.431 1.509 -0.078 0.011 N 51 1 "C2'" C DC 14 ? ? "C1'" C DC 14 ? ? 1.458 1.518 -0.060 0.010 N 52 1 N3 C DC 14 ? ? C4 C DC 14 ? ? 1.292 1.335 -0.043 0.007 N 53 1 "C5'" C DT 15 ? ? "C4'" C DT 15 ? ? 1.441 1.509 -0.068 0.011 N 54 1 "O3'" C DA 16 ? ? "C3'" C DA 16 ? ? 1.377 1.419 -0.042 0.006 N 55 1 C5 C DA 16 ? ? N7 C DA 16 ? ? 1.345 1.388 -0.043 0.006 N 56 1 N1 C DG 17 ? ? C2 C DG 17 ? ? 1.445 1.373 0.072 0.008 N 57 1 C2 C DG 17 ? ? N3 C DG 17 ? ? 1.260 1.323 -0.063 0.008 N 58 1 N7 C DG 17 ? ? C8 C DG 17 ? ? 1.260 1.305 -0.045 0.006 N 59 1 "O5'" C DG 18 ? ? "C5'" C DG 18 ? ? 1.602 1.440 0.162 0.016 N 60 1 "C5'" C DG 18 ? ? "C4'" C DG 18 ? ? 1.663 1.512 0.151 0.007 N 61 1 "C4'" C DG 18 ? ? "C3'" C DG 18 ? ? 1.211 1.521 -0.310 0.010 N 62 1 "C2'" C DG 18 ? ? "C1'" C DG 18 ? ? 1.793 1.519 0.274 0.010 N 63 1 N3 C DG 18 ? ? C4 C DG 18 ? ? 1.272 1.350 -0.078 0.007 N 64 1 C4 C DG 18 ? ? C5 C DG 18 ? ? 1.438 1.379 0.059 0.007 N 65 1 C6 C DG 18 ? ? N1 C DG 18 ? ? 1.317 1.391 -0.074 0.007 N 66 1 C8 C DG 18 ? ? N9 C DG 18 ? ? 1.269 1.374 -0.105 0.007 N 67 1 N9 C DG 18 ? ? C4 C DG 18 ? ? 1.441 1.375 0.066 0.008 N 68 1 C2 C DG 18 ? ? N2 C DG 18 ? ? 1.262 1.341 -0.079 0.010 N 69 1 P D DC 20 ? C OP2 D DC 20 ? C 1.591 1.485 0.106 0.017 N 70 1 "O5'" D DC 20 ? C "C5'" D DC 20 ? C 1.582 1.440 0.142 0.016 N 71 1 "C5'" D DC 20 ? C "C4'" D DC 20 ? ? 1.029 1.509 -0.480 0.011 N 72 1 "C5'" D DC 20 ? D "C4'" D DC 20 ? ? 1.679 1.512 0.167 0.007 N 73 1 "C2'" D DC 20 ? ? "C1'" D DC 20 ? ? 1.430 1.518 -0.088 0.010 N 74 1 "O3'" D DC 20 ? ? "C3'" D DC 20 ? ? 1.359 1.419 -0.060 0.006 N 75 1 C2 D DC 20 ? ? O2 D DC 20 ? ? 1.180 1.240 -0.060 0.009 N 76 1 C2 D DC 20 ? ? N3 D DC 20 ? ? 1.441 1.353 0.088 0.008 N 77 1 P D DT 21 ? ? OP2 D DT 21 ? ? 1.362 1.485 -0.123 0.017 N 78 1 "C5'" D DT 21 ? ? "C4'" D DT 21 ? ? 1.585 1.512 0.073 0.007 N 79 1 "C4'" D DT 21 ? ? "C3'" D DT 21 ? ? 1.424 1.521 -0.097 0.010 N 80 1 "O4'" D DT 21 ? ? "C4'" D DT 21 ? ? 1.510 1.449 0.061 0.009 N 81 1 C5 D DT 21 ? ? C6 D DT 21 ? ? 1.399 1.339 0.060 0.007 N 82 1 C6 D DT 21 ? ? N1 D DT 21 ? ? 1.333 1.378 -0.045 0.007 N 83 1 C2 D DT 21 ? ? O2 D DT 21 ? ? 1.170 1.220 -0.050 0.008 N 84 1 C2 D DA 22 ? ? N3 D DA 22 ? ? 1.393 1.331 0.062 0.009 N 85 1 C4 D DA 22 ? ? C5 D DA 22 ? ? 1.335 1.383 -0.048 0.007 N 86 1 C5 D DA 22 ? ? C6 D DA 22 ? ? 1.467 1.406 0.061 0.009 N 87 1 N7 D DA 22 ? ? C8 D DA 22 ? ? 1.238 1.311 -0.073 0.007 N 88 1 N3 D DG 23 ? ? C4 D DG 23 ? ? 1.394 1.350 0.044 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A CBR 1 ? ? "O3'" A CBR 1 ? ? P A DC 2 ? ? 129.83 119.70 10.13 1.20 Y 2 1 C6 A DG 5 ? ? N1 A DG 5 ? ? C2 A DG 5 ? ? 119.98 125.10 -5.12 0.60 N 3 1 N3 A DG 5 ? ? C4 A DG 5 ? ? C5 A DG 5 ? ? 133.56 128.60 4.96 0.50 N 4 1 C4 A DG 5 ? ? C5 A DG 5 ? ? C6 A DG 5 ? ? 113.75 118.80 -5.05 0.60 N 5 1 C5 A DG 5 ? ? C6 A DG 5 ? ? N1 A DG 5 ? ? 116.48 111.50 4.98 0.50 N 6 1 N9 A DG 5 ? ? C4 A DG 5 ? ? C5 A DG 5 ? ? 