HEADER LUMINESCENCE 31-MAR-97 1EMC TITLE GREEN FLUORESCENT PROTEIN FROM AEQUOREA VICTORIA, MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: GFP; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_TAXID: 6100; SOURCE 4 ORGAN: PHOTOGENIC ORGAN; SOURCE 5 TISSUE: CIRCUMORAL RING CANAL; SOURCE 6 GENE: GFP; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_VECTOR: PET11A; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PFRED11; SOURCE 14 EXPRESSION_SYSTEM_GENE: SG11 KEYWDS FLUORESCENT PROTEIN, BETA-BARREL, BIOLUMINESCENCE, LUMINESCENCE EXPDTA X-RAY DIFFRACTION AUTHOR G.PALM,A.ZDANOV,A.WLODAWER REVDAT 8 15-NOV-23 1EMC 1 REMARK LINK ATOM REVDAT 7 09-AUG-23 1EMC 1 REMARK REVDAT 6 03-NOV-21 1EMC 1 SEQADV LINK REVDAT 5 21-JAN-15 1EMC 1 HET HETATM HETNAM LINK REVDAT 5 2 1 MODRES SEQRES REVDAT 4 16-JUL-14 1EMC 1 HETNAM REMARK VERSN REVDAT 3 12-MAY-09 1EMC 1 SEQADV REVDAT 2 24-FEB-09 1EMC 1 VERSN REVDAT 1 20-AUG-97 1EMC 0 JRNL AUTH G.J.PALM,A.ZDANOV,G.A.GAITANARIS,R.STAUBER,G.N.PAVLAKIS, JRNL AUTH 2 A.WLODAWER JRNL TITL THE STRUCTURAL BASIS FOR SPECTRAL VARIATIONS IN GREEN JRNL TITL 2 FLUORESCENT PROTEIN. JRNL REF NAT.STRUCT.BIOL. V. 4 361 1997 JRNL REFN ISSN 1072-8368 JRNL PMID 9145105 JRNL DOI 10.1038/NSB0597-361 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 72.5 REMARK 3 NUMBER OF REFLECTIONS : 31013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2211 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 46.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2319 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.14 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 167 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7180 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 158 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 1.984 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 28.53 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.670 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.610 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.760 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.610 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.760 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : RESTRAINTS REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : 0.1069; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : 3.57 ; 2.00 REMARK 3 GROUP 2 POSITIONAL (A) : 0.2472; NULL REMARK 3 GROUP 2 B-FACTOR (A**2) : 5.31 ; 4.00 REMARK 3 GROUP 3 POSITIONAL (A) : 0.3118; NULL REMARK 3 GROUP 3 B-FACTOR (A**2) : 4.56 ; 6.00 REMARK 3 GROUP 4 POSITIONAL (A) : 0.3899; NULL REMARK 3 GROUP 4 B-FACTOR (A**2) : 4.53 ; 6.00 REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PAR_CSY.PRO REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOP_CSY.PRO REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PARAMETERS FOR THE CHROMOPHORE WERE REMARK 3 ESTIMATED ACCORDING TO A MODEL COMPOUND (B.TINANT ET AL., CRYST. REMARK 3 STRUCT. COMM., 1980, 9, 671-674). ATOMS CA, CB, OG1, AND CG2 OF REMARK 3 THR ? 203 ? WERE REFINED IN TWO ALTERNATE CONFORMATIONS. REMARK 4 REMARK 4 1EMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-95 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 7.0-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31013 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.5 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.25300 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: PDB ENTRY 1EMA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED BY HANGING REMARK 280 DROP METHOD. PROTEIN SOLUTION: 14 MG/ML IN 20 MM KPO4, PH 7.0 REMARK 280 WELL SOLUTION: 60% MPD, 