data_1EMH # _entry.id 1EMH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1EMH pdb_00001emh 10.2210/pdb1emh/pdb NDB PD0127 ? ? RCSB RCSB010723 ? ? WWPDB D_1000010723 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-05-16 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EMH _pdbx_database_status.recvd_initial_deposition_date 2000-03-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1SSP '1SSP contains the same protein complexed to product-containing DNA' unspecified PDB 2SSP '2SSP contains the L272A mutant of UDG bound to an abasic site' unspecified PDB 4SKN '4SKN contains the L272R/D145N mutant of UDG bound to product DNA' unspecified PDB 1AKZ 'UDG without DNA' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Parikh, S.S.' 1 'Slupphaug, G.' 2 'Krokan, H.E.' 3 'Blackburn, G.M.' 4 'Tainer, J.A.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects. ; Proc.Natl.Acad.Sci.USA 97 5083 5088 2000 PNASA6 US 0027-8424 0040 ? 10805771 10.1073/pnas.97.10.5083 1 'Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA' 'Embo J.' 17 5214 5226 1998 EMJODG UK 0261-4189 0897 ? ? 10.1093/emboj/17.17.5214 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Parikh, S.S.' 1 ? primary 'Walcher, G.' 2 ? primary 'Jones, G.D.' 3 ? primary 'Slupphaug, G.' 4 ? primary 'Krokan, H.E.' 5 ? primary 'Blackburn, G.M.' 6 ? primary 'Tainer, J.A.' 7 ? 1 'Parikh, S.S.' 8 ? 1 'Mol, C.D.' 9 ? 1 'Slupphaug, G.' 10 ? 1 'Krokan, H.E.' 11 ? 1 'Tainer, J.A.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*GP*TP*(P2U)P*AP*TP*CP*TP*T)-3') ; 2697.768 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3') ; 3070.071 1 ? ? ? ? 3 polymer man 'URACIL-DNA GLYCOSYLASE' 25544.137 1 3.2.2.3 'RESIDUES 85-304' ? 'MITOCHONDRIAL PROTEIN' 4 water nat water 18.015 171 ? ? ? ? # _entity_name_sys.entity_id 3 _entity_name_sys.name E.C.3.2.2.3 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DT)(DG)(DT)(P2U)(DA)(DT)(DC)(DT)(DT)' TGTUATCTT B ? 2 polydeoxyribonucleotide no no '(DA)(DA)(DA)(DG)(DA)(DT)(DA)(DA)(DC)(DA)' AAAGATAACA C ? 3 'polypeptide(L)' no no ;MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL ; ;MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL ; A ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DT n 1 4 P2U n 1 5 DA n 1 6 DT n 1 7 DC n 1 8 DT n 1 9 DT n 2 1 DA n 2 2 DA n 2 3 DA n 2 4 DG n 2 5 DA n 2 6 DT n 2 7 DA n 2 8 DA n 2 9 DC n 2 10 DA n 3 1 MET n 3 2 GLU n 3 3 PHE n 3 4 PHE n 3 5 GLY n 3 6 GLU n 3 7 SER n 3 8 TRP n 3 9 LYS n 3 10 LYS n 3 11 HIS n 3 12 LEU n 3 13 SER n 3 14 GLY n 3 15 GLU n 3 16 PHE n 3 17 GLY n 3 18 LYS n 3 19 PRO n 3 20 TYR n 3 21 PHE n 3 22 ILE n 3 23 LYS n 3 24 LEU n 3 25 MET n 3 26 GLY n 3 27 PHE n 3 28 VAL n 3 29 ALA n 3 30 GLU n 3 31 GLU n 3 32 ARG n 3 33 LYS n 3 34 HIS n 3 35 TYR n 3 36 THR n 3 37 VAL n 3 38 TYR n 3 39 PRO n 3 40 PRO n 3 41 PRO n 3 42 HIS n 3 43 GLN n 3 44 VAL n 3 45 PHE n 3 46 THR n 3 47 TRP n 3 48 THR n 3 49 GLN n 3 50 MET n 3 51 CYS n 3 52 ASP n 3 53 ILE n 3 54 LYS n 3 55 ASP n 3 56 VAL n 3 57 LYS n 3 58 VAL n 3 59 VAL n 3 60 ILE n 3 61 LEU n 3 62 GLY n 3 63 GLN n 3 64 ASP n 3 65 PRO n 3 66 TYR n 3 67 HIS n 3 68 GLY n 3 69 PRO n 3 70 ASN n 3 71 GLN n 3 72 ALA n 3 73 HIS n 3 74 GLY n 3 75 LEU n 3 76 CYS n 3 77 PHE n 3 78 SER n 3 79 VAL n 3 80 GLN n 3 81 ARG n 3 82 PRO n 3 83 VAL n 3 84 PRO n 3 85 PRO n 3 86 PRO n 3 87 PRO n 3 88 SER n 3 89 LEU n 3 90 GLU n 3 91 ASN n 3 92 ILE n 3 93 TYR n 3 94 LYS n 3 95 GLU n 3 96 LEU n 3 97 SER n 3 98 THR n 3 99 ASP n 3 100 ILE n 3 101 GLU n 3 102 ASP n 3 103 PHE n 3 104 VAL n 3 105 HIS n 3 106 PRO n 3 107 GLY n 3 108 HIS n 3 109 GLY n 3 110 ASP n 3 111 LEU n 3 112 SER n 3 113 GLY n 3 114 TRP n 3 115 ALA n 3 116 LYS n 3 117 GLN n 3 118 GLY n 3 119 VAL n 3 120 LEU n 3 121 LEU n 3 122 LEU n 3 123 ASN n 3 124 ALA n 3 125 VAL n 3 126 LEU n 3 127 THR n 3 128 VAL n 3 129 ARG n 3 130 ALA n 3 131 HIS n 3 132 GLN n 3 133 ALA n 3 134 ASN n 3 135 SER n 3 136 HIS n 3 137 LYS n 3 138 GLU n 3 139 ARG n 3 140 GLY n 3 141 TRP n 3 142 GLU n 3 143 GLN n 3 144 PHE n 3 145 THR n 3 146 ASP n 3 147 ALA n 3 148 VAL n 3 149 VAL n 3 150 SER n 3 151 TRP n 3 152 LEU n 3 153 ASN n 3 154 GLN n 3 155 ASN n 3 156 SER n 3 157 ASN n 3 158 GLY n 3 159 LEU n 3 160 VAL n 3 161 PHE n 3 162 LEU n 3 163 LEU n 3 164 TRP n 3 165 GLY n 3 166 SER n 3 167 TYR n 3 168 ALA n 3 169 GLN n 3 170 LYS n 3 171 LYS n 3 172 GLY n 3 173 SER n 3 174 ALA n 3 175 ILE n 3 176 ASP n 3 177 ARG n 3 178 LYS n 3 179 ARG n 3 180 HIS n 3 181 HIS n 3 182 VAL n 3 183 LEU n 3 184 GLN n 3 185 THR n 3 186 ALA n 3 187 HIS n 3 188 PRO n 3 189 SER n 3 190 PRO n 3 191 LEU n 3 192 SER n 3 193 VAL n 3 194 TYR n 3 195 ARG n 3 196 GLY n 3 197 PHE n 3 198 PHE n 3 199 GLY n 3 200 CYS n 3 201 ARG n 3 202 HIS n 3 203 PHE n 3 204 SER n 3 205 LYS n 3 206 THR n 3 207 ASN n 3 208 GLU n 3 209 LEU n 3 210 LEU n 3 211 GLN n 3 212 LYS n 3 213 SER n 3 214 GLY n 3 215 LYS n 3 216 LYS n 3 217 PRO n 3 218 ILE n 3 219 ASP n 3 220 TRP n 3 221 LYS n 3 222 GLU n 3 223 LEU n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 P2U 'DNA linking' n "2'-DEOXY-PSEUDOURIDINE-5'MONOPHOSPHATE" ? 