100.81 105.40 -4.59 0.40 N 7 1 C5 A DG 5 ? ? C6 A DG 5 ? ? O6 A DG 5 ? ? 124.86 128.60 -3.74 0.60 N 8 1 "C1'" A DG 6 ? ? "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? 103.35 110.10 -6.75 1.00 N 9 1 "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? "O3'" A DG 6 ? ? 124.33 112.30 12.03 2.00 N 10 1 "C2'" A DG 6 ? ? "C3'" A DG 6 ? ? "O3'" A DG 6 ? ? 92.23 109.40 -17.17 2.50 N 11 1 "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? 119.46 103.10 16.36 0.90 N 12 1 "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? "C1'" A DG 6 ? ? 92.47 102.40 -9.93 0.80 N 13 1 N9 A DG 6 ? ? "C1'" A DG 6 ? ? "C2'" A DG 6 ? ? 127.18 114.30 12.88 1.40 N 14 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 102.65 108.00 -5.35 0.70 N 15 1 C6 A DG 6 ? ? N1 A DG 6 ? ? C2 A DG 6 ? ? 130.53 125.10 5.43 0.60 N 16 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N3 A DG 6 ? ? 118.50 123.90 -5.40 0.60 N 17 1 N9 A DG 6 ? ? C4 A DG 6 ? ? C5 A DG 6 ? ? 102.65 105.40 -2.75 0.40 N 18 1 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 123.70 119.90 3.80 0.60 N 19 1 "C3'" B CBR 7 ? A "O3'" B CBR 7 ? A P B DC 8 ? A 135.46 119.70 15.76 1.20 Y 20 1 "C3'" B CBR 7 ? B "O3'" B CBR 7 ? B P B DC 8 ? B 110.70 119.70 -9.00 1.20 Y 21 1 P B DC 8 ? A "O5'" B DC 8 ? A "C5'" B DC 8 ? A 134.60 120.90 13.70 1.60 N 22 1 "C5'" B DC 8 ? A "C4'" B DC 8 ? ? "C3'" B DC 8 ? ? 123.16 115.70 7.46 1.20 N 23 1 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? "C2'" B DC 8 ? ? 109.95 106.80 3.15 0.50 N 24 1 C6 B DC 8 ? ? N1 B DC 8 ? ? C2 B DC 8 ? ? 122.93 120.30 2.63 0.40 N 25 1 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? N1 B DT 9 ? ? 111.05 108.30 2.75 0.30 N 26 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.48 108.30 3.18 0.30 N 27 1 C8 B DG 11 ? ? N9 B DG 11 ? ? C4 B DG 11 ? ? 102.71 106.40 -3.69 0.40 N 28 1 N9 B DG 11 ? ? C4 B DG 11 ? ? C5 B DG 11 ? ? 108.92 105.40 3.52 0.40 N 29 1 "C3'" C CBR 13 ? ? "O3'" C CBR 13 ? ? P C DC 14 ? ? 128.97 119.70 9.27 1.20 Y 30 1 "C1'" C DC 14 ? ? "O4'" C DC 14 ? ? "C4'" C DC 14 ? ? 103.67 110.10 -6.43 1.00 N 31 1 "O4'" C DC 14 ? ? "C1'" C DC 14 ? ? N1 C DC 14 ? ? 103.45 108.00 -4.55 0.70 N 32 1 N1 C DC 14 ? ? C2 C DC 14 ? ? N3 C DC 14 ? ? 114.89 119.20 -4.31 0.70 N 33 1 C2 C DA 16 ? ? N3 C DA 16 ? ? C4 C DA 16 ? ? 107.12 110.60 -3.48 0.50 N 34 1 C6 C DG 17 ? ? N1 C DG 17 ? ? C2 C DG 17 ? ? 120.53 125.10 -4.57 0.60 N 35 1 C5 C DG 17 ? ? C6 C DG 17 ? ? N1 C DG 17 ? ? 114.83 111.50 3.33 0.50 N 36 1 C5 C DG 17 ? ? C6 C DG 17 ? ? O6 C DG 17 ? ? 123.85 128.60 -4.75 0.60 N 37 1 "O5'" C DG 18 ? ? "C5'" C DG 18 ? ? "C4'" C DG 18 ? ? 102.98 109.40 -6.42 0.80 N 38 1 P C DG 18 ? ? "O5'" C DG 18 ? ? "C5'" C DG 18 ? ? 110.78 120.90 -10.12 1.60 N 39 1 "O4'" C DG 18 ? ? "C4'" C DG 18 ? ? "C3'" C DG 18 ? ? 110.01 106.00 4.01 0.60 N 40 1 "C4'" C DG 18 ? ? "C3'" C DG 18 ? ? "C2'" C DG 18 ? ? 113.62 103.10 10.52 0.90 N 41 1 "C3'" C DG 18 ? ? "C2'" C DG 18 ? ? "C1'" C DG 18 ? ? 