data_1EMJ # _entry.id 1EMJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1EMJ NDB PD0128 RCSB RCSB010725 WWPDB D_1000010725 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1EMH '1EMH contains the same protein complexed to an uncleaved substrate' unspecified PDB 1SSP '1SSP contains the same protein complexed to product-containing DNA' unspecified PDB 2SSP '2SSP contains the L272A mutant of UDG bound to an abasic site' unspecified PDB 4SKN '4SKN contains the L272R/D145N mutant of UDG bound to product DNA' unspecified PDB 1AKZ 'UDG without DNA' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EMJ _pdbx_database_status.recvd_initial_deposition_date 2000-03-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Parikh, S.S.' 1 'Walcher, G.' 2 'Jones, G.D.' 3 'Slupphaug, G.' 4 'Krokan, H.E.' 5 'Blackburn, G.M.' 6 'Tainer, J.A.' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects. ; Proc.Natl.Acad.Sci.USA 97 5083 5088 2000 PNASA6 US 0027-8424 0040 ? 10805771 10.1073/pnas.97.10.5083 1 'Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA' 'Embo J.' 17 5214 5226 1998 EMJODG UK 0261-4189 0897 ? ? 10.1093/emboj/17.17.5214 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Parikh, S.S.' 1 primary 'Walcher, G.' 2 primary 'Jones, G.D.' 3 primary 'Slupphaug, G.' 4 primary 'Krokan, H.E.' 5 primary 'Blackburn, G.M.' 6 primary 'Tainer, J.A.' 7 1 'Parikh, S.S.' 8 1 'Mol, C.D.' 9 1 'Slupphaug, G.' 10 1 'Krokan, H.E.' 11 1 'Tainer, J.A.' 12 # _cell.entry_id 1EMJ _cell.length_a 48.554 _cell.length_b 64.853 _cell.length_c 96.010 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EMJ _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*GP*TP*(ASU)P*AP*TP*CP*TP*T)-3') ; 2619.762 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3') ; 3070.071 1 ? ? ? ? 3 polymer man 'URACIL-DNA GLYCOSYLASE' 25544.137 1 3.2.2.3 'RESIDUES 85-304' ? 'MITOCHONDRIAL PROTEIN' 4 non-polymer syn URACIL 112.087 1 ? ? ? ? 5 water nat water 18.015 161 ? ? ? ? # _entity_name_sys.entity_id 3 _entity_name_sys.name E.C.3.2.2.3 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DT)(DG)(DT)(ASU)(DA)(DT)(DC)(DT)(DT)' TGTNATCTT B ? 2 polydeoxyribonucleotide no no '(DA)(DA)(DA)(DG)(DA)(DT)(DA)(DA)(DC)(DA)' AAAGATAACA C ? 3 'polypeptide(L)' no no ;MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL ; ;MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DT n 1 4 ASU n 1 5 DA n 1 6 DT n 1 7 DC n 1 8 DT n 1 9 DT n 2 1 DA n 2 2 DA n 2 3 DA n 2 4 DG n 2 5 DA n 2 6 DT n 2 7 DA n 2 8 DA n 2 9 DC n 2 10 DA n 3 1 MET n 3 2 GLU n 3 3 PHE n 3 4 PHE n 3 5 GLY n 3 6 GLU n 3 7 SER n 3 8 TRP n 3 9 LYS n 3 10 LYS n 3 11 HIS n 3 12 LEU n 3 13 SER n 3 14 GLY n 3 15 GLU n 3 16 PHE n 3 17 GLY n 3 18 LYS n 3 19 PRO n 3 20 TYR n 3 21 PHE n 3 22 ILE n 3 23 LYS n 3 24 LEU n 3 25 MET n 3 26 GLY n 3 27 PHE n 3 28 VAL n 3 29 ALA n 3 30 GLU n 3 31 GLU n 3 32 ARG n 3 33 LYS n 3 34 HIS n 3 35 TYR n 3 36 THR n 3 37 VAL n 3 38 TYR n 3 39 PRO n 3 40 PRO n 3 41 PRO n 3 42 HIS n 3 43 GLN n 3 44 VAL n 3 45 PHE n 3 46 THR n 3 47 TRP n 3 48 THR n 3 49 GLN n 3 50 MET n 3 51 CYS n 3 52 ASP n 3 53 ILE n 3 54 LYS n 3 55 ASP n 3 56 VAL n 3 57 LYS n 3 58 VAL n 3 59 VAL n 3 60 ILE n 3 61 LEU n 3 62 GLY n 3 63 GLN n 3 64 ASP n 3 65 PRO n 3 66 TYR n 3 67 HIS n 3 68 GLY n 3 69 PRO n 3 70 ASN n 3 71 GLN n 3 72 ALA n 3 73 HIS n 3 74 GLY n 3 75 LEU n 3 76 CYS n 3 77 PHE n 3 78 SER n 3 79 VAL n 3 80 GLN n 3 81 ARG n 3 82 PRO n 3 83 VAL n 3 84 PRO n 3 85 PRO n 3 86 PRO n 3 87 PRO n 3 88 SER n 3 89 LEU n 3 90 GLU n 3 91 ASN n 3 92 ILE n 3 93 TYR n 3 94 LYS n 