'C9 H13 N2 O8 P' 308.182 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 2 2 DT T B . n A 1 2 DG 2 3 3 DG G B . n A 1 3 DT 3 4 4 DT T B . n A 1 4 P2U 4 5 5 P2U P2U B . n A 1 5 DA 5 6 6 DA A B . n A 1 6 DT 6 7 7 DT T B . n A 1 7 DC 7 8 8 DC C B . n A 1 8 DT 8 9 9 DT T B . n A 1 9 DT 9 10 10 DT T B . n B 2 1 DA 1 21 21 DA A C . n B 2 2 DA 2 22 22 DA A C . n B 2 3 DA 3 23 23 DA A C . n B 2 4 DG 4 24 24 DG G C . n B 2 5 DA 5 25 25 DA A C . n B 2 6 DT 6 26 26 DT T C . n B 2 7 DA 7 27 27 DA A C . n B 2 8 DA 8 28 28 DA A C . n B 2 9 DC 9 29 29 DC C C . n B 2 10 DA 10 30 30 DA A C . n C 3 1 MET 1 82 82 MET MET A . n C 3 2 GLU 2 83 83 GLU GLU A . n C 3 3 PHE 3 84 84 PHE PHE A . n C 3 4 PHE 4 85 85 PHE PHE A . n C 3 5 GLY 5 86 86 GLY GLY A . n C 3 6 GLU 6 87 87 GLU GLU A . n C 3 7 SER 7 88 88 SER SER A . n C 3 8 TRP 8 89 89 TRP TRP A . n C 3 9 LYS 9 90 90 LYS LYS A . n C 3 10 LYS 10 91 91 LYS LYS A . n C 3 11 HIS 11 92 92 HIS HIS A . n C 3 12 LEU 12 93 93 LEU LEU A . n C 3 13 SER 13 94 94 SER SER A . n C 3 14 GLY 14 95 95 GLY GLY A . n C 3 15 GLU 15 96 96 GLU GLU A . n C 3 16 PHE 16 97 97 PHE PHE A . n C 3 17 GLY 17 98 98 GLY GLY A . n C 3 18 LYS 18 99 99 LYS LYS A . n C 3 19 PRO 19 100 100 PRO PRO A . n C 3 20 TYR 20 101 101 TYR TYR A . n C 3 21 PHE 21 102 102 PHE PHE A . n C 3 22 ILE 22 103 103 ILE ILE A . n C 3 23 LYS 23 104 104 LYS LYS A . n C 3 24 LEU 24 105 105 LEU LEU A . n C 3 25 MET 25 106 106 MET MET A . n C 3 26 GLY 26 107 107 GLY GLY A . n C 3 27 PHE 27 108 108 PHE PHE A . n C 3 28 VAL 28 109 109 VAL VAL A . n C 3 29 ALA 29 110 110 ALA ALA A . n C 3 30 GLU 30 111 111 GLU GLU A . n C 3 31 GLU 31 112 112 GLU GLU A . n C 3 32 ARG 32 113 113 ARG ARG A . n C 3 33 LYS 33 114 114 LYS LYS A . n C 3 34 HIS 34 115 115 HIS HIS A . n C 3 35 TYR 35 116 116 TYR TYR A . n C 3 36 THR 36 117 117 THR THR A . n C 3 37 VAL 37 118 118 VAL VAL A . n C 3 38 TYR 38 119 119 TYR TYR A . n C 3 39 PRO 39 120 120 PRO PRO A . n C 3 40 PRO 40 121 121 PRO PRO A . n C 3 41 PRO 41 122 122 PRO PRO A . n C 3 42 HIS 42 123 123 HIS HIS A . n C 3 43 GLN 43 124 124 GLN GLN A . n C 3 44 VAL 44 125 125 VAL VAL A . n C 3 45 PHE 45 126 126 PHE PHE A . n C 3 46 THR 46 127 127 THR THR A . n C 3 47 TRP 47 128 128 TRP TRP A . n C 3 48 THR 48 129 129 THR THR A . n C 3 49 GLN 49 130 130 GLN GLN A . n C 3 50 MET 50 131 131 MET MET A . n C 3 51 CYS 51 132 132 CYS CYS A . n C 3 52 ASP 52 133 133 ASP ASP A . n C 3 53 ILE 53 134 134 ILE ILE A . n C 3 54 LYS 54 135 135 LYS LYS A . n C 3 55 ASP 55 136 136 ASP ASP A . n C 3 56 VAL 56 137 137 VAL VAL A . n C 3 57 LYS 57 138 138 LYS LYS A . n C 3 58 VAL 58 139 139 VAL VAL A . n C 3 59 VAL 59 140 140 VAL VAL A . n C 3 60 ILE 60 141 141 ILE ILE A . n C 3 61 LEU 61 142 142 LEU LEU A . n C 3 62 GLY 62 143 143 GLY GLY A . n C 3 63 GLN 63 144 144 GLN GLN A . n C 3 64 ASP 64 145 145 ASP ASP A . n C 3 65 PRO 65 146 146 PRO PRO A . n C 3 66 TYR 66 147 147 TYR TYR A . n C 3 67 HIS 67 148 148 HIS HIS A . n C 3 68 GLY 68 149 149 GLY GLY A . n C 3 69 PRO 69 150 150 PRO PRO A . n C 3 70 ASN 70 151 151 ASN ASN A . n C 3 71 GLN 71 152 152 GLN GLN A . n C 3 72 ALA 72 153 153 ALA ALA A . n C 3 73 HIS 73 154 154 HIS HIS A . n C 3 74 GLY 74 155 155 GLY GLY A . n C 3 75 LEU 75 156 156 LEU LEU A . n C 3 76 CYS 76 157 157 CYS CYS A . n C 3 77 PHE 77 158 158 PHE PHE A . n C 3 78 SER 78 159 159 SER SER A . n C 3 79 VAL 79 160 160 VAL VAL A . n C 3 80 GLN 80 161 161 GLN GLN A . n C 3 81 ARG 81 162 162 ARG ARG A . n C 3 82 PRO 82 163 163 PRO PRO A . n C 3 83 VAL 83 164 164 VAL VAL A . n C 3 84 PRO 84 165 165 PRO PRO A . n C 3 85 PRO 85 166 166 PRO PRO A . n C 3 86 PRO 86 167 167 PRO PRO A . n C 3 87 PRO 87 168 168 PRO PRO A . n C 3 88 SER 88 169 169 SER SER A . n C 3 89 LEU 89 170 170 LEU LEU A . n C 3 90 GLU 90 171 171 GLU GLU A . n C 3 91 ASN 91 172 172 ASN ASN A . n C 3 92 ILE 92 173 173 ILE ILE A . n C 3 93 TYR 93 174 174 TYR TYR A . n C 3 94 LYS 94 175 175 LYS LYS A . n C 3 95 GLU 95 176 176 GLU GLU A . n C 3 96 LEU 96 177 177 LEU LEU A . n C 3 97 SER 97 178 