50MM TRISCL, PH 8.0 PROTEIN:WELL 1:1, REMARK 280 VAPOR DIFFUSION - HANGING DROP, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 HIS A 231 REMARK 465 GLY A 232 REMARK 465 MET A 233 REMARK 465 ASP A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 236 REMARK 465 TYR A 237 REMARK 465 ASN A 238 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 HIS B 231 REMARK 465 GLY B 232 REMARK 465 MET B 233 REMARK 465 ASP B 234 REMARK 465 GLU B 235 REMARK 465 LEU B 236 REMARK 465 TYR B 237 REMARK 465 ASN B 238 REMARK 465 MET C 0 REMARK 465 ALA C 1 REMARK 465 SER C 2 REMARK 465 LYS C 3 REMARK 465 GLY C 232 REMARK 465 MET C 233 REMARK 465 ASP C 234 REMARK 465 GLU C 235 REMARK 465 LEU C 236 REMARK 465 TYR C 237 REMARK 465 ASN C 238 REMARK 465 MET D 0 REMARK 465 ALA D 1 REMARK 465 SER D 2 REMARK 465 LYS D 3 REMARK 465 HIS D 231 REMARK 465 GLY D 232 REMARK 465 MET D 233 REMARK 465 ASP D 234 REMARK 465 GLU D 235 REMARK 465 LEU D 236 REMARK 465 TYR D 237 REMARK 465 ASN D 238 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 ARG B 122 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 6 CG CD OE1 OE2 REMARK 470 GLU D 6 CG CD OE1 OE2 REMARK 470 ARG D 122 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C LEU D 64 N1 GYS D 66 1.32 REMARK 500 C LEU B 64 N1 GYS B 66 1.32 REMARK 500 C LEU C 64 N1 GYS C 66 1.33 REMARK 500 C LEU A 64 N1 GYS A 66 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU D 32 N ASP D 76 2646 1.91 REMARK 500 OD1 ASP D 117 O HOH D 260 2646 2.06 REMARK 500 NZ LYS B 101 NZ LYS C 131 1564 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR B 97 N - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 LEU C 194 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 HIS C 231 N - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 69 2.74 -62.85 REMARK 500 SER A 175 -169.68 -79.36 REMARK 500 HIS A 199 -178.04 -171.74 REMARK 500 GLN B 69 2.41 -61.16 REMARK 500 PRO B 75 155.96 -49.17 REMARK 500 ASP B 129 31.77 71.13 REMARK 500 ILE B 136 -74.35 -70.71 REMARK 500 ASP B 155 78.58 -120.00 REMARK 500 GLN C 69 6.43 -67.55 REMARK 500 HIS C 199 -174.68 -171.62 REMARK 500 GLN D 69 4.21 -65.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 151 0.07 SIDE CHAIN REMARK 500 TYR B 39 0.07 SIDE CHAIN REMARK 500 TYR B 182 0.09 SIDE CHAIN REMARK 500 TYR C 145 0.08 SIDE CHAIN REMARK 500 TYR D 39 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 GYS: [(4Z)-2-[(1R)-1-AMINO-2-HYDROXYETHYL]-4-(4-HYDROXYBENZYLIDENE)- REMARK 600 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID. THE CHROMOPHORE IS REMARK 600 PART OF THE PEPTIDE CHAIN BETWEEN RESIDUES 64 AND 68. DBREF 1EMC A 2 237 UNP P42212 GFP_AEQVI 2 237 DBREF 1EMC B 2 237 UNP P42212 GFP_AEQVI 2 237 DBREF 1EMC C 2 237 UNP P42212 GFP_AEQVI 2 237 DBREF 1EMC D 2 237 UNP P42212 GFP_AEQVI 2 237 SEQADV 1EMC LEU A 64 UNP P42212 PHE 64 ENGINEERED MUTATION SEQADV 1EMC GYS A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 1EMC GYS A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 1EMC GYS A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 1EMC ARG A 80 UNP P42212 GLN 80 CONFLICT SEQADV 1EMC THR A 167 UNP P42212 ILE 167 ENGINEERED MUTATION SEQADV 1EMC LEU B 64 UNP P42212 PHE 64 ENGINEERED MUTATION SEQADV 1EMC GYS B 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 1EMC GYS B 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 1EMC GYS B 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 1EMC ARG B 80 UNP P42212 GLN 80 CONFLICT SEQADV 1EMC THR B 167 UNP P42212 ILE 167 ENGINEERED MUTATION SEQADV 1EMC LEU C 64 UNP P42212 PHE 64 ENGINEERED MUTATION SEQADV 1EMC GYS C 