91.81 102.40 -10.59 0.80 N 42 1 "O4'" C DG 18 ? ? "C1'" C DG 18 ? ? "C2'" C DG 18 ? ? 89.98 105.90 -15.92 0.80 N 43 1 N9 C DG 18 ? ? "C1'" C DG 18 ? ? "C2'" C DG 18 ? ? 124.90 114.30 10.60 1.40 N 44 1 "O4'" C DG 18 ? ? "C1'" C DG 18 ? ? N9 C DG 18 ? ? 102.62 108.00 -5.38 0.70 N 45 1 C6 C DG 18 ? ? N1 C DG 18 ? ? C2 C DG 18 ? ? 131.00 125.10 5.90 0.60 N 46 1 N1 C DG 18 ? ? C2 C DG 18 ? ? N3 C DG 18 ? ? 118.98 123.90 -4.92 0.60 N 47 1 C5 C DG 18 ? ? N7 C DG 18 ? ? C8 C DG 18 ? ? 107.65 104.30 3.35 0.50 N 48 1 C8 C DG 18 ? ? N9 C DG 18 ? ? C4 C DG 18 ? ? 110.63 106.40 4.23 0.40 N 49 1 N9 C DG 18 ? ? C4 C DG 18 ? ? C5 C DG 18 ? ? 99.99 105.40 -5.41 0.40 N 50 1 N3 C DG 18 ? ? C4 C DG 18 ? ? N9 C DG 18 ? ? 131.10 126.00 5.10 0.60 N 51 1 N1 C DG 18 ? ? C6 C DG 18 ? ? O6 C DG 18 ? ? 125.85 119.90 5.95 0.60 N 52 1 C5 C DG 18 ? ? C6 C DG 18 ? ? O6 C DG 18 ? ? 123.66 128.60 -4.94 0.60 N 53 1 C4 C DG 18 ? ? N9 C DG 18 ? ? "C1'" C DG 18 ? ? 115.98 126.50 -10.52 1.30 N 54 1 "C3'" D CBR 19 ? C "O3'" D CBR 19 ? C P D DC 20 ? C 131.87 119.70 12.17 1.20 Y 55 1 P D DC 20 ? C "O5'" D DC 20 ? C "C5'" D DC 20 ? C 132.41 120.90 11.51 1.60 N 56 1 "C5'" D DC 20 ? C "C4'" D DC 20 ? ? "C3'" D DC 20 ? ? 126.14 115.70 10.44 1.20 N 57 1 C6 D DC 20 ? ? N1 D DC 20 ? ? C2 D DC 20 ? ? 124.34 120.30 4.04 0.40 N 58 1 C4 D DC 20 ? ? C5 D DC 20 ? ? C6 D DC 20 ? ? 121.37 117.40 3.97 0.50 N 59 1 N1 D DC 20 ? ? C2 D DC 20 ? ? O2 D DC 20 ? ? 122.73 118.90 3.83 0.60 N 60 1 "C1'" D DT 21 ? ? "O4'" D DT 21 ? ? "C4'" D DT 21 ? ? 103.57 110.10 -6.53 1.00 N 61 1 "C3'" D DT 21 ? ? "C2'" D DT 21 ? ? "C1'" D DT 21 ? ? 96.31 102.40 -6.09 0.80 N 62 1 C4 D DT 21 ? ? C5 D DT 21 ? ? C6 D DT 21 ? ? 113.75 118.00 -4.25 0.60 N 63 1 C6 D DG 23 ? ? N1 D DG 23 ? ? C2 D DG 23 ? ? 129.38 125.10 4.28 0.60 N 64 1 C2 D DG 24 ? ? N3 D DG 24 ? ? C4 D DG 24 ? ? 115.15 111.90 3.25 0.50 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 2 ? ? 0.113 'SIDE CHAIN' 2 1 DA A 4 ? ? 0.056 'SIDE CHAIN' 3 1 DG A 5 ? ? 0.068 'SIDE CHAIN' 4 1 DA B 10 ? ? 0.067 'SIDE CHAIN' 5 1 DG B 12 ? ? 0.089 'SIDE CHAIN' 6 1 DC C 14 ? ? 0.098 'SIDE CHAIN' 7 1 DG C 17 ? ? 0.069 'SIDE CHAIN' 8 1 DA D 22 ? ? 0.077 'SIDE CHAIN' 9 1 DG D 24 ? ? 0.083 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CBR 1 A CBR 1 ? DC ? 2 B CBR 1 B CBR 7 ? DC ? 3 C CBR 1 C CBR 13 ? DC ? 4 D CBR 1 D CBR 19 ? DC ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MINOR GROOVE BINDER' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CBR BR BR N N 1 CBR P P N N 2 CBR OP1 O N N 3 CBR OP2 O N N 4 CBR "O5'" O N N 5 CBR N1 N N N 6 CBR C6 C N N 7 CBR C2 C N N 8 CBR O2 O N N 9 CBR N3 N N N 10 CBR C4 C N N 11 CBR N4 N N N 12 CBR C5 C N N 13 CBR "C2'" C N N 14 CBR "C5'" C N N 15 CBR "C4'" C N R 16 CBR "O4'" O N N 17 CBR "C1'" C N R 18 CBR "C3'" C N S 19 CBR "O3'" O N N 20 CBR OP3 O N N 21 CBR HOP2 H N N 22 CBR H6 H N N 23 CBR H41 H N N 24 CBR H42 H N N 25 