178 SER SER A . n C 3 98 THR 98 179 179 THR THR A . n C 3 99 ASP 99 180 180 ASP ASP A . n C 3 100 ILE 100 181 181 ILE ILE A . n C 3 101 GLU 101 182 182 GLU GLU A . n C 3 102 ASP 102 183 183 ASP ASP A . n C 3 103 PHE 103 184 184 PHE PHE A . n C 3 104 VAL 104 185 185 VAL VAL A . n C 3 105 HIS 105 186 186 HIS HIS A . n C 3 106 PRO 106 187 187 PRO PRO A . n C 3 107 GLY 107 188 188 GLY GLY A . n C 3 108 HIS 108 189 189 HIS HIS A . n C 3 109 GLY 109 190 190 GLY GLY A . n C 3 110 ASP 110 191 191 ASP ASP A . n C 3 111 LEU 111 192 192 LEU LEU A . n C 3 112 SER 112 193 193 SER SER A . n C 3 113 GLY 113 194 194 GLY GLY A . n C 3 114 TRP 114 195 195 TRP TRP A . n C 3 115 ALA 115 196 196 ALA ALA A . n C 3 116 LYS 116 197 197 LYS LYS A . n C 3 117 GLN 117 198 198 GLN GLN A . n C 3 118 GLY 118 199 199 GLY GLY A . n C 3 119 VAL 119 200 200 VAL VAL A . n C 3 120 LEU 120 201 201 LEU LEU A . n C 3 121 LEU 121 202 202 LEU LEU A . n C 3 122 LEU 122 203 203 LEU LEU A . n C 3 123 ASN 123 204 204 ASN ASN A . n C 3 124 ALA 124 205 205 ALA ALA A . n C 3 125 VAL 125 206 206 VAL VAL A . n C 3 126 LEU 126 207 207 LEU LEU A . n C 3 127 THR 127 208 208 THR THR A . n C 3 128 VAL 128 209 209 VAL VAL A . n C 3 129 ARG 129 210 210 ARG ARG A . n C 3 130 ALA 130 211 211 ALA ALA A . n C 3 131 HIS 131 212 212 HIS HIS A . n C 3 132 GLN 132 213 213 GLN GLN A . n C 3 133 ALA 133 214 214 ALA ALA A . n C 3 134 ASN 134 215 215 ASN ASN A . n C 3 135 SER 135 216 216 SER SER A . n C 3 136 HIS 136 217 217 HIS HIS A . n C 3 137 LYS 137 218 218 LYS LYS A . n C 3 138 GLU 138 219 219 GLU GLU A . n C 3 139 ARG 139 220 220 ARG ARG A . n C 3 140 GLY 140 221 221 GLY GLY A . n C 3 141 TRP 141 222 222 TRP TRP A . n C 3 142 GLU 142 223 223 GLU GLU A . n C 3 143 GLN 143 224 224 GLN GLN A . n C 3 144 PHE 144 225 225 PHE PHE A . n C 3 145 THR 145 226 226 THR THR A . n C 3 146 ASP 146 227 227 ASP ASP A . n C 3 147 ALA 147 228 228 ALA ALA A . n C 3 148 VAL 148 229 229 VAL VAL A . n C 3 149 VAL 149 230 230 VAL VAL A . n C 3 150 SER 150 231 231 SER SER A . n C 3 151 TRP 151 232 232 TRP TRP A . n C 3 152 LEU 152 233 233 LEU LEU A . n C 3 153 ASN 153 234 234 ASN ASN A . n C 3 154 GLN 154 235 235 GLN GLN A . n C 3 155 ASN 155 236 236 ASN ASN A . n C 3 156 SER 156 237 237 SER SER A . n C 3 157 ASN 157 238 238 ASN ASN A . n C 3 158 GLY 158 239 239 GLY GLY A . n C 3 159 LEU 159 240 240 LEU LEU A . n C 3 160 VAL 160 241 241 VAL VAL A . n C 3 161 PHE 161 242 242 PHE PHE A . n C 3 162 LEU 162 243 243 LEU LEU A . n C 3 163 LEU 163 244 244 LEU LEU A . n C 3 164 TRP 164 245 245 TRP TRP A . n C 3 165 GLY 165 246 246 GLY GLY A . n C 3 166 SER 166 247 247 SER SER A . n C 3 167 TYR 167 248 248 TYR TYR A . n C 3 168 ALA 168 249 249 ALA ALA A . n C 3 169 GLN 169 250 250 GLN GLN A . n C 3 170 LYS 170 251 251 LYS LYS A . n C 3 171 LYS 171 252 252 LYS LYS A . n C 3 172 GLY 172 253 253 GLY GLY A . n C 3 173 SER 173 254 254 SER SER A . n C 3 174 ALA 174 255 255 ALA ALA A . n C 3 175 ILE 175 256 256 ILE ILE A . n C 3 176 ASP 176 257 257 ASP ASP A . n C 3 177 ARG 177 258 258 ARG ARG A . n C 3 178 LYS 178 259 259 LYS LYS A . n C 3 179 ARG 179 260 260 ARG ARG A . n C 3 180 HIS 180 261 261 HIS HIS A . n C 3 181 HIS 181 262 262 HIS HIS A . n C 3 182 VAL 182 263 263 VAL VAL A . n C 3 183 LEU 183 264 264 LEU LEU A . n C 3 184 GLN 184 265 265 GLN GLN A . n C 3 185 THR 185 266 266 THR THR A . n C 3 186 ALA 186 267 267 ALA ALA A . n C 3 187 HIS 187 268 268 HIS HIS A . n C 3 188 PRO 188 269 269 PRO PRO A . n C 3 189 SER 189 270 270 SER SER A . n C 3 190 PRO 190 271 271 PRO PRO A . n C 3 191 LEU 191 272 272 LEU LEU A . n C 3 192 SER 192 273 273 SER SER A . n C 3 193 VAL 193 274 274 VAL VAL A . n C 3 194 TYR 194 275 275 TYR TYR A . n C 3 195 ARG 195 276 276 ARG ARG A . n C 3 196 GLY 196 277 277 GLY GLY A . n C 3 197 PHE 197 278 278 PHE PHE A . n C 3 198 PHE 198 279 279 PHE PHE A . n C 3 199 GLY 199 280 280 GLY GLY A . n C 3 200 CYS 200 281 281 CYS CYS A . n C 3 201 ARG 201 282 282 ARG ARG A . n C 3 202 HIS 202 283 283 HIS HIS A . n C 3 203 PHE 203 284 284 PHE PHE A . n C 3 204 SER 204 285 285 SER SER A . n C 3 205 LYS 205 286 286 LYS LYS A . n C 3 206 THR 206 287 287 THR THR A . n C 3 207 ASN 207 288 288 ASN ASN A . n C 3 208 GLU 208 289 289 GLU GLU A . n C 3 209 LEU 209 290 290 LEU LEU A . n C 3 210 LEU 210 291 291 LEU LEU A . n C 3 211 GLN 211 292 292 GLN GLN A . n C 3 212 LYS 212 293 293 LYS LYS A . n C 3 213 SER 213 294 294 SER SER A . n C 3 214 GLY 214 295 295 GLY GLY A . n C 3 215 LYS 215 296 296 LYS LYS A . n C 3 216 LYS 216 297 297 LYS LYS A . n C 