3 95 GLU n 3 96 LEU n 3 97 SER n 3 98 THR n 3 99 ASP n 3 100 ILE n 3 101 GLU n 3 102 ASP n 3 103 PHE n 3 104 VAL n 3 105 HIS n 3 106 PRO n 3 107 GLY n 3 108 HIS n 3 109 GLY n 3 110 ASP n 3 111 LEU n 3 112 SER n 3 113 GLY n 3 114 TRP n 3 115 ALA n 3 116 LYS n 3 117 GLN n 3 118 GLY n 3 119 VAL n 3 120 LEU n 3 121 LEU n 3 122 LEU n 3 123 ASN n 3 124 ALA n 3 125 VAL n 3 126 LEU n 3 127 THR n 3 128 VAL n 3 129 ARG n 3 130 ALA n 3 131 HIS n 3 132 GLN n 3 133 ALA n 3 134 ASN n 3 135 SER n 3 136 HIS n 3 137 LYS n 3 138 GLU n 3 139 ARG n 3 140 GLY n 3 141 TRP n 3 142 GLU n 3 143 GLN n 3 144 PHE n 3 145 THR n 3 146 ASP n 3 147 ALA n 3 148 VAL n 3 149 VAL n 3 150 SER n 3 151 TRP n 3 152 LEU n 3 153 ASN n 3 154 GLN n 3 155 ASN n 3 156 SER n 3 157 ASN n 3 158 GLY n 3 159 LEU n 3 160 VAL n 3 161 PHE n 3 162 LEU n 3 163 LEU n 3 164 TRP n 3 165 GLY n 3 166 SER n 3 167 TYR n 3 168 ALA n 3 169 GLN n 3 170 LYS n 3 171 LYS n 3 172 GLY n 3 173 SER n 3 174 ALA n 3 175 ILE n 3 176 ASP n 3 177 ARG n 3 178 LYS n 3 179 ARG n 3 180 HIS n 3 181 HIS n 3 182 VAL n 3 183 LEU n 3 184 GLN n 3 185 THR n 3 186 ALA n 3 187 HIS n 3 188 PRO n 3 189 SER n 3 190 PRO n 3 191 LEU n 3 192 SER n 3 193 VAL n 3 194 TYR n 3 195 ARG n 3 196 GLY n 3 197 PHE n 3 198 PHE n 3 199 GLY n 3 200 CYS n 3 201 ARG n 3 202 HIS n 3 203 PHE n 3 204 SER n 3 205 LYS n 3 206 THR n 3 207 ASN n 3 208 GLU n 3 209 LEU n 3 210 LEU n 3 211 GLN n 3 212 LYS n 3 213 SER n 3 214 GLY n 3 215 LYS n 3 216 LYS n 3 217 PRO n 3 218 ILE n 3 219 ASP n 3 220 TRP n 3 221 LYS n 3 222 GLU n 3 223 LEU n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP UNG_HUMAN P13051 3 94 ? ? 2 PDB 1EMJ 1EMJ 1 ? ? ? 3 PDB 1EMJ 1EMJ 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1EMJ A 1 ? 223 ? P13051 94 ? 313 ? 82 304 2 2 1EMJ B 1 ? 9 ? 1EMJ 2 ? 10 ? 2 10 3 3 1EMJ C 1 ? 10 ? 1EMJ 21 ? 30 ? 21 30 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1EMJ MET A 1 ? UNP P13051 PRO 82 CONFLICT 82 1 1 1EMJ GLU A 2 ? UNP P13051 VAL 83 CONFLICT 83 2 1 1EMJ PHE A 3 ? UNP P13051 GLY 84 CONFLICT 84 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 ASU 'DNA linking' . "4'-THIO-2'4'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE" ? 'C5 H11 O6 P S' 230.176 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 URA non-polymer . URACIL ? 'C4 H4 N2 O2' 112.087 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1EMJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.83 _exptl_crystal.density_Matthews 2.40 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'PEG 4000, HEPES buffer, NaCl, dioxane, DTT, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'HEPES buffer' ? ? ? 1 2 1 NaCl ? ? ? 1 3 1 dioxane ? ? ? 1 4 1 DTT ? ? ? 1 5 1 'PEG 4000' ? ? ? 1 6 2 'PEG 4000' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1996-12-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.08 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_wavelength 1.08 _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1EMJ _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.0 _reflns.number_obs 21491 _reflns.number_all 21503 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.1310000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.0 _reflns.B_iso_Wilson_estimate 19.44 _reflns.pdbx_redundancy 6.99 _reflns.R_free_details ? _reflns.limit_k_min ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.4640000 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 3 _reflns_shell.number_unique_all 2088 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1EMJ _refine.ls_number_reflns_obs 