CBR "H2'" H N N 26 CBR "H2''" H N N 27 CBR "H5'" H N N 28 CBR "H5''" H N N 29 CBR "H4'" H N N 30 CBR "H1'" H N N 31 CBR "H3'" H N N 32 CBR "HO3'" H N N 33 CBR HOP3 H N N 34 DA OP3 O N N 35 DA P P N N 36 DA OP1 O N N 37 DA OP2 O N N 38 DA "O5'" O N N 39 DA "C5'" C N N 40 DA "C4'" C N R 41 DA "O4'" O N N 42 DA "C3'" C N S 43 DA "O3'" O N N 44 DA "C2'" C N N 45 DA "C1'" C N R 46 DA N9 N Y N 47 DA C8 C Y N 48 DA N7 N Y N 49 DA C5 C Y N 50 DA C6 C Y N 51 DA N6 N N N 52 DA N1 N Y N 53 DA C2 C Y N 54 DA N3 N Y N 55 DA C4 C Y N 56 DA HOP3 H N N 57 DA HOP2 H N N 58 DA "H5'" H N N 59 DA "H5''" H N N 60 DA "H4'" H N N 61 DA "H3'" H N N 62 DA "HO3'" H N N 63 DA "H2'" H N N 64 DA "H2''" H N N 65 DA "H1'" H N N 66 DA H8 H N N 67 DA H61 H N N 68 DA H62 H N N 69 DA H2 H N N 70 DC OP3 O N N 71 DC P P N N 72 DC OP1 O N N 73 DC OP2 O N N 74 DC "O5'" O N N 75 DC "C5'" C N N 76 DC "C4'" C N R 77 DC "O4'" O N N 78 DC "C3'" C N S 79 DC "O3'" O N N 80 DC "C2'" C N N 81 DC "C1'" C N R 82 DC N1 N N N 83 DC C2 C N N 84 DC O2 O N N 85 DC N3 N N N 86 DC C4 C N N 87 DC N4 N N N 88 DC C5 C N N 89 DC C6 C N N 90 DC HOP3 H N N 91 DC HOP2 H N N 92 DC "H5'" H N N 93 DC "H5''" H N N 94 DC "H4'" H N N 95 DC "H3'" H N N 96 DC "HO3'" H N N 97 DC "H2'" H N N 98 DC "H2''" H N N 99 DC "H1'" H N N 100 DC H41 H N N 101 DC H42 H N N 102 DC H5 H N N 103 DC H6 H N N 104 DG OP3 O N N 105 DG P P N N 106 DG OP1 O N N 107 DG OP2 O N N 108 DG "O5'" O N N 109 DG "C5'" C N N 110 DG "C4'" C N R 111 DG "O4'" O N N 112 DG "C3'" C N S 113 DG "O3'" O N N 114 DG "C2'" C N N 115 DG "C1'" C N R 116 DG N9 N Y N 117 DG C8 C Y N 118 DG N7 N Y N 119 DG C5 C Y N 120 DG C6 C N N 121 DG O6 O N N 122 DG N1 N N N 123 DG C2 C N N 124 DG N2 N N N 125 DG N3 N N N 126 DG C4 C Y N 127 DG HOP3 H N N 128 DG HOP2 H N N 129 DG "H5'" H N N 130 DG "H5''" H N N 131 DG "H4'" H N N 132 DG "H3'" H N N 133 DG "HO3'" H N N 134 DG "H2'" H N N 135 DG "H2''" H N N 136 DG "H1'" H N N 137 DG H8 H N N 138 DG H1 H N N 139 DG H21 H N N 140 DG H22 H N N 141 DT OP3 O N N 142 DT P P N N 143 DT OP1 O N N 144 DT OP2 O N N 145 DT "O5'" O N N 146 DT "C5'" C N N 147 DT "C4'" C N R 148 DT "O4'" O N N 149 DT "C3'" C N S 150 DT "O3'" O N N 151 DT "C2'" C N N 152 DT "C1'" C N R 153 DT N1 N N N 154 DT C2 C N N 155 DT O2 O N N 156 DT N3 N N N 157 DT C4 C N N 158 DT O4 O N N 159 DT C5 C N N 160 DT C7 C N N 161 DT C6 C N N 162 DT HOP3 H N N 163 DT HOP2 H N N 164 DT "H5'" H N N 165 DT "H5''" H N N 166 DT "H4'" H N N 167 DT "H3'" H N N 168 DT "HO3'" H N N 169 DT "H2'" H N N 170 DT "H2''" H N N 171 DT "H1'" H N N 172 DT H3 H N N 173 DT H71 H N N 174 DT H72 H N N 175 DT H73 H N N 176 DT H6 H N N 177 HOH O O N N 178 HOH H1 H N N 179 HOH H2 H N N 180 MG MG MG N N 181 PNI NI NI N N 182 PNI NA N Y N 183 PNI C1A C Y N 184 PNI C2A C Y N 185 PNI C3A C Y N 186 PNI C4A C Y N 187 PNI C5A C N N 188 PNI C6A C N N 189 PNI C7A C N N 190 PNI C8A C N N 191 PNI NPA N N N 192 PNI C9A C N N 193 