3 217 PRO 217 298 298 PRO PRO A . n C 3 218 ILE 218 299 299 ILE ILE A . n C 3 219 ASP 219 300 300 ASP ASP A . n C 3 220 TRP 220 301 301 TRP TRP A . n C 3 221 LYS 221 302 302 LYS LYS A . n C 3 222 GLU 222 303 303 GLU GLU A . n C 3 223 LEU 223 304 304 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 610 610 HOH HOH B . D 4 HOH 2 637 637 HOH HOH B . D 4 HOH 3 645 645 HOH HOH B . D 4 HOH 4 662 662 HOH HOH B . D 4 HOH 5 700 700 HOH HOH B . D 4 HOH 6 702 702 HOH HOH B . D 4 HOH 7 724 724 HOH HOH B . D 4 HOH 8 726 726 HOH HOH B . D 4 HOH 9 727 727 HOH HOH B . D 4 HOH 10 747 747 HOH HOH B . D 4 HOH 11 748 748 HOH HOH B . D 4 HOH 12 757 757 HOH HOH B . D 4 HOH 13 764 764 HOH HOH B . D 4 HOH 14 774 774 HOH HOH B . D 4 HOH 15 775 775 HOH HOH B . E 4 HOH 1 786 786 HOH HOH C . E 4 HOH 2 790 790 HOH HOH C . E 4 HOH 3 791 791 HOH HOH C . F 4 HOH 1 600 600 HOH HOH A . F 4 HOH 2 601 601 HOH HOH A . F 4 HOH 3 602 602 HOH HOH A . F 4 HOH 4 605 605 HOH HOH A . F 4 HOH 5 606 606 HOH HOH A . F 4 HOH 6 607 607 HOH HOH A . F 4 HOH 7 608 608 HOH HOH A . F 4 HOH 8 609 609 HOH HOH A . F 4 HOH 9 611 611 HOH HOH A . F 4 HOH 10 612 612 HOH HOH A . F 4 HOH 11 613 613 HOH HOH A . F 4 HOH 12 614 614 HOH HOH A . F 4 HOH 13 615 615 HOH HOH A . F 4 HOH 14 617 617 HOH HOH A . F 4 HOH 15 618 618 HOH HOH A . F 4 HOH 16 619 619 HOH HOH A . F 4 HOH 17 621 621 HOH HOH A . F 4 HOH 18 622 622 HOH HOH A . F 4 HOH 19 623 623 HOH HOH A . F 4 HOH 20 624 624 HOH HOH A . F 4 HOH 21 625 625 HOH HOH A . F 4 HOH 22 627 627 HOH HOH A . F 4 HOH 23 629 629 HOH HOH A . F 4 HOH 24 630 630 HOH HOH A . F 4 HOH 25 631 631 HOH HOH A . F 4 HOH 26 633 633 HOH HOH A . F 4 HOH 27 634 634 HOH HOH A . F 4 HOH 28 635 635 HOH HOH A . F 4 HOH 29 636 636 HOH HOH A . F 4 HOH 30 638 638 HOH HOH A . F 4 HOH 31 641 641 HOH HOH A . F 4 HOH 32 642 642 HOH HOH A . F 4 HOH 33 643 643 HOH HOH A . F 4 HOH 34 644 644 HOH HOH A . F 4 HOH 35 646 646 HOH HOH A . F 4 HOH 36 650 650 HOH HOH A . F 4 HOH 37 651 651 HOH HOH A . F 4 HOH 38 652 652 HOH HOH A . F 4 HOH 39 653 653 HOH HOH A . F 4 HOH 40 654 654 HOH HOH A . F 4 HOH 41 655 655 HOH HOH A . F 4 HOH 42 658 658 HOH HOH A . F 4 HOH 43 659 659 HOH HOH A . F 4 HOH 44 660 660 HOH HOH A . F 4 HOH 45 663 663 HOH HOH A . F 4 HOH 46 665 665 HOH HOH A . F 4 HOH 47 666 666 HOH HOH A . F 4 HOH 48 667 667 HOH HOH A . F 4 HOH 49 668 668 HOH HOH A . F 4 HOH 50 669 669 HOH HOH A . F 4 HOH 51 671 671 HOH HOH A . F 4 HOH 52 672 672 HOH HOH A . F 4 HOH 53 673 673 HOH HOH A . F 4 HOH 54 675 675 HOH HOH A . F 4 HOH 55 677 677 HOH HOH A . F 4 HOH 56 678 678 HOH HOH A . F 4 HOH 57 680 680 HOH HOH A . F 4 HOH 58 681 681 HOH HOH A . F 4 HOH 59 684 684 HOH HOH A . F 4 HOH 60 685 685 HOH HOH A . F 4 HOH 61 686 686 HOH HOH A . F 4 HOH 62 688 688 HOH HOH A . F 4 HOH 63 689 689 HOH HOH A . F 4 HOH 64 692 692 HOH HOH A . F 4 HOH 65 696 696 HOH HOH A . F 4 HOH 66 699 699 HOH HOH A . F 4 HOH 67 703 703 HOH HOH A . F 4 HOH 68 710 710 HOH HOH A . F 4 HOH 69 712 712 HOH HOH A . F 4 HOH 70 713 713 HOH HOH A . F 4 HOH 71 714 714 HOH HOH A . F 4 HOH 72 717 717 HOH HOH A . F 4 HOH 73 718 718 HOH HOH A . F 4 HOH 74 719 719 HOH HOH A . F 4 HOH 75 720 720 HOH HOH A . F 4 HOH 76 721 721 HOH HOH A . F 4 HOH 77 722 722 HOH HOH A . F 4 HOH 78 723 723 HOH HOH A . F 4 HOH 79 725 725 HOH HOH A . F 4 HOH 80 728 728 HOH HOH A . F 4 HOH 81 729 729 HOH HOH A . F 4 HOH 82 730 730 HOH HOH A . F 4 HOH 83 731 731 HOH HOH A . F 4 HOH 84 732 732 HOH HOH A . F 4 HOH 85 733 733 HOH HOH A . F 4 HOH 86 734 734 HOH HOH A . F 4 HOH 87 735 735 HOH HOH A . F 4 HOH 88 736 736 HOH HOH A . F 4 HOH 89 737 737 HOH HOH A . F 4 HOH 90 738 738 HOH HOH A . F 4 HOH 91 739 739 HOH HOH A . F 4 HOH 92 740 740 HOH HOH A . F 4 HOH 93 741 741 HOH HOH A . F 4 HOH 94 742 742 HOH HOH A . F 4 HOH 95 743 743 HOH HOH A . F 4 HOH 96 744 744 HOH HOH A . F 4 HOH 97 745 745 HOH HOH A . F 4 HOH 98 746 746 HOH HOH A . F 4 HOH 99 749 749 HOH HOH A . F 4 HOH 100 750 750 HOH HOH A . F 4 HOH 101 751 751 HOH HOH A . F 4 HOH 102 752 752 HOH HOH A . F 4 HOH 103 753 753 HOH HOH A . F 4 HOH 104 754 754 HOH HOH A . F 4 HOH 105 755 755 HOH HOH A . F 4 HOH 106 756 756 HOH HOH A . F 4 HOH 107 758 758 HOH HOH A . F 4 HOH 108 759 759 HOH HOH A . F 4 HOH 109 760 760 HOH HOH A . F 4 HOH 110 761 761 HOH HOH A . F 4 HOH 111 762 762 HOH HOH A . F 4 HOH 112 763 763 HOH HOH A . F 4 HOH 113 765 765 HOH HOH A . F 4 HOH 114 766 766 HOH HOH A . F 4 HOH 115 767 767 HOH HOH A . F 4 HOH 116 768 768 HOH HOH A . F 4 HOH 117 769 769 HOH HOH A . F 4 HOH 118 770 770 HOH HOH A . F 4 HOH 119 771 771 HOH HOH A . F 4 HOH 120 773 773 HOH HOH A . F 4 HOH 121 776 776 HOH HOH A . F 4 HOH 122 777 777 HOH HOH A . F 4 HOH 123 778 778 HOH HOH A . F 4 HOH 124 779 779 HOH HOH A . F 4 HOH 125 780 780 HOH HOH A . F 4 HOH 126 781 781 HOH HOH A . F 4 HOH 127 782 782 HOH HOH A . F 4 HOH 128 783 783 HOH HOH A . F 4 HOH 129 784 784 HOH HOH A . F 4 HOH 130 788 788 HOH HOH A . F 4 HOH 131 789 789 HOH HOH A . F 4 HOH 132 792 792 HOH HOH A . F 4 HOH 133 793 793 HOH HOH A . F 4 HOH 134 794 794 HOH HOH A . F 4 HOH 135 795 795 HOH HOH A . F 4 HOH 136 796 796 HOH HOH A . F 4 HOH 137 798 798 HOH HOH A . F 4 HOH 138 799 799 HOH HOH A . F 4 HOH 139 800 800 HOH HOH A . F 4 HOH 140 801 801 HOH HOH A . F 4 HOH 141 802 802 HOH HOH A . F 4 HOH 142 803 803 HOH HOH A . F 4 HOH 143 804 804 HOH HOH A . F 4 HOH 144 805 805 HOH HOH A . F 4 HOH 145 806 806 HOH HOH A . F 4 HOH 146 808 808 HOH HOH A . F 4 HOH 147 809 809 HOH HOH A . F 4 HOH 148 810 810 HOH HOH A . F 4 HOH 149 811 811 HOH HOH A . F 4 HOH 150 812 812 HOH HOH A . F 4 HOH 151 813 813 HOH HOH A . F 4 HOH 152 814 814 HOH HOH A . F 4 HOH 153 815 815 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 CNS refinement . ? 2 Adxv 'data processing' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 1EMH _cell.length_a 48.655 _cell.length_b 64.815 _cell.length_c 94.964 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EMH _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 # _exptl.entry_id 1EMH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.22 _exptl_crystal.density_Matthews 2.38 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'PEG 4000, HEPES buffer, NaCl, dioxane, DTT, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 297K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'HEPES buffer' ? ? ? 1 2 1 NaCl ? ? ? 1 3 1 dioxane ? ? ? 1 4 1 DTT ? ? ? 1 5 1 'PEG 4000' ? ? ? 1 6 2 'PEG 4000' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 110.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ADSC _diffrn_detector.pdbx_collection_date 1999-08-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-D' _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-D _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1EMH _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.8 _reflns.number_obs 26594 _reflns.number_all 28501 _reflns.percent_possible_obs 93.0 _reflns.pdbx_Rmerge_I_obs 0.0520000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.9 _reflns.B_iso_Wilson_estimate 20.02 _reflns.pdbx_redundancy 4.3 _reflns.R_free_details ? _reflns.limit_h_min ? _reflns.limit_k_min ? _reflns.limit_l_min ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.8 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 58.0 _reflns_shell.Rmerge_I_obs 0.2310000 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 2.2 _reflns_shell.number_unique_all 1636 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1EMH _refine.ls_number_reflns_obs 26133 _refine.ls_number_reflns_all 28501 _refine.pdbx_ls_sigma_I 1.0 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 1.8 _refine.ls_percent_reflns_obs 92.0 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2160000 _refine.ls_R_factor_R_free 0.2330000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10 _refine.ls_number_reflns_R_free 2660 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1808 _refine_hist.pdbx_number_atoms_nucleic_acid 383 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 171 _refine_hist.number_atoms_total 2362 _refine_hist.d_res_high 1.8 _refine_hist.d_res_low 20.0 # _database_PDB_matrix.entry_id 1EMH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1EMH _struct.title 'CRYSTAL STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO UNCLEAVED SUBSTRATE-CONTAINING DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EMH _struct_keywords.pdbx_keywords hydrolase/DNA _struct_keywords.text 'alpha/beta fold, Uracil-DNA Glycosylase, protein/DNA, hydrolase-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP UNG_HUMAN P13051 3 94 ? ? 2 PDB 1EMH 1EMH 1 ? ? ? 3 PDB 1EMH 1EMH 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1EMH A 1 ? 223 ? P13051 94 ? 313 ? 82 304 2 2 1EMH B 1 ? 9 ? 1EMH 2 ? 10 ? 2 10 3 3 1EMH C 1 ? 10 ? 1EMH 21 ? 30 ? 21 30 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1EMH MET A 1 ? UNP P13051 PRO 82 conflict 82 1 1 1EMH GLU A 2 ? UNP P13051 VAL 83 conflict 83 2 1 1EMH PHE A 3 ? UNP P13051 GLY 84 conflict 84 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY C 5 ? SER C 13 ? GLY A 86 SER A 94 1 ? 9 HELX_P HELX_P2 2 GLY C 14 ? PHE C 16 ? GLY A 95 PHE A 97 5 ? 