21107 _refine.ls_number_reflns_all 21111 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 20 _refine.ls_d_res_high 2.0 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2280000 _refine.ls_R_factor_R_free 0.2570000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10 _refine.ls_number_reflns_R_free 2042 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1808 _refine_hist.pdbx_number_atoms_nucleic_acid 376 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 161 _refine_hist.number_atoms_total 2353 _refine_hist.d_res_high 2.0 _refine_hist.d_res_low 20 # _struct.entry_id 1EMJ _struct.title ;URACIL-DNA GLYCOSYLASE BOUND TO DNA CONTAINING A 4'-THIO-2'DEOXYURIDINE ANALOG PRODUCT ; _struct.pdbx_descriptor 'URACIL-DNA GLYCOSYLASE (E.C.3.2.2.3)/DNA COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EMJ _struct_keywords.pdbx_keywords hydrolase/DNA _struct_keywords.text 'alpha/beta fold, Uracil-DNA Glycosylase, protein/DNA, hydrolase-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY C 5 ? SER C 13 ? GLY A 86 SER A 94 1 ? 9 HELX_P HELX_P2 2 GLY C 14 ? PHE C 16 ? GLY A 95 PHE A 97 5 ? 3 HELX_P HELX_P3 3 LYS C 18 ? TYR C 35 ? LYS A 99 TYR A 116 1 ? 18 HELX_P HELX_P4 4 PRO C 40 ? VAL C 44 ? PRO A 121 VAL A 125 5 ? 5 HELX_P HELX_P5 5 PHE C 45 ? GLN C 49 ? PHE A 126 GLN A 130 5 ? 5 HELX_P HELX_P6 6 ASP C 52 ? VAL C 56 ? ASP A 133 VAL A 137 5 ? 5 HELX_P HELX_P7 7 PRO C 86 ? ILE C 100 ? PRO A 167 ILE A 181 1 ? 15 HELX_P HELX_P8 8 LEU C 111 ? LYS C 116 ? LEU A 192 LYS A 197 1 ? 6 HELX_P HELX_P9 9 GLY C 140 ? SER C 156 ? GLY A 221 SER A 237 1 ? 17 HELX_P HELX_P10 10 GLY C 165 ? LYS C 170 ? GLY A 246 LYS A 251 1 ? 6 HELX_P HELX_P11 11 LYS C 171 ? ILE C 175 ? LYS A 252 ILE A 256 5 ? 5 HELX_P HELX_P12 12 SER C 192 ? GLY C 196 ? SER A 273 GLY A 277 5 ? 5 HELX_P HELX_P13 13 ARG C 201 ? SER C 213 ? ARG A 282 SER A 294 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A DT 3 "O3'" ? ? ? 1_555 A ASU 4 P ? ? B DT 4 B ASU 5 1_555 ? ? ? ? ? ? ? 1.611 ? covale2 covale ? ? A ASU 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? B ASU 5 B DA 6 1_555 ? ? ? ? ? ? ? 1.599 ? hydrog1 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 10 N6 ? ? B DT 2 C DA 30 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? hydrog2 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? B DG 3 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 9 O2 ? ? B DG 3 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 9 N4 ? ? B DG 3 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 8 N1 ? ? B DT 4 C DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 8 N6 ? ? B DT 4 C DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 6 N3 ? ? B DA 6 C DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 6 O4 ? ? B DA 6 C DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 5 N1 ? ? B DT 7 C DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 5 N6 ? ? B DT 7 C DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? B DC 8 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? B DC 8 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? B DC 8 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? B DT 9 C DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? B DT 9 C DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 2 N1 ? ? B DT 10 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 2 N6 ? ? B DT 10 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 38 C . ? TYR 119 A PRO 39 C ? PRO 120 A 1 -0.87 2 ARG 81 C . ? ARG 162 A PRO 82 C ? PRO 163 A 1 0.47 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL C 37 ? TYR C 38 ? VAL A 118 TYR A 119 A 2 VAL C 128 ? ARG C 129 ? VAL A 209 ARG A 210 B 1 VAL C 119 ? ASN C 123 ? VAL A 200 ASN A 204 B 2 VAL C 58 ? GLY C 62 ? VAL A 139 GLY A 143 B 3 VAL C 160 ? TRP C 164 ? VAL A 241 TRP A 245 B 4 HIS C 181 ? THR C 185 ? HIS A 262 THR A 266 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR C 38 ? N TYR A 119 O VAL C 128 ? O VAL A 209 B 1 2 N LEU C 120 ? N LEU A 201 O VAL C 58 ? O VAL A 139 B 2 3 N VAL C 59 ? N VAL A 140 O VAL C 160 ? O VAL A 241 B 3 4 N PHE C 161 ? N PHE A 242 O HIS C 181 ? O HIS A 262 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE URA A 55' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 GLY C 62 ? GLY A 143 . ? 1_555 ? 2 AC1 10 GLN C 63 ? GLN A 144 . ? 1_555 ? 3 AC1 10 ASP C 64 ? ASP A 145 . ? 1_555 ? 4 AC1 10 TYR C 66 ? TYR A 147 . ? 1_555 ? 5 AC1 10 CYS C 76 ? CYS A 157 . ? 1_555 ? 6 AC1 10 PHE C 77 ? PHE A 158 . ? 1_555 ? 7 AC1 10 ASN C 123 ? ASN A 204 . ? 1_555 ? 8 AC1 10 HIS C 187 ? HIS A 268 . ? 1_555 ? 9 AC1 10 HOH G . ? HOH A 427 . ? 1_555 ? 10 AC1 10 ASU A 4 ? ASU B 5 . ? 1_555 ? # _database_PDB_matrix.entry_id 1EMJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1EMJ _atom_sites.fract_transf_matrix[1][1] 0.020596 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015419 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010416 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 2 2 DT T B . n A 1 2 DG 2 3 3 DG G B . n A 1 3 DT 3 4 4 DT T B . n A 1 4 ASU 4 5 5 ASU ASU B . n A 1 5 DA 5 6 6 DA A B . n A 1 6 DT 6 7 7 DT T B . n A 1 7 DC 7 8 8 DC C B . n A 1 8 DT 8 9 9 DT T B . n A 1 9 DT 9 10 10 DT T B . n B 2 1 DA 1 21 21 DA A C . n B 2 2 DA 2 22 22 DA A C . n B 2 3 DA 3 23 23 DA A C . n B 2 4 DG 4 24 24 DG G C . n B 2 5 DA 5 25 25 DA A C . n B 2 6 DT 6 26 26 DT T C . n B 2 7 DA 7 27 27 DA A C . n B 2 8 DA 8 28 28 DA A C . n B 2 9 DC 9 29 29 DC C C . n B 2 10 DA 10 30 30 DA A C . n C 3 1 MET 1 82 82 MET MET A . n C 3 2 GLU 2 83 83 GLU GLU A . n C 3 3 PHE 3 84 84 PHE PHE A . n C 3 4 PHE 4 85 85 PHE PHE A . n C 3 5 GLY 5 86 86 GLY GLY A . n C 3 6 GLU 6 87 87 GLU GLU A . n C 3 7 SER 7 88 88 SER SER A . n C 3 8 TRP 8 89 89 TRP TRP A . n C 3 9 LYS 9 90 90 LYS LYS A . n C 3 10 LYS 10 91 91 LYS LYS A . n C 3 11 HIS 11 92 92 HIS HIS A . n C 3 12 LEU 12 93 93 LEU LEU A . n C 3 13 SER 13 94 94 SER SER A . n C 3 14 GLY 14 95 95 GLY GLY A . n C 3 15 GLU 15 96 96 GLU GLU A . n C 3 16 PHE 16 97 97 PHE PHE A . n C 3 17 GLY 17 98 98 GLY GLY A . n C 3 18 LYS 18 99 99 LYS LYS A . n C 3 19 PRO 19 100 100 PRO PRO A . n C 3 20 TYR 20 101 101 TYR TYR A . n C 3 21 PHE 21 102 102 PHE PHE A . n C 3 22 ILE 22 103 103 ILE ILE A . n C 3 23 LYS 23 104 104 LYS LYS A . n C 3 24 LEU 24 105 105 LEU LEU A . n C 3 25 MET 25 106 106 MET MET A . n C 3 26 GLY 26 107 107 GLY GLY A . n C 3 27 PHE 27 108 108 PHE PHE A . n C 3 28 VAL 28 109 109 VAL VAL A . n C 3 29 ALA 29 110 110 ALA ALA A . n C 3 30 GLU 30 111 111 GLU GLU A . n C 3 31 GLU 31 112 112 GLU GLU A . n C 3 32 ARG 32 113 113 ARG ARG A . n C 3 33 LYS 33 114 114 LYS LYS A . n C 3 34 HIS 34 115 115 HIS HIS A . n C 3 35 TYR 35 116 116 TYR TYR A . n C 3 36 THR 36 117 117 THR THR A . n C 3 37 VAL 37 118 118 VAL VAL A . n C 3 38 TYR 38 119 119 TYR TYR A . n C 3 39 PRO 39 120 120 PRO PRO A . n C 3 40 PRO 40 121 121 PRO PRO A . n C 3 41 PRO 41 122 122 PRO PRO A . n C 3 42 HIS 42 123 123 HIS HIS A . n C 3 43 GLN 43 124 124 GLN GLN A . n C 3 44 VAL 44 125 125 VAL VAL A . n C 3 45 PHE 45 126 126 PHE PHE A . n C 3 46 THR 46 127 127 THR THR A . n C 3 47 TRP 47 128 128 TRP