PNI C0A C N N 194 PNI CMA C N N 195 PNI NB N Y N 196 PNI C1B C Y N 197 PNI C2B C Y N 198 PNI C3B C Y N 199 PNI C4B C Y N 200 PNI C5B C N N 201 PNI C6B C N N 202 PNI C7B C N N 203 PNI C8B C N N 204 PNI NPB N N N 205 PNI C9B C N N 206 PNI C0B C N N 207 PNI CMB C N N 208 PNI NC N Y N 209 PNI C1C C Y N 210 PNI C2C C Y N 211 PNI C3C C Y N 212 PNI C4C C Y N 213 PNI C5C C N N 214 PNI C6C C N N 215 PNI C7C C N N 216 PNI C8C C N N 217 PNI NPC N N N 218 PNI C9C C N N 219 PNI C0C C N N 220 PNI CMC C N N 221 PNI ND N Y N 222 PNI C1D C Y N 223 PNI C2D C Y N 224 PNI C3D C Y N 225 PNI C4D C Y N 226 PNI C5D C N N 227 PNI C6D C N N 228 PNI C7D C N N 229 PNI C8D C N N 230 PNI C9D C N N 231 PNI C0D C N N 232 PNI CMD C N N 233 PNI NPD N N N 234 PNI H2A H N N 235 PNI H3A H N N 236 PNI H7A H N N 237 PNI H8A H N N 238 PNI H9A H N N 239 PNI H0A H N N 240 PNI HMA1 H N N 241 PNI HMA2 H N N 242 PNI HMA3 H N N 243 PNI H2B H N N 244 PNI H3B H N N 245 PNI H7B H N N 246 PNI H8B H N N 247 PNI H9B H N N 248 PNI H0B H N N 249 PNI HMB1 H N N 250 PNI HMB2 H N N 251 PNI HMB3 H N N 252 PNI H2C H N N 253 PNI H3C H N N 254 PNI H7C H N N 255 PNI H8C H N N 256 PNI H9C H N N 257 PNI H0C H N N 258 PNI HMC1 H N N 259 PNI HMC2 H N N 260 PNI HMC3 H N N 261 PNI H2D H N N 262 PNI H3D H N N 263 PNI H7D H N N 264 PNI H8D H N N 265 PNI H9D H N N 266 PNI H0D H N N 267 PNI HMD1 H N N 268 PNI HMD2 H N N 269 PNI HMD3 H N N 270 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CBR BR C5 sing N N 1 CBR P OP1 doub N N 2 CBR P OP2 sing N N 3 CBR P "O5'" sing N N 4 CBR P OP3 sing N N 5 CBR OP2 HOP2 sing N N 6 CBR "O5'" "C5'" sing N N 7 CBR N1 C6 sing N N 8 CBR N1 C2 sing N N 9 CBR N1 "C1'" sing N N 10 CBR C6 C5 doub N N 11 CBR C6 H6 sing N N 12 CBR C2 O2 doub N N 13 CBR C2 N3 sing N N 14 CBR N3 C4 doub N N 15 CBR C4 N4 sing N N 16 CBR C4 C5 sing N N 17 CBR N4 H41 sing N N 18 CBR N4 H42 sing N N 19 CBR "C2'" "C1'" sing N N 20 CBR "C2'" "C3'" sing N N 21 CBR "C2'" "H2'" sing N N 22 CBR "C2'" "H2''" sing N N 23 CBR "C5'" "C4'" sing N N 24 CBR "C5'" "H5'" sing N N 25 CBR "C5'" "H5''" sing N N 26 CBR "C4'" "O4'" sing N N 27 CBR "C4'" "C3'" sing N N 28 CBR "C4'" "H4'" sing N N 29 CBR "O4'" "C1'" sing N N 30 CBR "C1'" "H1'" sing N N 31 CBR "C3'" "O3'" sing N N 32 CBR "C3'" "H3'" sing N N 33 CBR "O3'" "HO3'" sing N N 34 CBR OP3 HOP3 sing N N 35 DA OP3 P sing N N 36 DA OP3 HOP3 sing N N 37 DA P OP1 doub N N 38 DA P OP2 sing N N 39 DA P "O5'" sing N N 40 DA OP2 HOP2 sing N N 41 DA "O5'" "C5'" sing N N 42 DA "C5'" "C4'" sing N N 43 DA "C5'" "H5'" sing N N 44 DA "C5'" "H5''" sing N N 45 DA "C4'" "O4'" sing N N 46 DA "C4'" "C3'" sing N N 47 DA "C4'" "H4'" sing N N 48 DA "O4'" "C1'" sing N N 49 DA "C3'" "O3'" sing N N 50 DA "C3'" "C2'" sing N N 51 DA "C3'" "H3'" sing N N 52 DA "O3'" "HO3'" sing N N 53 DA "C2'" "C1'" sing N N 54 DA "C2'" "H2'" sing N N 55 DA "C2'" "H2''" sing N N 56 DA "C1'" N9 sing N N 57 DA "C1'" "H1'" sing N N 58 