3 HELX_P HELX_P3 3 LYS C 18 ? TYR C 35 ? LYS A 99 TYR A 116 1 ? 18 HELX_P HELX_P4 4 PRO C 40 ? VAL C 44 ? PRO A 121 VAL A 125 5 ? 5 HELX_P HELX_P5 5 PHE C 45 ? GLN C 49 ? PHE A 126 GLN A 130 5 ? 5 HELX_P HELX_P6 6 ASP C 52 ? VAL C 56 ? ASP A 133 VAL A 137 5 ? 5 HELX_P HELX_P7 7 PRO C 86 ? ILE C 100 ? PRO A 167 ILE A 181 1 ? 15 HELX_P HELX_P8 8 LEU C 111 ? LYS C 116 ? LEU A 192 LYS A 197 1 ? 6 HELX_P HELX_P9 9 GLY C 140 ? SER C 156 ? GLY A 221 SER A 237 1 ? 17 HELX_P HELX_P10 10 GLY C 165 ? LYS C 170 ? GLY A 246 LYS A 251 1 ? 6 HELX_P HELX_P11 11 LYS C 171 ? ILE C 175 ? LYS A 252 ILE A 256 5 ? 5 HELX_P HELX_P12 12 SER C 192 ? GLY C 196 ? SER A 273 GLY A 277 5 ? 5 HELX_P HELX_P13 13 ARG C 201 ? SER C 213 ? ARG A 282 SER A 294 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 3 "O3'" ? ? ? 1_555 A P2U 4 P ? ? B DT 4 B P2U 5 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale2 covale both ? A P2U 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? B P2U 5 B DA 6 1_555 ? ? ? ? ? ? ? 1.617 ? ? hydrog1 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 10 N6 ? ? B DT 2 C DA 30 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog2 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? B DG 3 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 9 O2 ? ? B DG 3 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 9 N4 ? ? B DG 3 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 8 N1 ? ? B DT 4 C DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 8 N6 ? ? B DT 4 C DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 6 N3 ? ? B DA 6 C DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 6 O4 ? ? B DA 6 C DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 5 N1 ? ? B DT 7 C DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 5 N6 ? ? B DT 7 C DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? B DC 8 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? B DC 8 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? B DC 8 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? B DT 9 C DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? B DT 9 C DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 2 N1 ? ? B DT 10 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 2 N6 ? ? B DT 10 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 38 C . ? TYR 119 A PRO 39 C ? PRO 120 A 1 -0.98 2 ARG 81 C . ? ARG 162 A PRO 82 C ? PRO 163 A 1 -0.12 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL C 37 ? TYR C 38 ? VAL A 118 TYR A 119 A 2 VAL C 128 ? ARG C 129 ? VAL A 209 ARG A 210 B 1 VAL C 119 ? ASN C 123 ? VAL A 200 ASN A 204 B 2 VAL C 58 ? GLY C 62 ? VAL A 139 GLY A 143 B 3 VAL C 160 ? TRP C 164 ? VAL A 241 TRP A 245 B 4 HIS C 181 ? THR C 185 ? HIS A 262 THR A 266 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR C 38 ? N TYR A 119 O VAL C 128 ? O VAL A 209 B 1 2 N LEU C 120 ? N LEU A 201 O VAL C 58 ? O VAL A 139 B 2 3 N VAL C 59 ? N VAL A 140 O VAL C 160 ? O VAL A 241 B 3 4 N PHE C 161 ? N PHE A 242 O HIS C 181 ? O HIS A 262 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 N6 _pdbx_validate_symm_contact.auth_asym_id_1 C _pdbx_validate_symm_contact.auth_comp_id_1 DA _pdbx_validate_symm_contact.auth_seq_id_1 27 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 NE1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 TRP _pdbx_validate_symm_contact.auth_seq_id_2 232 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_555 _pdbx_validate_symm_contact.dist 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 83 ? ? -137.72 -158.96 2 1 ASN A 151 ? ? 57.07 17.60 3 1 GLN A 152 ? ? -93.68 -69.39 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id P2U _pdbx_struct_mod_residue.label_seq_id 4 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id P2U _pdbx_struct_mod_residue.auth_seq_id 5 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DU _pdbx_struct_mod_residue.details "2'-DEOXY-PSEUDOURIDINE-5'MONOPHOSPHATE" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 P2U N1 N N N 393 P2U C2 C N N 394 P2U N3 N N N 395 P2U C4 C N N 396 P2U C5 C N N 397 P2U C6 C N N 398 P2U O2 O N N 399 P2U O4 O N N 400 P2U "C1'" C N R 401 P2U "C2'" C N N 402 P2U "C3'" C N S 403 P2U "C4'" C N R 404 P2U "O3'" O N N 405 P2U "O4'" O N N 406 P2U "C5'" C N N 407 P2U "O5'" O N N 408 P2U P P N N 409 P2U OP1 O N N 410 P2U OP2 O N N 411 P2U OP3 O N N 412 P2U HN1 H N N 413 P2U HN3 H N N 414 P2U H6 H N N 415 P2U "H1'" H N N 416 P2U "H2'" H N N 417 P2U "H2''" H N N 418 P2U "H3'" H N N 419 P2U "H4'" H N N 420 P2U "HO3'" H N N 421 