TRP A . n C 3 48 THR 48 129 129 THR THR A . n C 3 49 GLN 49 130 130 GLN GLN A . n C 3 50 MET 50 131 131 MET MET A . n C 3 51 CYS 51 132 132 CYS CYS A . n C 3 52 ASP 52 133 133 ASP ASP A . n C 3 53 ILE 53 134 134 ILE ILE A . n C 3 54 LYS 54 135 135 LYS LYS A . n C 3 55 ASP 55 136 136 ASP ASP A . n C 3 56 VAL 56 137 137 VAL VAL A . n C 3 57 LYS 57 138 138 LYS LYS A . n C 3 58 VAL 58 139 139 VAL VAL A . n C 3 59 VAL 59 140 140 VAL VAL A . n C 3 60 ILE 60 141 141 ILE ILE A . n C 3 61 LEU 61 142 142 LEU LEU A . n C 3 62 GLY 62 143 143 GLY GLY A . n C 3 63 GLN 63 144 144 GLN GLN A . n C 3 64 ASP 64 145 145 ASP ASP A . n C 3 65 PRO 65 146 146 PRO PRO A . n C 3 66 TYR 66 147 147 TYR TYR A . n C 3 67 HIS 67 148 148 HIS HIS A . n C 3 68 GLY 68 149 149 GLY GLY A . n C 3 69 PRO 69 150 150 PRO PRO A . n C 3 70 ASN 70 151 151 ASN ASN A . n C 3 71 GLN 71 152 152 GLN GLN A . n C 3 72 ALA 72 153 153 ALA ALA A . n C 3 73 HIS 73 154 154 HIS HIS A . n C 3 74 GLY 74 155 155 GLY GLY A . n C 3 75 LEU 75 156 156 LEU LEU A . n C 3 76 CYS 76 157 157 CYS CYS A . n C 3 77 PHE 77 158 158 PHE PHE A . n C 3 78 SER 78 159 159 SER SER A . n C 3 79 VAL 79 160 160 VAL VAL A . n C 3 80 GLN 80 161 161 GLN GLN A . n C 3 81 ARG 81 162 162 ARG ARG A . n C 3 82 PRO 82 163 163 PRO PRO A . n C 3 83 VAL 83 164 164 VAL VAL A . n C 3 84 PRO 84 165 165 PRO PRO A . n C 3 85 PRO 85 166 166 PRO PRO A . n C 3 86 PRO 86 167 167 PRO PRO A . n C 3 87 PRO 87 168 168 PRO PRO A . n C 3 88 SER 88 169 169 SER SER A . n C 3 89 LEU 89 170 170 LEU LEU A . n C 3 90 GLU 90 171 171 GLU GLU A . n C 3 91 ASN 91 172 172 ASN ASN A . n C 3 92 ILE 92 173 173 ILE ILE A . n C 3 93 TYR 93 174 174 TYR TYR A . n C 3 94 LYS 94 175 175 LYS LYS A . n C 3 95 GLU 95 176 176 GLU GLU A . n C 3 96 LEU 96 177 177 LEU LEU A . n C 3 97 SER 97 178 178 SER SER A . n C 3 98 THR 98 179 179 THR THR A . n C 3 99 ASP 99 180 180 ASP ASP A . n C 3 100 ILE 100 181 181 ILE ILE A . n C 3 101 GLU 101 182 182 GLU GLU A . n C 3 102 ASP 102 183 183 ASP ASP A . n C 3 103 PHE 103 184 184 PHE PHE A . n C 3 104 VAL 104 185 185 VAL VAL A . n C 3 105 HIS 105 186 186 HIS HIS A . n C 3 106 PRO 106 187 187 PRO PRO A . n C 3 107 GLY 107 188 188 GLY GLY A . n C 3 108 HIS 108 189 189 HIS HIS A . n C 3 109 GLY 109 190 190 GLY GLY A . n C 3 110 ASP 110 191 191 ASP ASP A . n C 3 111 LEU 111 192 192 LEU LEU A . n C 3 112 SER 112 193 193 SER SER A . n C 3 113 GLY 113 194 194 GLY GLY A . n C 3 114 TRP 114 195 195 TRP TRP A . n C 3 115 ALA 115 196 196 ALA ALA A . n C 3 116 LYS 116 197 197 LYS LYS A . n C 3 117 GLN 117 198 198 GLN GLN A . n C 3 118 GLY 118 199 199 GLY GLY A . n C 3 119 VAL 119 200 200 VAL VAL A . n C 3 120 LEU 120 201 201 LEU LEU A . n C 3 121 LEU 121 202 202 LEU LEU A . n C 3 122 LEU 122 203 203 LEU LEU A . n C 3 123 ASN 123 204 204 ASN ASN A . n C 3 124 ALA 124 205 205 ALA ALA A . n C 3 125 VAL 125 206 206 VAL VAL A . n C 3 126 LEU 126 207 207 LEU LEU A . n C 3 127 THR 127 208 208 THR THR A . n C 3 128 VAL 128 209 209 VAL VAL A . n C 3 129 ARG 129 210 210 ARG ARG A . n C 3 130 ALA 130 211 211 ALA ALA A . n C 3 131 HIS 131 212 212 HIS HIS A . n C 3 132 GLN 132 213 213 GLN GLN A . n C 3 133 ALA 133 214 214 ALA ALA A . n C 3 134 ASN 134 215 215 ASN ASN A . n C 3 135 SER 135 216 216 SER SER A . n C 3 136 HIS 136 217 217 HIS HIS A . n C 3 137 LYS 137 218 218 LYS LYS A . n C 3 138 GLU 138 219 219 GLU GLU A . n C 3 139 ARG 139 220 220 ARG ARG A . n C 3 140 GLY 140 221 221 GLY GLY A . n C 3 141 TRP 141 222 222 TRP TRP A . n C 3 142 GLU 142 223 223 GLU GLU A . n C 3 143 GLN 143 224 224 GLN