DA N9 C8 sing Y N 59 DA N9 C4 sing Y N 60 DA C8 N7 doub Y N 61 DA C8 H8 sing N N 62 DA N7 C5 sing Y N 63 DA C5 C6 sing Y N 64 DA C5 C4 doub Y N 65 DA C6 N6 sing N N 66 DA C6 N1 doub Y N 67 DA N6 H61 sing N N 68 DA N6 H62 sing N N 69 DA N1 C2 sing Y N 70 DA C2 N3 doub Y N 71 DA C2 H2 sing N N 72 DA N3 C4 sing Y N 73 DC OP3 P sing N N 74 DC OP3 HOP3 sing N N 75 DC P OP1 doub N N 76 DC P OP2 sing N N 77 DC P "O5'" sing N N 78 DC OP2 HOP2 sing N N 79 DC "O5'" "C5'" sing N N 80 DC "C5'" "C4'" sing N N 81 DC "C5'" "H5'" sing N N 82 DC "C5'" "H5''" sing N N 83 DC "C4'" "O4'" sing N N 84 DC "C4'" "C3'" sing N N 85 DC "C4'" "H4'" sing N N 86 DC "O4'" "C1'" sing N N 87 DC "C3'" "O3'" sing N N 88 DC "C3'" "C2'" sing N N 89 DC "C3'" "H3'" sing N N 90 DC "O3'" "HO3'" sing N N 91 DC "C2'" "C1'" sing N N 92 DC "C2'" "H2'" sing N N 93 DC "C2'" "H2''" sing N N 94 DC "C1'" N1 sing N N 95 DC "C1'" "H1'" sing N N 96 DC N1 C2 sing N N 97 DC N1 C6 sing N N 98 DC C2 O2 doub N N 99 DC C2 N3 sing N N 100 DC N3 C4 doub N N 101 DC C4 N4 sing N N 102 DC C4 C5 sing N N 103 DC N4 H41 sing N N 104 DC N4 H42 sing N N 105 DC C5 C6 doub N N 106 DC C5 H5 sing N N 107 DC C6 H6 sing N N 108 DG OP3 P sing N N 109 DG OP3 HOP3 sing N N 110 DG P OP1 doub N N 111 DG P OP2 sing N N 112 DG P "O5'" sing N N 113 DG OP2 HOP2 sing N N 114 DG "O5'" "C5'" sing N N 115 DG "C5'" "C4'" sing N N 116 DG "C5'" "H5'" sing N N 117 DG "C5'" "H5''" sing N N 118 DG "C4'" "O4'" sing N N 119 DG "C4'" "C3'" sing N N 120 DG "C4'" "H4'" sing N N 121 DG "O4'" "C1'" sing N N 122 DG "C3'" "O3'" sing N N 123 DG "C3'" "C2'" sing N N 124 DG "C3'" "H3'" sing N N 125 DG "O3'" "HO3'" sing N N 126 DG "C2'" "C1'" sing N N 127 DG "C2'" "H2'" sing N N 128 DG "C2'" "H2''" sing N N 129 DG "C1'" N9 sing N N 130 DG "C1'" "H1'" sing N N 131 DG N9 C8 sing Y N 132 DG N9 C4 sing Y N 133 DG C8 N7 doub Y N 134 DG C8 H8 sing N N 135 DG N7 C5 sing Y N 136 DG C5 C6 sing N N 137 DG C5 C4 doub Y N 138 DG C6 O6 doub N N 139 DG C6 N1 sing N N 140 DG N1 C2 sing N N 141 DG N1 H1 sing N N 142 DG C2 N2 sing N N 143 DG C2 N3 doub N N 144 DG N2 H21 sing N N 145 DG N2 H22 sing N N 146 DG N3 C4 sing N N 147 DT OP3 P sing N N 148 DT OP3 HOP3 sing N N 149 DT P OP1 doub N N 150 DT P OP2 sing N N 151 DT P "O5'" sing N N 152 DT OP2 HOP2 sing N N 153 DT "O5'" "C5'" sing N N 154 DT "C5'" "C4'" sing N N 155 DT "C5'" "H5'" sing N N 156 DT "C5'" "H5''" sing N N 157 DT "C4'" "O4'" sing N N 158 DT "C4'" "C3'" sing N N 159 DT "C4'" "H4'" sing N N 160 DT "O4'" "C1'" sing N N 161 DT "C3'" "O3'" sing N N 162 DT "C3'" "C2'" sing N N 163 DT "C3'" "H3'" sing N N 164 DT "O3'" "HO3'" sing N N 165 DT "C2'" "C1'" sing N N 166 DT "C2'" "H2'" sing N N 167 DT "C2'" "H2''" sing N N 168 DT "C1'" N1 sing N N 169 DT "C1'" "H1'" sing N N 170 DT N1 C2 sing N N 171 DT N1 C6 sing N N 172 DT C2 O2 doub N N 173 DT C2 N3 sing N N 174 DT N3 C4 sing N N 175 DT N3 H3 sing N N 176 DT C4 O4 doub N N 177 