P2U "H5'" H N N 422 P2U "H5''" H N N 423 P2U HOP2 H N N 424 P2U HOP3 H N N 425 PHE N N N N 426 PHE CA C N S 427 PHE C C N N 428 PHE O O N N 429 PHE CB C N N 430 PHE CG C Y N 431 PHE CD1 C Y N 432 PHE CD2 C Y N 433 PHE CE1 C Y N 434 PHE CE2 C Y N 435 PHE CZ C Y N 436 PHE OXT O N N 437 PHE H H N N 438 PHE H2 H N N 439 PHE HA H N N 440 PHE HB2 H N N 441 PHE HB3 H N N 442 PHE HD1 H N N 443 PHE HD2 H N N 444 PHE HE1 H N N 445 PHE HE2 H N N 446 PHE HZ H N N 447 PHE HXT H N N 448 PRO N N N N 449 PRO CA C N S 450 PRO C C N N 451 PRO O O N N 452 PRO CB C N N 453 PRO CG C N N 454 PRO CD C N N 455 PRO OXT O N N 456 PRO H H N N 457 PRO HA H N N 458 PRO HB2 H N N 459 PRO HB3 H N N 460 PRO HG2 H N N 461 PRO HG3 H N N 462 PRO HD2 H N N 463 PRO HD3 H N N 464 PRO HXT H N N 465 SER N N N N 466 SER CA C N S 467 SER C C N N 468 SER O O N N 469 SER CB C N N 470 SER OG O N N 471 SER OXT O N N 472 SER H H N N 473 SER H2 H N N 474 SER HA H N N 475 SER HB2 H N N 476 SER HB3 H N N 477 SER HG H N N 478 SER HXT H N N 479 THR N N N N 480 THR CA C N S 481 THR C C N N 482 THR O O N N 483 THR CB C N R 484 THR OG1 O N N 485 THR CG2 C N N 486 THR OXT O N N 487 THR H H N N 488 THR H2 H N N 489 THR HA H N N 490 THR HB H N N 491 THR HG1 H N N 492 THR HG21 H N N 493 THR HG22 H N N 494 THR HG23 H N N 495 THR HXT H N N 496 TRP N N N N 497 TRP CA C N S 498 TRP C C N N 499 TRP O O N N 500 TRP CB C N N 501 TRP CG C Y N 502 TRP CD1 C Y N 503 TRP CD2 C Y N 504 TRP NE1 N Y N 505 TRP CE2 C Y N 506 TRP CE3 C Y N 507 TRP CZ2 C Y N 508 TRP CZ3 C Y N 509 TRP CH2 C Y N 510 TRP OXT O N N 511 TRP H H N N 512 TRP H2 H N N 513 TRP HA H N N 514 TRP HB2 H N N 515 TRP HB3 H N N 516 TRP HD1 H N N 517 TRP HE1 H N N 518 TRP HE3 H N N 519 TRP HZ2 H N N 520 TRP HZ3 H N N 521 TRP HH2 H N N 522 TRP HXT H N N 523 TYR N N N N 524 TYR CA C N S 525 TYR C C N N 526 TYR O O N N 527 TYR CB C N N 528 TYR CG C Y N 529 TYR CD1 C Y N 530 TYR CD2 C Y N 531 TYR CE1 C Y N 532 TYR CE2 C Y N 533 TYR CZ C Y N 534 TYR OH O N N 535 TYR OXT O N N 536 TYR H H N N 537 TYR H2 H N N 538 TYR HA H N N 539 TYR HB2 H N N 540 TYR HB3 H N N 541 TYR HD1 H N N 542 TYR HD2 H N N 543 TYR HE1 H N N 544 TYR HE2 H N N 545 TYR HH H N N 546 TYR HXT H N N 547 VAL N N N N 548 VAL CA C N S 549 VAL C C N N 550 VAL O O N N 551 VAL CB C N N 552 VAL CG1 C N N 553 VAL CG2 C N N 554 VAL OXT O N N 555 VAL H H N N 556 VAL H2 H N N 557 VAL HA H N N 558 VAL HB H N N 559 VAL HG11 H N N 560 VAL HG12 H N N 561 VAL HG13 H N N 562 VAL HG21 H N N 563 VAL HG22 H N N 564 VAL HG23 H N N 565 VAL HXT H N N 566 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 P2U N1 C2 sing N N 386 P2U N1 C6 sing N N 387 P2U N1 HN1 sing N N 388 P2U C2 N3 sing N N 389 P2U C2 O2 doub N N 390 P2U N3 C4 sing N N 391 P2U N3 HN3 sing N N 392 P2U C4 C5 sing N N 393 P2U C4 O4 doub N N 394 P2U C5 C6 doub N N 395 P2U C5 "C1'" sing N N 396 P2U C6 H6 sing N N 397 P2U "C1'" "C2'" sing N N 398 P2U "C1'" "O4'" sing N N 399 P2U "C1'" "H1'" sing N N 400 P2U "C2'" "C3'" sing N N 401 P2U "C2'" "H2'" sing N N 402 P2U "C2'" "H2''" sing N N 403 P2U "C3'" "C4'" sing N N 404 P2U "C3'" "O3'" sing N N 405 P2U "C3'" "H3'" sing N N 406 P2U "C4'" "O4'" sing N N 407 P2U "C4'" "C5'" sing N N 408 P2U "C4'" "H4'" sing N N 409 P2U "O3'" "HO3'" sing N N 410 P2U "C5'" "O5'" sing N N 411 P2U "C5'" "H5'" sing N N 412 P2U "C5'" "H5''" sing N N 413 P2U "O5'" P sing N N 414 P2U P OP1 doub N N 415 P2U P OP2 sing N N 416 P2U P OP3 sing N N 417 P2U OP2 HOP2 sing N N 418 P2U OP3 HOP3 sing N N 419 PHE N CA sing N N 420 PHE N H sing N N 421 PHE N H2 sing N N 422 PHE CA C sing N N 423 PHE CA CB sing N N 424 PHE CA HA sing N N 425 PHE C O doub N N 426 PHE C OXT sing N N 427 PHE CB CG sing N N 428 PHE CB HB2 sing N N 429 PHE CB HB3 sing N N 430 PHE CG CD1 doub Y N 431 PHE CG CD2 sing Y N 432 PHE CD1 CE1 sing Y N 433 PHE CD1 HD1 sing N N 434 PHE CD2 CE2 doub Y N 435 PHE CD2 HD2 sing N N 436 PHE CE1 CZ doub Y N 437 PHE CE1 HE1 sing N N 438 PHE CE2 CZ sing Y N 439 PHE CE2 HE2 sing N N 440 PHE CZ HZ sing N N 441 PHE OXT HXT sing N N 442 PRO N CA sing N N 443 PRO N CD sing N N 444 PRO N H sing N N 445 PRO CA C sing N N 446 PRO CA CB sing N N 447 PRO CA HA sing N N 448 PRO C O doub N N 449 PRO C OXT sing N N 450 PRO CB CG sing N N 451 PRO CB HB2 sing N N 452 PRO CB HB3 sing N N 453 PRO CG CD sing N N 454 PRO CG HG2 sing N N 455 PRO CG HG3 sing N N 456 PRO CD HD2 sing N N 457 PRO CD HD3 sing N N 458 PRO OXT HXT sing N N 459 SER N CA sing N N 460 SER N H sing N N 461 SER N H2 sing N N 462 SER CA C sing N N 463 SER CA CB sing N N 464 SER CA HA sing N N 