GLN A . n C 3 144 PHE 144 225 225 PHE PHE A . n C 3 145 THR 145 226 226 THR THR A . n C 3 146 ASP 146 227 227 ASP ASP A . n C 3 147 ALA 147 228 228 ALA ALA A . n C 3 148 VAL 148 229 229 VAL VAL A . n C 3 149 VAL 149 230 230 VAL VAL A . n C 3 150 SER 150 231 231 SER SER A . n C 3 151 TRP 151 232 232 TRP TRP A . n C 3 152 LEU 152 233 233 LEU LEU A . n C 3 153 ASN 153 234 234 ASN ASN A . n C 3 154 GLN 154 235 235 GLN GLN A . n C 3 155 ASN 155 236 236 ASN ASN A . n C 3 156 SER 156 237 237 SER SER A . n C 3 157 ASN 157 238 238 ASN ASN A . n C 3 158 GLY 158 239 239 GLY GLY A . n C 3 159 LEU 159 240 240 LEU LEU A . n C 3 160 VAL 160 241 241 VAL VAL A . n C 3 161 PHE 161 242 242 PHE PHE A . n C 3 162 LEU 162 243 243 LEU LEU A . n C 3 163 LEU 163 244 244 LEU LEU A . n C 3 164 TRP 164 245 245 TRP TRP A . n C 3 165 GLY 165 246 246 GLY GLY A . n C 3 166 SER 166 247 247 SER SER A . n C 3 167 TYR 167 248 248 TYR TYR A . n C 3 168 ALA 168 249 249 ALA ALA A . n C 3 169 GLN 169 250 250 GLN GLN A . n C 3 170 LYS 170 251 251 LYS LYS A . n C 3 171 LYS 171 252 252 LYS LYS A . n C 3 172 GLY 172 253 253 GLY GLY A . n C 3 173 SER 173 254 254 SER SER A . n C 3 174 ALA 174 255 255 ALA ALA A . n C 3 175 ILE 175 256 256 ILE ILE A . n C 3 176 ASP 176 257 257 ASP ASP A . n C 3 177 ARG 177 258 258 ARG ARG A . n C 3 178 LYS 178 259 259 LYS LYS A . n C 3 179 ARG 179 260 260 ARG ARG A . n C 3 180 HIS 180 261 261 HIS HIS A . n C 3 181 HIS 181 262 262 HIS HIS A . n C 3 182 VAL 182 263 263 VAL VAL A . n C 3 183 LEU 183 264 264 LEU LEU A . n C 3 184 GLN 184 265 265 GLN GLN A . n C 3 185 THR 185 266 266 THR THR A . n C 3 186 ALA 186 267 267 ALA ALA A . n C 3 187 HIS 187 268 268 HIS HIS A . n C 3 188 PRO 188 269 269 PRO PRO A . n C 3 189 SER 189 270 270 SER SER A . n C 3 190 PRO 190 271 271 PRO PRO A . n C 3 191 LEU 191 272 272 LEU LEU A . n C 3 192 SER 192 273 273 SER SER A . n C 3 193 VAL 193 274 274 VAL VAL A . n C 3 194 TYR 194 275 275 TYR TYR A . n C 3 195 ARG 195 276 276 ARG ARG A . n C 3 196 GLY 196 277 277 GLY GLY A . n C 3 197 PHE 197 278 278 PHE PHE A . n C 3 198 PHE 198 279 279 PHE PHE A . n C 3 199 GLY 199 280 280 GLY GLY A . n C 3 200 CYS 200 281 281 CYS CYS A . n C 3 201 ARG 201 282 282 ARG ARG A . n C 3 202 HIS 202 283 283 HIS HIS A . n C 3 203 PHE 203 284 284 PHE PHE A . n C 3 204 SER 204 285 285 SER SER A . n C 3 205 LYS 205 286 286 LYS LYS A . n C 3 206 THR 206 287 287 THR THR A . n C 3 207 ASN 207 288 288 ASN ASN A . n C 3 208 GLU 208 289 289 GLU GLU A . n C 3 209 LEU 209 290 290 LEU LEU A . n C 3 210 LEU 210 291 291 LEU LEU A . n C 3 211 GLN 211 292 292 GLN GLN A . n C 3 212 LYS 212 293 293 LYS LYS A . n C 3 213 SER 213 294 294 SER SER A . n C 3 214 GLY 214 295 295 GLY GLY A . n C 3 215 LYS 215 296 296 LYS LYS A . n C 3 216 LYS 216 297 297 LYS LYS A . n C 3 217 PRO 217 298 298 PRO PRO A . n C 3 218 ILE 218 299 299 ILE ILE A . n C 3 219 ASP 219 300 300 ASP ASP A . n C 3 220 TRP 220 301 301 TRP TRP A . n C 3 221 LYS 221 302 302 LYS LYS A . n C 3 222 GLU 222 303 303 GLU GLU A . n C 3 223 LEU 223 304 304 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 URA 1 55 55 URA URA A . E 5 HOH 1 535 535 HOH HOH B . E 5 HOH 2 536 536 HOH HOH B . E 5 HOH 3 540 540 HOH HOH B . E 5 HOH 4 573 573 HOH HOH B . E 5 HOH 5 574 574 HOH HOH B . E 5 HOH 6 752 752 HOH HOH B . E 5 HOH 7 753 753 HOH HOH B . E 5 HOH 8 771 771 HOH HOH B . E 5 HOH 9 772 772 HOH HOH B . E 5 HOH 10 774 774 HOH HOH B . E 5 HOH 11 778 778 HOH HOH B . E 5 HOH 12 789 789 HOH HOH B . F 5 HOH 1 564 564 HOH HOH C . F 5 HOH 2 577 577 HOH HOH C . F 5 HOH 