DT C4 C5 sing N N 178 DT C5 C7 sing N N 179 DT C5 C6 doub N N 180 DT C7 H71 sing N N 181 DT C7 H72 sing N N 182 DT C7 H73 sing N N 183 DT C6 H6 sing N N 184 HOH O H1 sing N N 185 HOH O H2 sing N N 186 PNI NI NA sing N N 187 PNI NI NB sing N N 188 PNI NI NC sing N N 189 PNI NI ND sing N N 190 PNI NA C1A sing Y N 191 PNI NA C4A sing Y N 192 PNI C1A C2A doub Y N 193 PNI C1A C5D sing N N 194 PNI C2A C3A sing Y N 195 PNI C2A H2A sing N N 196 PNI C3A C4A doub Y N 197 PNI C3A H3A sing N N 198 PNI C4A C5A sing N N 199 PNI C5A C6A doub N N 200 PNI C5A C1B sing N N 201 PNI C6A C7A sing N N 202 PNI C6A C0A sing N N 203 PNI C7A C8A doub N N 204 PNI C7A H7A sing N N 205 PNI C8A NPA sing N N 206 PNI C8A H8A sing N N 207 PNI NPA C9A sing N N 208 PNI NPA CMA sing N N 209 PNI C9A C0A doub N N 210 PNI C9A H9A sing N N 211 PNI C0A H0A sing N N 212 PNI CMA HMA1 sing N N 213 PNI CMA HMA2 sing N N 214 PNI CMA HMA3 sing N N 215 PNI NB C1B sing Y N 216 PNI NB C4B sing Y N 217 PNI C1B C2B doub Y N 218 PNI C2B C3B sing Y N 219 PNI C2B H2B sing N N 220 PNI C3B C4B doub Y N 221 PNI C3B H3B sing N N 222 PNI C4B C5B sing N N 223 PNI C5B C6B doub N N 224 PNI C5B C1C sing N N 225 PNI C6B C7B sing N N 226 PNI C6B C0B sing N N 227 PNI C7B C8B doub N N 228 PNI C7B H7B sing N N 229 PNI C8B NPB sing N N 230 PNI C8B H8B sing N N 231 PNI NPB C9B sing N N 232 PNI NPB CMB sing N N 233 PNI C9B C0B doub N N 234 PNI C9B H9B sing N N 235 PNI C0B H0B sing N N 236 PNI CMB HMB1 sing N N 237 PNI CMB HMB2 sing N N 238 PNI CMB HMB3 sing N N 239 PNI NC C1C sing Y N 240 PNI NC C4C sing Y N 241 PNI C1C C2C doub Y N 242 PNI C2C C3C sing Y N 243 PNI C2C H2C sing N N 244 PNI C3C C4C doub Y N 245 PNI C3C H3C sing N N 246 PNI C4C C5C sing N N 247 PNI C5C C6C doub N N 248 PNI C5C C1D sing N N 249 PNI C6C C7C sing N N 250 PNI C6C C0C sing N N 251 PNI C7C C8C doub N N 252 PNI C7C H7C sing N N 253 PNI C8C NPC sing N N 254 PNI C8C H8C sing N N 255 PNI NPC C9C sing N N 256 PNI NPC CMC sing N N 257 PNI C9C C0C doub N N 258 PNI C9C H9C sing N N 259 PNI C0C H0C sing N N 260 PNI CMC HMC1 sing N N 261 PNI CMC HMC2 sing N N 262 PNI CMC HMC3 sing N N 263 PNI ND C1D sing Y N 264 PNI ND C4D sing Y N 265 PNI C1D C2D doub Y N 266 PNI C2D C3D sing Y N 267 PNI C2D H2D sing N N 268 PNI C3D C4D doub Y N 269 PNI C3D H3D sing N N 270 PNI C4D C5D sing N N 271 PNI C5D C6D doub N N 272 PNI C6D C7D sing N N 273 PNI C6D C0D sing N N 274 PNI C7D C8D doub N N 275 PNI C7D H7D sing N N 276 PNI C8D NPD sing N N 277 PNI C8D H8D sing N N 278 PNI C9D C0D doub N N 279 PNI C9D NPD sing N N 280 PNI C9D H9D sing N N 281 PNI C0D H0D sing N N 282 PNI CMD NPD sing N N 283 PNI CMD HMD1 sing N N 284 PNI CMD HMD2 sing N N 285 PNI CMD HMD3 sing N N 286 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1EM0 'double helix' 1EM0 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B CBR 1 1_555 A DG 6 1_555 0.267 -0.196 -0.029 -16.632 20.648 -4.531 1 B_CBR7:DG6_A B 7 ? A 6 ? 