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 1EMC GYS C 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 1EMC GYS C 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 1EMC ARG C 80 UNP P42212 GLN 80 CONFLICT SEQADV 1EMC THR C 167 UNP P42212 ILE 167 ENGINEERED MUTATION SEQADV 1EMC LEU D 64 UNP P42212 PHE 64 ENGINEERED MUTATION SEQADV 1EMC GYS D 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 1EMC GYS D 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 1EMC GYS D 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 1EMC ARG D 80 UNP P42212 GLN 80 CONFLICT SEQADV 1EMC THR D 167 UNP P42212 ILE 167 ENGINEERED MUTATION SEQRES 1 A 237 MET ALA SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL SEQRES 2 A 237 PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS SEQRES 3 A 237 LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR SEQRES 4 A 237 TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY SEQRES 5 A 237 LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU SEQRES 6 A 237 GYS VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS SEQRES 7 A 237 ARG HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR SEQRES 8 A 237 VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN SEQRES 9 A 237 TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR SEQRES 10 A 237 LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS SEQRES 11 A 237 GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SEQRES 12 A 237 TYR ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN SEQRES 13 A 237 LYS ASN GLY ILE LYS VAL ASN PHE LYS THR ARG HIS ASN SEQRES 14 A 237 ILE GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN SEQRES 15 A 237 GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO SEQRES 16 A 237 ASP ASN HIS TYR LEU SER THR GLN SER ALA LEU SER LYS SEQRES 17 A 237 ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU SEQRES 18 A 237 PHE VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU SEQRES 19 A 237 LEU TYR ASN SEQRES 1 B 237 MET ALA SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL SEQRES 2 B 237 PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS SEQRES 3 B 237 LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR SEQRES 4 B 237 TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY SEQRES 5 B 237 LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU SEQRES 6 B 237 GYS VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS SEQRES 7 B 237 ARG HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR SEQRES 8 B 237 VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN SEQRES 9 B 237 TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR SEQRES 10 B 237 LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS SEQRES 11 B 237 GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SEQRES 12 B 237 TYR ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN SEQRES 13 B 237 LYS ASN GLY ILE LYS VAL ASN PHE LYS THR ARG HIS ASN SEQRES 14 B 237 ILE GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN SEQRES 15 B 237 GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO SEQRES 16 B 237 ASP ASN HIS TYR LEU SER THR GLN SER ALA LEU SER LYS SEQRES 17 B 237 ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU SEQRES 18 B 237 PHE VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU SEQRES 19 B 237 LEU TYR ASN SEQRES 1 C 237 MET ALA SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL SEQRES 2 C 237 PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS SEQRES 3 C 237 LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR SEQRES 4 C 237 TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY SEQRES 5 C 237 LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU SEQRES 6 C 237 GYS VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS SEQRES 7 C 237 ARG HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR SEQRES 8 C 237 VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN SEQRES 9 C 237 TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR SEQRES 10 C 237 LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS SEQRES 11 C 237 GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SEQRES 12 C 237 TYR ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN SEQRES 13 C 237 LYS ASN GLY ILE LYS VAL ASN PHE LYS THR ARG HIS ASN SEQRES 14 C 237 ILE GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN SEQRES 15 C 237 GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO SEQRES 16 C 237 ASP ASN HIS TYR LEU SER THR GLN SER ALA LEU SER LYS SEQRES 17 C 237 ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU SEQRES 18 C 237 PHE VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU SEQRES 19 C 237 LEU TYR ASN SEQRES 1 D 237 MET ALA SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL SEQRES 2 D 237 PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS SEQRES 3 D 237 LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR SEQRES 4 D 237 TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY SEQRES 5 D 237 LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU SEQRES 6 D 237 GYS VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS SEQRES 7 D 237 ARG HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR SEQRES 8 D 237 VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN SEQRES 9 D 237 TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR SEQRES 10 D 237 LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS SEQRES 11 D 237 GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SEQRES 12 D 237 TYR ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN SEQRES 13 D 237 LYS ASN GLY ILE LYS VAL ASN PHE LYS THR ARG HIS ASN SEQRES 14 D 237 ILE GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN SEQRES 15 D 237 GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO SEQRES 16 D 237 ASP ASN HIS TYR LEU SER THR GLN SER ALA LEU SER LYS SEQRES 17 D 237 ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU SEQRES 18 D 237 PHE VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU SEQRES 19 D 237 LEU TYR ASN MODRES 1EMC GYS A 66 SER MODRES 1EMC GYS A 66 TYR MODRES 1EMC GYS A 66 GLY MODRES 1EMC GYS B 66 SER MODRES 1EMC GYS B 66 TYR MODRES 1EMC GYS B 66 GLY MODRES 1EMC GYS C 66 SER MODRES 1EMC GYS C 66 TYR MODRES 1EMC GYS C 66 GLY MODRES 1EMC GYS D 66 SER MODRES 1EMC GYS D 66 TYR MODRES 1EMC GYS D 66 GLY HET GYS A 66 21 HET GYS B 66 21 HET GYS C 66 21 HET GYS D 66 21 HETNAM GYS [(4Z)-2-(1-AMINO-2-HYDROXYETHYL)-4-(4- HETNAM 2 GYS HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 GYS YL]ACETIC ACID HETSYN GYS CHROMOPHORE (SER-TYR-GLY) FORMUL 1 GYS 4(C14 H15 N3 O5) FORMUL 5 HOH *158(H2 O) HELIX 1 1 GLU A 5 LEU A 7 5 3 HELIX 2 2 ALA A 37 TYR A 39 5 3 HELIX 3 3 TRP A 57 THR A 59 5 3 HELIX 4 4 GLN A 69 PHE A 71 5 3 HELIX 5 5 ASP A 76 HIS A 81 5 6 HELIX 6 6 PHE A 83 ALA A 87 1 5 HELIX 7 7 GLU B 5 LEU B 7 5 3 HELIX 8 8 ALA B 37 TYR B 39 5 3 HELIX 9 9 TRP B 57 THR B 59 5 3 HELIX 10 10 GLN B 69 PHE B 71 5 3 HELIX 11 11 ASP B 76 HIS B 81 5 6 HELIX 12 12 PHE B 83 SER B 86 1 4 HELIX 13 13 TRP C 57 THR C 59 5 3 HELIX 14 14 GLN C 69 PHE C 71 5 3 HELIX 15 15 LYS C 79 HIS C 81 5 3 HELIX 16 16 PHE C 83 SER C 86 1 4 HELIX 17 17 TRP D 57 THR D 59 5 3 HELIX 18 18 GLN D 69 PHE D 71 5 3 HELIX 19 19 ASP D 76 HIS D 81 5 6 HELIX 20 20 PHE D 83 SER D 86 1 4 SHEET 1 A12 HIS A 