3 587 587 HOH HOH C . F 5 HOH 4 756 756 HOH HOH C . F 5 HOH 5 773 773 HOH HOH C . G 5 HOH 1 400 400 HOH HOH A . G 5 HOH 2 403 403 HOH HOH A . G 5 HOH 3 404 404 HOH HOH A . G 5 HOH 4 405 405 HOH HOH A . G 5 HOH 5 406 406 HOH HOH A . G 5 HOH 6 408 408 HOH HOH A . G 5 HOH 7 409 409 HOH HOH A . G 5 HOH 8 411 411 HOH HOH A . G 5 HOH 9 420 420 HOH HOH A . G 5 HOH 10 421 421 HOH HOH A . G 5 HOH 11 422 422 HOH HOH A . G 5 HOH 12 427 427 HOH HOH A . G 5 HOH 13 429 429 HOH HOH A . G 5 HOH 14 430 430 HOH HOH A . G 5 HOH 15 431 431 HOH HOH A . G 5 HOH 16 432 432 HOH HOH A . G 5 HOH 17 433 433 HOH HOH A . G 5 HOH 18 435 435 HOH HOH A . G 5 HOH 19 438 438 HOH HOH A . G 5 HOH 20 439 439 HOH HOH A . G 5 HOH 21 441 441 HOH HOH A . G 5 HOH 22 450 450 HOH HOH A . G 5 HOH 23 452 452 HOH HOH A . G 5 HOH 24 464 464 HOH HOH A . G 5 HOH 25 473 473 HOH HOH A . G 5 HOH 26 474 474 HOH HOH A . G 5 HOH 27 477 477 HOH HOH A . G 5 HOH 28 478 478 HOH HOH A . G 5 HOH 29 521 521 HOH HOH A . G 5 HOH 30 522 522 HOH HOH A . G 5 HOH 31 523 523 HOH HOH A . G 5 HOH 32 524 524 HOH HOH A . G 5 HOH 33 525 525 HOH HOH A . G 5 HOH 34 527 527 HOH HOH A . G 5 HOH 35 531 531 HOH HOH A . G 5 HOH 36 534 534 HOH HOH A . G 5 HOH 37 543 543 HOH HOH A . G 5 HOH 38 544 544 HOH HOH A . G 5 HOH 39 548 548 HOH HOH A . G 5 HOH 40 549 549 HOH HOH A . G 5 HOH 41 551 551 HOH HOH A . G 5 HOH 42 556 556 HOH HOH A . G 5 HOH 43 559 559 HOH HOH A . G 5 HOH 44 560 560 HOH HOH A . G 5 HOH 45 563 563 HOH HOH A . G 5 HOH 46 570 570 HOH HOH A . G 5 HOH 47 575 575 HOH HOH A . G 5 HOH 48 584 584 HOH HOH A . G 5 HOH 49 589 589 HOH HOH A . G 5 HOH 50 596 596 HOH HOH A . G 5 HOH 51 597 597 HOH HOH A . G 5 HOH 52 598 598 HOH HOH A . G 5 HOH 53 599 599 HOH HOH A . G 5 HOH 54 601 601 HOH HOH A . G 5 HOH 55 700 700 HOH HOH A . G 5 HOH 56 702 702 HOH HOH A . G 5 HOH 57 704 704 HOH HOH A . G 5 HOH 58 705 705 HOH HOH A . G 5 HOH 59 706 706 HOH HOH A . G 5 HOH 60 708 708 HOH HOH A . G 5 HOH 61 709 709 HOH HOH A . G 5 HOH 62 711 711 HOH HOH A . G 5 HOH 63 712 712 HOH HOH A . G 5 HOH 64 714 714 HOH HOH A . G 5 HOH 65 716 716 HOH HOH A . G 5 HOH 66 717 717 HOH HOH A . G 5 HOH 67 718 718 HOH HOH A . G 5 HOH 68 750 750 HOH HOH A . G 5 HOH 69 751 751 HOH HOH A . G 5 HOH 70 754 754 HOH HOH A . G 5 HOH 71 755 755 HOH HOH A . G 5 HOH 72 757 757 HOH HOH A . G 5 HOH 73 758 758 HOH HOH A . G 5 HOH 74 759 759 HOH HOH A . G 5 HOH 75 760 760 HOH HOH A . G 5 HOH 76 761 761 HOH HOH A . G 5 HOH 77 762 762 HOH HOH A . G 5 HOH 78 763 763 HOH HOH A . G 5 HOH 79 764 764 HOH HOH A . G 5 HOH 80 766 766 HOH HOH A . G 5 HOH 81 767 767 HOH HOH A . G 5 HOH 82 768 768 HOH HOH A . G 5 HOH 83 769 769 HOH HOH A . G 5 HOH 84 770 770 HOH HOH A . G 5 HOH 85 776 776 HOH HOH A . G 5 HOH 86 777 777 HOH HOH A . G 5 HOH 87 779 779 HOH HOH A . G 5 HOH 88 780 780 HOH HOH A . G 5 HOH 89 781 781 HOH HOH A . G 5 HOH 90 782 782 HOH HOH A . G 5 HOH 91 783 783 HOH HOH A . G 5 HOH 92 790 790 HOH HOH A . G 5 HOH 93 791 791 HOH HOH A . G 5 HOH 94 792 792 HOH HOH A . G 5 HOH 95 793 793 HOH HOH A . G 5 HOH 96 794 794 HOH HOH A . G 5 HOH 97 795 795 HOH HOH A . G 5 HOH 98 796 796 HOH HOH A . G 5 HOH 99 799 799 HOH HOH A . G 5 HOH 100 800 800 HOH HOH A . G 5 HOH 101 801 801 HOH HOH A . G 5 HOH 102 802 802 HOH HOH A . G 5 HOH 103 804 804 HOH HOH A . G 5 HOH 104 805 805 HOH HOH A . G 5 HOH 105 806 806 HOH HOH A . G 5 HOH 106 808 808 HOH HOH A . G 5 HOH 107 809 809 HOH HOH A . G 5 HOH 108 810 810 HOH HOH A . G 5 HOH 109 811 811 HOH HOH A . G 5 HOH 110 812 812 HOH HOH A . G 5 HOH 111 813 813 HOH HOH A . G 5 HOH 112 814 