19 1 1 B DC 2 1_555 A DG 5 1_555 0.265 -0.158 0.303 -10.615 -7.370 -2.919 2 B_DC8:DG5_A B 8 ? A 5 ? 19 1 1 B DT 3 1_555 A DA 4 1_555 -0.011 -0.085 -0.109 1.049 -1.189 10.087 3 B_DT9:DA4_A B 9 ? A 4 ? 20 1 1 B DA 4 1_555 A DT 3 1_555 0.121 -0.032 -0.040 0.010 -5.953 0.226 4 B_DA10:DT3_A B 10 ? A 3 ? 20 1 1 B DG 5 1_555 A DC 2 1_555 -0.103 -0.102 0.210 11.952 -2.662 -0.076 5 B_DG11:DC2_A B 11 ? A 2 ? 19 1 1 B DG 6 1_555 A CBR 1 1_555 -0.206 -0.133 0.125 4.002 -5.716 -1.459 6 B_DG12:CBR1_A B 12 ? A 1 ? 19 1 1 C CBR 1 1_555 D DG 6 1_555 0.178 -0.132 0.142 -4.105 -5.729 -1.447 7 C_CBR13:DG24_D C 13 ? D 24 ? 19 1 1 C DC 2 1_555 D DG 5 1_555 0.116 -0.104 0.201 -11.622 -3.028 0.046 8 C_DC14:DG23_D C 14 ? D 23 ? 19 1 1 C DT 3 1_555 D DA 4 1_555 -0.101 -0.036 -0.108 0.906 -6.905 0.965 9 C_DT15:DA22_D C 15 ? D 22 ? 20 1 1 C DA 4 1_555 D DT 3 1_555 0.040 -0.088 -0.117 -0.794 -0.759 9.852 10 C_DA16:DT21_D C 16 ? D 21 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B CBR 1 1_555 A DG 6 1_555 B DC 2 1_555 A DG 5 1_555 -1.031 -0.230 3.567 0.938 -14.610 27.844 2.616 2.100 3.247 -28.040 -1.799 31.391 1 BB_CBR7DC8:DG5DG6_AA B 7 ? A 6 ? B 8 ? A 5 ? 1 B DC 2 1_555 A DG 5 1_555 B DT 3 1_555 A DA 4 1_555 1.596 0.212 3.303 4.688 14.827 30.201 -2.176 -1.935 3.258 26.373 -8.339 33.886 2 BB_DC8DT9:DA4DG5_AA B 8 ? A 5 ? B 9 ? A 4 ? 1 B DT 3 1_555 A DA 4 1_555 B DA 4 1_555 A DT 3 1_555 -1.081 1.372 3.484 0.777 -5.301 45.885 2.221 1.447 3.296 -6.772 -0.993 46.180 3 BB_DT9DA10:DT3DA4_AA B 9 ? A 4 ? B 10 ? A 3 ? 1 B DA 4 1_555 A DT 3 1_555 B DG 5 1_555 A DC 2 1_555 0.276 0.756 3.149 -2.058 4.952 19.987 -0.024 -1.653 3.196 13.945 5.795 20.687 4 BB_DA10DG11:DC2DT3_AA B 10 ? A 3 ? B 11 ? A 2 ? 1 B DG 5 1_555 A DC 2 1_555 B DG 6 1_555 A CBR 1 1_555 -0.954 0.581 3.608 -1.831 0.219 42.764 0.772 1.104 3.646 0.300 2.509 42.802 5 BB_DG11DG12:CBR1DC2_AA B 11 ? A 2 ? B 12 ? A 1 ? 1 B DG 6 1_555 A CBR 1 1_555 C CBR 1 1_555 D DG 6 1_555 -0.011 -1.191 3.608 -0.147 -1.316 45.345 -1.416 -0.001 3.639 -1.706 0.190 45.364 6 BC_DG12CBR13:DG24CBR1_DA B 12 ? A 1 ? C 13 ? D 24 ? 1 C CBR 1 1_555 D DG 6 1_555 C DC 2 1_555 D DG 5 1_555 0.952 0.583 3.590 1.753 -0.181 42.931 0.815 -1.109 3.622 -0.247 -2.394 42.965 7 CC_CBR13DC14:DG23DG24_DD C 13 ? D 24 ? C 14 ? D 23 ? 1 C DC 2 1_555 D DG 5 1_555 C DT 3 1_555 D DA 4 1_555 -0.240 0.787 3.124 2.857 4.373 20.123 0.339 1.867 3.157 12.251 -8.002 20.783 8 CC_DC14DT15:DA22DG23_DD C 14 ? D 23 ? C 15 ? D 22 ? 1 C DT 3 1_555 D DA 4 1_555 C DA 4 1_555 D DT 3 1_555 1.089 1.377 3.490 -1.081 -4.281 45.844 2.145 -1.490 3.331 -5.481 1.383 46.044 9 CC_DT15DA16:DT21DA22_DD C 15 ? D 22 ? C 16 ? D 21 ? # _atom_sites.entry_id 1EM0 _atom_sites.fract_transf_matrix[1][1] 0.030941 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030941 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016088 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol BR C H MG N NI O P # loop_