25 ASP A 36 0 SHEET 2 A12 VAL A 11 VAL A 22 -1 N VAL A 22 O HIS A 25 SHEET 3 A12 THR A 118 ILE A 128 1 N LEU A 119 O LEU A 15 SHEET 4 A12 ASN A 105 GLU A 115 -1 N GLU A 115 O THR A 118 SHEET 5 A12 TYR A 92 PHE A 100 -1 N ILE A 98 O TYR A 106 SHEET 6 A12 VAL A 176 PRO A 187 -1 N THR A 186 O VAL A 93 SHEET 7 A12 GLY A 160 ASN A 170 -1 N HIS A 169 O GLN A 177 SHEET 8 A12 HIS A 148 ASP A 155 -1 N ASP A 155 O GLY A 160 SHEET 9 A12 HIS A 199 SER A 208 -1 N THR A 203 O HIS A 148 SHEET 10 A12 HIS A 217 ALA A 227 -1 N ALA A 227 O TYR A 200 SHEET 11 A12 LYS A 41 CYS A 48 -1 N PHE A 46 O MET A 218 SHEET 12 A12 VAL A 29 ASP A 36 -1 N ASP A 36 O LYS A 41 SHEET 1 B12 HIS B 25 ASP B 36 0 SHEET 2 B12 VAL B 11 VAL B 22 -1 N VAL B 22 O HIS B 25 SHEET 3 B12 THR B 118 ILE B 128 1 N LEU B 119 O LEU B 15 SHEET 4 B12 ASN B 105 GLU B 115 -1 N GLU B 115 O THR B 118 SHEET 5 B12 TYR B 92 PHE B 100 -1 N ILE B 98 O TYR B 106 SHEET 6 B12 VAL B 176 PRO B 187 -1 N THR B 186 O VAL B 93 SHEET 7 B12 GLY B 160 ASN B 170 -1 N HIS B 169 O GLN B 177 SHEET 8 B12 HIS B 148 ASP B 155 -1 N ASP B 155 O GLY B 160 SHEET 9 B12 HIS B 199 SER B 208 -1 N THR B 203 O HIS B 148 SHEET 10 B12 HIS B 217 ALA B 227 -1 N ALA B 227 O TYR B 200 SHEET 11 B12 LYS B 41 CYS B 48 -1 N PHE B 46 O MET B 218 SHEET 12 B12 VAL B 29 ASP B 36 -1 N ASP B 36 O LYS B 41 SHEET 1 C12 HIS C 25 ASP C 36 0 SHEET 2 C12 VAL C 11 VAL C 22 -1 N VAL C 22 O HIS C 25 SHEET 3 C12 THR C 118 ILE C 128 1 N LEU C 119 O PRO C 13 SHEET 4 C12 ASN C 105 GLU C 115 -1 N GLU C 115 O THR C 118 SHEET 5 C12 TYR C 92 PHE C 100 -1 N ILE C 98 O TYR C 106 SHEET 6 C12 VAL C 176 PRO C 187 -1 N THR C 186 O VAL C 93 SHEET 7 C12 GLY C 160 ASN C 170 -1 N HIS C 169 O GLN C 177 SHEET 8 C12 HIS C 148 ASP C 155 -1 N ASP C 155 O GLY C 160 SHEET 9 C12 HIS C 199 SER C 208 -1 N THR C 203 O HIS C 148 SHEET 10 C12 HIS C 217 ALA C 227 -1 N ALA C 227 O TYR C 200 SHEET 11 C12 LYS C 41 CYS C 48 -1 N PHE C 46 O MET C 218 SHEET 12 C12 VAL C 29 ASP C 36 -1 N ASP C 36 O LYS C 41 SHEET 1 D12 HIS D 25 ASP D 36 0 SHEET 2 D12 VAL D 11 VAL D 22 -1 N VAL D 22 O HIS D 25 SHEET 3 D12 THR D 118 ILE D 128 1 N LEU D 119 O LEU D 15 SHEET 4 D12 ASN D 105 GLU D 115 -1 N GLU D 115 O THR D 118 SHEET 5 D12 TYR D 92 PHE D 100 -1 N ILE D 98 O TYR D 106 SHEET 6 D12 VAL D 176 PRO D 187 -1 N THR D 186 O VAL D 93 SHEET 7 D12 GLY D 160 ASN D 170 -1 N HIS D 169 O GLN D 177 SHEET 8 D12 HIS D 148 ASP D 155 -1 N ASP D 155 O GLY D 160 SHEET 9 D12 HIS D 199 SER D 208 -1 N THR D 203 O HIS D 148 SHEET 10 D12 HIS D 217 ALA D 227 -1 N ALA D 227 O TYR D 200 SHEET 11 D12 LYS D 41 CYS D 48 -1 N PHE D 46 O MET D 218 SHEET 12 D12 VAL D 29 ASP D 36 -1 N ASP D 36 O LYS D 41 LINK C3 GYS A 66 N VAL A 68 1555 1555 1.33 LINK C3 GYS B 66 N VAL B 68 1555 1555 1.33 LINK C3 GYS C 66 N VAL C 68 1555 1555 1.31 LINK C3 GYS D 66 N VAL D 68 1555 1555 1.32 CISPEP 1 MET A 88 PRO A 89 0 0.23 CISPEP 2 MET B 88 PRO B 89 0 0.50 CISPEP 3 MET C 88 PRO C 89 0 0.99 CISPEP 4 MET D 88 PRO D 89 0 0.51 CRYST1 93.000 52.000 103.000 90.00 101.80 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010753 0.000000 0.002246 0.00000 SCALE2 0.000000 0.019231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009918 0.00000 MTRIX1 1 0.135000 0.990800 -0.005600 -17.55760 1 MTRIX2 1 0.990500 -0.134800 0.025200 -31.61020 1 MTRIX3 1 0.024200 -0.008900 -0.999700 -7.47300 1 MTRIX1 2 0.999600 0.011000 0.024600 8.81930 1 MTRIX2 2 -0.011100 0.999900 0.005500 4.49320 1 MTRIX3 2 -0.024500 -0.005800 0.999700 -50.54040 1 MTRIX1 3 0.131600 0.991300 0.001300 -11.73800 1 MTRIX2 3 0.991300 -0.131600 0.004800 -22.80070 1 MTRIX3 3 0.004900 0.000700 -1.000000 43.92270 1