465 SER C O doub N N 466 SER C OXT sing N N 467 SER CB OG sing N N 468 SER CB HB2 sing N N 469 SER CB HB3 sing N N 470 SER OG HG sing N N 471 SER OXT HXT sing N N 472 THR N CA sing N N 473 THR N H sing N N 474 THR N H2 sing N N 475 THR CA C sing N N 476 THR CA CB sing N N 477 THR CA HA sing N N 478 THR C O doub N N 479 THR C OXT sing N N 480 THR CB OG1 sing N N 481 THR CB CG2 sing N N 482 THR CB HB sing N N 483 THR OG1 HG1 sing N N 484 THR CG2 HG21 sing N N 485 THR CG2 HG22 sing N N 486 THR CG2 HG23 sing N N 487 THR OXT HXT sing N N 488 TRP N CA sing N N 489 TRP N H sing N N 490 TRP N H2 sing N N 491 TRP CA C sing N N 492 TRP CA CB sing N N 493 TRP CA HA sing N N 494 TRP C O doub N N 495 TRP C OXT sing N N 496 TRP CB CG sing N N 497 TRP CB HB2 sing N N 498 TRP CB HB3 sing N N 499 TRP CG CD1 doub Y N 500 TRP CG CD2 sing Y N 501 TRP CD1 NE1 sing Y N 502 TRP CD1 HD1 sing N N 503 TRP CD2 CE2 doub Y N 504 TRP CD2 CE3 sing Y N 505 TRP NE1 CE2 sing Y N 506 TRP NE1 HE1 sing N N 507 TRP CE2 CZ2 sing Y N 508 TRP CE3 CZ3 doub Y N 509 TRP CE3 HE3 sing N N 510 TRP CZ2 CH2 doub Y N 511 TRP CZ2 HZ2 sing N N 512 TRP CZ3 CH2 sing Y N 513 TRP CZ3 HZ3 sing N N 514 TRP CH2 HH2 sing N N 515 TRP OXT HXT sing N N 516 TYR N CA sing N N 517 TYR N H sing N N 518 TYR N H2 sing N N 519 TYR CA C sing N N 520 TYR CA CB sing N N 521 TYR CA HA sing N N 522 TYR C O doub N N 523 TYR C OXT sing N N 524 TYR CB CG sing N N 525 TYR CB HB2 sing N N 526 TYR CB HB3 sing N N 527 TYR CG CD1 doub Y N 528 TYR CG CD2 sing Y N 529 TYR CD1 CE1 sing Y N 530 TYR CD1 HD1 sing N N 531 TYR CD2 CE2 doub Y N 532 TYR CD2 HD2 sing N N 533 TYR CE1 CZ doub Y N 534 TYR CE1 HE1 sing N N 535 TYR CE2 CZ sing Y N 536 TYR CE2 HE2 sing N N 537 TYR CZ OH sing N N 538 TYR OH HH sing N N 539 TYR OXT HXT sing N N 540 VAL N CA sing N N 541 VAL N H sing N N 542 VAL N H2 sing N N 543 VAL CA C sing N N 544 VAL CA CB sing N N 545 VAL CA HA sing N N 546 VAL C O doub N N 547 VAL C OXT sing N N 548 VAL CB CG1 sing N N 549 VAL CB CG2 sing N N 550 VAL CB HB sing N N 551 VAL CG1 HG11 sing N N 552 VAL CG1 HG12 sing N N 553 VAL CG1 HG13 sing N N 554 VAL CG2 HG21 sing N N 555 VAL CG2 HG22 sing N N 556 VAL CG2 HG23 sing N N 557 VAL OXT HXT sing N N 558 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1EMH 'double helix' 1EMH 'b-form double helix' 1EMH 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 10 1_555 -0.442 0.732 -1.305 15.904 -19.000 -40.004 1 B_DT2:DA30_C B 2 ? C 30 ? ? ? 1 A DG 2 1_555 B DC 9 1_555 -0.604 -0.167 -0.185 -8.961 11.854 1.098 2 B_DG3:DC29_C B 3 ? C 29 ? 19 1 1 A DT 3 1_555 B DA 8 1_555 -0.379 -0.183 -0.449 15.170 5.995 0.699 3 B_DT4:DA28_C B 4 ? C 28 ? 20 1 1 A DA 5 1_555 B DT 6 1_555 -0.053 -0.113 -0.207 -11.621 -7.987 3.229 4 B_DA6:DT26_C B 6 ? C 26 ? 20 1 1 A DT 6 1_555 B DA 5 1_555 -0.158 -0.069 0.012 2.254 -11.729 6.107 5 B_DT7:DA25_C B 7 ? C 25 ? 20 1 1 A DC 7 1_555 B DG 4 1_555 0.211 -0.069 -0.052 0.760 -16.945 1.872 6 B_DC8:DG24_C B 8 ? C 24 ? 19 1 1 A DT 8 1_555 B DA 3 1_555 -0.142 -0.094 0.025 -14.814 -16.027 4.337 7 B_DT9:DA23_C B 9 ? C 23 ? 20 1 1 A DT 9 1_555 B DA 2 1_555 0.158 -0.002 -0.018 -13.349 -12.517 0.480 8 B_DT10:DA22_C B 10 ? C 22 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 10 1_555 A DG 2 1_555 B DC 9 1_555 3.532 -0.295 3.982 -0.088 9.548 35.586 -2.034 -5.608 3.772 15.285 0.141 36.805 1 BB_DT2DG3:DC29DA30_CC B 2 ? C 30 ? B 3 ? C 29 ? 1 A DG 2 1_555 B DC 9 1_555 A DT 3 1_555 B DA 8 1_555 -0.640 -0.407 2.919 2.796 8.729 26.845 -2.574 1.867 2.583 18.143 -5.811 28.340 2 BB_DG3DT4:DA28DC29_CC B 3 ? C 29 ? B 4 ? C 28 ? 1 A DA 5 1_555 B DT 6 1_555 A DT 6 1_555 B DA 5 1_555 -0.269 -0.623 2.933 -0.792 2.345 27.468 -1.817 0.392 2.878 4.926 1.664 27.577 3 BB_DA6DT7:DA25DT26_CC B 6 ? C 26 ? B 7 ? C 25 ? 1 A DT 6 1_555 B DA 5 1_555 A DC 7 1_555 B DG 4 1_555 -0.137 -0.089 3.233 0.270 1.722 38.295 -0.348 0.242 3.225 2.623 -0.411 38.334 4 BB_DT7DC8:DG24DA25_CC B 7 ? C 25 ? B 8 ? C 24 ? 1 A DC 7 1_555 B DG 4 1_555 A DT 8 1_555 B DA 3 1_555 0.262 -0.363 3.542 2.945 5.067 37.754 -1.244 0.000 3.476 7.773 -4.517 38.190 5 BB_DC8DT9:DA23DG24_CC B 8 ? C 24 ? B 9 ? C 23 ? 1 A DT 8 1_555 B DA 3 1_555 A DT 9 1_555 B DA 2 1_555 -0.180 0.095 3.240 -0.463 4.057 34.803 -0.448 0.230 3.232 6.754 0.771 35.034 6 BB_DT9DT10:DA22DA23_CC B 9 ? C 23 ? B 10 ? C 22 ? # _atom_sites.entry_id 1EMH _atom_sites.fract_transf_matrix[1][1] 0.020553 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015429 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010530 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_