814 HOH HOH A . G 5 HOH 113 815 815 HOH HOH A . G 5 HOH 114 816 816 HOH HOH A . G 5 HOH 115 817 817 HOH HOH A . G 5 HOH 116 818 818 HOH HOH A . G 5 HOH 117 819 819 HOH HOH A . G 5 HOH 118 820 820 HOH HOH A . G 5 HOH 119 821 821 HOH HOH A . G 5 HOH 120 822 822 HOH HOH A . G 5 HOH 121 823 823 HOH HOH A . G 5 HOH 122 824 824 HOH HOH A . G 5 HOH 123 825 825 HOH HOH A . G 5 HOH 124 826 826 HOH HOH A . G 5 HOH 125 827 827 HOH HOH A . G 5 HOH 126 828 828 HOH HOH A . G 5 HOH 127 829 829 HOH HOH A . G 5 HOH 128 830 830 HOH HOH A . G 5 HOH 129 831 831 HOH HOH A . G 5 HOH 130 832 832 HOH HOH A . G 5 HOH 131 833 833 HOH HOH A . G 5 HOH 132 834 834 HOH HOH A . G 5 HOH 133 835 835 HOH HOH A . G 5 HOH 134 836 836 HOH HOH A . G 5 HOH 135 837 837 HOH HOH A . G 5 HOH 136 838 838 HOH HOH A . G 5 HOH 137 839 839 HOH HOH A . G 5 HOH 138 840 840 HOH HOH A . G 5 HOH 139 841 841 HOH HOH A . G 5 HOH 140 844 844 HOH HOH A . G 5 HOH 141 845 845 HOH HOH A . G 5 HOH 142 846 846 HOH HOH A . G 5 HOH 143 847 847 HOH HOH A . G 5 HOH 144 848 848 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-05-16 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 CNS refinement . ? 2 MAR345 'data collection' . ? 3 SCALEPACK 'data scaling' . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 144 ? ? -82.12 -73.19 2 1 GLN A 152 ? ? -97.41 -69.63 3 1 PHE A 158 ? ? 70.11 -0.70 4 1 SER A 273 ? ? -144.73 -13.98 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1EMJ 'double helix' 1EMJ 'b-form double helix' 1EMJ 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 10 1_555 -1.080 1.064 -1.306 6.009 -8.367 -46.444 1 B_DT2:DA30_C B 2 ? C 30 ? ? ? 1 A DG 2 1_555 B DC 9 1_555 -0.615 -0.096 -0.256 -0.964 10.363 0.680 2 B_DG3:DC29_C B 3 ? C 29 ? 19 1 1 A DT 3 1_555 B DA 8 1_555 -0.436 0.226 -0.716 24.264 7.767 4.987 3 B_DT4:DA28_C B 4 ? C 28 ? 20 1 1 A DA 5 1_555 B DT 6 1_555 -0.070 -0.172 0.106 -1.166 -8.085 1.532 4 B_DA6:DT26_C B 6 ? C 26 ? 20 1 1 A DT 6 1_555 B DA 5 1_555 -0.126 -0.108 0.147 5.575 -10.488 5.199 5 B_DT7:DA25_C B 7 ? C 25 ? 20 1 1 A DC 7 1_555 B DG 4 1_555 0.076 0.222 0.044 -0.296 -15.327 3.878 6 B_DC8:DG24_C B 8 ? C 24 ? 19 1 1 A DT 8 1_555 B DA 3 1_555 -0.023 0.153 0.440 -17.067 -11.372 4.016 7 B_DT9:DA23_C B 9 ? C 23 ? 20 1 1 A DT 9 1_555 B DA 2 1_555 0.202 -0.005 0.134 -11.606 -11.156 1.589 8 B_DT10:DA22_C B 10 ? C 22 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 10 1_555 A DG 2 1_555 B DC 9 1_555 3.844 -0.044 3.642 -4.631 15.508 35.619 -2.026 -6.341 2.877 23.890 7.134 39.015 1 BB_DT2DG3:DC29DA30_CC B 2 ? C 30 ? B 3 ? C 29 ? 1 A DG 2 1_555 B DC 9 1_555 A DT 3 1_555 B DA 8 1_555 -0.235 -0.359 2.849 2.619 8.127 29.318 -2.064 0.893 2.627 15.643 -5.042 30.510 2 BB_DG3DT4:DA28DC29_CC B 3 ? C 29 ? B 4 ? C 28 ? 1 A DA 5 1_555 B DT 6 1_555 A DT 6 1_555 B DA 5 1_555 -0.045 -0.698 3.106 -0.802 1.152 29.072 -1.627 -0.077 3.077 2.293 1.596 29.105 3 BB_DA6DT7:DA25DT26_CC B 6 ? C 26 ? B 7 ? C 25 ? 1 A DT 6 1_555 B DA 5 1_555 A DC 7 1_555 B DG 4 1_555 -0.116 -0.260 3.299 0.468 -0.652 38.220 -0.315 0.237 3.301 -0.996 -0.715 38.228 4 BB_DT7DC8:DG24DA25_CC B 7 ? C 25 ? B 8 ? C 24 ? 1 A DC 7 1_555 B DG 4 1_555 A DT 8 1_555 B DA 3 1_555 0.249 -0.393 3.620 0.550 2.213 39.060 -0.880 -0.299 3.597 3.307 -0.822 39.124 5 BB_DC8DT9:DA23DG24_CC B 8 ? C 24 ? B 9 ? C 23 ? 1 A DT 8 1_555 B DA 3 1_555 A DT 9 1_555 B DA 2 1_555 -0.110 -0.028 3.131 2.735 2.318 34.289 -0.392 0.592 3.105 3.919 -4.622 34.470 6 BB_DT9DT10:DA22DA23_CC B 9 ? C 23 ? B 10 ? C 22 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 URACIL URA 5 water HOH #